Mercurial > repos > devteam > tables_arithmetic_operations
diff tables_arithmetic_operations.xml @ 1:2e9f3b6ebfbc draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/tables_arithmetic_operations commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
| author | devteam |
|---|---|
| date | Thu, 22 Jun 2017 18:53:29 -0400 |
| parents | 82fa5062d611 |
| children |
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--- a/tables_arithmetic_operations.xml Tue Apr 01 10:48:45 2014 -0400 +++ b/tables_arithmetic_operations.xml Thu Jun 22 18:53:29 2017 -0400 @@ -1,60 +1,55 @@ -<tool id="tables_arithmetic_operations" name="Arithmetic Operations " version="1.0.0"> - <description>on tables</description> - - <command interpreter="perl"> - tables_arithmetic_operations.pl $inputFile1 $inputFile2 $inputArithmeticOperation3 $outputFile1 - </command> - - <inputs> - <param format="tabular" name="inputFile1" type="data" label="Select the first input tabular file"/> - <param format="tabular" name="inputFile2" type="data" label="Select the second input tabular file"/> - - <param name="inputArithmeticOperation3" type="select" label="Choose the arithmetic operation:"> - <option value="Addition">Addition</option> - <option value="Subtraction">Subtraction</option> - <option value="Multiplication">Multiplication</option> - <option value="Division">Division</option> - </param> - </inputs> - - <outputs> - <data format="tabular" name="outputFile1"/> - </outputs> - - <tests> - <test> - <param name="inputFile1" value="numericalTable1.tabular" /> - <param name="inputFile2" value="numericalTable1.tabular" /> - <param name="inputArithmeticOperation3" value="Addition" /> - <output name="outputFile1" file="table_addition_result.tabular" /> - </test> - - <test> - <param name="inputFile1" value="numericalTable1.tabular" /> - <param name="inputFile2" value="numericalTable1.tabular" /> - <param name="inputArithmeticOperation3" value="Subtraction" /> - <output name="outputFile1" file="table_subtraction_result.tabular" /> - </test> - - <test> - <param name="inputFile1" value="numericalTable1.tabular" /> - <param name="inputFile2" value="numericalTable1.tabular" /> - <param name="inputArithmeticOperation3" value="Multiplication" /> - <output name="outputFile1" file="table_multiplication_result.tabular" /> - </test> - - <test> - <param name="inputFile1" value="numericalTable1.tabular" /> - <param name="inputFile2" value="numericalTable1.tabular" /> - <param name="inputArithmeticOperation3" value="Division" /> - <output name="outputFile1" file="table_division_result.tabular" /> - </test> - - </tests> - - - <help> - +<tool id="tables_arithmetic_operations" name="Arithmetic Operations" version="1.0.0"> + <description>on tables</description> + <requirements> + <requirement type="package" version="5.22.2.1">perl</requirement> + </requirements> + <command><![CDATA[ +perl '$__tool_directory__/tables_arithmetic_operations.pl' +'$inputFile1' +'$inputFile2' +$inputArithmeticOperation3 +'$outputFile1' + ]]></command> + <inputs> + <param name="inputFile1" type="data" format="tabular" label="Select the first input tabular file"/> + <param name="inputFile2" type="data" format="tabular" label="Select the second input tabular file"/> + <param name="inputArithmeticOperation3" type="select" label="Choose the arithmetic operation:"> + <option value="Addition">Addition</option> + <option value="Subtraction">Subtraction</option> + <option value="Multiplication">Multiplication</option> + <option value="Division">Division</option> + </param> + </inputs> + <outputs> + <data name="outputFile1" format="tabular" /> + </outputs> + <tests> + <test> + <param name="inputFile1" value="numericalTable1.tabular" /> + <param name="inputFile2" value="numericalTable1.tabular" /> + <param name="inputArithmeticOperation3" value="Addition" /> + <output name="outputFile1" file="table_addition_result.tabular" /> + </test> + <test> + <param name="inputFile1" value="numericalTable1.tabular" /> + <param name="inputFile2" value="numericalTable1.tabular" /> + <param name="inputArithmeticOperation3" value="Subtraction" /> + <output name="outputFile1" file="table_subtraction_result.tabular" /> + </test> + <test> + <param name="inputFile1" value="numericalTable1.tabular" /> + <param name="inputFile2" value="numericalTable1.tabular" /> + <param name="inputArithmeticOperation3" value="Multiplication" /> + <output name="outputFile1" file="table_multiplication_result.tabular" /> + </test> + <test> + <param name="inputFile1" value="numericalTable1.tabular" /> + <param name="inputFile2" value="numericalTable1.tabular" /> + <param name="inputArithmeticOperation3" value="Division" /> + <output name="outputFile1" file="table_division_result.tabular" /> + </test> + </tests> + <help><![CDATA[ .. class:: infomark **What it does** @@ -63,11 +58,11 @@ - The first input is a TABULAR format file containing numbers only. - The second input is a TABULAR format file containing numbers only. -- The third input is an arithmetic operation: +, -, x, or / for addition, subtraction, multiplication, or division, respectively. +- The third input is an arithmetic operation: +, -, x, or / for addition, subtraction, multiplication, or division, respectively. - The output file is a TABULAR format file containing the result of implementing the arithmetic operation on both input files. -Notes: +Notes: - The two files must have the same number of columns and the same number of rows. - The output file has the same number of columns and the same number of rows as each of the two input files. @@ -77,29 +72,26 @@ Let us have the first input file as follows:: - 5 4 0 - 10 11 12 - 1 3 1 - 1 2 1 - 2 0 4 - + 5 4 0 + 10 11 12 + 1 3 1 + 1 2 1 + 2 0 4 + And the second input file as follows:: - 5 4 4 - 2 5 8 - 1 2 1 - 3 2 5 - 2 4 4 + 5 4 4 + 2 5 8 + 1 2 1 + 3 2 5 + 2 4 4 Running the program and choosing "Addition" as an arithmetic operation will give the following output:: - 10 8 4 - 12 16 20 - 2 5 2 - 4 4 6 - 4 4 8 - - - </help> - + 10 8 4 + 12 16 20 + 2 5 2 + 4 4 6 + 4 4 8 + ]]></help> </tool>