Mercurial > repos > devteam > table_annovar
changeset 8:d4e292ddda05 draft default tip
"planemo upload for repository Nonehttps://github.com/galaxyproject/tools-devteam/tree/master/tools/table_annovar commit 68ba77da2a1f8d6cd04dd7dc6efc5edcefcfa0c9"
| author | devteam |
|---|---|
| date | Thu, 05 May 2022 13:13:11 +0000 |
| parents | 08b003ee9db7 |
| children | |
| files | replace_NA.py table_annovar.xml |
| diffstat | 2 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/replace_NA.py Wed Apr 22 23:52:01 2015 -0400 +++ b/replace_NA.py Thu May 05 13:13:11 2022 +0000 @@ -63,7 +63,7 @@ temp_out.close() # Get column type based on label or consensus. -col_types = range(len(col_type_counts)) +col_types = list(range(len(col_type_counts))) for i, counts in enumerate(col_type_counts): if i in numerical_cols: col_type = 'number' @@ -79,7 +79,7 @@ for i, f in enumerate(fields): if fields[i] == TARGET and col_types[i] == 'number': fields[i] = str(REPLACEMENT) - print SEPARATOR.join(fields) + print(SEPARATOR.join(fields)) # Clean up temp file. temp_out.close()
--- a/table_annovar.xml Wed Apr 22 23:52:01 2015 -0400 +++ b/table_annovar.xml Thu May 05 13:13:11 2022 +0000 @@ -63,21 +63,21 @@ <validator type="unspecified_build" /> </param> - <param name="gene_anns" type="select" multiple="True" optional="True" label="Gene Annotations" help="" > + <param name="gene_anns" type="select" display="checkboxes" multiple="True" optional="True" label="Gene Annotations" help="" > <options from_data_table="annovar_indexes"> <filter type="data_meta" key="dbkey" ref="input" column="1"/> <filter type="static_value" name="type" value="gene_ann" column="2"/> </options> </param> - <param name="regions" type="select" multiple="True" optional="True" label="Annotation Regions" help="" > + <param name="regions" type="select" display="checkboxes" multiple="True" optional="True" label="Annotation Regions" help="" > <options from_data_table="annovar_indexes"> <filter type="data_meta" key="dbkey" ref="input" column="1"/> <filter type="static_value" name="type" value="region" column="2"/> </options> </param> - <param name="filters" type="select" multiple="True" label="Annotation Databases" help="" > + <param name="filters" type="select" display="checkboxes" multiple="True" label="Annotation Databases" help="" > <options from_data_table="annovar_indexes"> <filter type="data_meta" key="dbkey" ref="input" column="1"/> <filter type="static_value" name="type" value="filter" column="2"/>