Mercurial > repos > devteam > vcf2tsv

annotate test-data/vcf2tsv-test1.tab @ 4:285060661b45 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
author iuc
date Thu, 23 Jan 2020 08:00:49 -0500
parents 8fb92fcd20ae
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
1 #CHROM POS ID REF ALT QUAL FILTER AA AC AF AN DB DP H2 NS SAMPLE DP GQ GT HQ
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
2 19 111 . A C 9.6 . . . . . . . . . NA00001 . . 0|0 10,10
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
3 19 111 . A C 9.6 . . . . . . . . . NA00002 . . 0|0 10,10
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
4 19 111 . A C 9.6 . . . . . . . . . NA00003 . . 0/1 3,3
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
5 19 112 . A G 10 . . . . . . . . . NA00001 . . 0|0 10,10
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
6 19 112 . A G 10 . . . . . . . . . NA00002 . . 0|0 10,10
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
7 19 112 . A G 10 . . . . . . . . . NA00003 . . 0/1 3,3
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
8 20 14370 rs6054257 G A 29 PASS . . 0.5 . . 14 . 3 NA00001 1 48 0|0 51,51
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
9 20 14370 rs6054257 G A 29 PASS . . 0.5 . . 14 . 3 NA00002 8 48 1|0 51,51
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
10 20 14370 rs6054257 G A 29 PASS . . 0.5 . . 14 . 3 NA00003 5 43 1/1 .,.
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
11 20 17330 . T A 3 q10 . . 0.017 . . 11 . 3 NA00001 3 49 0|0 58,50
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
12 20 17330 . T A 3 q10 . . 0.017 . . 11 . 3 NA00002 5 3 0|1 65,3
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
13 20 17330 . T A 3 q10 . . 0.017 . . 11 . 3 NA00003 3 41 0/0 .,.
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
14 20 1110696 rs6040355 A G 67 PASS T . 0.333,0.667 . . 10 . 2 NA00001 6 21 1|2 23,27
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
15 20 1110696 rs6040355 A G 67 PASS T . 0.333,0.667 . . 10 . 2 NA00002 0 2 2|1 18,2
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
16 20 1110696 rs6040355 A G 67 PASS T . 0.333,0.667 . . 10 . 2 NA00003 4 35 2/2 .,.
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
17 20 1110696 rs6040355 A T 67 PASS T . 0.333,0.667 . . 10 . 2 NA00001 6 21 1|2 23,27
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
18 20 1110696 rs6040355 A T 67 PASS T . 0.333,0.667 . . 10 . 2 NA00002 0 2 2|1 18,2
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
19 20 1110696 rs6040355 A T 67 PASS T . 0.333,0.667 . . 10 . 2 NA00003 4 35 2/2 .,.
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
20 20 1230237 . T . 47 PASS T . . . . 13 . 3 NA00001 . 54 0|0 56,60
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
21 20 1230237 . T . 47 PASS T . . . . 13 . 3 NA00002 4 48 0|0 51,51
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
22 20 1230237 . T . 47 PASS T . . . . 13 . 3 NA00003 2 61 0/0 .,.
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
23 20 1234567 microsat1 G GA 50 PASS G 3,1 . 6 . 9 . 3 NA00001 4 . 0/1 .
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
24 20 1234567 microsat1 G GA 50 PASS G 3,1 . 6 . 9 . 3 NA00002 2 17 0/2 .
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
25 20 1234567 microsat1 G GA 50 PASS G 3,1 . 6 . 9 . 3 NA00003 3 40 1/1 .
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
26 20 1234567 microsat1 G GAC 50 PASS G 3,1 . 6 . 9 . 3 NA00001 4 . 0/1 .
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
27 20 1234567 microsat1 G GAC 50 PASS G 3,1 . 6 . 9 . 3 NA00002 2 17 0/2 .
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
28 20 1234567 microsat1 G GAC 50 PASS G 3,1 . 6 . 9 . 3 NA00003 3 40 1/1 .
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
29 20 1235237 . T . 0 . . . . . . . . . NA00001 . . 0/0 .
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
30 20 1235237 . T . 0 . . . . . . . . . NA00002 . . 0|0 .
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
31 20 1235237 . T . 0 . . . . . . . . . NA00003 . . ./. .
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
32 X 10 rsTest AC A 10 PASS . . . . . . . . NA00001 . . 0 .
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
33 X 10 rsTest AC A 10 PASS . . . . . . . . NA00002 . . 0/1 .
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
34 X 10 rsTest AC A 10 PASS . . . . . . . . NA00003 . . 0|2 .
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
35 X 10 rsTest AC ATG 10 PASS . . . . . . . . NA00001 . . 0 .
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
36 X 10 rsTest AC ATG 10 PASS . . . . . . . . NA00002 . . 0/1 .
285060661b45 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
parents: 2
diff changeset
37 X 10 rsTest AC ATG 10 PASS . . . . . . . . NA00003 . . 0|2 .