Mercurial > repos > devteam > substitutions
diff substitutions.xml @ 1:aca54f2b2151 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
author | devteam |
---|---|
date | Mon, 06 Jul 2020 20:34:54 -0400 |
parents | c54f5d0bbb58 |
children |
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--- a/substitutions.xml Tue Apr 01 10:50:41 2014 -0400 +++ b/substitutions.xml Mon Jul 06 20:34:54 2020 -0400 @@ -1,24 +1,26 @@ -<tool id="substitutions1" name="Fetch substitutions " version="1.0.0"> - <description> from pairwise alignments</description> - <command interpreter="python"> - substitutions.py - $input - $out_file1 - </command> - <inputs> - <param format="maf" name="input" type="data" label="Select pair-wise alignment data"/> - </inputs> - <outputs> - <data format="tabular" name="out_file1" metadata_source="input"/> - </outputs> - - <tests> - <test> - <param name="input" value="Interval2Maf_pairwise_out.maf"/> - <output name="out_file1" file="subs.out"/> - </test> - </tests> - <help> +<tool id="substitutions1" name="Fetch substitutions " version="1.0.1"> + <description> from pairwise alignments</description> + <requirements> + <requirement type="package" version="0.8.8">bx-python</requirement> + </requirements> + <command> + python '$__tool_directory__/substitutions.py' + '$input' + '$out_file1' + </command> + <inputs> + <param format="maf" name="input" type="data" label="Select pair-wise alignment data"/> + </inputs> + <outputs> + <data format="tabular" name="out_file1" metadata_source="input"/> + </outputs> + <tests> + <test> + <param name="input" value="Interval2Maf_pairwise_out.maf"/> + <output name="out_file1" file="subs.out"/> + </test> + </tests> + <help> .. class:: infomark @@ -34,5 +36,5 @@ Any block/s not containing exactly two sequences, will be omitted. - </help> -</tool> \ No newline at end of file + </help> +</tool>