Mercurial > repos > devteam > substitutions
annotate substitutions.xml @ 1:aca54f2b2151 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
author | devteam |
---|---|
date | Mon, 06 Jul 2020 20:34:54 -0400 |
parents | c54f5d0bbb58 |
children |
rev | line source |
---|---|
1
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
1 <tool id="substitutions1" name="Fetch substitutions " version="1.0.1"> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
2 <description> from pairwise alignments</description> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
3 <requirements> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
4 <requirement type="package" version="0.8.8">bx-python</requirement> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
5 </requirements> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
6 <command> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
7 python '$__tool_directory__/substitutions.py' |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
8 '$input' |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
9 '$out_file1' |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
10 </command> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
11 <inputs> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
12 <param format="maf" name="input" type="data" label="Select pair-wise alignment data"/> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
13 </inputs> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
14 <outputs> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
15 <data format="tabular" name="out_file1" metadata_source="input"/> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
16 </outputs> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
17 <tests> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
18 <test> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
19 <param name="input" value="Interval2Maf_pairwise_out.maf"/> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
20 <output name="out_file1" file="subs.out"/> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
21 </test> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
22 </tests> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
23 <help> |
0 | 24 |
25 .. class:: infomark | |
26 | |
27 **What it does** | |
28 | |
29 This tool takes a pairwise MAF file as input and fetches substitutions per alignment block. | |
30 | |
31 ----- | |
32 | |
33 .. class:: warningmark | |
34 | |
35 **Note** | |
36 | |
37 Any block/s not containing exactly two sequences, will be omitted. | |
38 | |
1
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
39 </help> |
aca54f2b2151
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
devteam
parents:
0
diff
changeset
|
40 </tool> |