# HG changeset patch
# User devteam
# Date 1447264235 18000
# Node ID 5c3ac057608b092f2333a6ae9757d472ec2bf823
# Parent  72ea0d13dd664b81e21616808b9df50bb6a52d07
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/hgv/snpfreq commit a1517c9d22029095120643bbe2c8fa53754dd2b7

diff -r 72ea0d13dd66 -r 5c3ac057608b snpFreq2.pl
--- a/snpFreq2.pl	Mon Jul 28 11:56:46 2014 -0400
+++ b/snpFreq2.pl	Wed Nov 11 12:50:35 2015 -0500
@@ -90,7 +90,7 @@
    }
    close FH or die "Couldn't close $grpFile, $!\n";
    if ($file =~ /.gz$/) { 
-      open(FH, "zcat $file |") or die "Couldn't read $file, $!\n";
+      open(FH, "zcat < $file |") or die "Couldn't read $file, $!\n";
    }else {
       open(FH, $file) or die "Couldn't read $file, $!\n";
    }
diff -r 72ea0d13dd66 -r 5c3ac057608b tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Jul 28 11:56:46 2014 -0400
+++ b/tool_dependencies.xml	Wed Nov 11 12:50:35 2015 -0500
@@ -1,9 +1,9 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="bioc_qvalue" version="1.34.0">
-      <repository changeset_revision="11735242a19e" name="package_bioc_qvalue_1_34_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="11735242a19e" name="package_bioc_qvalue_1_34_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="R" version="2.11.0">
-      <repository changeset_revision="5824d2b3bc8b" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="5824d2b3bc8b" name="package_r_2_11_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>