annotate test-data/test_2_output_log_file.contains @ 2:74c9214cc8e6 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
author devteam
date Wed, 24 Oct 2018 11:31:03 -0400
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74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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1 #############################################
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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2 ###### SICER v1.1 ######
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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3 #############################################
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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4 Input library directory:
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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5 ChIP library: input_bed_file.bed
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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6 Control library: input_control_file.bed
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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7 Output directory:
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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8 Species: mm8
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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9 Threshold for redundancy allowed for chip reads: 1
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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10 Threshold for redundancy allowed for control reads: 1
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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11 Window size: 200 bps
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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12 Fragment size: 150 bps. The shift for reads is half of 150
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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13 Effective genome size as a fraction of the reference genome of mm8: 0.740000
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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14 Gap size: 600 bps
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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15 Evalue for identification of candidate islands that exhibit clustering: 1000
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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16 False discovery rate controlling significance: 0.01
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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17 Preprocess the raw input_bed_file file to remove redundancy with threshold 1...
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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18 chr1 Plus reads: 4989 Retained plus reads: 4935 ; Minus reads: 5011 Retained minus reads: 4963
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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19 chr2 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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20 chr3 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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21 chr4 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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22 chr5 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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23 chr6 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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24 chr7 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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25 chr8 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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26 chr9 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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27 chr10 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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28 chr11 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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29 chr12 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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30 chr13 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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31 chr14 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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32 chr15 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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33 chr16 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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34 chr17 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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35 chr18 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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36 chr19 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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37 chrX Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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38 chrY Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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39 chrM Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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40 Preprocess the raw input_control_file file to remove redundancy with threshold 1...
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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41 chr1 Plus reads: 4980 Retained plus reads: 4937 ; Minus reads: 5020 Retained minus reads: 4959
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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42 chr2 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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43 chr3 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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44 chr4 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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45 chr5 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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46 chr6 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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47 chr7 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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48 chr8 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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49 chr9 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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50 chr10 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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51 chr11 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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52 chr12 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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53 chr13 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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54 chr14 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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55 chr15 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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56 chr16 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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57 chr17 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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58 chr18 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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59 chr19 Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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60 chrX Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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61 chrY Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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62 chrM Plus reads: 0 Retained plus reads: 0 ; Minus reads: 0 Retained minus reads: 0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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63 Partion the genome in windows ...
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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64 Generate summary files ...
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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65 total tag count in chr1.bed is: 9898.0 = 4935.0+4963.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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66 total tag count in chr2.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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67 total tag count in chr3.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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68 total tag count in chr4.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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69 total tag count in chr5.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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70 total tag count in chr6.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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71 total tag count in chr7.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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72 total tag count in chr8.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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73 total tag count in chr9.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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74 total tag count in chr10.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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75 total tag count in chr11.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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76 total tag count in chr12.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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77 total tag count in chr13.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
78 total tag count in chr14.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
79 total tag count in chr15.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
80 total tag count in chr16.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
81 total tag count in chr17.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
82 total tag count in chr18.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
83 total tag count in chr19.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
84 total tag count in chrX.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
85 total tag count in chrY.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
86 total tag count in chrM.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
87 Normalize summary graph by total island filtered reads per million for input_bed_file ...
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
88 Convert the normalized summary graph into wig vstep format...
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
89 Find candidate islands exhibiting clustering ...
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
90 Species: mm8
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
91 Window_size: 200
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
92 Gap size: 600
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
93 E value is: 1000.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
94 Total read count: 9898.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
95 Genome Length: 2644093988
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
96 Effective genome Length: 1956629551
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
97 Window average: 0.0010117398048
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
98 Window pvalue: 0.2
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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99 Minimum num of tags in a qualified window: 1
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
100 Generate the enriched probscore summary graph and filter the summary graph to get rid of ineligible windows
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
101 Determine the score threshold from random background
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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102 The score threshold is: 6.898
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
103 Make and write islands
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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104 Total number of islands: 417
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
105 Calculate significance of candidate islands using the control library ...
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
106 chip library size 9898.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
107 control library size 9896.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
108 Total number of chip reads on islands is: 9811
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
109 Total number of control reads on islands is: 8514
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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110 Identify significant islands using FDR criterion ...
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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111 Given significance 0.01 , there are 184 significant islands
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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112 Convert island summary to island bed file of format chr start end ChIP-read-count
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
113 Filter reads with identified significant islands...
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
114 Make summary graph with filtered reads...
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
115 total tag count in chr1.bed is: 4303.0 = 2148.0+2155.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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116 total tag count in chr2.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
117 total tag count in chr3.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
118 total tag count in chr4.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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119 total tag count in chr5.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
120 total tag count in chr6.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
121 total tag count in chr7.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
122 total tag count in chr8.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
123 total tag count in chr9.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
124 total tag count in chr10.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
125 total tag count in chr11.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
126 total tag count in chr12.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
127 total tag count in chr13.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
128 total tag count in chr14.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
129 total tag count in chr15.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
130 total tag count in chr16.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
131 total tag count in chr17.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
132 total tag count in chr18.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
133 total tag count in chr19.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
134 total tag count in chrX.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
135 total tag count in chrY.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
136 total tag count in chrM.bed is: 0.0 = 0.0+0.0
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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137 Normalize summary graph with filtered reads for input_bed_file by total island filtered reads per million...
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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138 Convert the summary graph made with the filtered reads into wig vstep format and normalize by total island-filtered read count per million...
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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139 Done!
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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140 Additionally, these warnings were reported:
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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141 Warning: chr2 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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142 Warning: chr3 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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143 Warning: chr4 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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144 Warning: chr5 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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145 Warning: chr6 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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146 Warning: chr7 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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147 Warning: chr8 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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148 Warning: chr9 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
149 Warning: chr10 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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150 Warning: chr11 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
151 Warning: chr12 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
152 Warning: chr13 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
153 Warning: chr14 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
154 Warning: chr15 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
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diff changeset
155 Warning: chr16 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
156 Warning: chr17 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
157 Warning: chr18 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
158 Warning: chr19 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
159 Warning: chrX reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
160 Warning: chrY reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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161 Warning: chrM reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
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diff changeset
162 Warning: chr2 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
163 Warning: chr3 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
164 Warning: chr4 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
165 Warning: chr5 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
166 Warning: chr6 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
167 Warning: chr7 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
168 Warning: chr8 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
169 Warning: chr9 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
170 Warning: chr10 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
171 Warning: chr11 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
172 Warning: chr12 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
173 Warning: chr13 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
174 Warning: chr14 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
175 Warning: chr15 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
176 Warning: chr16 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
177 Warning: chr17 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
178 Warning: chr18 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
179 Warning: chr19 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
180 Warning: chrX reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
181 Warning: chrY reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
182 Warning: chrM reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
183 Warning: chr2 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
184 Warning: chr3 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
185 Warning: chr4 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
186 Warning: chr5 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
187 Warning: chr6 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
188 Warning: chr7 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
189 Warning: chr8 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
190 Warning: chr9 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
191 Warning: chr10 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
192 Warning: chr11 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
193 Warning: chr12 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
194 Warning: chr13 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
195 Warning: chr14 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
196 Warning: chr15 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
197 Warning: chr16 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
198 Warning: chr17 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
199 Warning: chr18 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
200 Warning: chr19 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
201 Warning: chrX reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
202 Warning: chrY reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
203 Warning: chrM reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
204 Warning: chr2 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
205 Warning: chr3 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
206 Warning: chr4 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
207 Warning: chr5 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
208 Warning: chr6 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
209 Warning: chr7 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
210 Warning: chr8 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
211 Warning: chr9 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
212 Warning: chr10 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
213 Warning: chr11 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
214 Warning: chr12 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
215 Warning: chr13 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
216 Warning: chr14 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
217 Warning: chr15 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
218 Warning: chr16 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
219 Warning: chr17 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
220 Warning: chr18 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
221 Warning: chr19 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
222 Warning: chrX reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
223 Warning: chrY reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
224 Warning: chrM reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
225 Warning: chr2 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
226 Warning: chr3 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
227 Warning: chr4 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
228 Warning: chr5 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
229 Warning: chr6 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
230 Warning: chr7 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
231 Warning: chr8 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
232 Warning: chr9 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
233 Warning: chr10 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
234 Warning: chr11 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
235 Warning: chr12 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
236 Warning: chr13 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
237 Warning: chr14 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
238 Warning: chr15 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
239 Warning: chr16 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
240 Warning: chr17 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
241 Warning: chr18 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
242 Warning: chr19 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
243 Warning: chrX reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
244 Warning: chrY reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
245 Warning: chrM reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
246 Warning: chr2 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
247 Warning: chr3 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
248 Warning: chr4 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
249 Warning: chr5 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
250 Warning: chr6 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
251 Warning: chr7 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
252 Warning: chr8 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
253 Warning: chr9 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
254 Warning: chr10 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
255 Warning: chr11 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
256 Warning: chr12 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
257 Warning: chr13 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
258 Warning: chr14 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
259 Warning: chr15 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
260 Warning: chr16 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
261 Warning: chr17 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
262 Warning: chr18 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
263 Warning: chr19 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
264 Warning: chrX reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
265 Warning: chrY reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
266 Warning: chrM reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
267 Warning: chr2 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
268 Warning: chr3 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
269 Warning: chr4 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
270 Warning: chr5 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
271 Warning: chr6 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
272 Warning: chr7 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
273 Warning: chr8 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
274 Warning: chr9 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
275 Warning: chr10 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
276 Warning: chr11 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
277 Warning: chr12 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
278 Warning: chr13 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
279 Warning: chr14 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
280 Warning: chr15 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
281 Warning: chr16 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
282 Warning: chr17 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
283 Warning: chr18 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
284 Warning: chr19 reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
285 Warning: chrX reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
286 Warning: chrY reads do not exist in
74c9214cc8e6 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sicer commit 4d5b98367b51a9e2f2711d1ccea9753a415d973a
devteam
parents:
diff changeset
287 Warning: chrM reads do not exist in