comparison replace_NA.py @ 8:d4e292ddda05 draft default tip

"planemo upload for repository Nonehttps://github.com/galaxyproject/tools-devteam/tree/master/tools/table_annovar commit 68ba77da2a1f8d6cd04dd7dc6efc5edcefcfa0c9"

7:08b003ee9db7

# Close temp file so that it can be read.
temp_name = temp_out.name
temp_out.close()

# Get column type based on label or consensus.
col_types = range(len(col_type_counts))
for i, counts in enumerate(col_type_counts):
    if i in numerical_cols:
        col_type = 'number'
    elif counts[0] > counts[1]:
        col_type = 'string'

for line in open(temp_name, 'r'):
    fields = line.strip().split(SEPARATOR)
    for i, f in enumerate(fields):
        if fields[i] == TARGET and col_types[i] == 'number':
            fields[i] = str(REPLACEMENT)
    print SEPARATOR.join(fields)

# Clean up temp file.
temp_out.close()
os.unlink(temp_out.name)

8:d4e292ddda05

# Close temp file so that it can be read.
temp_name = temp_out.name
temp_out.close()

# Get column type based on label or consensus.
col_types = list(range(len(col_type_counts)))
for i, counts in enumerate(col_type_counts):
    if i in numerical_cols:
        col_type = 'number'
    elif counts[0] > counts[1]:
        col_type = 'string'

for line in open(temp_name, 'r'):
    fields = line.strip().split(SEPARATOR)
    for i, f in enumerate(fields):
        if fields[i] == TARGET and col_types[i] == 'number':
            fields[i] = str(REPLACEMENT)
    print(SEPARATOR.join(fields))

# Clean up temp file.
temp_out.close()
os.unlink(temp_out.name)