Mercurial > repos > devteam > table_annovar

changeset 6:091154194ce8 draft

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Uploaded
author devteam
date Wed, 12 Feb 2014 16:32:16 -0500
parents 7d2a81d29ca4
children 08b003ee9db7
files table_annovar.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/table_annovar.xml	Wed Feb 12 16:06:05 2014 -0500
+++ b/table_annovar.xml	Wed Feb 12 16:32:16 2014 -0500
@@ -40,7 +40,7 @@
         ; table_annovar.pl input.avinput ${__get_data_table_entry__('annovar_indexes', 'dbkey', $input.dbkey, 'path')} -protocol ${protocol} -operation ${operation} -nastring NA -buildver ${input.dbkey} --outfile output
 
         ## Process annotated table to remove "NA" strings from numerical columns and copy to output.
-        ; cat output.${input.dbkey}_multianno.txt | \$SCRIPT_PATH/replace_NA.py > ${output}
+        ; cat output.${input.dbkey}_multianno.txt | python \$SCRIPT_PATH/replace_NA.py > ${output}
     </command>
 
     <inputs>