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comparison test-data/vcf2tsv-test1.tab @ 4:285060661b45 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcf2tsv commit 36e9065027cc7bf721e9d203208477ee88906c57"
author iuc
date Thu, 23 Jan 2020 08:00:49 -0500
parents 8fb92fcd20ae
children
comparison
equal deleted inserted replaced
3:e92b3c0f9224 4:285060661b45
1 CHROM POS ID REF ALT QUAL FILTER AA AC AF AN DP NS DB H2 SAMPLE DP GQ GT HQ 1 #CHROM POS ID REF ALT QUAL FILTER AA AC AF AN DB DP H2 NS SAMPLE DP GQ GT HQ
2 19 111 . A C 9.6 . . . . . . . 0 0 NA00001 . . 0|0 10,10 2 19 111 . A C 9.6 . . . . . . . . . NA00001 . . 0|0 10,10
3 19 111 . A C 9.6 . . . . . . . 0 0 NA00002 . . 0|0 10,10 3 19 111 . A C 9.6 . . . . . . . . . NA00002 . . 0|0 10,10
4 19 111 . A C 9.6 . . . . . . . 0 0 NA00003 . . 0/1 3,3 4 19 111 . A C 9.6 . . . . . . . . . NA00003 . . 0/1 3,3
5 19 112 . A G 10 . . . . . . . 0 0 NA00001 . . 0|0 10,10 5 19 112 . A G 10 . . . . . . . . . NA00001 . . 0|0 10,10
6 19 112 . A G 10 . . . . . . . 0 0 NA00002 . . 0|0 10,10 6 19 112 . A G 10 . . . . . . . . . NA00002 . . 0|0 10,10
7 19 112 . A G 10 . . . . . . . 0 0 NA00003 . . 0/1 3,3 7 19 112 . A G 10 . . . . . . . . . NA00003 . . 0/1 3,3
8 20 14370 rs6054257 G A 29 PASS . . 0.5 . 14 3 1 1 NA00001 1 48 0|0 51,51 8 20 14370 rs6054257 G A 29 PASS . . 0.5 . . 14 . 3 NA00001 1 48 0|0 51,51
9 20 14370 rs6054257 G A 29 PASS . . 0.5 . 14 3 1 1 NA00002 8 48 1|0 51,51 9 20 14370 rs6054257 G A 29 PASS . . 0.5 . . 14 . 3 NA00002 8 48 1|0 51,51
10 20 14370 rs6054257 G A 29 PASS . . 0.5 . 14 3 1 1 NA00003 5 43 1/1 .,. 10 20 14370 rs6054257 G A 29 PASS . . 0.5 . . 14 . 3 NA00003 5 43 1/1 .,.
11 20 17330 . T A 3 q10 . . 0.017 . 11 3 0 0 NA00001 3 49 0|0 58,50 11 20 17330 . T A 3 q10 . . 0.017 . . 11 . 3 NA00001 3 49 0|0 58,50
12 20 17330 . T A 3 q10 . . 0.017 . 11 3 0 0 NA00002 5 3 0|1 65,3 12 20 17330 . T A 3 q10 . . 0.017 . . 11 . 3 NA00002 5 3 0|1 65,3
13 20 17330 . T A 3 q10 . . 0.017 . 11 3 0 0 NA00003 3 41 0/0 .,. 13 20 17330 . T A 3 q10 . . 0.017 . . 11 . 3 NA00003 3 41 0/0 .,.
14 20 1110696 rs6040355 A G,T 67 PASS T . 0.333,0.667 . 10 2 1 0 NA00001 6 21 1|2 23,27 14 20 1110696 rs6040355 A G 67 PASS T . 0.333,0.667 . . 10 . 2 NA00001 6 21 1|2 23,27
15 20 1110696 rs6040355 A G,T 67 PASS T . 0.333,0.667 . 10 2 1 0 NA00002 0 2 2|1 18,2 15 20 1110696 rs6040355 A G 67 PASS T . 0.333,0.667 . . 10 . 2 NA00002 0 2 2|1 18,2
16 20 1110696 rs6040355 A G,T 67 PASS T . 0.333,0.667 . 10 2 1 0 NA00003 4 35 2/2 .,. 16 20 1110696 rs6040355 A G 67 PASS T . 0.333,0.667 . . 10 . 2 NA00003 4 35 2/2 .,.
17 20 1230237 . T . 47 PASS T . . . 13 3 0 0 NA00001 . 54 0|0 56,60 17 20 1110696 rs6040355 A T 67 PASS T . 0.333,0.667 . . 10 . 2 NA00001 6 21 1|2 23,27
18 20 1230237 . T . 47 PASS T . . . 13 3 0 0 NA00002 4 48 0|0 51,51 18 20 1110696 rs6040355 A T 67 PASS T . 0.333,0.667 . . 10 . 2 NA00002 0 2 2|1 18,2
19 20 1230237 . T . 47 PASS T . . . 13 3 0 0 NA00003 2 61 0/0 .,. 19 20 1110696 rs6040355 A T 67 PASS T . 0.333,0.667 . . 10 . 2 NA00003 4 35 2/2 .,.
20 20 1234567 microsat1 G GA,GAC 50 PASS G 3,1 . 6 9 3 0 0 NA00001 4 . 0/1 . 20 20 1230237 . T . 47 PASS T . . . . 13 . 3 NA00001 . 54 0|0 56,60
21 20 1234567 microsat1 G GA,GAC 50 PASS G 3,1 . 6 9 3 0 0 NA00002 2 17 0/2 . 21 20 1230237 . T . 47 PASS T . . . . 13 . 3 NA00002 4 48 0|0 51,51
22 20 1234567 microsat1 G GA,GAC 50 PASS G 3,1 . 6 9 3 0 0 NA00003 3 40 1/1 . 22 20 1230237 . T . 47 PASS T . . . . 13 . 3 NA00003 2 61 0/0 .,.
23 20 1235237 . T . 0 . . . . . . . 0 0 NA00001 . . 0/0 . 23 20 1234567 microsat1 G GA 50 PASS G 3,1 . 6 . 9 . 3 NA00001 4 . 0/1 .
24 20 1235237 . T . 0 . . . . . . . 0 0 NA00002 . . 0|0 . 24 20 1234567 microsat1 G GA 50 PASS G 3,1 . 6 . 9 . 3 NA00002 2 17 0/2 .
25 20 1235237 . T . 0 . . . . . . . 0 0 NA00003 . . ./. . 25 20 1234567 microsat1 G GA 50 PASS G 3,1 . 6 . 9 . 3 NA00003 3 40 1/1 .
26 X 10 rsTest AC A,ATG 10 PASS . . . . . . 0 0 NA00001 . . 0 . 26 20 1234567 microsat1 G GAC 50 PASS G 3,1 . 6 . 9 . 3 NA00001 4 . 0/1 .
27 X 10 rsTest AC A,ATG 10 PASS . . . . . . 0 0 NA00002 . . 0/1 . 27 20 1234567 microsat1 G GAC 50 PASS G 3,1 . 6 . 9 . 3 NA00002 2 17 0/2 .
28 X 10 rsTest AC A,ATG 10 PASS . . . . . . 0 0 NA00003 . . 0|2 . 28 20 1234567 microsat1 G GAC 50 PASS G 3,1 . 6 . 9 . 3 NA00003 3 40 1/1 .
29 20 1235237 . T . 0 . . . . . . . . . NA00001 . . 0/0 .
30 20 1235237 . T . 0 . . . . . . . . . NA00002 . . 0|0 .
31 20 1235237 . T . 0 . . . . . . . . . NA00003 . . ./. .
32 X 10 rsTest AC A 10 PASS . . . . . . . . NA00001 . . 0 .
33 X 10 rsTest AC A 10 PASS . . . . . . . . NA00002 . . 0/1 .
34 X 10 rsTest AC A 10 PASS . . . . . . . . NA00003 . . 0|2 .
35 X 10 rsTest AC ATG 10 PASS . . . . . . . . NA00001 . . 0 .
36 X 10 rsTest AC ATG 10 PASS . . . . . . . . NA00002 . . 0/1 .
37 X 10 rsTest AC ATG 10 PASS . . . . . . . . NA00003 . . 0|2 .