# HG changeset patch
# User greg <greg@bx.psu.edu>
# Date 1364839699 14400
# Node ID e632b6c79f7b1ef6437b60d54a26f97a5aac6ac8
# Parent  f862a6e4d0964d93923513222266d947c7c4ac98
Added quotes and brackets to appropriate command arguments

diff -r f862a6e4d096 -r e632b6c79f7b trimmer.xml
--- a/trimmer.xml	Tue Dec 04 11:10:05 2012 -0500
+++ b/trimmer.xml	Mon Apr 01 14:08:19 2013 -0400
@@ -1,7 +1,7 @@
 <tool id="trimmer" name="Trim" version="0.0.1">
     <description>leading or trailing characters</description>
     <command interpreter="python">
-    trimmer.py -a -f $input1 -c $col -s $start -e $end -i $ignore $fastq > $out_file1
+    trimmer.py -a -f "${input1}" -c "${col}" -s "${start}" -e "${end}" -i "${ignore}" "${fastq}" > "${out_file1}"
     </command>
     <inputs>
         <param format="tabular,txt" name="input1" type="data" label="this dataset"/>