Mercurial > repos > devteam > tophat_fusion_post

changeset 4:51ede4e7d4f0

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Add Tophat2 requirement.
author devteam@galaxyproject.org
date Mon, 10 Feb 2014 12:42:02 -0500
parents 2f75d0317ee5
children 0f4b4b46dbc8
files tool_dependencies.xml tophat_fusion_post.xml
diffstat 2 files changed, 5 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Feb 10 12:13:22 2014 -0500
+++ b/tool_dependencies.xml	Mon Feb 10 12:42:02 2014 -0500
@@ -3,6 +3,9 @@
     <package name="blast+" version="2.2.28">
         <repository name="package_blast_plus_2_2_28" owner="iuc"/>
     </package>
+    <package name="tophat2" version="2.0.9">
+        <repository name="package_tophat2_2_0_9" />
+    </package>
     <package name="bowtie" version="0.12.7">
         <repository name="package_bowtie_0_12_7" owner="devteam"/>
     </package>
--- a/tophat_fusion_post.xml	Mon Feb 10 12:13:22 2014 -0500
+++ b/tophat_fusion_post.xml	Mon Feb 10 12:42:02 2014 -0500
@@ -3,7 +3,8 @@
     <version_command>tophat-fusion-post --version</version_command>
     <requirements>
         <requirement type="package" version="2.2.28">blast+</requirement>
-        <requirement type='package' version="0.12.7">bowtie</requirement>
+        <requirement type="package" version="0.12.7">bowtie</requirement>
+        <requirement type="package" version="2.0.9">tophat2</requirement>
     </requirements>
     <command>
         ## Set up tophat_out structure.