Mercurial > repos > devteam > substitutions
comparison substitutions.xml @ 0:c54f5d0bbb58 draft
Imported from capsule None
author | devteam |
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date | Tue, 01 Apr 2014 10:50:41 -0400 |
parents | |
children | aca54f2b2151 |
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-1:000000000000 | 0:c54f5d0bbb58 |
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1 <tool id="substitutions1" name="Fetch substitutions " version="1.0.0"> | |
2 <description> from pairwise alignments</description> | |
3 <command interpreter="python"> | |
4 substitutions.py | |
5 $input | |
6 $out_file1 | |
7 </command> | |
8 <inputs> | |
9 <param format="maf" name="input" type="data" label="Select pair-wise alignment data"/> | |
10 </inputs> | |
11 <outputs> | |
12 <data format="tabular" name="out_file1" metadata_source="input"/> | |
13 </outputs> | |
14 | |
15 <tests> | |
16 <test> | |
17 <param name="input" value="Interval2Maf_pairwise_out.maf"/> | |
18 <output name="out_file1" file="subs.out"/> | |
19 </test> | |
20 </tests> | |
21 <help> | |
22 | |
23 .. class:: infomark | |
24 | |
25 **What it does** | |
26 | |
27 This tool takes a pairwise MAF file as input and fetches substitutions per alignment block. | |
28 | |
29 ----- | |
30 | |
31 .. class:: warningmark | |
32 | |
33 **Note** | |
34 | |
35 Any block/s not containing exactly two sequences, will be omitted. | |
36 | |
37 </help> | |
38 </tool> |