Mercurial > repos > devteam > tophat_fusion_post
diff tophat_fusion_post.xml @ 1:75845643f9dd
Requirement fixes and fixed sample loc file."
author | devteam@galaxyproject.org |
---|---|
date | Mon, 27 Jan 2014 14:30:21 -0500 |
parents | 70f710e91120 |
children | 2f75d0317ee5 |
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--- a/tophat_fusion_post.xml Mon Jan 27 13:16:59 2014 -0500 +++ b/tophat_fusion_post.xml Mon Jan 27 14:30:21 2014 -0500 @@ -2,7 +2,8 @@ <description>post-processing to identify fusion genes</description> <version_command>tophat-fusion-post --version</version_command> <requirements> - <requirement type="package">tophat2</requirement> + <requirement type="package" version="2.2.28">blast+</requirement> + <requirement type="package" version="2.1.0">bowtie2</requirement> </requirements> <command> ## Set up tophat_out structure. @@ -24,8 +25,8 @@ --non-human #end if - ## Bowtie2 indices. - ${__get_data_table_entry__('bowtie2_indexes', 'dbkey', $accepted_hits.dbkey, 'path')} + ## Bowtie2 indices. + ${__get_data_table_entry__('bowtie2_indexes', 'dbkey', $accepted_hits.dbkey, 'path')} </command> <inputs>