diff tool-data/tophat_fusion_blastdb.loc.sample @ 1:75845643f9dd

Requirement fixes and fixed sample loc file."

--- a/tool-data/tophat_fusion_blastdb.loc.sample	Mon Jan 27 13:16:59 2014 -0500
+++ b/tool-data/tophat_fusion_blastdb.loc.sample	Mon Jan 27 14:30:21 2014 -0500
@@ -1,37 +1,13 @@
 #This is a sample file distributed with Galaxy that is used to define a
-#list of nucleotide BLAST databases, using three columns tab separated
+#list of nucleotide BLAST databases for tophat-fusion-post, using fod columns tab separated
 #(longer whitespace are TAB characters):
 #
-#<unique_id>	<database_caption>	<base_name_path>
-#
-#The captions typically contain spaces and might end with the build date.
-#It is important that the actual database name does not have a space in
-#it, and that there are only two tabs on each line.
-#
-#So, for example, if your database is nt and the path to your base name 
-#is /depot/data2/galaxy/blastdb/nt/nt.chunk, then the blastdb.loc entry 
-#would look like this:
-#
-#nt_02_Dec_2009      nt 02 Dec 2009      /depot/data2/galaxy/blastdb/nt/nt.chunk
+#<unique_id>	<dbkey>	<name>	<path>
 #
-#and your /depot/data2/galaxy/blastdb/nt directory would contain all of 
-#your "base names" (e.g.):
-#
-#-rw-r--r--  1 wychung galaxy  23437408 2008-04-09 11:26 nt.chunk.00.nhr
-#-rw-r--r--  1 wychung galaxy   3689920 2008-04-09 11:26 nt.chunk.00.nin
-#-rw-r--r--  1 wychung galaxy 251215198 2008-04-09 11:26 nt.chunk.00.nsq
-#...etc...
+# For example:
 #
-#Your blastdb.loc file should include an entry per line for each "base name" 
-#you have stored.  For example:
-#
-#nt_02_Dec_2009		nt 02 Dec 2009		/depot/data2/galaxy/blastdb/nt/nt.chunk
-#wgs_30_Nov_2009	wgs 30 Nov 2009	/depot/data2/galaxy/blastdb/wgs/wgs.chunk
-#test_20_Sep_2008	test 20 Sep 2008	/depot/data2/galaxy/blastdb/test/test
-#...etc...
+# hg19	hg19	hg19-blast	/depot/data2/galaxy/hg19/blastdb/
 #
 #You can download the NCBI provided protein databases like NT from here:
 #ftp://ftp.ncbi.nlm.nih.gov/blast/db/
-#
-#See also blastdb_p.loc which is for any protein BLAST database, and
-#blastdb_d.loc which is for any protein domains databases (like CDD).
\ No newline at end of file
+#
\ No newline at end of file