Mercurial > repos > devteam > tophat_fusion_post

diff tophat_fusion_post.xml @ 1:75845643f9dd

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Requirement fixes and fixed sample loc file."
author devteam@galaxyproject.org
date Mon, 27 Jan 2014 14:30:21 -0500
parents 70f710e91120
children 2f75d0317ee5
line wrap: on
line diff
--- a/tophat_fusion_post.xml	Mon Jan 27 13:16:59 2014 -0500
+++ b/tophat_fusion_post.xml	Mon Jan 27 14:30:21 2014 -0500
@@ -2,7 +2,8 @@
     <description>post-processing to identify fusion genes</description>
     <version_command>tophat-fusion-post --version</version_command>
     <requirements>
-        <requirement type="package">tophat2</requirement>
+        <requirement type="package" version="2.2.28">blast+</requirement>
+        <requirement type="package" version="2.1.0">bowtie2</requirement>
     </requirements>
     <command>
         ## Set up tophat_out structure.
@@ -24,8 +25,8 @@
               --non-human
         #end if
 
-	## Bowtie2 indices.
-	${__get_data_table_entry__('bowtie2_indexes', 'dbkey', $accepted_hits.dbkey, 'path')}
+	    ## Bowtie2 indices.
+	    ${__get_data_table_entry__('bowtie2_indexes', 'dbkey', $accepted_hits.dbkey, 'path')}
     </command>
 
     <inputs>