# HG changeset patch
# User devteam
# Date 1390832886 18000
# Node ID b001b50f20093a4d012a142619e94d63410b8353

Imported from capsule None

diff -r 000000000000 -r b001b50f2009 annotate.py
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/annotate.py	Mon Jan 27 09:28:06 2014 -0500
@@ -0,0 +1,163 @@
+#!/usr/bin/python
+
+import os.path
+import sys
+import optparse
+
+import vcfClass
+from vcfClass import *
+
+import tools
+from tools import *
+
+if __name__ == "__main__":
+  main()
+
+# Check that the reference and alternate in the dbsnp vcf file match those
+# from the input vcf file.
+def checkRefAlt(vcfRef, vcfAlt, dbsnpRef, dbsnpAlt, ref, position, annotation):
+  text = "WARNING: ref and alt alleles differ between vcf and " + annotation + " " + ref + ":" + str(position) + " vcf: " + \
+         vcfRef + "/" + vcfAlt + ", dbsnp: " + dbsnpRef + "/" + dbsnpAlt
+
+  allelesAgree = True
+  if vcfRef.lower() != dbsnpRef.lower():
+    if vcfRef.lower() != dbsnpAlt.lower():
+      #print >> sys.stderr, text
+      allelesAgree = False
+  else:
+    if vcfAlt.lower() != dbsnpAlt.lower():
+      #print >> sys.stderr, text
+      allelesAgree = False
+
+  return allelesAgree
+
+# Intersect two vcf files.  It is assumed that the two files are
+# sorted by genomic coordinates and the reference sequences are
+# in the same order.
+def annotateVcf(v, d, outputFile, annotation):
+  success1 = v.getRecord()
+  success2 = d.getRecord()
+  currentReferenceSequence = v.referenceSequence
+
+# Finish when the end of the first file has been reached.
+  while success1:
+
+# If the end of the dbsnp vcf file is reached, write out the
+# remaining records from the vcf file.
+    if not success2:
+      outputFile.write(v.record)
+      success1 = v.getRecord()
+
+    if v.referenceSequence == d.referenceSequence and v.referenceSequence == currentReferenceSequence:
+      if v.position == d.position:
+        allelesAgree = checkRefAlt(v.ref, v.alt, d.ref, d.alt, v.referenceSequence, v.position, annotation)
+        if annotation == "dbsnp": v.rsid = d.getDbsnpInfo()
+        elif annotation == "hapmap":
+          if allelesAgree: v.info += ";HM3"
+          else: v.info += ";HM3A"
+        record = v.buildRecord(False)
+        outputFile.write(record)
+
+        success1 = v.getRecord()
+        success2 = d.getRecord()
+      elif d.position > v.position: success1 = v.parseVcf(d.referenceSequence, d.position, True, outputFile)
+      elif v.position > d.position: success2 = d.parseVcf(v.referenceSequence, v.position, False, None)
+    else:
+      if v.referenceSequence == currentReferenceSequence: success1 = v.parseVcf(d.referenceSequence, d.position, True, outputFile)
+      elif d.referenceSequence == currentReferenceSequence: success2 = d.parseVcf(v.referenceSequence, v.position, False, None)
+
+# If the last record for a reference sequence is the same for both vcf
+# files, they will both have referenceSequences different from the
+# current reference sequence.  Change the reference sequence to reflect
+# this and proceed.
+      else:
+        if v.referenceSequence != d.referenceSequence:
+          print >> sys.stderr, "ERROR: Reference sequences for both files are unexpectedly different."
+          print >> sys.stderr, "Check that both files contain records for the following reference sequences:"
+          print >> sys.stderr, "\t", v.referenceSequence, " and ", d.referenceSequence
+          exit(1)
+      currentReferenceSequence = v.referenceSequence
+
+def main():
+
+# Parse the command line options
+  usage = "Usage: vcfPytools.py annotate [options]"
+  parser = optparse.OptionParser(usage = usage)
+  parser.add_option("-i", "--in",
+                    action="store", type="string",
+                    dest="vcfFile", help="input vcf files")
+  parser.add_option("-d", "--dbsnp",
+                    action="store", type="string",
+                    dest="dbsnpFile", help="input dbsnp vcf file")
+  parser.add_option("-m", "--hapmap",
+                    action="store", type="string",
+                    dest="hapmapFile", help="input hapmap vcf file")
+  parser.add_option("-o", "--out",
+                    action="store", type="string",
+                    dest="output", help="output vcf file")
+
+  (options, args) = parser.parse_args()
+
+# Check that a single  vcf file is given.
+  if options.vcfFile == None:
+    parser.print_help()
+    print >> sys.stderr, "\nInput vcf file (--in, -i) is required for dbsnp annotation."
+    exit(1)
+
+# Check that either a hapmap or a dbsnp vcf file is included.
+  if options.dbsnpFile == None and options.hapmapFile == None:
+    parser.print_help()
+    print >> sys.stderr, "\ndbSNP or hapmap vcf file is required (--dbsnp, -d, --hapmap, -h)."
+    exit(1)
+  elif options.dbsnpFile != None and options.hapmapFile != None:
+    parser.print_help()
+    print >> sys.stderr, "\ndbSNP or hapmap vcf file is required, not both (--dbsnp, -d, --hapmap, -h)."
+    exit(1)
+
+# Set the output file to stdout if no output file was specified.
+  outputFile, writeOut = setOutput(options.output) # tools.py
+
+  v = vcf() # Define vcf object.
+  d = vcf() # Define dbsnp/hapmap vcf object.
+  if options.dbsnpFile:
+    d.dbsnpVcf = True
+    annotationFile = options.dbsnpFile
+    annotation = "dbsnp"
+  elif options.hapmapFile:
+    d.hapmapVcf = True
+    annotationFile = options.hapmapFile
+    annotation = "hapmap"
+
+# Open the vcf files.
+  v.openVcf(options.vcfFile)
+  d.openVcf(annotationFile)
+
+# Read in the header information.
+  v.parseHeader(options.vcfFile, writeOut)
+  d.parseHeader(annotationFile, writeOut)
+
+# Add an extra line to the vcf header to indicate the file used for
+# performing dbsnp annotation.
+  taskDescriptor = "##vcfPytools=annotated vcf file with "
+  if options.dbsnpFile: taskDescriptor += "dbSNP file " + options.dbsnpFile
+  elif options.hapmapFile:
+    taskDescriptor += "hapmap file " + options.hapmapFile
+    v.infoHeaderString["HM3"] = "##INFO=<ID=HM3,Number=0,Type=Flag,Description=\"Hapmap3.2 membership determined from file " + \
+                                options.hapmapFile + "\">"
+    v.infoHeaderString["HM3A"] = "##INFO=<ID=HM3A,Number=0,Type=Flag,Description=\"Hapmap3.2 membership (with different alleles)" + \
+                                 ", determined from file " + options.hapmapFile + "\">"
+  writeHeader(outputFile, v, False, taskDescriptor) # tools.py
+
+# Annotate the vcf file.
+  annotateVcf(v, d, outputFile, annotation)
+
+# Check that the input files had the same list of reference sequences.
+# If not, it is possible that there were some problems.
+  checkReferenceSequenceLists(v.referenceSequenceList, d.referenceSequenceList) # tools.py
+
+# Close the vcf files.
+  v.closeVcf(options.vcfFile)
+  d.closeVcf(annotationFile)
+
+# End the program.
+  return 0
diff -r 000000000000 -r b001b50f2009 annotate.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/annotate.xml	Mon Jan 27 09:28:06 2014 -0500
@@ -0,0 +1,62 @@
+<tool id="vcf_annotate" name="Annotate" version="1.0.0">
+  <description>a VCF file (dbSNP, hapmap)</description>
+  <command interpreter="python">
+    vcfPytools.py
+      annotate 
+      --in=$input1
+      #if $annotation_options.annotate == "dbsnp"
+      --dbsnp=$input2
+      #elif $annotation_options.annotate == "hapmap"
+      --hapmap=$input2
+      #end if
+      --out=$output1
+  </command>
+  <inputs>
+    <param name="input1" label="VCF file to annotate" type="data" format="vcf" />
+    <conditional name="annotation_options">
+      <param name="annotate" type="select" label="annotation source">
+        <option value="dbsnp">dbSNP vcf file</option>
+        <option value="hapmap">hapmap vcf file</option>
+      </param>
+      <when value="dbsnp">
+        <param name="input2" label="dbSNP vcf file" type="data" format="vcf" help="This option will annotate the vcf file with dbSNP rsid values.  The input dbSNP file must also be in vcf v4.0 format.  Only dbSNP entries with VC=SNP are included."/>
+      </when>
+      <when value="hapmap">
+        <param name="input2" label="hapmap vcf file" type="data" format="vcf" help="This option will annotate the vcf file info string to include HM3 if the record is included hapmap.  If the ref/alt values do not match the hapmap file, the info string will be populated with HM3A."/>
+      </when>
+    </conditional>
+  </inputs>
+  <outputs>
+    <data format="vcf" name="output1" label="${tool.name} ${on_string}" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="input1" value="test.small.vcf" ftype="vcf" />
+      <param name="annotate" value="dbsnp" />
+      <param name="input2" value="dbsnp.small.vcf" ftype="vcf" />
+      <output name="output" file="test_annotated_dbsnp.vcf" lines_diff="6" ftype="vcf" />
+    </test>
+    <test>
+      <param name="input1" value="test.small.vcf" ftype="vcf" />
+      <param name="annotate" value="hapmap" />
+      <param name="input2" value="hapmap.small.vcf" ftype="vcf" />
+      <output name="output" file="test_annotated_hapmap.vcf" lines_diff="6" ftype="vcf" />
+    </test>
+  </tests>
+  <help>
+
+**What it does**
+
+This tool uses vcfPytools_' annotate command annotate a VCF file
+
+.. _vcfPytools: https://github.com/AlistairNWard/vcfPytools
+
+Currently, either a hapmap or a dbsnp file should be provided, not both.
+
+dbSNP option will annotate the VCF file with dbSNP rsid values.  The input dbSNP file must also be in VCF v4.0 format.  Only dbSNP entries with VC=SNP are included.
+
+hapmap option will annotate the VCF file info string to include HM3 if the record is included hapmap.  If the ref/alt values do not match the hapmap file, the info string will be populated with HM3A.
+
+
+  </help>
+</tool>
\ No newline at end of file
diff -r 000000000000 -r b001b50f2009 bedClass.py
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bedClass.py	Mon Jan 27 09:28:06 2014 -0500
@@ -0,0 +1,80 @@
+#!/usr/bin/python
+
+import os.path
+import sys
+
+class bed:
+  def __init__(self):
+    self.numberTargets = 0
+    self.referenceSequences = {}
+    self.referenceSequenceList = []
+
+  def openBed(self, filename):
+    if filename == "stdin": self.filehandle = sys.stdin
+    else:
+      try: self.filehandle = open(filename,"r")
+      except IOError:
+        print >> sys.stderr, "Failed to find file: ",filename
+        exit(1)
+
+# Get a bed record.
+  def getRecord(self):
+    self.record = self.filehandle.readline()
+    if not self.record: return False
+
+    self.numberTargets = self.numberTargets + 1
+    self.ref = ""
+    self.start = 0
+    self.end = 0
+
+# bed file should be 0-based, half-open, so the start coordinate
+# must be that in the bed file plus one.
+    entries = self.record.rstrip("\n").split("\t")
+    self.referenceSequence = entries[0]
+
+# Add the reference sequence to the dictionary.  If it didn't previously
+# exist append the reference sequence to the end of the list as well. 
+# This ensures that the order in which the reference sequences appeared
+# in the header can be preserved.
+    if self.referenceSequence not in self.referenceSequences:
+      self.referenceSequences[self.referenceSequence] = True
+      self.referenceSequenceList.append(self.referenceSequence)
+
+    try: self.start = int(entries[1]) + 1
+    except:
+      text = "start position need is not an integer"
+      self.generalError(text, "start", entries[1])
+
+    try: self.end = int(entries[2])
+    except:
+      text = "end position need is not an integer"
+      self.generalError(text, "end", entries[2])
+
+# Check that the record is a valid interval.
+    if self.end - self.start < 0:
+      print >> sys.stderr, "Invalid target interval:\n\t", self.record
+      exit(1)
+
+    return True
+
+# Parse through the bed file until the correct reference sequence is
+# encountered and the end position is greater than or equal to that requested.
+  def parseBed(self, referenceSequence, position):
+    success = True
+    if self.referenceSequence != referenceSequence:
+      while self.referenceSequence != referenceSequence and success: success = self.getRecord()
+
+    while self.referenceSequence == referenceSequence and self.end < position and success: success = self.getRecord()
+
+    return success
+
+# Close the bed file.
+  def closeBed(self, filename):
+    self.filehandle.close()
+
+# Define error messages for different handled errors.
+  def generalError(self, text, field, fieldValue):
+    print >> sys.stderr, "\nError encountered when attempting to read:"
+    if field != "": print >> sys.stderr, "\t", field, ":             ", fieldValue
+    print >> sys.stderr,  "\n", text
+    exit(1)
diff -r 000000000000 -r b001b50f2009 test-data/dbsnp.small.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/dbsnp.small.vcf	Mon Jan 27 09:28:06 2014 -0500
@@ -0,0 +1,5000 @@
+20	60572	rs28753379	C	T	.	.	VC=SNP
+20	60646	rs28579812	C	T	.	.	VC=SNP
+20	61098	rs6078030	C	T	.	.	VC=SNP
+20	61795	rs4814683	G	T	.	.	VC=SNP
+20	62100	rs6047235	C	T	.	.	VC=SNP
+20	62731	rs34147676	A	C	.	.	VC=SNP
+20	63231	rs6076506	G	T	.	.	VC=SNP
+20	63244	rs6139074	A	C	.	.	VC=SNP
+20	63799	rs1418258	C	T	.	.	VC=SNP
+20	64150	rs7274499	A	C	.	.	VC=SNP
+20	64510	rs6076701	C	T	.	.	VC=SNP
+20	64934	rs6116610	A	G	.	.	VC=SNP
+20	64942	rs6084963	A	G	.	.	VC=SNP
+20	65000	rs34190528	A	G	.	.	VC=SNP
+20	65288	rs13043000	G	T	.	.	VC=SNP
+20	65900	rs6053810	A	G	.	.	VC=SNP
+20	66370	rs6054257	A	G	.	.	VC=SNP
+20	66658	rs6140075	A	T	.	.	VC=SNP
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+20	70980	rs60263736	A	G	.	.	VC=SNP
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+20	71093	rs6040395	A	G	.	.	VC=SNP
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+20	72632	rs60387861	G	T	.	.	VC=SNP
+20	72694	rs6033515	C	T	.	.	VC=SNP
+20	72719	rs11698144	C	T	.	.	VC=SNP
+20	72821	rs6033543	C	T	.	.	VC=SNP
+20	72892	rs16987437	A	G	.	.	VC=SNP
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+20	83196	rs62190472	A	T	.	.	VC=SNP
+20	83252	rs6137896	C	G	.	.	VC=SNP
+20	83265	rs6137900	C	T	.	.	VC=SNP
+20	83570	rs6048967	G	T	.	.	VC=SNP
+20	84652	rs6138356	C	T	.	.	VC=SNP
+20	84750	rs2316216	C	G	.	.	VC=SNP
+20	84751	rs2316217	A	T	.	.	VC=SNP
+20	84752	rs2316218	C	T	.	.	VC=SNP
+20	84754	rs2873102	C	T	.	.	VC=SNP
+20	84755	rs2316219	A	C	.	.	VC=SNP
+20	84756	rs2873103	C	T	.	.	VC=SNP
+20	84758	rs2316220	A	T	.	.	VC=SNP
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+20	84760	rs2316222	A	C	.	.	VC=SNP
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+20	84769	rs6138387	C	T	.	.	VC=SNP
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+20	85116	rs7268260	C	T	.	.	VC=SNP
+20	85337	rs34284695	A	C	.	.	VC=SNP
+20	87112	rs34383360	A	G	.	.	VC=SNP
+20	87416	rs1935386	A	C	.	.	VC=SNP
+20	88827	rs6051504	A	C	.	.	VC=SNP
+20	89158	rs6115754	C	T	.	.	VC=SNP
+20	89265	rs6107219	C	T	.	.	VC=SNP
+20	89326	rs6107220	C	T	.	.	VC=SNP
+20	90008	rs1858595	G	T	.	.	VC=SNP
+20	90984	rs1077784	C	T	.	.	VC=SNP
+20	91088	rs2002370	A	G	.	.	VC=SNP
+20	91227	rs6107256	C	T	.	.	VC=SNP
+20	91346	rs11698455	A	G	.	.	VC=SNP
+20	91508	rs6051659	A	G	.	.	VC=SNP
+20	91707	rs8122066	C	T	.	.	VC=SNP
+20	92366	rs13039134	A	G	.	.	VC=SNP
+20	92527	rs1418260	C	T	.	.	VC=SNP
+20	92891	rs6051804	A	G	.	.	VC=SNP
+20	93169	rs6051834	C	T	.	.	VC=SNP
+20	93440	rs6051847	A	G	.	.	VC=SNP
+20	93499	rs6051856	C	T	.	.	VC=SNP
+20	93620	rs3905140	A	G	.	.	VC=SNP
+20	93651	rs13045585	C	T	.	.	VC=SNP
+20	93652	rs13045586	C	T	.	.	VC=SNP
+20	93684	rs6037600	A	G	.	.	VC=SNP
+20	93931	rs6051884	A	G	.	.	VC=SNP
+20	94091	rs6051892	C	T	.	.	VC=SNP
+20	94528	rs59920385	G	T	.	.	VC=SNP
+20	94592	rs60976651	A	T	.	.	VC=SNP
+20	94952	rs1857092	G	T	.	.	VC=SNP
+20	95093	rs6037629	G	T	.	.	VC=SNP
+20	96621	rs6076549	C	T	.	.	VC=SNP
+20	96773	rs6107340	C	T	.	.	VC=SNP
+20	96931	rs6052070	A	G	.	.	VC=SNP
+20	97122	rs6515824	C	T	.	.	VC=SNP
+20	97394	rs6052094	A	G	.	.	VC=SNP
+20	98189	rs6107366	C	T	.	.	VC=SNP
+20	98930	rs6116135	A	G	.	.	VC=SNP
+20	99385	rs4142302	G	T	.	.	VC=SNP
+20	100066	rs62190473	A	G	.	.	VC=SNP
+20	100272	rs6052354	C	T	.	.	VC=SNP
+20	100495	rs6052380	A	G	.	.	VC=SNP
+20	100505	rs6037772	C	T	.	.	VC=SNP
+20	100699	rs6116236	C	T	.	.	VC=SNP
+20	101362	rs6139361	A	G	.	.	VC=SNP
+20	101736	rs920006	A	G	.	.	VC=SNP
+20	101787	rs920005	A	G	.	.	VC=SNP
+20	101905	rs1342843	C	G	.	.	VC=SNP
+20	102181	rs6052493	C	T	.	.	VC=SNP
+20	102203	rs6116301	C	T	.	.	VC=SNP
+20	102799	rs6107455	A	G	.	.	VC=SNP
+20	103161	rs6139413	A	G	.	.	VC=SNP
+20	103517	rs3968581	A	T	.	.	VC=SNP
+20	104459	rs6037861	C	T	.	.	VC=SNP
+20	104462	rs6052614	C	T	.	.	VC=SNP
+20	104520	rs6052623	A	G	.	.	VC=SNP
+20	104534	rs6116404	C	T	.	.	VC=SNP
+20	104899	rs6116429	C	T	.	.	VC=SNP
+20	106635	rs4813713	A	G	.	.	VC=SNP
+20	106704	rs6052831	C	T	.	.	VC=SNP
+20	107160	rs8115570	C	G	.	.	VC=SNP
+20	107201	rs6116516	A	G	.	.	VC=SNP
+20	107457	rs6037980	C	T	.	.	VC=SNP
+20	107613	rs6037984	G	T	.	.	VC=SNP
+20	107629	rs6052924	C	T	.	.	VC=SNP
+20	107841	rs6084921	C	T	.	.	VC=SNP
+20	107846	rs6084922	C	T	.	.	VC=SNP
+20	107858	rs6084923	C	T	.	.	VC=SNP
+20	108112	rs6076752	C	T	.	.	VC=SNP
+20	108187	rs6038013	A	G	.	.	VC=SNP
+20	108286	rs6116576	G	T	.	.	VC=SNP
+20	108306	rs6116578	A	G	.	.	VC=SNP
+20	108328	rs1954267	A	C	.	.	VC=SNP
+20	108949	rs6053004	G	T	.	.	VC=SNP
+20	108958	rs34635961	A	C	.	.	VC=SNP
+20	109178	rs62190474	A	C	.	.	VC=SNP
+20	109179	rs11697962	C	T	.	.	VC=SNP
+20	109272	rs6038037	C	G	.	.	VC=SNP
+20	109288	rs6053032	C	G	.	.	VC=SNP
+20	109377	rs11700281	A	C	.	.	VC=SNP
+20	110058	rs6053093	C	G	.	.	VC=SNP
+20	110098	rs6053101	A	G	.	.	VC=SNP
+20	110416	rs6053123	A	G	.	.	VC=SNP
+20	110702	rs8124420	C	T	.	.	VC=SNP
+20	110761	rs62190475	A	G	.	.	VC=SNP
+20	110768	rs4815766	G	T	.	.	VC=SNP
+20	110875	rs57572545	C	T	.	.	VC=SNP
+20	110970	rs13045727	A	G	.	.	VC=SNP
+20	110979	rs8118833	A	C	.	.	VC=SNP
+20	110980	rs13042427	C	T	.	.	VC=SNP
+20	111211	rs62190476	A	G	.	.	VC=SNP
+20	111277	rs62190477	C	T	.	.	VC=SNP
+20	111377	rs55769048	A	C	.	.	VC=SNP
+20	111383	rs9969393	C	T	.	.	VC=SNP
+20	111383	rs56247714	C	T	.	.	VC=SNP
+20	111677	rs62428966	G	T	.	.	VC=SNP
+20	111834	rs28847590	A	G	.	.	VC=SNP
+20	111871	rs9808599	A	G	.	.	VC=SNP
+20	111890	rs9753736	G	T	.	.	VC=SNP
+20	112120	rs28877129	A	G	.	.	VC=SNP
+20	112516	rs61987786	A	T	.	.	VC=SNP
+20	112616	rs6053327	A	G	.	.	VC=SNP
+20	112703	rs6053332	C	G	.	.	VC=SNP
+20	112717	rs7343313	A	G	.	.	VC=SNP
+20	112877	rs8182936	C	T	.	.	VC=SNP
+20	113062	rs6053357	A	G	.	.	VC=SNP
+20	113523	rs6053389	A	G	.	.	VC=SNP
+20	113940	rs35547482	A	C	.	.	VC=SNP
+20	114025	rs6053431	A	G	.	.	VC=SNP
+20	114307	rs12386082	A	T	.	.	VC=SNP
+20	114620	rs62194269	A	G	.	.	VC=SNP
+20	114667	rs62217098	C	T	.	.	VC=SNP
+20	114726	rs61833690	A	G	.	.	VC=SNP
+20	114796	rs11647937	C	T	.	.	VC=SNP
+20	114802	rs61917484	A	G	.	.	VC=SNP
+20	114895	rs61941927	A	G	.	.	VC=SNP
+20	115070	rs62293572	C	T	.	.	VC=SNP
+20	115486	rs1092165	C	T	.	.	VC=SNP
+20	115556	rs1086439	A	G	.	.	VC=SNP
+20	115576	rs1086440	C	T	.	.	VC=SNP
+20	115608	rs62533488	A	C	.	.	VC=SNP
+20	115625	rs62212348	G	T	.	.	VC=SNP
+20	115709	rs62196288	A	G	.	.	VC=SNP
+20	115733	rs1086441	C	T	.	.	VC=SNP
+20	115806	rs1086442	C	T	.	.	VC=SNP
+20	115826	rs62344538	C	T	.	.	VC=SNP
+20	115850	rs1086443	A	G	.	.	VC=SNP
+20	116112	rs1086444	C	T	.	.	VC=SNP
+20	116405	rs6107677	A	G	.	.	VC=SNP
+20	116439	rs1086445	G	T	.	.	VC=SNP
+20	116527	rs6116922	C	T	.	.	VC=SNP
+20	116545	rs6116924	A	G	.	.	VC=SNP
+20	116624	rs8116798	A	T	.	.	VC=SNP
+20	116628	rs1088163	A	T	.	.	VC=SNP
+20	116787	rs6053657	A	G	.	.	VC=SNP
+20	116798	rs6076870	C	T	.	.	VC=SNP
+20	118008	rs59748275	A	G	.	.	VC=SNP
+20	118087	rs57860644	A	G	.	.	VC=SNP
+20	118150	rs58312283	A	G	.	.	VC=SNP
+20	118647	rs6053803	A	G	.	.	VC=SNP
+20	119573	rs6085356	A	G	.	.	VC=SNP
+20	119730	rs6053859	A	G	.	.	VC=SNP
+20	119826	rs6053862	A	T	.	.	VC=SNP
+20	119828	rs28795739	A	T	.	.	VC=SNP
+20	120093	rs6038351	C	T	.	.	VC=SNP
+20	120180	rs6076939	C	T	.	.	VC=SNP
+20	120199	rs6076940	C	T	.	.	VC=SNP
+20	120471	rs6117088	A	G	.	.	VC=SNP
+20	121183	rs13036880	A	G	.	.	VC=SNP
+20	121310	rs6053983	A	C	.	.	VC=SNP
+20	121478	rs6117152	A	C	.	.	VC=SNP
+20	121529	rs1300154	A	G	.	.	VC=SNP
+20	121609	rs61132478	C	G	.	.	VC=SNP
+20	121712	rs6139950	C	T	.	.	VC=SNP
+20	121824	rs6038402	C	T	.	.	VC=SNP
+20	121893	rs7348747	C	T	.	.	VC=SNP
+20	121976	rs6038405	A	G	.	.	VC=SNP
+20	122174	rs6117192	A	G	.	.	VC=SNP
+20	122508	rs6117214	A	G	.	.	VC=SNP
+20	123164	rs45556640	G	T	.	.	VC=SNP
+20	123455	rs6085546	C	T	.	.	VC=SNP
+20	124211	rs6038524	A	G	.	.	VC=SNP
+20	124302	rs6038528	A	C	.	.	VC=SNP
+20	124412	rs6054328	C	T	.	.	VC=SNP
+20	124998	rs6117341	C	T	.	.	VC=SNP
+20	125121	rs1342137	C	T	.	.	VC=SNP
+20	125385	rs6117360	C	T	.	.	VC=SNP
+20	125535	rs6117363	C	T	.	.	VC=SNP
+20	125538	rs6117364	C	G	.	.	VC=SNP
+20	125708	rs6117369	A	G	.	.	VC=SNP
+20	125723	rs6117370	A	G	.	.	VC=SNP
+20	125734	rs6117371	A	G	.	.	VC=SNP
+20	126087	rs34651560	A	G	.	.	VC=SNP
+20	126214	rs34119369	C	T	.	.	VC=SNP
+20	126529	rs6133348	A	G	.	.	VC=SNP
+20	126600	rs6117403	A	C	.	.	VC=SNP
+20	126607	rs61585942	C	T	.	.	VC=SNP
+20	126614	rs6117404	C	T	.	.	VC=SNP
+20	126678	rs11907333	C	T	.	.	VC=SNP
+20	126730	rs6117416	C	T	.	.	VC=SNP
+20	126760	rs6117417	C	T	.	.	VC=SNP
+20	126863	rs6077061	C	T	.	.	VC=SNP
+20	126923	rs4815938	A	C	.	.	VC=SNP
+20	126930	rs6085677	A	T	.	.	VC=SNP
+20	127194	rs11699458	C	T	.	.	VC=SNP
+20	127206	rs6107872	C	T	.	.	VC=SNP
+20	127257	rs6107873	C	T	.	.	VC=SNP
+20	127309	rs6117447	C	T	.	.	VC=SNP
+20	127497	rs6107878	C	T	.	.	VC=SNP
+20	127720	rs753217	A	C	.	.	VC=SNP
+20	127952	rs16994392	C	T	.	.	VC=SNP
+20	128298	rs745840	C	T	.	.	VC=SNP
+20	128414	rs7269703	C	T	.	.	VC=SNP
+20	128713	rs735669	C	G	.	.	VC=SNP
+20	128851	rs6038670	C	T	.	.	VC=SNP
+20	129013	rs6054644	A	C	.	.	VC=SNP
+20	129063	rs16994490	A	G	.	.	VC=SNP
+20	129102	rs6107903	C	T	.	.	VC=SNP
+20	129160	rs8182783	G	T	.	.	VC=SNP
+20	129371	rs6140156	A	G	.	.	VC=SNP
+20	129613	rs4815966	A	G	.	.	VC=SNP
+20	129635	rs12480202	A	C	.	.	VC=SNP
+20	129736	rs6054704	A	G	.	.	VC=SNP
+20	129805	rs6038698	A	G	.	.	VC=SNP
+20	129864	rs6054706	C	T	.	.	VC=SNP
+20	130133	rs62190499	C	T	.	.	VC=SNP
+20	130192	rs58004107	C	T	.	.	VC=SNP
+20	130854	rs6085905	C	T	.	.	VC=SNP
+20	131133	rs6085919	A	G	.	.	VC=SNP
+20	131270	rs6140206	A	G	.	.	VC=SNP
+20	131362	rs6054812	C	T	.	.	VC=SNP
+20	131447	rs58099682	C	T	.	.	VC=SNP
+20	131495	rs1592156	C	T	.	.	VC=SNP
+20	131657	rs1592157	A	G	.	.	VC=SNP
+20	132746	rs6117764	A	G	.	.	VC=SNP
+20	132775	rs13036802	C	T	.	.	VC=SNP
+20	132793	rs6038789	C	T	.	.	VC=SNP
+20	133158	rs6054966	A	T	.	.	VC=SNP
+20	133433	rs2316225	A	C	.	.	VC=SNP
+20	133900	rs12625439	C	G	.	.	VC=SNP
+20	134017	rs6055045	A	G	.	.	VC=SNP
+20	134196	rs13044370	C	T	.	.	VC=SNP
+20	134281	rs7353692	C	T	.	.	VC=SNP
+20	134284	rs6055069	C	T	.	.	VC=SNP
+20	134366	rs6055074	A	G	.	.	VC=SNP
+20	134400	rs7353361	A	G	.	.	VC=SNP
+20	134421	rs6055080	C	T	.	.	VC=SNP
+20	134476	rs6055084	C	T	.	.	VC=SNP
+20	134539	rs6086092	A	T	.	.	VC=SNP
+20	134613	rs6117841	A	G	.	.	VC=SNP
+20	134643	rs6038867	C	T	.	.	VC=SNP
+20	134715	rs6117846	A	G	.	.	VC=SNP
+20	134844	rs1342845	C	T	.	.	VC=SNP
+20	134931	rs2316226	G	T	.	.	VC=SNP
+20	135488	rs1342846	C	T	.	.	VC=SNP
+20	135672	rs6086145	A	G	.	.	VC=SNP
+20	135897	rs11908222	A	C	.	.	VC=SNP
+20	136025	rs6086162	C	T	.	.	VC=SNP
+20	136374	rs6086171	A	G	.	.	VC=SNP
+20	136454	rs6077246	C	T	.	.	VC=SNP
+20	136461	rs35721811	A	G	.	.	VC=SNP
+20	136568	rs6108048	A	C	.	.	VC=SNP
+20	136721	rs12185780	C	T	.	.	VC=SNP
+20	137010	rs6117946	C	T	.	.	VC=SNP
+20	137114	rs13043289	A	G	.	.	VC=SNP
+20	137127	rs1935387	A	G	.	.	VC=SNP
+20	137293	rs6108051	C	T	.	.	VC=SNP
+20	137310	rs6086226	A	C	.	.	VC=SNP
+20	137374	rs11905393	C	T	.	.	VC=SNP
+20	137454	rs12480529	G	T	.	.	VC=SNP
+20	137520	rs12481054	A	G	.	.	VC=SNP
+20	137674	rs2117453	A	G	.	.	VC=SNP
+20	137900	rs1434789	G	T	.	.	VC=SNP
+20	137933	rs1434790	C	G	.	.	VC=SNP
+20	138004	rs6055356	C	G	.	.	VC=SNP
+20	138125	rs2298108	G	T	.	.	VC=SNP
+20	138148	rs2298109	C	T	.	.	VC=SNP
+20	138460	rs6077288	A	G	.	.	VC=SNP
+20	138555	rs1858594	C	T	.	.	VC=SNP
+20	138601	rs6086288	C	T	.	.	VC=SNP
+20	138603	rs3859673	C	T	.	.	VC=SNP
+20	138606	rs1858592	A	G	.	.	VC=SNP
+20	138615	rs6086289	A	G	.	.	VC=SNP
+20	138620	rs6077293	A	C	.	.	VC=SNP
+20	138699	rs6055410	A	G	.	.	VC=SNP
+20	139154	rs12626088	A	G	.	.	VC=SNP
+20	139173	rs11087789	C	T	.	.	VC=SNP
+20	139362	rs6055460	A	G	.	.	VC=SNP
+20	139409	rs12624951	A	G	.	.	VC=SNP
+20	139419	rs16995668	C	T	.	.	VC=SNP
+20	139456	rs12624954	A	G	.	.	VC=SNP
+20	139574	rs6118041	C	T	.	.	VC=SNP
+20	139576	rs16995685	A	C	.	.	VC=SNP
+20	139745	rs4142304	C	T	.	.	VC=SNP
+20	139841	rs4142303	A	T	.	.	VC=SNP
+20	140086	rs6039029	A	G	.	.	VC=SNP
+20	140087	rs7351533	G	T	.	.	VC=SNP
+20	140105	rs6055524	A	G	.	.	VC=SNP
+20	140171	rs12480299	A	G	.	.	VC=SNP
+20	140280	rs6039035	C	T	.	.	VC=SNP
+20	140387	rs6055554	A	G	.	.	VC=SNP
+20	140505	rs11087790	C	T	.	.	VC=SNP
+20	140506	rs11087791	A	G	.	.	VC=SNP
+20	140695	rs6086352	A	G	.	.	VC=SNP
+20	140786	rs6055580	C	T	.	.	VC=SNP
+20	140853	rs6086355	C	G	.	.	VC=SNP
+20	140923	rs6086356	C	G	.	.	VC=SNP
+20	141025	rs6086359	G	T	.	.	VC=SNP
+20	141029	rs6086360	C	T	.	.	VC=SNP
+20	141087	rs6039083	C	T	.	.	VC=SNP
+20	141324	rs28859937	C	T	.	.	VC=SNP
+20	141530	rs809340	A	G	.	.	VC=SNP
+20	141597	rs9712407	A	T	.	.	VC=SNP
+20	141608	rs812605	G	T	.	.	VC=SNP
+20	141621	rs806268	A	G	.	.	VC=SNP
+20	141656	rs790683	G	T	.	.	VC=SNP
+20	141690	rs790684	C	T	.	.	VC=SNP
+20	141741	rs10154030	C	T	.	.	VC=SNP
+20	141769	rs9712517	C	G	.	.	VC=SNP
+20	141822	rs9712410	C	T	.	.	VC=SNP
+20	141862	rs9712411	C	T	.	.	VC=SNP
+20	142021	rs6118147	A	G	.	.	VC=SNP
+20	142229	rs6086398	C	T	.	.	VC=SNP
+20	142279	rs6086399	A	C	.	.	VC=SNP
+20	142552	rs62190500	A	G	.	.	VC=SNP
+20	142559	rs62190501	C	G	.	.	VC=SNP
+20	142559	rs6055749	C	G	.	.	VC=SNP
+20	142792	rs6086420	C	T	.	.	VC=SNP
+20	143074	rs4550380	C	T	.	.	VC=SNP
+20	143373	rs6086442	C	T	.	.	VC=SNP
+20	143447	rs6118192	A	G	.	.	VC=SNP
+20	143495	rs6077359	G	T	.	.	VC=SNP
+20	143573	rs13041932	G	T	.	.	VC=SNP
+20	143637	rs6086452	C	T	.	.	VC=SNP
+20	143668	rs57246750	A	G	.	.	VC=SNP
+20	143723	rs1594917	A	G	.	.	VC=SNP
+20	143754	rs1594918	C	T	.	.	VC=SNP
+20	143755	rs56910882	A	G	.	.	VC=SNP
+20	143918	rs1836440	C	T	.	.	VC=SNP
+20	144382	rs6055874	C	T	.	.	VC=SNP
+20	144535	rs6055884	A	C	.	.	VC=SNP
+20	144551	rs7264822	G	T	.	.	VC=SNP
+20	144560	rs6077375	G	T	.	.	VC=SNP
+20	144567	rs7270884	A	T	.	.	VC=SNP
+20	144570	rs6055888	A	G	.	.	VC=SNP
+20	144830	rs16996447	C	G	.	.	VC=SNP
+20	144899	rs6039198	C	T	.	.	VC=SNP
+20	144975	rs6086510	C	T	.	.	VC=SNP
+20	145210	rs6055936	A	G	.	.	VC=SNP
+20	145358	rs6133594	A	C	.	.	VC=SNP
+20	145413	rs6086539	A	G	.	.	VC=SNP
+20	145662	rs60102939	C	T	.	.	VC=SNP
+20	145745	rs58107076	C	T	.	.	VC=SNP
+20	145749	rs6039221	C	T	.	.	VC=SNP
+20	145757	rs11908108	C	T	.	.	VC=SNP
+20	145853	rs6086552	A	C	.	.	VC=SNP
+20	146305	rs6086560	A	G	.	.	VC=SNP
+20	146738	rs13043240	A	C	.	.	VC=SNP
+20	146951	rs1865432	C	T	.	.	VC=SNP
+20	146995	rs6086589	A	T	.	.	VC=SNP
+20	147497	rs1858596	C	T	.	.	VC=SNP
+20	147642	rs6056203	C	T	.	.	VC=SNP
+20	147685	rs1858597	G	T	.	.	VC=SNP
+20	147915	rs1858598	A	G	.	.	VC=SNP
+20	147917	rs1858599	G	T	.	.	VC=SNP
+20	148084	rs4816104	C	T	.	.	VC=SNP
+20	148301	rs60417500	C	T	.	.	VC=SNP
+20	148480	rs4816108	C	T	.	.	VC=SNP
+20	148529	rs60820430	C	G	.	.	VC=SNP
+20	148703	rs964794	C	T	.	.	VC=SNP
+20	149027	rs57531026	C	T	.	.	VC=SNP
+20	149048	rs57957087	A	G	.	.	VC=SNP
+20	149407	rs6056336	C	G	.	.	VC=SNP
+20	149975	rs6077481	C	T	.	.	VC=SNP
+20	150262	rs62190502	G	T	.	.	VC=SNP
+20	151330	rs751596	C	T	.	.	VC=SNP
+20	151424	rs34138976	G	T	.	.	VC=SNP
+20	151528	rs28545640	A	C	.	.	VC=SNP
+20	151590	rs62190503	C	T	.	.	VC=SNP
+20	151724	rs6140904	C	T	.	.	VC=SNP
+20	151728	rs59071363	A	G	.	.	VC=SNP
+20	151811	rs6133688	C	T	.	.	VC=SNP
+20	151960	rs6133689	C	T	.	.	VC=SNP
+20	152533	rs6056556	A	G	.	.	VC=SNP
+20	152570	rs6056559	A	G	.	.	VC=SNP
+20	152686	rs28772596	A	G	.	.	VC=SNP
+20	152972	rs6056585	C	T	.	.	VC=SNP
+20	152992	rs6039451	C	G	.	.	VC=SNP
+20	153057	rs35563463	C	T	.	.	VC=SNP
+20	153154	rs6039455	A	G	.	.	VC=SNP
+20	153267	rs6056599	C	T	.	.	VC=SNP
+20	153393	rs6039463	A	C	.	.	VC=SNP
+20	153403	rs62190510	A	G	.	.	VC=SNP
+20	153405	rs62190511	A	G	.	.	VC=SNP
+20	153430	rs34932842	A	G	.	.	VC=SNP
+20	153677	rs57385404	C	T	.	.	VC=SNP
+20	153691	rs4098711	C	T	.	.	VC=SNP
+20	153856	rs13043089	C	T	.	.	VC=SNP
+20	153954	rs6039477	C	T	.	.	VC=SNP
+20	153997	rs60800772	A	C	.	.	VC=SNP
+20	154315	rs6039480	A	G	.	.	VC=SNP
+20	154330	rs13038110	C	T	.	.	VC=SNP
+20	154403	rs6118631	A	C	.	.	VC=SNP
+20	154614	rs6039496	G	T	.	.	VC=SNP
+20	154710	rs60100130	A	G	.	.	VC=SNP
+20	154837	rs6056705	C	T	.	.	VC=SNP
+20	154846	rs57535042	A	G	.	.	VC=SNP
+20	155025	rs59464508	A	C	.	.	VC=SNP
+20	155449	rs58570636	C	T	.	.	VC=SNP
+20	155732	rs56819867	C	T	.	.	VC=SNP
+20	155910	rs6140993	C	T	.	.	VC=SNP
+20	155955	rs6140994	A	G	.	.	VC=SNP
+20	156051	rs56379011	A	G	.	.	VC=SNP
+20	156103	rs56132743	A	G	.	.	VC=SNP
+20	156165	rs62190512	C	G	.	.	VC=SNP
+20	156173	rs6141010	C	T	.	.	VC=SNP
+20	156329	rs6141014	C	G	.	.	VC=SNP
+20	156330	rs6141015	G	T	.	.	VC=SNP
+20	156534	rs6141019	C	T	.	.	VC=SNP
+20	156538	rs6141020	C	T	.	.	VC=SNP
+20	156652	rs6141023	C	T	.	.	VC=SNP
+20	156656	rs6141024	A	C	.	.	VC=SNP
+20	157157	rs4813900	C	T	.	.	VC=SNP
+20	157272	rs6141042	C	T	.	.	VC=SNP
+20	157746	rs6141061	A	C	.	.	VC=SNP
+20	157976	rs2873104	A	G	.	.	VC=SNP
+20	158114	rs28897484	A	G	.	.	VC=SNP
+20	158315	rs6141082	C	G	.	.	VC=SNP
+20	158434	rs6141085	C	T	.	.	VC=SNP
+20	158495	rs6118812	A	G	.	.	VC=SNP
+20	158684	rs13041111	C	T	.	.	VC=SNP
+20	158690	rs13037185	A	G	.	.	VC=SNP
+20	158744	rs6118820	A	G	.	.	VC=SNP
+20	158778	rs34563679	C	T	.	.	VC=SNP
+20	158804	rs35999098	A	C	.	.	VC=SNP
+20	159097	rs13038393	C	T	.	.	VC=SNP
+20	159245	rs13038689	C	T	.	.	VC=SNP
+20	159289	rs6133774	C	T	.	.	VC=SNP
+20	159441	rs57795733	A	C	.	.	VC=SNP
+20	159637	rs6087115	A	G	.	.	VC=SNP
+20	159745	rs13039069	A	C	.	.	VC=SNP
+20	160208	rs6039698	A	G	.	.	VC=SNP
+20	160216	rs34294689	C	T	.	.	VC=SNP
+20	160383	rs6077658	A	G	.	.	VC=SNP
+20	160533	rs4813916	A	G	.	.	VC=SNP
+20	160551	rs4813917	C	T	.	.	VC=SNP
+20	161450	rs1080148	C	T	.	.	VC=SNP
+20	161502	rs6039778	C	T	.	.	VC=SNP
+20	161736	rs6032830	C	T	.	.	VC=SNP
+20	162102	rs6039810	C	T	.	.	VC=SNP
+20	162217	rs6039819	C	T	.	.	VC=SNP
+20	162292	rs7344915	A	G	.	.	VC=SNP
+20	162683	rs4142305	C	T	.	.	VC=SNP
+20	162951	rs6077754	C	T	.	.	VC=SNP
+20	164083	rs6032887	C	T	.	.	VC=SNP
+20	164284	rs1832858	C	G	.	.	VC=SNP
+20	164340	rs3885194	A	T	.	.	VC=SNP
+20	164436	rs6040007	C	T	.	.	VC=SNP
+20	164449	rs6133959	C	G	.	.	VC=SNP
+20	164741	rs35246820	A	G	.	.	VC=SNP
+20	165124	rs57280980	C	T	.	.	VC=SNP
+20	165704	rs59676275	A	C	.	.	VC=SNP
+20	165777	rs6077866	C	T	.	.	VC=SNP
+20	165802	rs11906921	C	G	.	.	VC=SNP
+20	165832	rs13042281	G	T	.	.	VC=SNP
+20	165908	rs6074167	C	T	.	.	VC=SNP
+20	166163	rs11908642	C	T	.	.	VC=SNP
+20	166188	rs11905863	A	G	.	.	VC=SNP
+20	166190	rs6104648	C	T	.	.	VC=SNP
+20	166310	rs35750477	A	G	.	.	VC=SNP
+20	166727	rs6077904	A	G	.	.	VC=SNP
+20	166824	rs6040142	A	G	.	.	VC=SNP
+20	166895	rs8125141	A	C	.	.	VC=SNP
+20	167218	rs35361009	A	G	.	.	VC=SNP
+20	167301	rs57031052	A	T	.	.	VC=SNP
+20	167310	rs1857091	C	T	.	.	VC=SNP
+20	167325	rs58654346	G	T	.	.	VC=SNP
+20	167431	rs1578637	A	G	.	.	VC=SNP
+20	167441	rs55814359	A	G	.	.	VC=SNP
+20	167455	rs59938831	A	G	.	.	VC=SNP
+20	167647	rs55750714	A	T	.	.	VC=SNP
+20	167702	rs60070318	C	G	.	.	VC=SNP
+20	167774	rs55681343	A	G	.	.	VC=SNP
+20	167833	rs13042261	C	T	.	.	VC=SNP
+20	167848	rs57064502	G	T	.	.	VC=SNP
+20	167900	rs13039629	C	G	.	.	VC=SNP
+20	168020	rs13036722	C	T	.	.	VC=SNP
+20	168080	rs1342136	A	G	.	.	VC=SNP
+20	168139	rs13038207	A	G	.	.	VC=SNP
+20	168173	rs62190513	C	T	.	.	VC=SNP
+20	168241	rs13038380	A	G	.	.	VC=SNP
+20	168407	rs4813041	A	G	.	.	VC=SNP
+20	168466	rs4813042	A	T	.	.	VC=SNP
+20	168728	rs4813043	A	T	.	.	VC=SNP
+20	168781	rs35089290	G	T	.	.	VC=SNP
+20	169701	rs722829	C	T	.	.	VC=SNP
+20	169945	rs6078041	A	G	.	.	VC=SNP
+20	169995	rs6040343	C	T	.	.	VC=SNP
+20	170011	rs6078051	A	G	.	.	VC=SNP
+20	170091	rs6078053	A	G	.	.	VC=SNP
+20	170589	rs1469782	A	G	.	.	VC=SNP
+20	170642	rs1469781	C	T	.	.	VC=SNP
+20	170805	rs16993051	A	G	.	.	VC=SNP
+20	170814	rs6033040	C	T	.	.	VC=SNP
+20	170820	rs17760013	A	G	.	.	VC=SNP
+20	170940	rs6033043	A	T	.	.	VC=SNP
+20	171189	rs6078096	C	T	.	.	VC=SNP
+20	171591	rs6040455	A	G	.	.	VC=SNP
+20	171627	rs6033065	A	G	.	.	VC=SNP
+20	171822	rs11907296	C	T	.	.	VC=SNP
+20	171839	rs11905813	A	G	.	.	VC=SNP
+20	171846	rs62190514	C	T	.	.	VC=SNP
+20	172480	rs34030088	C	T	.	.	VC=SNP
+20	172518	rs2099433	C	T	.	.	VC=SNP
+20	172741	rs6040567	G	T	.	.	VC=SNP
+20	172799	rs6104741	C	G	.	.	VC=SNP
+20	172876	rs6104742	C	T	.	.	VC=SNP
+20	173117	rs6108951	A	G	.	.	VC=SNP
+20	173159	rs6108952	A	G	.	.	VC=SNP
+20	173384	rs13433233	A	G	.	.	VC=SNP
+20	173747	rs59785731	C	G	.	.	VC=SNP
+20	173751	rs6040696	A	G	.	.	VC=SNP
+20	173770	rs6078196	A	G	.	.	VC=SNP
+20	173928	rs8125701	A	C	.	.	VC=SNP
+20	174069	rs2316227	A	G	.	.	VC=SNP
+20	174254	rs6109009	A	T	.	.	VC=SNP
+20	174257	rs2196238	C	T	.	.	VC=SNP
+20	174284	rs2196237	A	G	.	.	VC=SNP
+20	174608	rs6104766	C	G	.	.	VC=SNP
+20	174636	rs6109024	C	T	.	.	VC=SNP
+20	174712	rs6109030	C	T	.	.	VC=SNP
+20	175264	rs56303800	C	T	.	.	VC=SNP
+20	175387	rs6033189	A	G	.	.	VC=SNP
+20	175468	rs6033192	C	T	.	.	VC=SNP
+20	175473	rs6040802	C	T	.	.	VC=SNP
+20	175491	rs6040803	C	T	.	.	VC=SNP
+20	175497	rs6040804	C	T	.	.	VC=SNP
+20	176419	rs6078296	C	G	.	.	VC=SNP
+20	176556	rs6109123	C	T	.	.	VC=SNP
+20	176593	rs6104786	C	T	.	.	VC=SNP
+20	176618	rs6033213	C	T	.	.	VC=SNP
+20	176747	rs6078320	A	T	.	.	VC=SNP
+20	177225	rs6078349	A	G	.	.	VC=SNP
+20	177250	rs6074354	C	T	.	.	VC=SNP
+20	177679	rs6040928	C	T	.	.	VC=SNP
+20	177764	rs6040932	C	T	.	.	VC=SNP
+20	177841	rs6040936	C	T	.	.	VC=SNP
+20	177914	rs6040945	C	T	.	.	VC=SNP
+20	177971	rs6109165	A	G	.	.	VC=SNP
+20	178021	rs1757538	A	G	.	.	VC=SNP
+20	178105	rs2947292	C	T	.	.	VC=SNP
+20	178181	rs9753754	G	T	.	.	VC=SNP
+20	178299	rs9753694	C	T	.	.	VC=SNP
+20	178428	rs9753756	G	T	.	.	VC=SNP
+20	178812	rs7272886	A	G	.	.	VC=SNP
+20	178815	rs6041001	A	G	.	.	VC=SNP
+20	178856	rs7269972	C	T	.	.	VC=SNP
+20	179455	rs34499901	A	T	.	.	VC=SNP
+20	179562	rs6033277	A	G	.	.	VC=SNP
+20	179734	rs7363157	C	T	.	.	VC=SNP
+20	179764	rs1946670	C	T	.	.	VC=SNP
+20	180188	rs6078454	C	T	.	.	VC=SNP
+20	181455	rs6041201	A	G	.	.	VC=SNP
+20	181560	rs6041216	C	T	.	.	VC=SNP
+20	181563	rs6514250	A	C	.	.	VC=SNP
+20	181638	rs6033356	C	T	.	.	VC=SNP
+20	181720	rs34102957	C	G	.	.	VC=SNP
+20	181918	rs6041233	A	G	.	.	VC=SNP
+20	181967	rs6041237	A	C	.	.	VC=SNP
+20	182013	rs6078500	C	T	.	.	VC=SNP
+20	182059	rs6041253	C	T	.	.	VC=SNP
+20	182356	rs6078516	A	G	.	.	VC=SNP
+20	182886	rs6078545	A	G	.	.	VC=SNP
+20	183200	rs7347615	A	G	.	.	VC=SNP
+20	183222	rs6033398	C	T	.	.	VC=SNP
+20	183237	rs57505814	G	T	.	.	VC=SNP
+20	183271	rs7269051	C	T	.	.	VC=SNP
+20	183330	rs62190515	G	T	.	.	VC=SNP
+20	183808	rs6104905	C	T	.	.	VC=SNP
+20	184175	rs6078629	A	G	.	.	VC=SNP
+20	184221	rs6041402	A	G	.	.	VC=SNP
+20	184243	rs13038969	A	G	.	.	VC=SNP
+20	184269	rs28566697	A	C	.	.	VC=SNP
+20	184290	rs6078641	A	G	.	.	VC=SNP
+20	184420	rs6104919	A	G	.	.	VC=SNP
+20	184488	rs6078660	A	T	.	.	VC=SNP
+20	184572	rs57294950	G	T	.	.	VC=SNP
+20	184731	rs6041446	C	T	.	.	VC=SNP
+20	184897	rs56812392	G	T	.	.	VC=SNP
+20	184956	rs6109479	C	G	.	.	VC=SNP
+20	185844	rs8125008	C	G	.	.	VC=SNP
+20	185926	rs6033484	A	G	.	.	VC=SNP
+20	186405	rs6078732	A	G	.	.	VC=SNP
+20	187087	rs36084977	C	T	.	.	VC=SNP
+20	187437	rs56828420	A	G	.	.	VC=SNP
+20	187648	rs6078790	A	G	.	.	VC=SNP
+20	188030	rs6041696	C	T	.	.	VC=SNP
+20	188107	rs6109597	C	T	.	.	VC=SNP
+20	188318	rs6109606	C	T	.	.	VC=SNP
+20	188438	rs6109612	C	T	.	.	VC=SNP
+20	189180	rs6074540	C	G	.	.	VC=SNP
+20	189520	rs7509116	C	T	.	.	VC=SNP
+20	189958	rs16994393	A	G	.	.	VC=SNP
+20	190424	rs62190516	A	G	.	.	VC=SNP
+20	191078	rs8120789	A	G	.	.	VC=SNP
+20	191101	rs36124145	C	T	.	.	VC=SNP
+20	191765	rs7269171	A	G	.	.	VC=SNP
+20	191797	rs6074578	G	T	.	.	VC=SNP
+20	191809	rs6074579	C	T	.	.	VC=SNP
+20	192069	rs6074583	C	T	.	.	VC=SNP
+20	192350	rs6078987	A	G	.	.	VC=SNP
+20	192528	rs6079000	A	G	.	.	VC=SNP
+20	192580	rs6079002	A	G	.	.	VC=SNP
+20	192631	rs6079003	A	G	.	.	VC=SNP
+20	193321	rs8124562	A	G	.	.	VC=SNP
+20	193743	rs4441542	A	G	.	.	VC=SNP
+20	193761	rs4632421	C	T	.	.	VC=SNP
+20	193767	rs4318451	A	G	.	.	VC=SNP
+20	193864	rs6042134	C	G	.	.	VC=SNP
+20	193885	rs6033719	A	G	.	.	VC=SNP
+20	194282	rs6079088	C	T	.	.	VC=SNP
+20	194290	rs13039264	A	G	.	.	VC=SNP
+20	194357	rs6042190	A	C	.	.	VC=SNP
+20	194527	rs13044558	C	T	.	.	VC=SNP
+20	195085	rs6109964	A	T	.	.	VC=SNP
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+20	195171	rs6109969	A	C	.	.	VC=SNP
+20	195465	rs6109980	C	T	.	.	VC=SNP
+20	195520	rs8115601	A	G	.	.	VC=SNP
+20	195558	rs6131496	C	T	.	.	VC=SNP
+20	195642	rs61475703	A	G	.	.	VC=SNP
+20	195663	rs60524137	C	T	.	.	VC=SNP
+20	195672	rs12479794	A	G	.	.	VC=SNP
+20	195696	rs8115666	A	G	.	.	VC=SNP
+20	195849	rs58096711	C	T	.	.	VC=SNP
+20	195884	rs6110002	A	G	.	.	VC=SNP
+20	196604	rs4813140	C	G	.	.	VC=SNP
+20	196662	rs60591383	G	T	.	.	VC=SNP
+20	197162	rs6110044	A	G	.	.	VC=SNP
+20	197675	rs6110061	A	G	.	.	VC=SNP
+20	197804	rs11908008	C	T	.	.	VC=SNP
+20	198310	rs6033854	C	T	.	.	VC=SNP
+20	198981	rs8117584	G	T	.	.	VC=SNP
+20	199986	rs59347298	A	G	.	.	VC=SNP
+20	199991	rs6042513	A	G	.	.	VC=SNP
+20	200023	rs6042517	A	G	.	.	VC=SNP
+20	200069	rs6042518	A	G	.	.	VC=SNP
+20	200142	rs1434791	A	T	.	.	VC=SNP
+20	200654	rs58495374	G	T	.	.	VC=SNP
+20	200658	rs60825464	C	T	.	.	VC=SNP
+20	201053	rs60085674	A	G	.	.	VC=SNP
+20	201355	rs6042589	C	T	.	.	VC=SNP
+20	201486	rs6042597	C	T	.	.	VC=SNP
+20	201502	rs11908521	G	T	.	.	VC=SNP
+20	201681	rs6079373	A	G	.	.	VC=SNP
+20	202505	rs6135123	A	G	.	.	VC=SNP
+20	202564	rs35139959	A	C	.	.	VC=SNP
+20	202703	rs6110257	A	C	.	.	VC=SNP
+20	203004	rs6105259	C	T	.	.	VC=SNP
+20	203094	rs6105263	C	T	.	.	VC=SNP
+20	203398	rs6074732	C	T	.	.	VC=SNP
+20	203681	rs11697227	C	T	.	.	VC=SNP
+20	204242	rs6105280	A	G	.	.	VC=SNP
+20	204608	rs58305202	A	G	.	.	VC=SNP
+20	204830	rs6105294	A	G	.	.	VC=SNP
+20	206402	rs2164169	A	G	.	.	VC=SNP
+20	206596	rs6042891	C	T	.	.	VC=SNP
+20	206927	rs13433294	C	T	.	.	VC=SNP
+20	206928	rs13433375	A	G	.	.	VC=SNP
+20	207416	rs4813167	A	T	.	.	VC=SNP
+20	207889	rs2298149	C	T	.	.	VC=SNP
+20	207903	rs2298148	A	G	.	.	VC=SNP
+20	208168	rs6110460	C	T	.	.	VC=SNP
+20	208345	rs13038670	A	T	.	.	VC=SNP
+20	208495	rs55735991	A	G	.	.	VC=SNP
+20	208550	rs6105339	G	T	.	.	VC=SNP
+20	208557	rs59535708	C	T	.	.	VC=SNP
+20	208580	rs8116751	A	G	.	.	VC=SNP
+20	208684	rs58210889	C	T	.	.	VC=SNP
+20	208685	rs6110474	A	G	.	.	VC=SNP
+20	209404	rs7274629	A	G	.	.	VC=SNP
+20	209851	rs6074833	C	T	.	.	VC=SNP
+20	210061	rs13045643	A	G	.	.	VC=SNP
+20	210306	rs1053783	C	G	.	.	VC=SNP
+20	210469	rs41275426	A	G	.	.	VC=SNP
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+20	210875	rs4814347	A	G	.	.	VC=SNP
+20	211061	rs6135358	A	G	.	.	VC=SNP
+20	211431	rs6074858	C	T	.	.	VC=SNP
+20	211509	rs6110556	C	T	.	.	VC=SNP
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+20	211959	rs12480188	C	G	.	.	VC=SNP
+20	212137	rs57469724	A	G	.	.	VC=SNP
+20	212351	rs6043202	G	T	.	.	VC=SNP
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+20	212543	rs6105394	C	T	.	.	VC=SNP
+20	212588	rs6110573	A	G	.	.	VC=SNP
+20	212650	rs12624418	A	G	.	.	VC=SNP
+20	213423	rs1342841	G	T	.	.	VC=SNP
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+20	214373	rs6079868	C	T	.	.	VC=SNP
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+20	216098	rs6110739	A	G	.	.	VC=SNP
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+20	216222	rs6110750	A	G	.	.	VC=SNP
+20	216323	rs28678198	A	G	.	.	VC=SNP
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+20	217074	rs4814401	A	G	.	.	VC=SNP
+20	217108	rs6043547	C	T	.	.	VC=SNP
+20	217173	rs13041278	C	G	.	.	VC=SNP
+20	217281	rs4814402	A	G	.	.	VC=SNP
+20	217340	rs13433124	C	T	.	.	VC=SNP
+20	217449	rs34620865	C	T	.	.	VC=SNP
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+20	217851	rs4814408	C	T	.	.	VC=SNP
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+20	218783	rs2077713	C	T	.	.	VC=SNP
+20	219011	rs1418259	C	T	.	.	VC=SNP
+20	219099	rs727829	C	G	.	.	VC=SNP
+20	219275	rs62190544	G	T	.	.	VC=SNP
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+20	219362	rs6080091	A	G	.	.	VC=SNP
+20	219662	rs6110882	C	T	.	.	VC=SNP
+20	219682	rs8114352	A	G	.	.	VC=SNP
+20	219972	rs6075002	A	C	.	.	VC=SNP
+20	220059	rs6043719	C	T	.	.	VC=SNP
+20	220085	rs6075005	A	C	.	.	VC=SNP
+20	220092	rs6075009	A	C	.	.	VC=SNP
+20	220197	rs4334551	C	T	.	.	VC=SNP
+20	220204	rs4535135	G	T	.	.	VC=SNP
+20	220262	rs10153962	A	T	.	.	VC=SNP
+20	220290	rs12481306	C	T	.	.	VC=SNP
+20	220303	rs10485818	A	C	.	.	VC=SNP
+20	220444	rs6080130	A	G	.	.	VC=SNP
+20	220592	rs8124231	A	C	.	.	VC=SNP
+20	220649	rs8114156	A	G	.	.	VC=SNP
+20	220757	rs8124344	C	T	.	.	VC=SNP
+20	220807	rs8115845	G	T	.	.	VC=SNP
+20	220865	rs60672277	A	G	.	.	VC=SNP
+20	221018	rs10485819	G	T	.	.	VC=SNP
+20	221099	rs6110941	A	G	.	.	VC=SNP
+20	221107	rs6034409	C	T	.	.	VC=SNP
+20	221308	rs6110962	C	G	.	.	VC=SNP
+20	221513	rs35904120	C	G	.	.	VC=SNP
+20	221537	rs7268977	A	G	.	.	VC=SNP
+20	221832	rs11907038	A	G	.	.	VC=SNP
+20	221853	rs4814464	G	T	.	.	VC=SNP
+20	221942	rs2050980	C	T	.	.	VC=SNP
+20	222262	rs6105567	A	G	.	.	VC=SNP
+20	222383	rs58524719	A	G	.	.	VC=SNP
+20	222417	rs59011458	C	T	.	.	VC=SNP
+20	222632	rs12624551	C	T	.	.	VC=SNP
+20	222674	rs6043906	A	G	.	.	VC=SNP
+20	222730	rs6043910	A	C	.	.	VC=SNP
+20	222827	rs1125806	A	G	.	.	VC=SNP
+20	222831	rs11697526	A	C	.	.	VC=SNP
+20	222836	rs1978761	C	T	.	.	VC=SNP
+20	222947	rs6111081	A	G	.	.	VC=SNP
+20	222994	rs2033588	A	C	.	.	VC=SNP
+20	223088	rs6111085	A	G	.	.	VC=SNP
+20	223154	rs6080248	C	T	.	.	VC=SNP
+20	223172	rs4814488	C	T	.	.	VC=SNP
+20	223196	rs11698540	C	T	.	.	VC=SNP
+20	223242	rs6075053	C	T	.	.	VC=SNP
+20	223255	rs4239717	G	T	.	.	VC=SNP
+20	223439	rs4814494	A	G	.	.	VC=SNP
+20	223532	rs6111117	A	G	.	.	VC=SNP
+20	223538	rs4814496	C	T	.	.	VC=SNP
+20	223707	rs7267189	A	G	.	.	VC=SNP
+20	223858	rs6075062	A	G	.	.	VC=SNP
+20	224128	rs16999397	C	T	.	.	VC=SNP
+20	224173	rs4814505	C	T	.	.	VC=SNP
+20	224601	rs36080315	G	T	.	.	VC=SNP
+20	224941	rs6075074	A	T	.	.	VC=SNP
+20	224971	rs6080305	A	G	.	.	VC=SNP
+20	225058	rs10222024	A	G	.	.	VC=SNP
+20	225115	rs6044154	C	T	.	.	VC=SNP
+20	225412	rs11908080	C	T	.	.	VC=SNP
+20	225444	rs6075086	C	T	.	.	VC=SNP
+20	225605	rs10221990	A	G	.	.	VC=SNP
+20	225622	rs10222031	C	T	.	.	VC=SNP
+20	225768	rs6080351	A	G	.	.	VC=SNP
+20	225843	rs6044204	C	T	.	.	VC=SNP
+20	226066	rs34317151	A	G	.	.	VC=SNP
+20	226080	rs35248893	A	G	.	.	VC=SNP
+20	226090	rs34297660	A	G	.	.	VC=SNP
+20	226111	rs56141782	G	T	.	.	VC=SNP
+20	226113	rs6044238	G	T	.	.	VC=SNP
+20	226115	rs62190547	G	T	.	.	VC=SNP
+20	226153	rs6111254	A	G	.	.	VC=SNP
+20	226430	rs11908659	C	T	.	.	VC=SNP
+20	226444	rs438960	A	G	.	.	VC=SNP
+20	226518	rs431766	A	G	.	.	VC=SNP
+20	226569	rs13037312	A	G	.	.	VC=SNP
+20	226768	rs6135882	A	G	.	.	VC=SNP
+20	226789	rs397007	A	T	.	.	VC=SNP
+20	226842	rs6135885	A	G	.	.	VC=SNP
+20	227142	rs377021	G	T	.	.	VC=SNP
+20	227246	rs395435	A	G	.	.	VC=SNP
+20	227264	rs6044362	A	G	.	.	VC=SNP
+20	227516	rs6044405	A	G	.	.	VC=SNP
+20	227967	rs371791	A	G	.	.	VC=SNP
+20	228153	rs35145428	A	G	.	.	VC=SNP
+20	228165	rs34965033	A	G	.	.	VC=SNP
+20	228198	rs60368722	A	C	.	.	VC=SNP
+20	228202	rs61677735	A	C	.	.	VC=SNP
+20	228206	rs405054	A	C	.	.	VC=SNP
+20	228355	rs12479791	A	T	.	.	VC=SNP
+20	228577	rs1775904	A	G	.	.	VC=SNP
+20	228706	rs13038867	A	G	.	.	VC=SNP
+20	228740	rs13037598	A	T	.	.	VC=SNP
+20	228814	rs35581396	A	G	.	.	VC=SNP
+20	228889	rs35566747	A	C	.	.	VC=SNP
+20	228998	rs12625397	A	G	.	.	VC=SNP
+20	229012	rs12625070	C	T	.	.	VC=SNP
+20	229018	rs6111372	C	T	.	.	VC=SNP
+20	229160	rs6044559	A	G	.	.	VC=SNP
+20	229456	rs580629	A	G	.	.	VC=SNP
+20	229479	rs13039798	C	T	.	.	VC=SNP
+20	229495	rs485058	C	T	.	.	VC=SNP
+20	229722	rs6044591	C	T	.	.	VC=SNP
+20	229888	rs59247954	A	G	.	.	VC=SNP
+20	229894	rs6111399	A	T	.	.	VC=SNP
+20	229973	rs6111402	C	T	.	.	VC=SNP
+20	229978	rs448030	C	G	.	.	VC=SNP
+20	230053	rs55658058	C	T	.	.	VC=SNP
+20	230060	rs13037771	A	T	.	.	VC=SNP
+20	230177	rs401906	A	T	.	.	VC=SNP
+20	230248	rs13339931	C	T	.	.	VC=SNP
+20	230516	rs406449	A	T	.	.	VC=SNP
+20	230541	rs392808	A	T	.	.	VC=SNP
+20	230859	rs434058	C	T	.	.	VC=SNP
+20	230983	rs438305	C	T	.	.	VC=SNP
+20	231090	rs544836	A	G	.	.	VC=SNP
+20	231113	rs35421311	A	G	.	.	VC=SNP
+20	231114	rs6111453	A	G	.	.	VC=SNP
+20	231195	rs6105726	C	T	.	.	VC=SNP
+20	231312	rs386387	G	T	.	.	VC=SNP
+20	231505	rs451404	A	G	.	.	VC=SNP
+20	231676	rs62190550	A	G	.	.	VC=SNP
+20	231856	rs6111475	A	G	.	.	VC=SNP
+20	231982	rs6111481	A	G	.	.	VC=SNP
+20	232071	rs6111485	A	G	.	.	VC=SNP
+20	232107	rs366968	C	G	.	.	VC=SNP
+20	232389	rs13039528	G	T	.	.	VC=SNP
+20	232580	rs415385	C	G	.	.	VC=SNP
+20	233474	rs62190551	C	T	.	.	VC=SNP
+20	233475	rs62190552	A	G	.	.	VC=SNP
+20	233623	rs1774116	A	T	.	.	VC=SNP
+20	233858	rs4814621	G	T	.	.	VC=SNP
+20	233879	rs1774117	A	C	.	.	VC=SNP
+20	234161	rs4814624	A	G	.	.	VC=SNP
+20	234179	rs12624793	A	G	.	.	VC=SNP
+20	234207	rs6111550	C	T	.	.	VC=SNP
+20	234360	rs6080732	C	T	.	.	VC=SNP
+20	234373	rs6111556	C	T	.	.	VC=SNP
+20	234703	rs6034844	A	G	.	.	VC=SNP
+20	234710	rs6044877	C	T	.	.	VC=SNP
+20	234774	rs6034851	A	T	.	.	VC=SNP
+20	235107	rs416827	G	T	.	.	VC=SNP
+20	235532	rs6111589	C	T	.	.	VC=SNP
+20	235722	rs1737886	A	G	.	.	VC=SNP
+20	235923	rs2185715	C	T	.	.	VC=SNP
+20	235952	rs1316222	C	T	.	.	VC=SNP
+20	235970	rs2797461	C	G	.	.	VC=SNP
+20	236088	rs1737884	C	T	.	.	VC=SNP
+20	236102	rs56070851	G	T	.	.	VC=SNP
+20	236168	rs392400	C	T	.	.	VC=SNP
+20	236238	rs451497	A	G	.	.	VC=SNP
+20	236286	rs377053	A	G	.	.	VC=SNP
+20	236328	rs374107	A	C	.	.	VC=SNP
+20	236419	rs364544	A	G	.	.	VC=SNP
+20	236802	rs448294	C	T	.	.	VC=SNP
+20	236803	rs7363865	C	G	.	.	VC=SNP
+20	236828	rs6105811	A	G	.	.	VC=SNP
+20	236992	rs434609	C	T	.	.	VC=SNP
+20	237052	rs375084	C	G	.	.	VC=SNP
+20	237078	rs6111669	A	G	.	.	VC=SNP
+20	237411	rs56705888	C	T	.	.	VC=SNP
+20	237418	rs376396	A	G	.	.	VC=SNP
+20	237497	rs389018	A	G	.	.	VC=SNP
+20	237545	rs429072	C	T	.	.	VC=SNP
+20	237569	rs369474	A	C	.	.	VC=SNP
+20	237618	rs365548	A	T	.	.	VC=SNP
+20	237673	rs60182051	C	T	.	.	VC=SNP
+20	237677	rs6080864	C	T	.	.	VC=SNP
+20	237716	rs1819720	C	T	.	.	VC=SNP
+20	237756	rs57773004	C	T	.	.	VC=SNP
+20	237979	rs1737885	A	G	.	.	VC=SNP
+20	238020	rs446621	C	T	.	.	VC=SNP
+20	238236	rs62189854	A	G	.	.	VC=SNP
+20	238441	rs511643	C	T	.	.	VC=SNP
+20	238507	rs373225	A	C	.	.	VC=SNP
+20	238530	rs412143	G	T	.	.	VC=SNP
+20	238540	rs416360	C	T	.	.	VC=SNP
+20	238737	rs409547	C	T	.	.	VC=SNP
+20	239294	rs419762	C	T	.	.	VC=SNP
+20	239410	rs58397576	C	T	.	.	VC=SNP
+20	239420	rs62191387	A	T	.	.	VC=SNP
+20	239664	rs420525	C	T	.	.	VC=SNP
+20	239688	rs399083	A	G	.	.	VC=SNP
+20	239697	rs399094	C	G	.	.	VC=SNP
+20	240704	rs427969	A	T	.	.	VC=SNP
+20	240706	rs369103	A	T	.	.	VC=SNP
+20	240951	rs6045232	A	G	.	.	VC=SNP
+20	241131	rs6045240	C	T	.	.	VC=SNP
+20	241234	rs374235	A	G	.	.	VC=SNP
+20	241366	rs416096	A	G	.	.	VC=SNP
+20	241396	rs412889	A	T	.	.	VC=SNP
+20	241883	rs11697491	C	T	.	.	VC=SNP
+20	242236	rs6132043	C	T	.	.	VC=SNP
+20	242565	rs6045341	A	G	.	.	VC=SNP
+20	242585	rs512596	C	G	.	.	VC=SNP
+20	242674	rs6075321	C	T	.	.	VC=SNP
+20	242684	rs6035025	G	T	.	.	VC=SNP
+20	242685	rs513518	A	G	.	.	VC=SNP
+20	242694	rs6045353	C	T	.	.	VC=SNP
+20	242699	rs6045354	A	G	.	.	VC=SNP
+20	243147	rs6045377	C	T	.	.	VC=SNP
+20	243306	rs6045384	C	G	.	.	VC=SNP
+20	243352	rs6045392	G	T	.	.	VC=SNP
+20	243398	rs6045395	C	G	.	.	VC=SNP
+20	243420	rs6045396	C	T	.	.	VC=SNP
+20	243679	rs8123679	A	C	.	.	VC=SNP
+20	243924	rs6045425	A	C	.	.	VC=SNP
+20	244092	rs399379	C	G	.	.	VC=SNP
+20	244096	rs6045434	A	T	.	.	VC=SNP
+20	244141	rs7344964	A	G	.	.	VC=SNP
+20	244146	rs405543	C	T	.	.	VC=SNP
+20	244333	rs8125338	A	G	.	.	VC=SNP
+20	244373	rs55816200	C	T	.	.	VC=SNP
+20	244417	rs433918	A	G	.	.	VC=SNP
+20	244612	rs6081201	C	T	.	.	VC=SNP
+20	244659	rs6035067	C	T	.	.	VC=SNP
+20	244933	rs4814763	A	G	.	.	VC=SNP
+20	245003	rs4814765	A	T	.	.	VC=SNP
+20	245481	rs6045523	A	G	.	.	VC=SNP
+20	245662	rs60871954	G	T	.	.	VC=SNP
+20	245690	rs6035095	C	T	.	.	VC=SNP
+20	245752	rs6035097	C	T	.	.	VC=SNP
+20	245754	rs6045537	A	G	.	.	VC=SNP
+20	245930	rs6045553	A	G	.	.	VC=SNP
+20	245935	rs6112057	G	T	.	.	VC=SNP
+20	245944	rs6045555	C	T	.	.	VC=SNP
+20	246018	rs6045558	G	T	.	.	VC=SNP
+20	246392	rs1295179	C	T	.	.	VC=SNP
+20	246570	rs6081336	C	T	.	.	VC=SNP
+20	247506	rs61036368	G	T	.	.	VC=SNP
+20	247578	rs6045648	C	G	.	.	VC=SNP
+20	247647	rs415163	C	G	.	.	VC=SNP
+20	248064	rs421601	C	T	.	.	VC=SNP
+20	248529	rs57540414	A	C	.	.	VC=SNP
+20	248535	rs8119915	A	G	.	.	VC=SNP
+20	248621	rs11699922	C	G	.	.	VC=SNP
+20	248926	rs381295	A	C	.	.	VC=SNP
+20	248935	rs392961	A	T	.	.	VC=SNP
+20	249240	rs443121	A	T	.	.	VC=SNP
+20	249352	rs6075449	C	T	.	.	VC=SNP
+20	249416	rs28735779	A	C	.	.	VC=SNP
+20	249714	rs8121842	A	T	.	.	VC=SNP
+20	249829	rs6112212	C	T	.	.	VC=SNP
+20	249838	rs6045799	C	G	.	.	VC=SNP
+20	250027	rs34526486	A	C	.	.	VC=SNP
+20	250076	rs1076719	A	G	.	.	VC=SNP
+20	250571	rs2014541	A	G	.	.	VC=SNP
+20	250608	rs6075477	C	T	.	.	VC=SNP
+20	250934	rs6045881	G	T	.	.	VC=SNP
+20	251494	rs6045924	G	T	.	.	VC=SNP
+20	252092	rs420769	C	G	.	.	VC=SNP
+20	252165	rs513522	C	T	.	.	VC=SNP
+20	252721	rs8117711	A	T	.	.	VC=SNP
+20	252757	rs17399719	A	C	.	.	VC=SNP
+20	252762	rs62191388	A	T	.	.	VC=SNP
+20	252855	rs62191389	A	T	.	.	VC=SNP
+20	252876	rs6046026	C	T	.	.	VC=SNP
+20	254013	rs6046133	C	T	.	.	VC=SNP
+20	254544	rs13039402	A	G	.	.	VC=SNP
+20	254621	rs28409234	C	G	.	.	VC=SNP
+20	254766	rs6081647	C	T	.	.	VC=SNP
+20	254851	rs6081660	C	G	.	.	VC=SNP
+20	254933	rs11698734	A	T	.	.	VC=SNP
+20	254990	rs6081667	G	T	.	.	VC=SNP
+20	255240	rs13039523	C	T	.	.	VC=SNP
+20	255763	rs6112502	G	T	.	.	VC=SNP
+20	255882	rs6081706	A	G	.	.	VC=SNP
+20	256002	rs6112512	C	T	.	.	VC=SNP
+20	256107	rs6081708	C	T	.	.	VC=SNP
+20	256247	rs56702461	A	G	.	.	VC=SNP
+20	256283	rs6112528	C	T	.	.	VC=SNP
+20	256573	rs6075567	A	G	.	.	VC=SNP
+20	256727	rs3827147	A	T	.	.	VC=SNP
+20	256762	rs3827148	A	G	.	.	VC=SNP
+20	256763	rs61354763	C	G	.	.	VC=SNP
+20	256866	rs3827149	A	G	.	.	VC=SNP
+20	256886	rs3827150	A	G	.	.	VC=SNP
+20	256992	rs3827151	A	G	.	.	VC=SNP
+20	257026	rs3827152	A	G	.	.	VC=SNP
+20	257032	rs3827153	A	G	.	.	VC=SNP
+20	257320	rs2277779	A	G	.	.	VC=SNP
+20	257355	rs6035450	C	T	.	.	VC=SNP
+20	257586	rs6132236	C	G	.	.	VC=SNP
+20	257608	rs2277780	C	G	.	.	VC=SNP
+20	257658	rs45503891	A	G	.	.	VC=SNP
+20	257706	rs6046368	G	T	.	.	VC=SNP
+20	257733	rs2277781	A	G	.	.	VC=SNP
+20	257803	rs6075583	C	G	.	.	VC=SNP
+20	257812	rs6046375	C	T	.	.	VC=SNP
+20	258182	rs6046435	A	G	.	.	VC=SNP
+20	258191	rs6132242	C	G	.	.	VC=SNP
+20	258215	rs6136878	A	G	.	.	VC=SNP
+20	258295	rs6046446	G	T	.	.	VC=SNP
+20	258305	rs6046447	A	G	.	.	VC=SNP
+20	258449	rs59953878	C	T	.	.	VC=SNP
+20	258556	rs6132248	C	T	.	.	VC=SNP
+20	258711	rs6112676	C	T	.	.	VC=SNP
+20	258748	rs56860316	C	T	.	.	VC=SNP
+20	258820	rs8117412	C	T	.	.	VC=SNP
+20	258865	rs6046492	A	G	.	.	VC=SNP
+20	258928	rs6046494	A	G	.	.	VC=SNP
+20	259156	rs6035505	A	G	.	.	VC=SNP
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+20	259513	rs7270776	C	G	.	.	VC=SNP
+20	259818	rs6035541	A	G	.	.	VC=SNP
+20	259969	rs7271033	C	G	.	.	VC=SNP
+20	260400	rs6035552	C	G	.	.	VC=SNP
+20	260418	rs6106194	C	T	.	.	VC=SNP
+20	260521	rs6075623	C	G	.	.	VC=SNP
+20	260871	rs6112801	C	T	.	.	VC=SNP
+20	260980	rs6081910	C	T	.	.	VC=SNP
+20	261651	rs2316438	A	G	.	.	VC=SNP
+20	261700	rs6112834	A	G	.	.	VC=SNP
+20	261892	rs6136979	A	G	.	.	VC=SNP
+20	261898	rs6136980	A	G	.	.	VC=SNP
+20	261930	rs6136981	A	G	.	.	VC=SNP
+20	262570	rs6081964	C	T	.	.	VC=SNP
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+20	262893	rs6081976	C	T	.	.	VC=SNP
+20	262898	rs6081977	C	T	.	.	VC=SNP
+20	263011	rs7268073	G	T	.	.	VC=SNP
+20	263237	rs6081989	A	T	.	.	VC=SNP
+20	263386	rs6035623	A	G	.	.	VC=SNP
+20	263416	rs2316439	A	G	.	.	VC=SNP
+20	263660	rs6035628	C	T	.	.	VC=SNP
+20	263941	rs11906916	C	T	.	.	VC=SNP
+20	263969	rs6082013	A	G	.	.	VC=SNP
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+20	264176	rs8125727	C	G	.	.	VC=SNP
+20	264231	rs6112922	C	T	.	.	VC=SNP
+20	264272	rs13433243	A	C	.	.	VC=SNP
+20	264365	rs8125834	A	G	.	.	VC=SNP
+20	264404	rs41279014	C	G	.	.	VC=SNP
+20	264443	rs41279016	C	T	.	.	VC=SNP
+20	264472	rs41279018	A	G	.	.	VC=SNP
+20	264498	rs6137055	A	C	.	.	VC=SNP
+20	264764	rs6046931	A	C	.	.	VC=SNP
+20	264863	rs6046939	C	T	.	.	VC=SNP
+20	264867	rs4814979	A	G	.	.	VC=SNP
+20	264979	rs6082055	A	G	.	.	VC=SNP
+20	264997	rs6082056	A	G	.	.	VC=SNP
+20	265238	rs60474486	C	T	.	.	VC=SNP
+20	265365	rs6082066	A	G	.	.	VC=SNP
+20	265522	rs6075684	C	T	.	.	VC=SNP
+20	265791	rs61656024	C	T	.	.	VC=SNP
+20	265800	rs6106276	C	T	.	.	VC=SNP
+20	265889	rs6046987	A	G	.	.	VC=SNP
+20	265928	rs9967911	A	G	.	.	VC=SNP
+20	265968	rs6035671	C	T	.	.	VC=SNP
+20	266241	rs926614	G	T	.	.	VC=SNP
+20	266262	rs2009818	G	T	.	.	VC=SNP
+20	266379	rs2009825	C	T	.	.	VC=SNP
+20	266792	rs6137140	A	G	.	.	VC=SNP
+20	266936	rs6035690	C	T	.	.	VC=SNP
+20	267351	rs6082182	A	G	.	.	VC=SNP
+20	267453	rs6082191	A	C	.	.	VC=SNP
+20	267842	rs8118777	A	G	.	.	VC=SNP
+20	267878	rs6082211	C	T	.	.	VC=SNP
+20	267946	rs6075732	G	T	.	.	VC=SNP
+20	268075	rs6113040	A	T	.	.	VC=SNP
+20	268270	rs6082234	C	T	.	.	VC=SNP
+20	268299	rs6082236	A	G	.	.	VC=SNP
+20	268474	rs6082245	C	T	.	.	VC=SNP
+20	268478	rs13040528	A	T	.	.	VC=SNP
+20	268517	rs6082246	C	T	.	.	VC=SNP
+20	268573	rs13045566	G	T	.	.	VC=SNP
+20	268816	rs13036302	C	T	.	.	VC=SNP
+20	269006	rs6082267	C	T	.	.	VC=SNP
+20	269157	rs6047188	C	T	.	.	VC=SNP
+20	269690	rs926617	C	T	.	.	VC=SNP
+20	269703	rs11087339	A	C	.	.	VC=SNP
+20	269845	rs57263282	A	C	.	.	VC=SNP
+20	270081	rs59153605	A	G	.	.	VC=SNP
+20	270428	rs6035784	C	T	.	.	VC=SNP
+20	270634	rs6082334	A	G	.	.	VC=SNP
+20	270775	rs6047276	A	G	.	.	VC=SNP
+20	271168	rs7263309	C	G	.	.	VC=SNP
+20	271565	rs62191390	C	T	.	.	VC=SNP
+20	271892	rs13043110	G	T	.	.	VC=SNP
+20	271927	rs6047340	A	G	.	.	VC=SNP
+20	271956	rs6137305	C	G	.	.	VC=SNP
+20	271963	rs13040509	C	G	.	.	VC=SNP
+20	272099	rs6106354	C	T	.	.	VC=SNP
+20	272113	rs6106355	C	T	.	.	VC=SNP
+20	272437	rs6075791	A	G	.	.	VC=SNP
+20	272593	rs6075793	A	G	.	.	VC=SNP
+20	273030	rs6113218	A	G	.	.	VC=SNP
+20	274166	rs6082429	G	T	.	.	VC=SNP
+20	274333	rs6082431	C	T	.	.	VC=SNP
+20	274978	rs6082458	A	C	.	.	VC=SNP
+20	275027	rs60757271	A	T	.	.	VC=SNP
+20	275201	rs6075823	C	T	.	.	VC=SNP
+20	275650	rs6047536	G	T	.	.	VC=SNP
+20	277032	rs6047621	A	C	.	.	VC=SNP
+20	277617	rs3827154	C	T	.	.	VC=SNP
+20	277692	rs3746790	C	G	.	.	VC=SNP
+20	277832	rs1997793	C	T	.	.	VC=SNP
+20	278462	rs13043299	G	T	.	.	VC=SNP
+20	278487	rs4129184	A	C	.	.	VC=SNP
+20	278515	rs2223665	C	T	.	.	VC=SNP
+20	278761	rs4129183	G	T	.	.	VC=SNP
+20	278806	rs1057189	A	G	.	.	VC=SNP
+20	279152	rs62191391	A	G	.	.	VC=SNP
+20	279185	rs45569040	C	T	.	.	VC=SNP
+20	279314	rs6047809	C	T	.	.	VC=SNP
+20	279483	rs1046560	C	T	.	.	VC=SNP
+20	279774	rs1046561	A	C	.	.	VC=SNP
+20	280273	rs6047890	C	T	.	.	VC=SNP
+20	280809	rs2031	A	G	.	.	VC=SNP
+20	281780	rs1003440	C	T	.	.	VC=SNP
+20	282231	rs12151894	A	C	.	.	VC=SNP
+20	282422	rs6036086	A	T	.	.	VC=SNP
+20	282597	rs56016432	C	T	.	.	VC=SNP
+20	283180	rs6048067	A	G	.	.	VC=SNP
+20	283376	rs7268422	C	T	.	.	VC=SNP
+20	283535	rs2143528	A	G	.	.	VC=SNP
+20	283691	rs6137663	G	T	.	.	VC=SNP
+20	283718	rs6137667	G	T	.	.	VC=SNP
+20	283877	rs4815112	C	T	.	.	VC=SNP
+20	284048	rs6082712	A	C	.	.	VC=SNP
+20	284074	rs6036130	A	G	.	.	VC=SNP
+20	284353	rs6048149	C	G	.	.	VC=SNP
+20	284755	rs6082745	C	G	.	.	VC=SNP
+20	284814	rs6082746	C	T	.	.	VC=SNP
+20	284834	rs6075926	A	G	.	.	VC=SNP
+20	284901	rs11699144	C	T	.	.	VC=SNP
+20	284979	rs11697469	A	G	.	.	VC=SNP
+20	285009	rs12185783	C	G	.	.	VC=SNP
+20	285020	rs11087390	A	G	.	.	VC=SNP
+20	285094	rs12185771	C	T	.	.	VC=SNP
+20	285323	rs6048226	A	G	.	.	VC=SNP
+20	285349	rs11087392	C	G	.	.	VC=SNP
+20	285381	rs7260831	A	G	.	.	VC=SNP
+20	285539	rs57121998	C	T	.	.	VC=SNP
+20	285656	rs11087393	A	T	.	.	VC=SNP
+20	286028	rs6082786	A	G	.	.	VC=SNP
+20	286047	rs6082788	A	C	.	.	VC=SNP
+20	286487	rs4815138	A	G	.	.	VC=SNP
+20	286515	rs4815139	C	T	.	.	VC=SNP
+20	286526	rs4815140	A	C	.	.	VC=SNP
+20	286587	rs4815141	A	G	.	.	VC=SNP
+20	286838	rs6082812	A	C	.	.	VC=SNP
+20	286906	rs6113807	C	T	.	.	VC=SNP
+20	286912	rs6113808	A	C	.	.	VC=SNP
+20	286972	rs7263295	A	C	.	.	VC=SNP
+20	286979	rs7263296	A	C	.	.	VC=SNP
+20	286982	rs6082826	G	T	.	.	VC=SNP
+20	287020	rs6048342	A	G	.	.	VC=SNP
+20	287036	rs13039525	C	G	.	.	VC=SNP
+20	287054	rs6082835	C	T	.	.	VC=SNP
+20	287058	rs28559844	C	T	.	.	VC=SNP
+20	287106	rs6137752	C	T	.	.	VC=SNP
+20	287179	rs11696511	C	T	.	.	VC=SNP
+20	287246	rs6113816	A	G	.	.	VC=SNP
+20	287271	rs11697952	G	T	.	.	VC=SNP
+20	287286	rs2873204	C	T	.	.	VC=SNP
+20	287297	rs2316542	C	T	.	.	VC=SNP
+20	287311	rs2873205	C	T	.	.	VC=SNP
+20	287318	rs34026298	A	G	.	.	VC=SNP
+20	287359	rs34235802	A	G	.	.	VC=SNP
+20	287386	rs58640737	A	G	.	.	VC=SNP
+20	287420	rs6113819	C	T	.	.	VC=SNP
+20	287529	rs2316543	C	T	.	.	VC=SNP
+20	287637	rs2316544	C	G	.	.	VC=SNP
+20	288187	rs6137783	C	T	.	.	VC=SNP
+20	288233	rs6075980	A	G	.	.	VC=SNP
+20	288337	rs62191393	C	G	.	.	VC=SNP
+20	288367	rs6113846	A	C	.	.	VC=SNP
+20	288440	rs6048440	A	G	.	.	VC=SNP
+20	288446	rs6048441	A	G	.	.	VC=SNP
+20	288772	rs34607347	A	C	.	.	VC=SNP
+20	288776	rs4815163	C	T	.	.	VC=SNP
+20	288905	rs62191394	A	G	.	.	VC=SNP
+20	288922	rs6075996	A	G	.	.	VC=SNP
+20	288996	rs6082956	C	T	.	.	VC=SNP
+20	289063	rs12480763	A	C	.	.	VC=SNP
+20	289362	rs723477	C	T	.	.	VC=SNP
+20	289612	rs6082985	C	G	.	.	VC=SNP
+20	289785	rs4813476	A	G	.	.	VC=SNP
+20	290257	rs6113941	A	G	.	.	VC=SNP
+20	290281	rs6137828	C	T	.	.	VC=SNP
+20	290283	rs6137829	C	T	.	.	VC=SNP
+20	290297	rs6113944	G	T	.	.	VC=SNP
+20	290318	rs1028392	C	T	.	.	VC=SNP
+20	290763	rs6113967	G	T	.	.	VC=SNP
+20	290778	rs36012787	C	T	.	.	VC=SNP
+20	290949	rs6113977	A	G	.	.	VC=SNP
+20	291005	rs6113981	A	G	.	.	VC=SNP
+20	291020	rs6137861	C	T	.	.	VC=SNP
+20	291165	rs963278	G	T	.	.	VC=SNP
+20	291166	rs2316545	A	C	.	.	VC=SNP
+20	291167	rs34589157	G	T	.	.	VC=SNP
+20	291468	rs60273071	A	G	.	.	VC=SNP
+20	291472	rs28723448	A	T	.	.	VC=SNP
+20	291590	rs2235736	C	T	.	.	VC=SNP
+20	291751	rs2235737	C	G	.	.	VC=SNP
+20	291789	rs2235738	G	T	.	.	VC=SNP
+20	291881	rs6048655	C	T	.	.	VC=SNP
+20	291971	rs6048668	C	G	.	.	VC=SNP
+20	292327	rs6076049	C	T	.	.	VC=SNP
+20	292418	rs6076050	C	T	.	.	VC=SNP
+20	292435	rs6048715	G	T	.	.	VC=SNP
+20	292770	rs6106642	A	G	.	.	VC=SNP
+20	293624	rs28454625	A	G	.	.	VC=SNP
+20	293754	rs6083130	C	G	.	.	VC=SNP
+20	294247	rs6036434	A	G	.	.	VC=SNP
+20	294810	rs62191419	C	T	.	.	VC=SNP
+20	294916	rs6036446	A	G	.	.	VC=SNP
+20	295239	rs6114190	A	G	.	.	VC=SNP
+20	295312	rs6106687	C	T	.	.	VC=SNP
+20	295521	rs4815225	A	G	.	.	VC=SNP
+20	295780	rs6138028	A	G	.	.	VC=SNP
+20	295815	rs6138029	A	G	.	.	VC=SNP
+20	296079	rs6083220	A	G	.	.	VC=SNP
+20	296099	rs6036483	A	C	.	.	VC=SNP
+20	296172	rs6049002	C	T	.	.	VC=SNP
+20	296374	rs6049015	C	T	.	.	VC=SNP
+20	296653	rs6036511	C	T	.	.	VC=SNP
+20	297291	rs6049144	A	T	.	.	VC=SNP
+20	297668	rs35524308	C	T	.	.	VC=SNP
+20	298521	rs3932458	A	T	.	.	VC=SNP
+20	298735	rs6076167	A	C	.	.	VC=SNP
+20	298960	rs6114391	A	G	.	.	VC=SNP
+20	298987	rs6049278	C	G	.	.	VC=SNP
+20	299032	rs6083344	A	C	.	.	VC=SNP
+20	299068	rs6049284	A	G	.	.	VC=SNP
+20	299498	rs6049343	C	G	.	.	VC=SNP
+20	299587	rs62191420	A	C	.	.	VC=SNP
+20	299614	rs11905812	A	G	.	.	VC=SNP
+20	299615	rs6138192	C	T	.	.	VC=SNP
+20	299636	rs6049355	C	T	.	.	VC=SNP
+20	299759	rs6132693	G	T	.	.	VC=SNP
+20	300082	rs6049381	C	G	.	.	VC=SNP
+20	300505	rs34586064	C	G	.	.	VC=SNP
+20	300883	rs6083410	C	G	.	.	VC=SNP
+20	301641	rs28464258	C	T	.	.	VC=SNP
+20	301730	rs59419316	C	T	.	.	VC=SNP
+20	301894	rs6114578	A	G	.	.	VC=SNP
+20	301902	rs6114580	A	G	.	.	VC=SNP
+20	302357	rs6114653	A	G	.	.	VC=SNP
+20	302382	rs11907578	C	T	.	.	VC=SNP
+20	302946	rs11906159	A	G	.	.	VC=SNP
+20	303347	rs6114703	A	G	.	.	VC=SNP
+20	303388	rs57625615	A	G	.	.	VC=SNP
+20	303506	rs6114719	A	C	.	.	VC=SNP
+20	303510	rs60905943	G	T	.	.	VC=SNP
+20	303549	rs6114722	C	G	.	.	VC=SNP
+20	303643	rs59711917	C	T	.	.	VC=SNP
+20	303661	rs6036797	C	T	.	.	VC=SNP
+20	303879	rs6049711	A	T	.	.	VC=SNP
+20	303936	rs6106888	A	C	.	.	VC=SNP
+20	303975	rs34025345	A	G	.	.	VC=SNP
+20	304086	rs6036816	C	T	.	.	VC=SNP
+20	304221	rs6049740	C	T	.	.	VC=SNP
+20	304239	rs12624721	A	C	.	.	VC=SNP
+20	304275	rs7343180	C	G	.	.	VC=SNP
+20	304332	rs6114751	C	T	.	.	VC=SNP
+20	304335	rs6036828	A	G	.	.	VC=SNP
+20	304370	rs6106898	C	T	.	.	VC=SNP
+20	304479	rs6049756	A	G	.	.	VC=SNP
+20	304550	rs6049762	A	C	.	.	VC=SNP
+20	304800	rs6049789	A	G	.	.	VC=SNP
+20	304820	rs2268434	C	T	.	.	VC=SNP
+20	305180	rs6083565	C	G	.	.	VC=SNP
+20	305201	rs62191421	A	C	.	.	VC=SNP
+20	305407	rs6138337	G	T	.	.	VC=SNP
+20	306826	rs55875126	A	G	.	.	VC=SNP
+20	306902	rs35462946	C	T	.	.	VC=SNP
+20	307627	rs6050030	C	G	.	.	VC=SNP
+20	307641	rs55771757	A	G	.	.	VC=SNP
+20	307942	rs2268435	C	G	.	.	VC=SNP
+20	308189	rs1047506	C	G	.	.	VC=SNP
+20	308193	rs1047507	A	G	.	.	VC=SNP
+20	308359	rs8125160	C	T	.	.	VC=SNP
+20	308403	rs45451194	A	C	.	.	VC=SNP
+20	308557	rs1047508	C	G	.	.	VC=SNP
+20	308878	rs6050213	C	T	.	.	VC=SNP
+20	308923	rs6050226	A	C	.	.	VC=SNP
+20	308935	rs6050227	C	G	.	.	VC=SNP
+20	309462	rs6138468	G	T	.	.	VC=SNP
+20	309475	rs6138469	G	T	.	.	VC=SNP
+20	309494	rs34320029	C	T	.	.	VC=SNP
+20	309692	rs6050276	A	G	.	.	VC=SNP
+20	309926	rs55960158	A	G	.	.	VC=SNP
+20	310030	rs13043818	C	G	.	.	VC=SNP
+20	310269	rs6050323	C	G	.	.	VC=SNP
+20	310366	rs60860891	C	T	.	.	VC=SNP
+20	310474	rs7345645	C	T	.	.	VC=SNP
+20	310493	rs6050344	C	G	.	.	VC=SNP
+20	310597	rs62191422	G	T	.	.	VC=SNP
+20	310954	rs56054410	C	T	.	.	VC=SNP
+20	311009	rs13039624	A	G	.	.	VC=SNP
+20	311290	rs742608	A	G	.	.	VC=SNP
+20	311368	rs742609	C	T	.	.	VC=SNP
+20	311369	rs742610	C	G	.	.	VC=SNP
+20	311410	rs6138540	A	C	.	.	VC=SNP
+20	311760	rs12106240	A	G	.	.	VC=SNP
+20	312561	rs62191423	A	C	.	.	VC=SNP
+20	313139	rs6050580	C	T	.	.	VC=SNP
+20	313237	rs13039973	C	T	.	.	VC=SNP
+20	313308	rs6083846	C	G	.	.	VC=SNP
+20	313850	rs62191424	C	T	.	.	VC=SNP
+20	313876	rs7271542	A	G	.	.	VC=SNP
+20	314079	rs60695390	C	T	.	.	VC=SNP
+20	314164	rs56363351	G	T	.	.	VC=SNP
+20	314243	rs6037129	C	T	.	.	VC=SNP
+20	314408	rs6050659	C	T	.	.	VC=SNP
+20	314416	rs2179612	A	G	.	.	VC=SNP
+20	314465	rs6050661	C	T	.	.	VC=SNP
+20	314754	rs6037140	A	T	.	.	VC=SNP
+20	314964	rs11908266	A	T	.	.	VC=SNP
+20	314966	rs6050689	C	G	.	.	VC=SNP
+20	315842	rs6050773	C	T	.	.	VC=SNP
+20	316028	rs6037191	C	G	.	.	VC=SNP
+20	316055	rs6115254	A	G	.	.	VC=SNP
+20	316060	rs6107068	C	T	.	.	VC=SNP
+20	316211	rs35482695	C	G	.	.	VC=SNP
+20	316460	rs6083927	A	G	.	.	VC=SNP
+20	316481	rs60776326	G	T	.	.	VC=SNP
+20	316523	rs6083933	A	G	.	.	VC=SNP
+20	316911	rs13045081	C	T	.	.	VC=SNP
+20	316912	rs13038188	C	T	.	.	VC=SNP
+20	316921	rs13045084	C	T	.	.	VC=SNP
+20	316925	rs6050879	C	T	.	.	VC=SNP
+20	316931	rs6050881	C	T	.	.	VC=SNP
+20	316952	rs6115295	C	T	.	.	VC=SNP
+20	316961	rs13038211	C	T	.	.	VC=SNP
+20	316968	rs6050885	C	T	.	.	VC=SNP
+20	316980	rs13045112	C	T	.	.	VC=SNP
+20	317010	rs9753634	C	T	.	.	VC=SNP
+20	317135	rs11907447	A	G	.	.	VC=SNP
+20	317174	rs6050903	C	T	.	.	VC=SNP
+20	317266	rs6050905	C	T	.	.	VC=SNP
+20	317491	rs6050914	C	T	.	.	VC=SNP
+20	317658	rs35204794	C	T	.	.	VC=SNP
+20	317676	rs9753642	C	T	.	.	VC=SNP
+20	317702	rs62191425	A	C	.	.	VC=SNP
+20	317824	rs6107087	A	G	.	.	VC=SNP
+20	317890	rs6050952	A	G	.	.	VC=SNP
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+20	317937	rs11699258	C	G	.	.	VC=SNP
+20	317973	rs6050959	A	T	.	.	VC=SNP
+20	317985	rs6050961	C	T	.	.	VC=SNP
+20	318497	rs61583898	C	G	.	.	VC=SNP
+20	318513	rs6051002	A	C	.	.	VC=SNP
+20	318519	rs6037289	A	C	.	.	VC=SNP
+20	318521	rs11906480	A	C	.	.	VC=SNP
+20	318528	rs6107101	G	T	.	.	VC=SNP
+20	318534	rs6107102	G	T	.	.	VC=SNP
+20	318788	rs6037300	C	T	.	.	VC=SNP
+20	319050	rs6051074	C	T	.	.	VC=SNP
+20	319162	rs6051081	A	G	.	.	VC=SNP
+20	319321	rs6051088	C	T	.	.	VC=SNP
+20	320021	rs56074943	C	T	.	.	VC=SNP
+20	320063	rs6107133	C	T	.	.	VC=SNP
+20	320266	rs6051162	G	T	.	.	VC=SNP
+20	320344	rs6037329	A	G	.	.	VC=SNP
+20	320752	rs56931824	A	G	.	.	VC=SNP
+20	320868	rs28405668	C	T	.	.	VC=SNP
+20	320869	rs28374579	C	T	.	.	VC=SNP
+20	321407	rs1008223	A	G	.	.	VC=SNP
+20	322148	rs62191426	A	T	.	.	VC=SNP
+20	322612	rs6051321	C	T	.	.	VC=SNP
+20	323161	rs6138869	C	T	.	.	VC=SNP
+20	323187	rs6132961	C	T	.	.	VC=SNP
+20	323232	rs6132962	C	T	.	.	VC=SNP
+20	323250	rs10084515	C	T	.	.	VC=SNP
+20	323308	rs13038142	A	G	.	.	VC=SNP
+20	323583	rs6051328	C	T	.	.	VC=SNP
+20	324123	rs6051331	A	G	.	.	VC=SNP
+20	324263	rs6138872	C	T	.	.	VC=SNP
+20	324278	rs62191427	C	T	.	.	VC=SNP
+20	324469	rs6037389	A	G	.	.	VC=SNP
+20	324537	rs6037390	C	G	.	.	VC=SNP
+20	324998	rs7345252	C	G	.	.	VC=SNP
+20	325102	rs6084145	C	T	.	.	VC=SNP
+20	326016	rs6051353	C	T	.	.	VC=SNP
+20	326150	rs6051354	A	G	.	.	VC=SNP
+20	326478	rs6115656	C	T	.	.	VC=SNP
+20	327016	rs28372933	G	T	.	.	VC=SNP
+20	327463	rs11908539	A	G	.	.	VC=SNP
+20	327473	rs28372934	A	G	.	.	VC=SNP
+20	327655	rs28678888	C	G	.	.	VC=SNP
+20	328545	rs45546337	A	C	.	.	VC=SNP
+20	328560	rs45626235	C	G	.	.	VC=SNP
+20	328959	rs6051373	A	C	.	.	VC=SNP
+20	329302	rs6115664	A	G	.	.	VC=SNP
+20	329482	rs6051380	C	G	.	.	VC=SNP
+20	329713	rs7352054	A	C	.	.	VC=SNP
+20	329842	rs2092473	C	T	.	.	VC=SNP
+20	329864	rs41281228	A	G	.	.	VC=SNP
+20	329970	rs41281230	C	G	.	.	VC=SNP
+20	330317	rs34210936	A	G	.	.	VC=SNP
+20	330399	rs6115671	A	G	.	.	VC=SNP
+20	330408	rs11556643	C	G	.	.	VC=SNP
+20	330481	rs6115672	A	G	.	.	VC=SNP
+20	330996	rs6051396	A	G	.	.	VC=SNP
+20	331008	rs8183050	C	G	.	.	VC=SNP
+20	331320	rs34461261	A	G	.	.	VC=SNP
+20	331322	rs13037176	A	G	.	.	VC=SNP
+20	331354	rs2050205	A	G	.	.	VC=SNP
+20	331357	rs13043220	A	G	.	.	VC=SNP
+20	331465	rs6138896	G	T	.	.	VC=SNP
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+20	331655	rs6084171	C	T	.	.	VC=SNP
+20	331846	rs6084173	C	T	.	.	VC=SNP
+20	331914	rs60474483	C	T	.	.	VC=SNP
+20	331951	rs6115675	A	G	.	.	VC=SNP
+20	331954	rs6115676	A	G	.	.	VC=SNP
+20	332302	rs60992944	C	T	.	.	VC=SNP
+20	332578	rs6107194	C	T	.	.	VC=SNP
+20	332869	rs35580346	A	G	.	.	VC=SNP
+20	332884	rs57816274	A	G	.	.	VC=SNP
+20	333064	rs6138899	A	G	.	.	VC=SNP
+20	333463	rs6115682	A	G	.	.	VC=SNP
+20	333497	rs12106238	C	T	.	.	VC=SNP
+20	333857	rs17762763	A	T	.	.	VC=SNP
+20	333871	rs34012633	C	T	.	.	VC=SNP
+20	333973	rs6084179	A	G	.	.	VC=SNP
+20	334027	rs35896765	C	T	.	.	VC=SNP
+20	334142	rs35731713	C	G	.	.	VC=SNP
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+20	334464	rs11556644	A	G	.	.	VC=SNP
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+20	335266	rs17689536	C	G	.	.	VC=SNP
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+20	335621	rs11906152	A	G	.	.	VC=SNP
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+20	337262	rs6051433	A	G	.	.	VC=SNP
+20	337286	rs8123228	C	T	.	.	VC=SNP
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+20	338142	rs6115699	C	T	.	.	VC=SNP
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+20	338421	rs11907763	A	G	.	.	VC=SNP
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+20	338662	rs56333617	A	G	.	.	VC=SNP
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+20	339223	rs28652833	C	T	.	.	VC=SNP
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+20	339404	rs13038815	A	G	.	.	VC=SNP
+20	339405	rs13042377	A	G	.	.	VC=SNP
+20	339485	rs62191430	A	G	.	.	VC=SNP
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+20	340591	rs12479706	C	T	.	.	VC=SNP
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+20	341198	rs2004952	A	G	.	.	VC=SNP
+20	341200	rs2004951	A	G	.	.	VC=SNP
+20	341266	rs2003699	C	T	.	.	VC=SNP
+20	341868	rs6076438	A	G	.	.	VC=SNP
+20	341946	rs12480543	A	G	.	.	VC=SNP
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+20	342337	rs6115710	C	T	.	.	VC=SNP
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+20	342680	rs6084194	G	T	.	.	VC=SNP
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+20	342848	rs6138942	A	G	.	.	VC=SNP
+20	343282	rs58464972	C	T	.	.	VC=SNP
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+20	343758	rs7271406	A	G	.	.	VC=SNP
+20	343763	rs12479803	A	G	.	.	VC=SNP
+20	343854	rs6138951	A	G	.	.	VC=SNP
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+20	344308	rs6115721	C	T	.	.	VC=SNP
+20	344328	rs7264559	G	T	.	.	VC=SNP
+20	344357	rs6107210	C	T	.	.	VC=SNP
+20	344438	rs6115722	C	T	.	.	VC=SNP
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+20	344631	rs6084202	A	G	.	.	VC=SNP
+20	344817	rs55667253	C	T	.	.	VC=SNP
+20	344885	rs7264880	G	T	.	.	VC=SNP
+20	344888	rs58428784	C	T	.	.	VC=SNP
+20	345021	rs6076444	A	C	.	.	VC=SNP
+20	345125	rs61159143	C	T	.	.	VC=SNP
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+20	345165	rs6051485	G	T	.	.	VC=SNP
+20	345399	rs2017171	A	G	.	.	VC=SNP
+20	345617	rs1555318	A	G	.	.	VC=SNP
+20	345864	rs6051490	C	T	.	.	VC=SNP
+20	346676	rs56266078	C	T	.	.	VC=SNP
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+20	346772	rs60346531	C	G	.	.	VC=SNP
+20	346847	rs6138958	C	G	.	.	VC=SNP
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+20	346961	rs56267623	A	G	.	.	VC=SNP
+20	346970	rs62191431	A	G	.	.	VC=SNP
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+20	347009	rs55913983	A	C	.	.	VC=SNP
+20	347165	rs58365829	C	T	.	.	VC=SNP
+20	347202	rs6051494	A	G	.	.	VC=SNP
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+20	347382	rs13433115	C	T	.	.	VC=SNP
+20	347459	rs12480446	C	T	.	.	VC=SNP
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+20	347558	rs12479683	C	T	.	.	VC=SNP
+20	347581	rs12481060	A	G	.	.	VC=SNP
+20	347587	rs12479684	C	T	.	.	VC=SNP
+20	347590	rs12479685	C	T	.	.	VC=SNP
+20	347650	rs6084216	A	C	.	.	VC=SNP
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+20	347908	rs6084217	A	G	.	.	VC=SNP
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+20	348166	rs6076450	C	G	.	.	VC=SNP
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+20	348319	rs56215087	C	T	.	.	VC=SNP
+20	348334	rs16988276	A	G	.	.	VC=SNP
+20	348521	rs8116867	C	G	.	.	VC=SNP
+20	348776	rs6115743	G	T	.	.	VC=SNP
+20	348904	rs34031242	A	G	.	.	VC=SNP
+20	349118	rs34466294	C	T	.	.	VC=SNP
+20	349224	rs6084224	A	G	.	.	VC=SNP
+20	349306	rs4813620	C	G	.	.	VC=SNP
+20	349737	rs4813621	C	T	.	.	VC=SNP
+20	349928	rs35841454	C	T	.	.	VC=SNP
+20	349996	rs6051507	C	G	.	.	VC=SNP
+20	350158	rs4473461	A	G	.	.	VC=SNP
+20	350238	rs12479643	A	T	.	.	VC=SNP
+20	350490	rs6051511	C	T	.	.	VC=SNP
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+20	350675	rs58831683	A	C	.	.	VC=SNP
+20	350881	rs56221741	A	C	.	.	VC=SNP
+20	350930	rs7262298	C	T	.	.	VC=SNP
+20	351015	rs4815554	C	T	.	.	VC=SNP
+20	351070	rs6051513	A	G	.	.	VC=SNP
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+20	351226	rs6037446	A	C	.	.	VC=SNP
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+20	351666	rs7352013	G	T	.	.	VC=SNP
+20	351725	rs6037449	A	C	.	.	VC=SNP
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+20	352036	rs16988308	A	G	.	.	VC=SNP
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+20	352170	rs11087561	C	G	.	.	VC=SNP
+20	352428	rs16988312	A	C	.	.	VC=SNP
+20	352507	rs13433192	C	T	.	.	VC=SNP
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+20	353085	rs742605	A	G	.	.	VC=SNP
+20	353110	rs13433140	C	G	.	.	VC=SNP
+20	353208	rs2003700	A	C	.	.	VC=SNP
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+20	353379	rs2003702	G	T	.	.	VC=SNP
+20	353697	rs2316546	A	G	.	.	VC=SNP
+20	353709	rs6115756	C	T	.	.	VC=SNP
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+20	354338	rs6138980	C	G	.	.	VC=SNP
+20	354367	rs13433178	A	C	.	.	VC=SNP
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+20	354689	rs13433282	A	T	.	.	VC=SNP
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+20	355167	rs11698987	A	G	.	.	VC=SNP
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+20	355323	rs7360326	A	G	.	.	VC=SNP
+20	355333	rs6115760	C	T	.	.	VC=SNP
+20	355360	rs2316550	C	T	.	.	VC=SNP
+20	355370	rs2873206	C	T	.	.	VC=SNP
+20	355386	rs6037458	C	T	.	.	VC=SNP
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+20	358044	rs59549050	C	G	.	.	VC=SNP
+20	358381	rs4416290	C	T	.	.	VC=SNP
+20	358566	rs3848806	A	G	.	.	VC=SNP
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+20	359012	rs6037476	A	G	.	.	VC=SNP
+20	359373	rs61325267	A	G	.	.	VC=SNP
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+20	368883	rs61740293	A	G	.	.	VC=SNP
+20	368890	rs61740295	C	G	.	.	VC=SNP
+20	368904	rs55927097	C	T	.	.	VC=SNP
+20	368905	rs2295490	A	G	.	.	VC=SNP
+20	369051	rs7269378	A	G	.	.	VC=SNP
+20	369201	rs16988431	A	G	.	.	VC=SNP
+20	369428	rs8121580	A	G	.	.	VC=SNP
+20	370055	rs6107252	A	G	.	.	VC=SNP
+20	370150	rs12626158	A	G	.	.	VC=SNP
+20	370516	rs6133018	C	T	.	.	VC=SNP
+20	370686	rs6051626	A	G	.	.	VC=SNP
+20	370743	rs6051627	A	G	.	.	VC=SNP
+20	371238	rs56036288	C	T	.	.	VC=SNP
+20	371454	rs8124812	C	T	.	.	VC=SNP
+20	371525	rs11907666	A	T	.	.	VC=SNP
+20	371646	rs6107255	A	G	.	.	VC=SNP
+20	371781	rs8120854	C	T	.	.	VC=SNP
+20	371819	rs6051635	A	G	.	.	VC=SNP
+20	371972	rs6051637	C	T	.	.	VC=SNP
+20	372014	rs6084298	A	G	.	.	VC=SNP
+20	372076	rs41281850	A	G	.	.	VC=SNP
+20	372096	rs45583743	C	T	.	.	VC=SNP
+20	372097	rs35051116	A	G	.	.	VC=SNP
+20	372358	rs6051642	C	T	.	.	VC=SNP
+20	372742	rs60816831	G	T	.	.	VC=SNP
+20	373667	rs62191444	G	T	.	.	VC=SNP
+20	373836	rs9941773	A	C	.	.	VC=SNP
+20	374061	rs9941733	A	G	.	.	VC=SNP
+20	374676	rs6084310	C	T	.	.	VC=SNP
+20	374763	rs6051656	C	T	.	.	VC=SNP
+20	374936	rs6139038	A	G	.	.	VC=SNP
+20	374945	rs6084311	C	T	.	.	VC=SNP
+20	375047	rs35559145	G	T	.	.	VC=SNP
+20	375136	rs6051660	A	G	.	.	VC=SNP
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+20	375260	rs7361753	G	T	.	.	VC=SNP
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+20	375953	rs6037510	A	G	.	.	VC=SNP
+20	376465	rs2143527	C	G	.	.	VC=SNP
+20	376546	rs11906519	A	T	.	.	VC=SNP
+20	376817	rs6051675	C	G	.	.	VC=SNP
+20	376920	rs61744723	A	G	.	.	VC=SNP
+20	377078	rs56291463	A	G	.	.	VC=SNP
+20	377226	rs6115830	C	T	.	.	VC=SNP
+20	377283	rs6076497	C	G	.	.	VC=SNP
+20	377296	rs56342286	A	G	.	.	VC=SNP
+20	377423	rs6084315	C	T	.	.	VC=SNP
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+20	377547	rs4352283	A	C	.	.	VC=SNP
+20	377617	rs6051682	C	T	.	.	VC=SNP
+20	377810	rs11537607	C	T	.	.	VC=SNP
+20	377979	rs2295491	A	G	.	.	VC=SNP
+20	378242	rs2295492	C	G	.	.	VC=SNP
+20	378524	rs41281880	A	G	.	.	VC=SNP
+20	378783	rs6051696	G	T	.	.	VC=SNP
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+20	378971	rs6037524	A	G	.	.	VC=SNP
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+20	379116	rs60200650	A	T	.	.	VC=SNP
+20	379927	rs6139060	A	G	.	.	VC=SNP
+20	380602	rs6084326	A	G	.	.	VC=SNP
+20	380706	rs6139062	C	T	.	.	VC=SNP
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+20	380980	rs2145068	C	T	.	.	VC=SNP
+20	381132	rs56386109	C	T	.	.	VC=SNP
+20	381191	rs2145069	C	T	.	.	VC=SNP
+20	381321	rs2180561	A	G	.	.	VC=SNP
+20	381399	rs6084329	C	T	.	.	VC=SNP
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+20	381586	rs6084332	G	T	.	.	VC=SNP
+20	381937	rs6076503	C	T	.	.	VC=SNP
+20	382136	rs7346946	C	T	.	.	VC=SNP
+20	382346	rs13039980	A	C	.	.	VC=SNP
+20	382371	rs6133026	A	G	.	.	VC=SNP
+20	382559	rs6051725	C	T	.	.	VC=SNP
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+20	382726	rs35328267	A	G	.	.	VC=SNP
+20	382876	rs6037542	G	T	.	.	VC=SNP
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+20	383161	rs6133029	A	T	.	.	VC=SNP
+20	383172	rs59470552	A	C	.	.	VC=SNP
+20	383246	rs6115847	C	T	.	.	VC=SNP
+20	383720	rs4815579	C	T	.	.	VC=SNP
+20	384267	rs6115850	C	T	.	.	VC=SNP
+20	384341	rs6076509	A	G	.	.	VC=SNP
+20	384388	rs57620523	C	T	.	.	VC=SNP
+20	384503	rs6133033	C	G	.	.	VC=SNP
+20	384526	rs61551889	C	T	.	.	VC=SNP
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+20	384842	rs6139078	A	G	.	.	VC=SNP
+20	384898	rs6084337	A	G	.	.	VC=SNP
+20	385052	rs4815580	A	G	.	.	VC=SNP
+20	385090	rs35502160	C	T	.	.	VC=SNP
+20	385092	rs35025645	G	T	.	.	VC=SNP
+20	385160	rs35433762	A	G	.	.	VC=SNP
+20	385240	rs4815581	A	G	.	.	VC=SNP
+20	385302	rs35294814	C	G	.	.	VC=SNP
+20	385335	rs35761783	G	T	.	.	VC=SNP
+20	385522	rs11908611	A	G	.	.	VC=SNP
+20	385674	rs11908630	A	G	.	.	VC=SNP
+20	385747	rs11906302	A	G	.	.	VC=SNP
+20	385864	rs6037557	C	T	.	.	VC=SNP
+20	386122	rs6037558	C	T	.	.	VC=SNP
+20	386128	rs6051760	A	T	.	.	VC=SNP
+20	386204	rs6051765	C	T	.	.	VC=SNP
+20	386245	rs6139084	G	T	.	.	VC=SNP
+20	386298	rs6037559	A	G	.	.	VC=SNP
+20	386464	rs6115856	A	G	.	.	VC=SNP
+20	386586	rs8184728	C	T	.	.	VC=SNP
+20	387479	rs4815582	G	T	.	.	VC=SNP
+20	387727	rs6076510	A	G	.	.	VC=SNP
+20	387757	rs6084349	A	G	.	.	VC=SNP
+20	387815	rs6133035	A	G	.	.	VC=SNP
+20	388516	rs34892054	C	T	.	.	VC=SNP
+20	389201	rs6139097	A	G	.	.	VC=SNP
+20	389280	rs41306771	A	G	.	.	VC=SNP
+20	389456	rs3746792	C	T	.	.	VC=SNP
+20	389630	rs62191446	A	C	.	.	VC=SNP
+20	389881	rs4815585	C	T	.	.	VC=SNP
+20	389984	rs4815586	C	T	.	.	VC=SNP
+20	390251	rs8123007	C	G	.	.	VC=SNP
+20	390310	rs6139104	A	T	.	.	VC=SNP
+20	390384	rs60153029	A	G	.	.	VC=SNP
+20	390646	rs41281892	A	G	.	.	VC=SNP
+20	390911	rs6139108	A	G	.	.	VC=SNP
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+20	391170	rs7059	C	T	.	.	VC=SNP
+20	391564	rs6051833	A	G	.	.	VC=SNP
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+20	392803	rs6115874	G	T	.	.	VC=SNP
+20	393569	rs7267656	C	T	.	.	VC=SNP
+20	393648	rs6037593	A	G	.	.	VC=SNP
+20	393978	rs1358782	C	T	.	.	VC=SNP
+20	394585	rs6084373	A	C	.	.	VC=SNP
+20	394874	rs55844958	A	G	.	.	VC=SNP
+20	394899	rs28570506	A	T	.	.	VC=SNP
+20	394961	rs1129387	C	T	.	.	VC=SNP
+20	395015	rs6107288	C	T	.	.	VC=SNP
+20	395078	rs6115888	A	C	.	.	VC=SNP
+20	395732	rs6139126	A	G	.	.	VC=SNP
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+20	396156	rs56367061	A	G	.	.	VC=SNP
+20	396956	rs56140233	G	T	.	.	VC=SNP
+20	396978	rs8116493	G	T	.	.	VC=SNP
+20	397928	rs6115906	C	T	.	.	VC=SNP
+20	398197	rs6139131	G	T	.	.	VC=SNP
+20	398278	rs11698154	G	T	.	.	VC=SNP
+20	398599	rs62191448	C	T	.	.	VC=SNP
+20	398797	rs6051879	C	G	.	.	VC=SNP
+20	399215	rs7265211	A	T	.	.	VC=SNP
+20	399223	rs2316404	A	G	.	.	VC=SNP
+20	399245	rs4061743	C	T	.	.	VC=SNP
+20	399247	rs2316405	C	T	.	.	VC=SNP
+20	399268	rs6139134	C	T	.	.	VC=SNP
+20	399283	rs6051883	A	G	.	.	VC=SNP
+20	399302	rs6107294	A	G	.	.	VC=SNP
+20	399462	rs6115910	A	G	.	.	VC=SNP
+20	399520	rs11697052	A	G	.	.	VC=SNP
+20	399668	rs6115915	A	G	.	.	VC=SNP
+20	399761	rs959093	A	G	.	.	VC=SNP
+20	399768	rs6115916	A	G	.	.	VC=SNP
+20	399829	rs57454310	A	G	.	.	VC=SNP
+20	400357	rs2281553	G	T	.	.	VC=SNP
+20	400507	rs6051889	A	G	.	.	VC=SNP
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+20	400872	rs35073025	A	C	.	.	VC=SNP
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+20	401116	rs60715867	C	T	.	.	VC=SNP
+20	401184	rs4331586	A	C	.	.	VC=SNP
+20	401205	rs4635591	A	T	.	.	VC=SNP
+20	401938	rs7354339	C	T	.	.	VC=SNP
+20	402053	rs6051899	A	G	.	.	VC=SNP
+20	402158	rs62191449	A	G	.	.	VC=SNP
+20	402171	rs6051900	C	T	.	.	VC=SNP
+20	402440	rs2295493	A	G	.	.	VC=SNP
+20	402710	rs2057251	C	T	.	.	VC=SNP
+20	402921	rs6051905	C	G	.	.	VC=SNP
+20	403192	rs11906374	A	G	.	.	VC=SNP
+20	403653	rs6051908	G	T	.	.	VC=SNP
+20	403661	rs6107298	C	T	.	.	VC=SNP
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+20	403733	rs6107300	C	T	.	.	VC=SNP
+20	403897	rs59905706	C	T	.	.	VC=SNP
+20	403914	rs6084402	G	T	.	.	VC=SNP
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+20	404349	rs6107302	A	G	.	.	VC=SNP
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+20	404916	rs3787563	C	T	.	.	VC=SNP
+20	404947	rs11905546	A	T	.	.	VC=SNP
+20	405265	rs6139146	A	C	.	.	VC=SNP
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+20	405802	rs58002794	A	C	.	.	VC=SNP
+20	406058	rs6051934	C	T	.	.	VC=SNP
+20	406270	rs6051935	C	T	.	.	VC=SNP
+20	406559	rs6051936	A	G	.	.	VC=SNP
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+20	406795	rs12625895	A	G	.	.	VC=SNP
+20	406876	rs6051941	C	T	.	.	VC=SNP
+20	407059	rs6051942	C	T	.	.	VC=SNP
+20	407108	rs6051943	G	T	.	.	VC=SNP
+20	407390	rs11697821	C	T	.	.	VC=SNP
+20	407409	rs6076530	C	T	.	.	VC=SNP
+20	407541	rs6051946	C	G	.	.	VC=SNP
+20	407550	rs6051947	G	T	.	.	VC=SNP
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+20	408236	rs6051951	C	G	.	.	VC=SNP
+20	408253	rs1040755	A	T	.	.	VC=SNP
+20	408651	rs6051953	A	G	.	.	VC=SNP
+20	409292	rs6037624	C	T	.	.	VC=SNP
+20	409296	rs2273462	A	G	.	.	VC=SNP
+20	409346	rs57957698	C	T	.	.	VC=SNP
+20	409368	rs56003619	C	T	.	.	VC=SNP
+20	409802	rs6051957	C	T	.	.	VC=SNP
+20	410034	rs62189969	C	T	.	.	VC=SNP
+20	410249	rs60540117	C	T	.	.	VC=SNP
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+20	410898	rs41279374	A	C	.	.	VC=SNP
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+20	411319	rs41279378	C	T	.	.	VC=SNP
+20	411727	rs41279380	C	G	.	.	VC=SNP
+20	411733	rs41279382	A	G	.	.	VC=SNP
+20	411773	rs2295494	C	T	.	.	VC=SNP
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+20	411894	rs6051967	A	G	.	.	VC=SNP
+20	413414	rs6051971	A	G	.	.	VC=SNP
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+20	414645	rs1810588	A	C	.	.	VC=SNP
+20	414654	rs6107322	G	T	.	.	VC=SNP
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+20	414881	rs6051985	A	G	.	.	VC=SNP
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+20	415487	rs4142271	C	T	.	.	VC=SNP
+20	415592	rs6037641	C	T	.	.	VC=SNP
+20	416015	rs6115974	A	G	.	.	VC=SNP
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+20	416149	rs6695	A	G	.	.	VC=SNP
+20	416200	rs6115976	A	G	.	.	VC=SNP
+20	416400	rs11553433	A	G	.	.	VC=SNP
+20	416956	rs6052000	C	T	.	.	VC=SNP
+20	416980	rs41309353	A	G	.	.	VC=SNP
+20	417414	rs6115980	C	T	.	.	VC=SNP
+20	417499	rs41301842	A	G	.	.	VC=SNP
+20	417612	rs6052005	C	T	.	.	VC=SNP
+20	417718	rs7508969	A	C	.	.	VC=SNP
+20	418199	rs3746793	A	T	.	.	VC=SNP
+20	418267	rs6052008	C	G	.	.	VC=SNP
+20	418334	rs6115983	A	G	.	.	VC=SNP
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+20	418832	rs62189970	A	G	.	.	VC=SNP
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+20	418974	rs6107329	C	G	.	.	VC=SNP
+20	418983	rs6107330	C	G	.	.	VC=SNP
+20	419067	rs3746794	C	T	.	.	VC=SNP
+20	419437	rs35306023	A	G	.	.	VC=SNP
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+20	422348	rs6084439	G	T	.	.	VC=SNP
+20	422644	rs62189971	A	T	.	.	VC=SNP
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+20	423468	rs7271706	A	G	.	.	VC=SNP
+20	423996	rs62189972	G	T	.	.	VC=SNP
+20	424148	rs11697390	A	C	.	.	VC=SNP
+20	424198	rs6139186	C	G	.	.	VC=SNP
+20	424565	rs6116001	C	T	.	.	VC=SNP
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+20	424793	rs62189973	A	G	.	.	VC=SNP
+20	424852	rs6116003	A	G	.	.	VC=SNP
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+20	425303	rs6133058	C	G	.	.	VC=SNP
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+20	427100	rs11087602	G	T	.	.	VC=SNP
+20	427173	rs6515823	C	T	.	.	VC=SNP
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+20	428553	rs36088178	A	G	.	.	VC=SNP
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+20	434731	rs8115998	A	C	.	.	VC=SNP
+20	434747	rs61217622	C	G	.	.	VC=SNP
+20	434752	rs6084486	C	T	.	.	VC=SNP
+20	434786	rs6076558	C	T	.	.	VC=SNP
+20	434834	rs6076559	C	T	.	.	VC=SNP
+20	435124	rs11907460	A	G	.	.	VC=SNP
+20	435125	rs11905195	A	C	.	.	VC=SNP
+20	435258	rs6515826	A	T	.	.	VC=SNP
+20	435442	rs6052112	C	G	.	.	VC=SNP
+20	436194	rs284910	A	G	.	.	VC=SNP
+20	436361	rs376506	A	G	.	.	VC=SNP
+20	436587	rs34638726	A	C	.	.	VC=SNP
+20	436690	rs12480041	C	T	.	.	VC=SNP
+20	436697	rs284911	A	G	.	.	VC=SNP
+20	436878	rs11087607	A	G	.	.	VC=SNP
+20	436923	rs11087608	A	G	.	.	VC=SNP
+20	437462	rs284912	A	G	.	.	VC=SNP
+20	437723	rs6084501	A	G	.	.	VC=SNP
+20	437825	rs34687715	C	G	.	.	VC=SNP
+20	438919	rs34320567	A	G	.	.	VC=SNP
+20	438975	rs205897	A	T	.	.	VC=SNP
+20	439105	rs157795	A	G	.	.	VC=SNP
+20	439433	rs6116073	A	G	.	.	VC=SNP
+20	439539	rs6116074	A	G	.	.	VC=SNP
+20	439556	rs6116075	A	G	.	.	VC=SNP
+20	439588	rs6107359	C	T	.	.	VC=SNP
+20	440443	rs150207	C	T	.	.	VC=SNP
+20	440853	rs55653158	A	G	.	.	VC=SNP
+20	441108	rs157796	C	G	.	.	VC=SNP
+20	441560	rs6116082	C	T	.	.	VC=SNP
+20	441747	rs157797	C	T	.	.	VC=SNP
+20	441991	rs157798	C	G	.	.	VC=SNP
+20	442058	rs60906477	C	G	.	.	VC=SNP
+20	442070	rs6116083	A	G	.	.	VC=SNP
+20	442295	rs157799	A	G	.	.	VC=SNP
+20	442323	rs157800	A	T	.	.	VC=SNP
+20	442937	rs708978	C	G	.	.	VC=SNP
+20	443152	rs6107369	A	C	.	.	VC=SNP
+20	443798	rs205898	A	G	.	.	VC=SNP
+20	443896	rs157801	C	G	.	.	VC=SNP
+20	444485	rs466374	A	G	.	.	VC=SNP
+20	444588	rs461890	C	T	.	.	VC=SNP
+20	445043	rs6037696	A	G	.	.	VC=SNP
+20	445746	rs6076569	C	G	.	.	VC=SNP
+20	445791	rs58473387	G	T	.	.	VC=SNP
+20	446309	rs6107375	C	G	.	.	VC=SNP
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+20	446673	rs6076573	A	T	.	.	VC=SNP
+20	446677	rs6084522	A	T	.	.	VC=SNP
+20	446852	rs6116114	A	T	.	.	VC=SNP
+20	447086	rs56699574	A	T	.	.	VC=SNP
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+20	447283	rs6084529	A	G	.	.	VC=SNP
+20	447285	rs62189974	A	G	.	.	VC=SNP
+20	447453	rs56890869	A	C	.	.	VC=SNP
+20	447531	rs59054348	C	T	.	.	VC=SNP
+20	447692	rs57984024	A	G	.	.	VC=SNP
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+20	448503	rs6052195	G	T	.	.	VC=SNP
+20	448659	rs205900	A	G	.	.	VC=SNP
+20	448913	rs150208	G	T	.	.	VC=SNP
+20	448924	rs6052197	A	G	.	.	VC=SNP
+20	449153	rs2873157	A	G	.	.	VC=SNP
+20	449275	rs2136774	C	T	.	.	VC=SNP
+20	449550	rs11906090	C	T	.	.	VC=SNP
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+20	449918	rs6116143	G	T	.	.	VC=SNP
+20	450093	rs59870475	C	T	.	.	VC=SNP
+20	450551	rs6052212	A	G	.	.	VC=SNP
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+20	451012	rs6052216	A	G	.	.	VC=SNP
+20	451343	rs36173443	A	T	.	.	VC=SNP
+20	451355	rs36143769	A	C	.	.	VC=SNP
+20	451374	rs34361993	A	C	.	.	VC=SNP
+20	451401	rs58844196	G	T	.	.	VC=SNP
+20	451402	rs59627628	G	T	.	.	VC=SNP
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+20	451812	rs157809	C	G	.	.	VC=SNP
+20	452316	rs62189975	G	T	.	.	VC=SNP
+20	452757	rs6116150	C	T	.	.	VC=SNP
+20	453101	rs150209	A	G	.	.	VC=SNP
+20	453184	rs6052238	C	T	.	.	VC=SNP
+20	453209	rs7363015	A	G	.	.	VC=SNP
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+20	453762	rs6037720	G	T	.	.	VC=SNP
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+20	455309	rs6076585	C	T	.	.	VC=SNP
+20	455348	rs6076586	C	T	.	.	VC=SNP
+20	455365	rs6107396	A	G	.	.	VC=SNP
+20	455449	rs60795699	A	T	.	.	VC=SNP
+20	455540	rs6139272	C	T	.	.	VC=SNP
+20	455730	rs157808	A	G	.	.	VC=SNP
+20	455764	rs6116159	A	G	.	.	VC=SNP
+20	455835	rs87167	A	C	.	.	VC=SNP
+20	456051	rs6037724	C	T	.	.	VC=SNP
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+20	456249	rs77726	A	G	.	.	VC=SNP
+20	456452	rs77725	A	G	.	.	VC=SNP
+20	456473	rs157807	C	T	.	.	VC=SNP
+20	456717	rs157806	A	G	.	.	VC=SNP
+20	456984	rs62189976	C	T	.	.	VC=SNP
+20	457240	rs157805	C	T	.	.	VC=SNP
+20	457251	rs157804	C	T	.	.	VC=SNP
+20	457367	rs157803	A	G	.	.	VC=SNP
+20	457572	rs6116174	C	T	.	.	VC=SNP
+20	457824	rs57930387	C	T	.	.	VC=SNP
+20	458373	rs157802	C	T	.	.	VC=SNP
+20	458682	rs7267444	A	G	.	.	VC=SNP
+20	459108	rs59393752	C	T	.	.	VC=SNP
+20	459403	rs6116180	C	G	.	.	VC=SNP
+20	459408	rs62189977	A	C	.	.	VC=SNP
+20	459430	rs62189978	A	T	.	.	VC=SNP
+20	459436	rs6133078	A	C	.	.	VC=SNP
+20	459506	rs455693	C	T	.	.	VC=SNP
+20	459519	rs6052304	C	T	.	.	VC=SNP
+20	459609	rs6052307	C	G	.	.	VC=SNP
+20	459654	rs464331	A	T	.	.	VC=SNP
+20	459720	rs458502	C	T	.	.	VC=SNP
+20	459820	rs6052311	A	G	.	.	VC=SNP
+20	460638	rs6076606	C	T	.	.	VC=SNP
+20	460720	rs6084599	C	T	.	.	VC=SNP
+20	460774	rs6052320	C	T	.	.	VC=SNP
+20	460878	rs55808587	G	T	.	.	VC=SNP
+20	461637	rs57087517	C	T	.	.	VC=SNP
+20	461729	rs6107408	C	T	.	.	VC=SNP
+20	461819	rs3746795	A	G	.	.	VC=SNP
+20	461973	rs3746796	A	C	.	.	VC=SNP
+20	462008	rs459012	C	T	.	.	VC=SNP
+20	462695	rs7352234	G	T	.	.	VC=SNP
+20	462769	rs56985349	A	G	.	.	VC=SNP
+20	463139	rs6139314	C	T	.	.	VC=SNP
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+20	463608	rs41279418	A	T	.	.	VC=SNP
+20	463753	rs13041220	C	G	.	.	VC=SNP
+20	463926	rs6084629	C	T	.	.	VC=SNP
+20	463995	rs459710	C	T	.	.	VC=SNP
+20	464622	rs61740435	A	G	.	.	VC=SNP
+20	464701	rs61745777	C	T	.	.	VC=SNP
+20	464702	rs61747403	C	T	.	.	VC=SNP
+20	464877	rs12625429	C	T	.	.	VC=SNP
+20	465201	rs28571018	C	T	.	.	VC=SNP
+20	465574	rs2006043	C	G	.	.	VC=SNP
+20	465753	rs11698784	A	T	.	.	VC=SNP
+20	465818	rs13037070	A	G	.	.	VC=SNP
+20	466023	rs34601532	C	T	.	.	VC=SNP
+20	466297	rs6116230	A	G	.	.	VC=SNP
+20	466544	rs6133092	C	T	.	.	VC=SNP
+20	466597	rs2268627	C	T	.	.	VC=SNP
+20	467044	rs61745803	A	G	.	.	VC=SNP
+20	467048	rs61748899	A	G	.	.	VC=SNP
+20	467196	rs10222037	C	T	.	.	VC=SNP
+20	467283	rs409994	C	G	.	.	VC=SNP
+20	467332	rs465570	G	T	.	.	VC=SNP
+20	467358	rs461944	A	G	.	.	VC=SNP
+20	467649	rs6052404	A	C	.	.	VC=SNP
+20	468001	rs6116240	C	T	.	.	VC=SNP
+20	468185	rs61748900	A	C	.	.	VC=SNP
+20	468186	rs41306790	A	G	.	.	VC=SNP
+20	468570	rs6052413	A	C	.	.	VC=SNP
+20	468729	rs6107416	A	G	.	.	VC=SNP
+20	468737	rs6052414	C	T	.	.	VC=SNP
+20	469404	rs61742776	G	T	.	.	VC=SNP
+20	469404	rs4243927	A	C	.	.	VC=SNP
+20	469941	rs6139350	A	C	.	.	VC=SNP
+20	470264	rs45487492	A	G	.	.	VC=SNP
+20	470337	rs7268697	A	C	.	.	VC=SNP
+20	470440	rs61872109	C	T	.	.	VC=SNP
+20	470440	rs61730060	A	G	.	.	VC=SNP
+20	470496	rs41488951	A	T	.	.	VC=SNP
+20	470732	rs7274861	A	G	.	.	VC=SNP
+20	470762	rs56066171	A	G	.	.	VC=SNP
+20	470794	rs6116247	A	G	.	.	VC=SNP
+20	470958	rs454144	A	C	.	.	VC=SNP
+20	470997	rs6116249	G	T	.	.	VC=SNP
+20	470998	rs13044016	G	T	.	.	VC=SNP
+20	471166	rs28659946	C	G	.	.	VC=SNP
+20	471450	rs6052427	A	G	.	.	VC=SNP
+20	471553	rs34362304	A	C	.	.	VC=SNP
+20	471625	rs4815664	A	G	.	.	VC=SNP
+20	471745	rs6052430	A	G	.	.	VC=SNP
+20	471827	rs6037784	C	T	.	.	VC=SNP
+20	471843	rs6052431	A	G	.	.	VC=SNP
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+20	473592	rs157813	A	G	.	.	VC=SNP
+20	473771	rs8115325	C	T	.	.	VC=SNP
+20	473810	rs6133095	C	T	.	.	VC=SNP
+20	473846	rs205902	A	T	.	.	VC=SNP
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+20	474358	rs59067999	C	G	.	.	VC=SNP
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+20	474717	rs7268529	C	G	.	.	VC=SNP
+20	475187	rs55715142	C	T	.	.	VC=SNP
+20	475690	rs6052448	C	T	.	.	VC=SNP
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+20	476011	rs6052451	C	T	.	.	VC=SNP
+20	476285	rs157816	C	T	.	.	VC=SNP
+20	476466	rs11699583	C	G	.	.	VC=SNP
+20	476469	rs41310171	A	G	.	.	VC=SNP
+20	477479	rs62189979	A	T	.	.	VC=SNP
+20	477514	rs6076641	C	T	.	.	VC=SNP
+20	478002	rs6139369	A	G	.	.	VC=SNP
+20	478393	rs61730061	C	T	.	.	VC=SNP
+20	478393	rs56570503	A	G	.	.	VC=SNP
+20	478407	rs61738494	A	C	.	.	VC=SNP
+20	478407	rs56548138	G	T	.	.	VC=SNP
+20	479029	rs6084679	A	G	.	.	VC=SNP
+20	479099	rs6084681	C	T	.	.	VC=SNP
+20	479319	rs205903	A	G	.	.	VC=SNP
+20	479418	rs6037802	C	T	.	.	VC=SNP
+20	479450	rs16989513	C	T	.	.	VC=SNP
+20	480194	rs57761836	A	G	.	.	VC=SNP
+20	480620	rs205904	A	T	.	.	VC=SNP
+20	480851	rs4813683	C	T	.	.	VC=SNP
+20	481193	rs56272098	A	G	.	.	VC=SNP
+20	481313	rs205905	C	T	.	.	VC=SNP
+20	481607	rs6052492	A	T	.	.	VC=SNP
+20	481639	rs16989592	G	T	.	.	VC=SNP
+20	482114	rs6037810	A	G	.	.	VC=SNP
+20	482178	rs11907152	C	T	.	.	VC=SNP
+20	482591	rs60104152	C	T	.	.	VC=SNP
+20	483084	rs60179262	C	G	.	.	VC=SNP
+20	483645	rs16989612	A	C	.	.	VC=SNP
+20	483705	rs6052504	A	G	.	.	VC=SNP
+20	483986	rs6116314	C	T	.	.	VC=SNP
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+20	484732	rs57744916	A	T	.	.	VC=SNP
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+20	484814	rs62189980	C	T	.	.	VC=SNP
+20	485180	rs11905024	C	T	.	.	VC=SNP
+20	485233	rs6084703	A	C	.	.	VC=SNP
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+20	485783	rs55924551	C	T	.	.	VC=SNP
+20	485864	rs55903724	A	G	.	.	VC=SNP
+20	486247	rs6052519	C	T	.	.	VC=SNP
+20	486286	rs6052520	A	G	.	.	VC=SNP
+20	486549	rs11697012	C	T	.	.	VC=SNP
+20	486580	rs2665785	A	G	.	.	VC=SNP
+20	486581	rs57119691	C	T	.	.	VC=SNP
+20	486714	rs6052523	A	G	.	.	VC=SNP
+20	486722	rs7267728	A	G	.	.	VC=SNP
+20	486723	rs11087635	C	T	.	.	VC=SNP
+20	486724	rs11087636	A	G	.	.	VC=SNP
+20	486728	rs6037823	A	G	.	.	VC=SNP
+20	486741	rs205880	C	T	.	.	VC=SNP
+20	486742	rs2857002	C	G	.	.	VC=SNP
+20	486767	rs12480598	A	G	.	.	VC=SNP
+20	486771	rs205881	C	T	.	.	VC=SNP
+20	486794	rs11696480	A	C	.	.	VC=SNP
+20	486810	rs12480604	A	G	.	.	VC=SNP
+20	486812	rs12479649	A	G	.	.	VC=SNP
+20	487303	rs205882	C	T	.	.	VC=SNP
+20	487461	rs61536734	A	T	.	.	VC=SNP
+20	487776	rs6084714	A	G	.	.	VC=SNP
+20	488065	rs6133112	C	G	.	.	VC=SNP
+20	488322	rs7345879	G	T	.	.	VC=SNP
+20	488433	rs68488	A	C	.	.	VC=SNP
+20	488611	rs127316	A	G	.	.	VC=SNP
+20	488918	rs60160571	A	C	.	.	VC=SNP
+20	488930	rs74119	A	G	.	.	VC=SNP
+20	489009	rs6037828	C	T	.	.	VC=SNP
+20	489183	rs61730199	A	G	.	.	VC=SNP
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+20	491328	rs7343345	A	G	.	.	VC=SNP
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+20	492349	rs428129	C	T	.	.	VC=SNP
+20	492758	rs433458	C	T	.	.	VC=SNP
+20	492830	rs6116344	C	T	.	.	VC=SNP
+20	492838	rs55674800	C	T	.	.	VC=SNP
+20	493174	rs6037833	A	G	.	.	VC=SNP
+20	493205	rs4815701	G	T	.	.	VC=SNP
+20	493243	rs434410	C	T	.	.	VC=SNP
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+20	493660	rs11699261	G	T	.	.	VC=SNP
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+20	494779	rs4815704	A	G	.	.	VC=SNP
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+20	495377	rs60761376	C	T	.	.	VC=SNP
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+20	499029	rs8182979	A	G	.	.	VC=SNP
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+20	500293	rs58317189	C	T	.	.	VC=SNP
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+20	507329	rs6037872	A	G	.	.	VC=SNP
+20	507353	rs57792272	A	C	.	.	VC=SNP
+20	507629	rs6116417	A	G	.	.	VC=SNP
+20	507645	rs28686784	C	G	.	.	VC=SNP
+20	507649	rs6116418	C	G	.	.	VC=SNP
+20	508426	rs371632	A	G	.	.	VC=SNP
+20	508478	rs7267671	C	T	.	.	VC=SNP
+20	508960	rs6116427	A	G	.	.	VC=SNP
+20	509504	rs56140686	A	G	.	.	VC=SNP
+20	509772	rs6107484	C	T	.	.	VC=SNP
+20	509968	rs59914992	C	G	.	.	VC=SNP
+20	510255	rs8183122	A	C	.	.	VC=SNP
+20	510992	rs6052663	A	G	.	.	VC=SNP
+20	511131	rs6052666	A	G	.	.	VC=SNP
+20	511209	rs6076704	C	T	.	.	VC=SNP
+20	511356	rs6084802	A	C	.	.	VC=SNP
+20	511897	rs205908	A	G	.	.	VC=SNP
+20	512042	rs6116442	A	G	.	.	VC=SNP
+20	512067	rs205907	A	G	.	.	VC=SNP
+20	512226	rs6107490	G	T	.	.	VC=SNP
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+20	512391	rs6116446	A	G	.	.	VC=SNP
+20	512971	rs2175304	A	G	.	.	VC=SNP
+20	512997	rs176166	A	C	.	.	VC=SNP
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+20	514530	rs60858826	A	G	.	.	VC=SNP
+20	515455	rs6037905	C	T	.	.	VC=SNP
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+20	516122	rs61514425	A	G	.	.	VC=SNP
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+20	517069	rs60085988	A	G	.	.	VC=SNP
+20	517161	rs8117831	C	T	.	.	VC=SNP
+20	517834	rs6052738	A	G	.	.	VC=SNP
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+20	520057	rs60048326	A	G	.	.	VC=SNP
+20	520471	rs6515923	C	G	.	.	VC=SNP
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+20	522905	rs55990122	A	T	.	.	VC=SNP
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+20	523267	rs8122783	A	G	.	.	VC=SNP
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+20	523699	rs7361803	C	T	.	.	VC=SNP
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+20	524162	rs62190006	C	G	.	.	VC=SNP
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+20	525493	rs6116499	A	G	.	.	VC=SNP
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+20	526156	rs7268204	C	G	.	.	VC=SNP
+20	526199	rs6116500	A	G	.	.	VC=SNP
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+20	527967	rs6116505	A	G	.	.	VC=SNP
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+20	529140	rs6084885	A	T	.	.	VC=SNP
+20	529221	rs13433126	A	T	.	.	VC=SNP
+20	529416	rs13038615	A	G	.	.	VC=SNP
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+20	529448	rs13037351	A	T	.	.	VC=SNP
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+20	529683	rs6116506	G	T	.	.	VC=SNP
+20	529692	rs4476410	C	T	.	.	VC=SNP
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+20	530302	rs4815741	G	T	.	.	VC=SNP
+20	530310	rs4815742	G	T	.	.	VC=SNP
+20	530458	rs6116510	A	G	.	.	VC=SNP
+20	530490	rs6052871	A	G	.	.	VC=SNP
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+20	530812	rs6116511	C	T	.	.	VC=SNP
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+20	531174	rs157438	A	C	.	.	VC=SNP
+20	531218	rs733490	G	T	.	.	VC=SNP
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+20	531544	rs60757848	A	T	.	.	VC=SNP
+20	531978	rs188205	A	C	.	.	VC=SNP
+20	532059	rs204661	A	T	.	.	VC=SNP
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+20	532103	rs204663	C	G	.	.	VC=SNP
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+20	532805	rs204664	A	G	.	.	VC=SNP
+20	532863	rs61579360	C	T	.	.	VC=SNP
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+20	532925	rs204666	A	G	.	.	VC=SNP
+20	533377	rs28532301	C	T	.	.	VC=SNP
+20	533512	rs6116526	C	T	.	.	VC=SNP
+20	533753	rs12329485	A	G	.	.	VC=SNP
+20	533889	rs204667	C	G	.	.	VC=SNP
+20	533953	rs6076741	C	G	.	.	VC=SNP
+20	534166	rs13040123	A	T	.	.	VC=SNP
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+20	534498	rs7268223	A	G	.	.	VC=SNP
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+20	535213	rs62190007	A	C	.	.	VC=SNP
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+20	535497	rs204669	A	T	.	.	VC=SNP
+20	536145	rs374132	A	G	.	.	VC=SNP
+20	536429	rs6037986	A	G	.	.	VC=SNP
+20	536536	rs204670	G	T	.	.	VC=SNP
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+20	537505	rs204677	A	C	.	.	VC=SNP
+20	537527	rs57883180	A	T	.	.	VC=SNP
+20	537678	rs204678	C	T	.	.	VC=SNP
+20	537715	rs402907	G	T	.	.	VC=SNP
+20	537819	rs368904	A	C	.	.	VC=SNP
+20	537820	rs368903	A	T	.	.	VC=SNP
+20	538197	rs367690	A	G	.	.	VC=SNP
+20	538203	rs454174	C	T	.	.	VC=SNP
+20	538230	rs7267458	C	T	.	.	VC=SNP
+20	538235	rs454179	C	T	.	.	VC=SNP
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+20	538472	rs11905188	A	G	.	.	VC=SNP
+20	538829	rs4815752	C	T	.	.	VC=SNP
+20	538974	rs61710780	C	G	.	.	VC=SNP
+20	539018	rs397883	A	C	.	.	VC=SNP
+20	539123	rs511353	C	G	.	.	VC=SNP
+20	539359	rs7272531	A	G	.	.	VC=SNP
+20	539363	rs204679	A	G	.	.	VC=SNP
+20	539572	rs6076750	A	G	.	.	VC=SNP
+20	539650	rs204680	G	T	.	.	VC=SNP
+20	539833	rs204681	A	C	.	.	VC=SNP
+20	539878	rs119432	A	G	.	.	VC=SNP
+20	539926	rs1022111	A	C	.	.	VC=SNP
+20	540367	rs60883284	C	T	.	.	VC=SNP
+20	540707	rs13037309	A	C	.	.	VC=SNP
+20	540729	rs204683	A	G	.	.	VC=SNP
+20	540747	rs204684	C	T	.	.	VC=SNP
+20	540987	rs62190008	C	T	.	.	VC=SNP
+20	541262	rs204685	G	T	.	.	VC=SNP
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+20	541589	rs2006782	A	C	.	.	VC=SNP
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+20	541855	rs204687	A	G	.	.	VC=SNP
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+20	542322	rs60446103	G	T	.	.	VC=SNP
+20	542382	rs7273745	A	G	.	.	VC=SNP
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+20	542863	rs204690	A	G	.	.	VC=SNP
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+20	544015	rs205892	C	G	.	.	VC=SNP
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+20	546189	rs459577	A	T	.	.	VC=SNP
+20	546303	rs56025041	C	T	.	.	VC=SNP
+20	546546	rs204700	A	G	.	.	VC=SNP
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+20	547540	rs6116591	A	G	.	.	VC=SNP
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+20	548059	rs17691788	A	G	.	.	VC=SNP
+20	548187	rs16990573	C	T	.	.	VC=SNP
+20	548930	rs6076760	C	G	.	.	VC=SNP
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+20	550187	rs35156944	C	T	.	.	VC=SNP
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+20	550788	rs4362630	G	T	.	.	VC=SNP
+20	550815	rs2665782	G	T	.	.	VC=SNP
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+20	550871	rs28477856	C	T	.	.	VC=SNP
+20	550887	rs176057	C	T	.	.	VC=SNP
+20	551034	rs4389387	C	T	.	.	VC=SNP
+20	551396	rs6053023	A	C	.	.	VC=SNP
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+20	555484	rs13045660	A	G	.	.	VC=SNP
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+20	555624	rs56400707	C	T	.	.	VC=SNP
+20	555652	rs4569543	A	G	.	.	VC=SNP
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+20	558212	rs59831885	A	G	.	.	VC=SNP
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+20	563781	rs12624876	A	C	.	.	VC=SNP
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+20	572165	rs6053194	C	G	.	.	VC=SNP
+20	572332	rs6085028	A	C	.	.	VC=SNP
+20	572361	rs12480822	C	T	.	.	VC=SNP
+20	572608	rs62190035	A	G	.	.	VC=SNP
+20	572872	rs2316900	C	G	.	.	VC=SNP
+20	573036	rs2016981	A	G	.	.	VC=SNP
+20	573741	rs4993280	C	T	.	.	VC=SNP
+20	573763	rs2017228	A	T	.	.	VC=SNP
+20	573765	rs1018544	A	T	.	.	VC=SNP
+20	573783	rs6053203	A	G	.	.	VC=SNP
+20	574035	rs62190036	A	C	.	.	VC=SNP
+20	574282	rs6139651	A	G	.	.	VC=SNP
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+20	574470	rs62190037	C	G	.	.	VC=SNP
+20	574714	rs60121509	A	T	.	.	VC=SNP
+20	574715	rs6139656	A	T	.	.	VC=SNP
+20	574824	rs6076790	A	G	.	.	VC=SNP
+20	575014	rs35423523	A	C	.	.	VC=SNP
+20	575034	rs58010805	A	G	.	.	VC=SNP
+20	575055	rs6139660	C	G	.	.	VC=SNP
+20	575063	rs6053210	C	T	.	.	VC=SNP
+20	575236	rs11696160	C	T	.	.	VC=SNP
+20	575640	rs28667694	A	G	.	.	VC=SNP
+20	576014	rs9753577	C	G	.	.	VC=SNP
+20	576039	rs4813733	A	C	.	.	VC=SNP
+20	577088	rs35950827	A	G	.	.	VC=SNP
+20	577114	rs62190038	A	G	.	.	VC=SNP
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+20	577322	rs6116711	A	G	.	.	VC=SNP
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+20	577856	rs13042966	A	G	.	.	VC=SNP
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+20	578479	rs59248349	A	G	.	.	VC=SNP
+20	578600	rs60514002	C	T	.	.	VC=SNP
+20	578830	rs56975658	A	G	.	.	VC=SNP
+20	578907	rs6139678	A	C	.	.	VC=SNP
+20	579092	rs6107607	C	T	.	.	VC=SNP
+20	579278	rs282151	A	G	.	.	VC=SNP
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+20	579803	rs9680067	G	T	.	.	VC=SNP
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+20	580398	rs11700261	C	T	.	.	VC=SNP
+20	580434	rs59511759	C	T	.	.	VC=SNP
+20	580437	rs11700273	C	G	.	.	VC=SNP
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+20	581635	rs62190045	A	C	.	.	VC=SNP
+20	581636	rs58230473	A	G	.	.	VC=SNP
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+20	582993	rs45617732	A	G	.	.	VC=SNP
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+20	583109	rs45554233	A	C	.	.	VC=SNP
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+20	583677	rs45580731	C	G	.	.	VC=SNP
+20	583693	rs45461892	C	T	.	.	VC=SNP
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+20	587162	rs11905901	A	T	.	.	VC=SNP
+20	587411	rs11906995	A	G	.	.	VC=SNP
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+20	587996	rs6053340	C	T	.	.	VC=SNP
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+20	588166	rs7270847	A	G	.	.	VC=SNP
+20	588277	rs45565235	A	G	.	.	VC=SNP
+20	588326	rs6116763	C	T	.	.	VC=SNP
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+20	588432	rs41389344	G	T	.	.	VC=SNP
+20	588434	rs45509897	G	T	.	.	VC=SNP
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+20	588906	rs45524237	C	G	.	.	VC=SNP
+20	589184	rs45471200	A	G	.	.	VC=SNP
+20	589221	rs45616234	A	G	.	.	VC=SNP
+20	589226	rs45451604	A	G	.	.	VC=SNP
+20	589232	rs45512702	C	T	.	.	VC=SNP
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+20	589538	rs6139705	A	G	.	.	VC=SNP
+20	589633	rs13040630	A	G	.	.	VC=SNP
+20	589691	rs45601331	C	G	.	.	VC=SNP
+20	589722	rs45445291	A	C	.	.	VC=SNP
+20	589746	rs45527544	C	T	.	.	VC=SNP
+20	589794	rs45597132	A	G	.	.	VC=SNP
+20	589818	rs45459001	C	T	.	.	VC=SNP
+20	589871	rs45565840	C	T	.	.	VC=SNP
+20	590007	rs45543231	A	C	.	.	VC=SNP
+20	590120	rs45540535	A	G	.	.	VC=SNP
+20	590456	rs282164	C	T	.	.	VC=SNP
+20	590542	rs2754502	C	G	.	.	VC=SNP
+20	590543	rs2665781	C	G	.	.	VC=SNP
+20	590723	rs188157	G	T	.	.	VC=SNP
+20	590855	rs45526442	C	T	.	.	VC=SNP
+20	590900	rs183989	A	G	.	.	VC=SNP
+20	591100	rs45437895	G	T	.	.	VC=SNP
+20	591286	rs45467591	A	G	.	.	VC=SNP
+20	591402	rs41379048	A	C	.	.	VC=SNP
+20	591492	rs41537049	G	T	.	.	VC=SNP
+20	591610	rs11697874	A	G	.	.	VC=SNP
+20	591694	rs3761308	C	T	.	.	VC=SNP
+20	591769	rs3761309	A	C	.	.	VC=SNP
+20	591820	rs12624577	C	T	.	.	VC=SNP
+20	591886	rs45500295	A	G	.	.	VC=SNP
+20	592038	rs282165	A	G	.	.	VC=SNP
+20	592120	rs45551534	C	T	.	.	VC=SNP
+20	592470	rs282166	C	T	.	.	VC=SNP
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+20	592801	rs282168	A	C	.	.	VC=SNP
+20	593076	rs282169	A	G	.	.	VC=SNP
+20	593308	rs6139718	C	T	.	.	VC=SNP
+20	593318	rs6053376	A	G	.	.	VC=SNP
+20	593488	rs11696415	C	T	.	.	VC=SNP
+20	593620	rs10211716	A	G	.	.	VC=SNP
+20	593641	rs282170	C	T	.	.	VC=SNP
+20	593661	rs4815810	A	G	.	.	VC=SNP
+20	594780	rs1533087	A	G	.	.	VC=SNP
+20	594819	rs12479980	A	C	.	.	VC=SNP
+20	594975	rs6053387	A	G	.	.	VC=SNP
+20	595052	rs55869847	C	T	.	.	VC=SNP
+20	595119	rs1969190	G	T	.	.	VC=SNP
+20	595121	rs61498938	A	C	.	.	VC=SNP
+20	595126	rs7509301	C	T	.	.	VC=SNP
+20	595128	rs7509302	C	T	.	.	VC=SNP
+20	595130	rs7509304	C	T	.	.	VC=SNP
+20	595132	rs60810088	C	T	.	.	VC=SNP
+20	595136	rs2316867	C	T	.	.	VC=SNP
+20	595138	rs2316868	C	T	.	.	VC=SNP
+20	595141	rs7509194	A	G	.	.	VC=SNP
+20	595149	rs6053388	A	G	.	.	VC=SNP
+20	595151	rs6038164	A	G	.	.	VC=SNP
+20	595153	rs7509196	A	G	.	.	VC=SNP
+20	595159	rs6038165	A	G	.	.	VC=SNP
+20	595199	rs204459	A	T	.	.	VC=SNP
+20	595262	rs6053390	C	T	.	.	VC=SNP
+20	595354	rs55889729	A	G	.	.	VC=SNP
+20	595425	rs16991081	G	T	.	.	VC=SNP
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+20	595579	rs4813749	C	G	.	.	VC=SNP
+20	595689	rs12481654	C	G	.	.	VC=SNP
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+20	595809	rs6053400	C	T	.	.	VC=SNP
+20	595965	rs62190057	C	T	.	.	VC=SNP
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+20	596099	rs1977221	C	G	.	.	VC=SNP
+20	596115	rs282155	G	T	.	.	VC=SNP
+20	596446	rs12479677	C	G	.	.	VC=SNP
+20	597013	rs28613562	G	T	.	.	VC=SNP
+20	597203	rs4257446	G	T	.	.	VC=SNP
+20	597387	rs55778346	A	C	.	.	VC=SNP
+20	597666	rs59036274	A	T	.	.	VC=SNP
+20	597708	rs34851019	C	T	.	.	VC=SNP
+20	597738	rs282156	C	G	.	.	VC=SNP
+20	598071	rs58681954	A	G	.	.	VC=SNP
+20	598195	rs6116796	A	T	.	.	VC=SNP
+20	598278	rs10485820	C	T	.	.	VC=SNP
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+20	598642	rs282158	A	G	.	.	VC=SNP
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+20	599211	rs59900905	A	G	.	.	VC=SNP
+20	599240	rs6085167	G	T	.	.	VC=SNP
+20	599339	rs34887022	A	G	.	.	VC=SNP
+20	599797	rs6116800	A	G	.	.	VC=SNP
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+20	600499	rs55811991	A	C	.	.	VC=SNP
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+20	600990	rs63283561	G	T	.	.	VC=SNP
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+20	601223	rs34536900	C	T	.	.	VC=SNP
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+20	603259	rs35721875	A	C	.	.	VC=SNP
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+20	604975	rs11698331	A	G	.	.	VC=SNP
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+20	605385	rs7352349	G	T	.	.	VC=SNP
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+20	605889	rs4815836	C	T	.	.	VC=SNP
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+20	607085	rs11699898	A	G	.	.	VC=SNP
+20	607594	rs12480156	C	T	.	.	VC=SNP
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+20	607753	rs7268035	A	T	.	.	VC=SNP
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+20	609341	rs12479886	A	G	.	.	VC=SNP
+20	609342	rs34264467	C	G	.	.	VC=SNP
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+20	610792	rs6038212	C	T	.	.	VC=SNP
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+20	611098	rs62190058	A	G	.	.	VC=SNP
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+20	615663	rs59511335	A	G	.	.	VC=SNP
+20	616632	rs8115773	A	T	.	.	VC=SNP
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+20	628742	rs41282132	A	G	.	.	VC=SNP
+20	628768	rs6053664	C	T	.	.	VC=SNP
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+20	628890	rs6053666	C	T	.	.	VC=SNP
+20	628921	rs57874784	A	G	.	.	VC=SNP
+20	628958	rs62192060	C	T	.	.	VC=SNP
+20	629213	rs3746799	C	T	.	.	VC=SNP
+20	629290	rs45538041	C	T	.	.	VC=SNP
+20	629649	rs41282134	A	T	.	.	VC=SNP
+20	629826	rs7508957	C	T	.	.	VC=SNP
+20	629951	rs6038273	C	T	.	.	VC=SNP
+20	630300	rs56294495	C	T	.	.	VC=SNP
+20	630360	rs6038277	A	G	.	.	VC=SNP
+20	630552	rs6053682	A	G	.	.	VC=SNP
+20	630627	rs6053685	C	T	.	.	VC=SNP
+20	630885	rs7268200	A	G	.	.	VC=SNP
+20	630898	rs6116952	A	G	.	.	VC=SNP
+20	630970	rs6107696	A	G	.	.	VC=SNP
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+20	631117	rs7269823	A	G	.	.	VC=SNP
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+20	632630	rs58508378	A	G	.	.	VC=SNP
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+20	650750	rs13041959	C	T	.	.	VC=SNP
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+20	651640	rs4815881	A	G	.	.	VC=SNP
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+20	654633	rs12480697	G	T	.	.	VC=SNP
+20	655043	rs57039763	A	T	.	.	VC=SNP
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+20	657760	rs12106058	C	G	.	.	VC=SNP
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+20	658122	rs11906176	A	G	.	.	VC=SNP
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+20	658874	rs7262175	C	T	.	.	VC=SNP
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+20	658949	rs7272125	C	T	.	.	VC=SNP
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+20	659077	rs11699912	C	G	.	.	VC=SNP
+20	659198	rs6038343	C	T	.	.	VC=SNP
+20	659286	rs7352947	A	G	.	.	VC=SNP
+20	659313	rs57650823	G	T	.	.	VC=SNP
+20	659322	rs11087713	A	G	.	.	VC=SNP
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+20	659441	rs12106143	A	G	.	.	VC=SNP
+20	659452	rs6038345	C	T	.	.	VC=SNP
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+20	660126	rs4813788	G	T	.	.	VC=SNP
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+20	660618	rs60009045	A	G	.	.	VC=SNP
+20	660653	rs7272428	A	T	.	.	VC=SNP
+20	660673	rs13038514	A	G	.	.	VC=SNP
+20	660793	rs6085394	A	G	.	.	VC=SNP
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+20	662136	rs13038942	A	C	.	.	VC=SNP
+20	662364	rs59696770	A	G	.	.	VC=SNP
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+20	662673	rs13044610	C	T	.	.	VC=SNP
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+20	663107	rs6516105	C	G	.	.	VC=SNP
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+20	664130	rs6085412	C	T	.	.	VC=SNP
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+20	664231	rs6117085	C	T	.	.	VC=SNP
+20	664517	rs12481215	G	T	.	.	VC=SNP
+20	664848	rs35143981	A	G	.	.	VC=SNP
+20	665319	rs10432738	C	T	.	.	VC=SNP
+20	665377	rs6107763	C	T	.	.	VC=SNP
+20	665378	rs4813791	A	G	.	.	VC=SNP
+20	665551	rs4815889	A	G	.	.	VC=SNP
+20	665598	rs6133294	A	C	.	.	VC=SNP
+20	665733	rs11087719	A	G	.	.	VC=SNP
+20	666183	rs6117094	C	T	.	.	VC=SNP
+20	666289	rs6085416	A	G	.	.	VC=SNP
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+20	666950	rs60377867	A	G	.	.	VC=SNP
+20	666953	rs61614096	A	G	.	.	VC=SNP
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+20	667173	rs59277134	A	G	.	.	VC=SNP
+20	667237	rs59336584	A	G	.	.	VC=SNP
+20	667281	rs6117099	A	G	.	.	VC=SNP
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+20	667979	rs7274288	A	T	.	.	VC=SNP
+20	668024	rs34686480	C	T	.	.	VC=SNP
+20	668361	rs1001107	A	G	.	.	VC=SNP
+20	668559	rs1535235	C	T	.	.	VC=SNP
+20	668646	rs1535236	C	G	.	.	VC=SNP
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+20	669301	rs13044967	A	G	.	.	VC=SNP
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+20	670257	rs1884760	C	T	.	.	VC=SNP
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+20	670749	rs4141735	A	G	.	.	VC=SNP
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+20	672152	rs55925121	A	G	.	.	VC=SNP
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+20	674107	rs2145098	A	G	.	.	VC=SNP
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+20	675130	rs35976122	C	G	.	.	VC=SNP
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+20	694944	rs1114735	C	T	.	.	VC=SNP
+20	694959	rs6085553	A	G	.	.	VC=SNP
+20	695019	rs1114736	C	T	.	.	VC=SNP
+20	695060	rs6085554	A	G	.	.	VC=SNP
+20	695460	rs6085556	A	G	.	.	VC=SNP
+20	695670	rs8121910	C	T	.	.	VC=SNP
+20	696203	rs2422515	A	C	.	.	VC=SNP
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+20	696469	rs6038499	A	G	.	.	VC=SNP
+20	696480	rs2422517	A	C	.	.	VC=SNP
+20	696481	rs6085558	G	T	.	.	VC=SNP
+20	696834	rs6038500	C	T	.	.	VC=SNP
+20	697600	rs6054280	C	T	.	.	VC=SNP
+20	697916	rs6117266	A	G	.	.	VC=SNP
+20	697949	rs11698782	A	C	.	.	VC=SNP
+20	698576	rs34742688	C	G	.	.	VC=SNP
+20	698760	rs11906141	A	G	.	.	VC=SNP
+20	698762	rs11908463	A	T	.	.	VC=SNP
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+20	699018	rs57324177	C	G	.	.	VC=SNP
+20	699035	rs6117280	C	G	.	.	VC=SNP
+20	699382	rs8114660	A	G	.	.	VC=SNP
+20	699464	rs6077009	A	T	.	.	VC=SNP
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+20	699918	rs56323034	C	T	.	.	VC=SNP
+20	700108	rs6117288	C	G	.	.	VC=SNP
+20	700176	rs55771173	C	T	.	.	VC=SNP
+20	701011	rs6077013	C	G	.	.	VC=SNP
+20	701145	rs6077014	A	G	.	.	VC=SNP
+20	701321	rs6054310	C	G	.	.	VC=SNP
+20	701512	rs4061071	C	G	.	.	VC=SNP
+20	701597	rs750159	A	G	.	.	VC=SNP
+20	701631	rs750160	C	T	.	.	VC=SNP
+20	701959	rs56050507	A	T	.	.	VC=SNP
+20	702030	rs34986854	A	G	.	.	VC=SNP
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+20	702087	rs60231810	C	T	.	.	VC=SNP
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+20	702570	rs6085580	C	T	.	.	VC=SNP
+20	702736	rs11905469	A	G	.	.	VC=SNP
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+20	702847	rs11908241	C	T	.	.	VC=SNP
+20	702848	rs60036278	A	G	.	.	VC=SNP
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+20	703056	rs56354341	G	T	.	.	VC=SNP
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+20	703778	rs60845367	C	T	.	.	VC=SNP
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+20	704209	rs13042979	G	T	.	.	VC=SNP
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+20	704559	rs55885386	A	G	.	.	VC=SNP
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+20	705121	rs57769933	C	G	.	.	VC=SNP
+20	705161	rs7262891	A	G	.	.	VC=SNP
+20	705370	rs7269010	A	G	.	.	VC=SNP
+20	705638	rs13039451	G	T	.	.	VC=SNP
+20	706407	rs6054335	G	T	.	.	VC=SNP
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+20	706705	rs6140024	C	T	.	.	VC=SNP
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+20	707712	rs6140027	A	G	.	.	VC=SNP
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+20	708104	rs13044082	G	T	.	.	VC=SNP
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+20	708611	rs11904883	A	G	.	.	VC=SNP
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+20	709037	rs11905322	G	T	.	.	VC=SNP
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+20	710311	rs6038547	C	T	.	.	VC=SNP
+20	710395	rs6107838	C	T	.	.	VC=SNP
+20	710537	rs6117349	C	T	.	.	VC=SNP
+20	710834	rs61489106	C	T	.	.	VC=SNP
+20	711588	rs6038549	A	G	.	.	VC=SNP
+20	712050	rs6140037	C	T	.	.	VC=SNP
+20	712185	rs6054380	C	T	.	.	VC=SNP
+20	712664	rs6085623	C	G	.	.	VC=SNP
+20	712802	rs55781505	C	T	.	.	VC=SNP
+20	712907	rs62192122	A	T	.	.	VC=SNP
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+20	713430	rs11907382	C	T	.	.	VC=SNP
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+20	713849	rs6140042	C	T	.	.	VC=SNP
+20	713902	rs6054397	C	G	.	.	VC=SNP
+20	714008	rs2317021	A	G	.	.	VC=SNP
+20	714261	rs975449	A	G	.	.	VC=SNP
+20	714316	rs2093013	C	G	.	.	VC=SNP
+20	714445	rs6054402	C	G	.	.	VC=SNP
+20	714462	rs927067	A	G	.	.	VC=SNP
+20	714547	rs6140045	C	T	.	.	VC=SNP
+20	714571	rs12624534	G	T	.	.	VC=SNP
+20	714613	rs6140046	C	G	.	.	VC=SNP
+20	714970	rs13036852	C	T	.	.	VC=SNP
+20	714988	rs13036858	C	T	.	.	VC=SNP
+20	715002	rs13040805	C	T	.	.	VC=SNP
+20	715027	rs6140047	A	G	.	.	VC=SNP
+20	715175	rs6133337	G	T	.	.	VC=SNP
+20	715294	rs1040739	A	G	.	.	VC=SNP
+20	715471	rs7354589	C	T	.	.	VC=SNP
+20	715568	rs6085634	A	G	.	.	VC=SNP
+20	715571	rs2016390	A	G	.	.	VC=SNP
+20	716199	rs2317022	A	G	.	.	VC=SNP
+20	716233	rs2873339	A	G	.	.	VC=SNP
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+20	717044	rs6085641	A	C	.	.	VC=SNP
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+20	717115	rs7268066	A	G	.	.	VC=SNP
+20	717234	rs7268129	A	G	.	.	VC=SNP
+20	717398	rs62192123	A	T	.	.	VC=SNP
+20	717428	rs6133341	A	G	.	.	VC=SNP
+20	717457	rs6077043	C	G	.	.	VC=SNP
+20	717522	rs8115370	A	G	.	.	VC=SNP
+20	717569	rs6117372	A	G	.	.	VC=SNP
+20	717649	rs6117373	C	T	.	.	VC=SNP
+20	717818	rs6117374	C	T	.	.	VC=SNP
+20	717920	rs6140053	C	T	.	.	VC=SNP
+20	718333	rs6140054	A	G	.	.	VC=SNP
+20	718409	rs6140055	C	T	.	.	VC=SNP
+20	718542	rs11697300	A	G	.	.	VC=SNP
+20	718703	rs6085645	C	T	.	.	VC=SNP
+20	718735	rs6054442	A	C	.	.	VC=SNP
+20	719383	rs6107859	G	T	.	.	VC=SNP
+20	719740	rs2317023	C	T	.	.	VC=SNP
+20	719854	rs1884639	C	T	.	.	VC=SNP
+20	719883	rs1884640	C	G	.	.	VC=SNP
+20	720218	rs55719633	G	T	.	.	VC=SNP
+20	720243	rs60957781	C	T	.	.	VC=SNP
+20	720512	rs59488666	A	G	.	.	VC=SNP
+20	720518	rs56839494	A	G	.	.	VC=SNP
+20	720604	rs4387876	G	T	.	.	VC=SNP
+20	720682	rs4263183	A	G	.	.	VC=SNP
+20	720902	rs4577350	C	T	.	.	VC=SNP
+20	720916	rs2144930	A	G	.	.	VC=SNP
+20	721018	rs9789826	A	G	.	.	VC=SNP
+20	721020	rs4386392	A	G	.	.	VC=SNP
+20	721111	rs6085653	A	G	.	.	VC=SNP
+20	721121	rs4572665	C	T	.	.	VC=SNP
+20	721122	rs9789828	A	G	.	.	VC=SNP
+20	721162	rs9789781	C	T	.	.	VC=SNP
+20	721340	rs9789832	A	G	.	.	VC=SNP
+20	721357	rs9789833	A	G	.	.	VC=SNP
+20	721797	rs6133343	G	T	.	.	VC=SNP
+20	721928	rs17562054	C	G	.	.	VC=SNP
+20	722026	rs11906581	A	G	.	.	VC=SNP
+20	722097	rs56208397	A	G	.	.	VC=SNP
+20	722411	rs34135709	C	T	.	.	VC=SNP
+20	722481	rs56815619	C	T	.	.	VC=SNP
+20	722485	rs6038592	C	T	.	.	VC=SNP
+20	722489	rs58674686	C	T	.	.	VC=SNP
+20	722583	rs6140067	A	T	.	.	VC=SNP
+20	722980	rs4577351	A	T	.	.	VC=SNP
+20	723060	rs16992625	C	T	.	.	VC=SNP
+20	723155	rs1074257	A	G	.	.	VC=SNP
+20	723222	rs6038593	A	G	.	.	VC=SNP
+20	723278	rs4568020	A	G	.	.	VC=SNP
+20	723301	rs62192124	G	T	.	.	VC=SNP
+20	723609	rs11696228	C	T	.	.	VC=SNP
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+20	723808	rs11697693	A	T	.	.	VC=SNP
+20	724371	rs6117398	C	T	.	.	VC=SNP
+20	724578	rs11907768	A	G	.	.	VC=SNP
+20	725128	rs6054495	C	T	.	.	VC=SNP
+20	725200	rs6140073	A	C	.	.	VC=SNP
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+20	725991	rs6107866	G	T	.	.	VC=SNP
+20	726286	rs6077055	A	C	.	.	VC=SNP
+20	727151	rs13036958	A	C	.	.	VC=SNP
+20	727227	rs6140077	C	T	.	.	VC=SNP
+20	727236	rs28463120	G	T	.	.	VC=SNP
+20	727331	rs6085673	A	G	.	.	VC=SNP
+20	727476	rs60461885	C	T	.	.	VC=SNP
+20	727581	rs6140078	A	G	.	.	VC=SNP
+20	727627	rs6085674	C	T	.	.	VC=SNP
+20	727724	rs6038604	C	T	.	.	VC=SNP
+20	727893	rs6140079	C	T	.	.	VC=SNP
+20	728025	rs6516199	A	T	.	.	VC=SNP
+20	728308	rs6140081	A	G	.	.	VC=SNP
+20	728499	rs6054508	A	C	.	.	VC=SNP
+20	728642	rs8118107	A	G	.	.	VC=SNP
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+20	728856	rs8118216	C	G	.	.	VC=SNP
+20	728910	rs28817387	A	G	.	.	VC=SNP
+20	728911	rs28805987	A	G	.	.	VC=SNP
+20	729075	rs56194108	C	T	.	.	VC=SNP
+20	729200	rs34215002	A	G	.	.	VC=SNP
+20	729420	rs4813804	A	G	.	.	VC=SNP
+20	729705	rs6140084	C	T	.	.	VC=SNP
+20	729893	rs13041411	C	T	.	.	VC=SNP
+20	729979	rs34879275	A	G	.	.	VC=SNP
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+20	730289	rs7269034	C	T	.	.	VC=SNP
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+20	730519	rs7273321	A	G	.	.	VC=SNP
+20	730642	rs28765220	A	T	.	.	VC=SNP
+20	730643	rs28750738	A	T	.	.	VC=SNP
+20	730893	rs57596504	C	T	.	.	VC=SNP
+20	731005	rs13039346	A	G	.	.	VC=SNP
+20	731190	rs6133356	G	T	.	.	VC=SNP
+20	731211	rs4815939	A	C	.	.	VC=SNP
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+20	731744	rs6140090	A	G	.	.	VC=SNP
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+20	731976	rs8184001	A	G	.	.	VC=SNP
+20	732138	rs6117439	A	T	.	.	VC=SNP
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+20	732164	rs62190479	A	T	.	.	VC=SNP
+20	732236	rs8183784	C	G	.	.	VC=SNP
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+20	732767	rs6516204	C	G	.	.	VC=SNP
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+20	733441	rs59123704	C	T	.	.	VC=SNP
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+20	735197	rs56002734	A	G	.	.	VC=SNP
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+20	742252	rs13339933	A	G	.	.	VC=SNP
+20	742631	rs873970	C	T	.	.	VC=SNP
+20	742716	rs16992934	A	C	.	.	VC=SNP
+20	742752	rs6085719	A	C	.	.	VC=SNP
+20	742831	rs6054593	G	T	.	.	VC=SNP
+20	742874	rs6117507	C	T	.	.	VC=SNP
+20	742892	rs6038641	C	T	.	.	VC=SNP
+20	742931	rs6117508	C	T	.	.	VC=SNP
+20	743018	rs6038642	G	T	.	.	VC=SNP
+20	743124	rs13039544	C	G	.	.	VC=SNP
+20	743130	rs6038643	C	T	.	.	VC=SNP
+20	743220	rs2317024	C	T	.	.	VC=SNP
+20	743272	rs2317025	C	T	.	.	VC=SNP
+20	743453	rs6140112	A	G	.	.	VC=SNP
+20	743578	rs6085723	A	C	.	.	VC=SNP
+20	743770	rs6140113	C	T	.	.	VC=SNP
+20	743827	rs910858	A	G	.	.	VC=SNP
+20	744032	rs8122333	A	T	.	.	VC=SNP
+20	744050	rs8122335	A	G	.	.	VC=SNP
+20	744234	rs62641669	C	G	.	.	VC=SNP
+20	744279	rs6054602	C	T	.	.	VC=SNP
+20	744308	rs3746802	C	T	.	.	VC=SNP
+20	744382	rs3746803	A	G	.	.	VC=SNP
+20	744415	rs3746804	A	G	.	.	VC=SNP
+20	744450	rs3746805	A	G	.	.	VC=SNP
+20	744510	rs3746806	A	G	.	.	VC=SNP
+20	744570	rs6054605	A	G	.	.	VC=SNP
+20	744615	rs16992990	A	G	.	.	VC=SNP
+20	744682	rs62190484	A	G	.	.	VC=SNP
+20	744847	rs6133374	A	G	.	.	VC=SNP
+20	744874	rs6140117	A	G	.	.	VC=SNP
+20	745181	rs6077095	A	T	.	.	VC=SNP
+20	745189	rs62190485	C	T	.	.	VC=SNP
+20	745210	rs6085737	A	G	.	.	VC=SNP
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+20	745444	rs6085741	A	C	.	.	VC=SNP
+20	745547	rs6140125	A	C	.	.	VC=SNP
+20	745683	rs6117513	C	T	.	.	VC=SNP
+20	745898	rs6054614	C	T	.	.	VC=SNP
+20	745963	rs3746807	A	G	.	.	VC=SNP
+20	746098	rs3746808	A	G	.	.	VC=SNP
+20	746179	rs34376836	C	T	.	.	VC=SNP
+20	746197	rs35655964	C	G	.	.	VC=SNP
+20	746459	rs6117517	C	T	.	.	VC=SNP
+20	746860	rs2024894	G	T	.	.	VC=SNP
+20	746885	rs2024895	G	T	.	.	VC=SNP
+20	746952	rs2024896	A	G	.	.	VC=SNP
+20	747023	rs34571785	C	T	.	.	VC=SNP
+20	747156	rs2180464	A	C	.	.	VC=SNP
+20	747157	rs6117523	A	G	.	.	VC=SNP
+20	747197	rs6085769	C	T	.	.	VC=SNP
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+20	747233	rs6085771	A	G	.	.	VC=SNP
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+20	747431	rs6107897	C	T	.	.	VC=SNP
+20	747667	rs55689839	A	G	.	.	VC=SNP
+20	747705	rs6038666	C	T	.	.	VC=SNP
+20	747707	rs6054626	A	G	.	.	VC=SNP
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+20	747993	rs6085776	C	T	.	.	VC=SNP
+20	748020	rs12480298	A	T	.	.	VC=SNP
+20	748093	rs35063000	A	G	.	.	VC=SNP
+20	748216	rs13042112	G	T	.	.	VC=SNP
+20	748336	rs35972493	C	T	.	.	VC=SNP
+20	748610	rs12480365	C	T	.	.	VC=SNP
+20	748674	rs60387645	C	G	.	.	VC=SNP
+20	748823	rs7270519	A	G	.	.	VC=SNP
+20	748911	rs1884636	A	G	.	.	VC=SNP
+20	748972	rs57012410	A	G	.	.	VC=SNP
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+20	749381	rs8123900	G	T	.	.	VC=SNP
+20	750059	rs35534336	C	G	.	.	VC=SNP
+20	750204	rs16993064	A	G	.	.	VC=SNP
+20	750295	rs6133379	C	G	.	.	VC=SNP
+20	750316	rs56138654	A	G	.	.	VC=SNP
+20	750423	rs34031615	C	T	.	.	VC=SNP
+20	750497	rs59365589	A	T	.	.	VC=SNP
+20	750499	rs58279463	A	C	.	.	VC=SNP
+20	750505	rs57651639	C	T	.	.	VC=SNP
+20	750738	rs6117544	A	G	.	.	VC=SNP
+20	751187	rs6117550	A	T	.	.	VC=SNP
+20	751578	rs60888552	C	T	.	.	VC=SNP
+20	751623	rs6117553	A	G	.	.	VC=SNP
+20	751671	rs55979979	A	T	.	.	VC=SNP
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+20	752132	rs6140144	A	G	.	.	VC=SNP
+20	752236	rs34948088	A	C	.	.	VC=SNP
+20	752368	rs539934	A	G	.	.	VC=SNP
+20	752633	rs4815961	G	T	.	.	VC=SNP
+20	752876	rs17774132	A	G	.	.	VC=SNP
+20	752908	rs57583221	A	G	.	.	VC=SNP
+20	752963	rs6140149	A	G	.	.	VC=SNP
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+20	753243	rs6054669	G	T	.	.	VC=SNP
+20	753280	rs6140151	C	T	.	.	VC=SNP
+20	753310	rs6117562	A	G	.	.	VC=SNP
+20	753363	rs570153	G	T	.	.	VC=SNP
+20	753468	rs657499	A	C	.	.	VC=SNP
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+20	753516	rs571847	A	G	.	.	VC=SNP
+20	753739	rs668988	A	G	.	.	VC=SNP
+20	753917	rs6054678	C	T	.	.	VC=SNP
+20	754367	rs671641	C	G	.	.	VC=SNP
+20	754381	rs6054685	A	G	.	.	VC=SNP
+20	754511	rs13042395	C	T	.	.	VC=SNP
+20	754604	rs34221790	A	G	.	.	VC=SNP
+20	754685	rs6054688	C	G	.	.	VC=SNP
+20	755027	rs16993103	C	T	.	.	VC=SNP
+20	755171	rs497494	C	T	.	.	VC=SNP
+20	755253	rs58713032	A	G	.	.	VC=SNP
+20	755253	rs13045384	A	G	.	.	VC=SNP
+20	756074	rs592249	A	G	.	.	VC=SNP
+20	756106	rs527448	C	T	.	.	VC=SNP
+20	756177	rs527655	C	T	.	.	VC=SNP
+20	756182	rs527659	A	G	.	.	VC=SNP
+20	756519	rs552232	A	G	.	.	VC=SNP
+20	756531	rs6140159	A	G	.	.	VC=SNP
+20	756982	rs61305737	A	T	.	.	VC=SNP
+20	756982	rs1884638	A	T	.	.	VC=SNP
+20	757491	rs35656450	A	G	.	.	VC=SNP
+20	757498	rs805846	C	T	.	.	VC=SNP
+20	757860	rs59900283	C	T	.	.	VC=SNP
+20	757920	rs13038126	A	C	.	.	VC=SNP
+20	757986	rs11699533	A	G	.	.	VC=SNP
+20	758034	rs6085854	C	T	.	.	VC=SNP
+20	758132	rs12625618	C	T	.	.	VC=SNP
+20	758718	rs6140168	C	T	.	.	VC=SNP
+20	758757	rs6085857	A	C	.	.	VC=SNP
+20	758982	rs636042	C	G	.	.	VC=SNP
+20	759254	rs6133394	C	G	.	.	VC=SNP
+20	759315	rs6117615	A	G	.	.	VC=SNP
+20	759392	rs62190504	C	T	.	.	VC=SNP
+20	759523	rs566374	A	G	.	.	VC=SNP
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+20	759851	rs650358	C	T	.	.	VC=SNP
+20	760447	rs56396339	C	T	.	.	VC=SNP
+20	760482	rs6117619	G	T	.	.	VC=SNP
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+20	760625	rs6140172	A	G	.	.	VC=SNP
+20	760760	rs6085864	A	C	.	.	VC=SNP
+20	760792	rs6117622	A	C	.	.	VC=SNP
+20	760863	rs6140175	A	G	.	.	VC=SNP
+20	761007	rs6038707	C	T	.	.	VC=SNP
+20	761072	rs6085865	A	G	.	.	VC=SNP
+20	761202	rs6140179	C	T	.	.	VC=SNP
+20	761404	rs6117625	A	G	.	.	VC=SNP
+20	761478	rs6117626	C	T	.	.	VC=SNP
+20	761479	rs6140181	A	G	.	.	VC=SNP
+20	761786	rs6085867	A	G	.	.	VC=SNP
+20	762126	rs6054732	C	G	.	.	VC=SNP
+20	762224	rs6054733	A	G	.	.	VC=SNP
+20	762301	rs6140182	C	T	.	.	VC=SNP
+20	762418	rs6054734	C	T	.	.	VC=SNP
+20	762555	rs6054736	C	T	.	.	VC=SNP
+20	762580	rs62190505	G	T	.	.	VC=SNP
+20	762696	rs6054737	G	T	.	.	VC=SNP
+20	762747	rs603108	A	G	.	.	VC=SNP
+20	762757	rs6107925	C	G	.	.	VC=SNP
+20	762778	rs6054739	C	T	.	.	VC=SNP
+20	762977	rs6054740	G	T	.	.	VC=SNP
+20	763195	rs6085872	A	G	.	.	VC=SNP
+20	763391	rs6085874	C	T	.	.	VC=SNP
+20	763541	rs6085876	A	G	.	.	VC=SNP
+20	763651	rs6085877	A	G	.	.	VC=SNP
+20	763831	rs6085878	A	G	.	.	VC=SNP
+20	763837	rs6085879	C	T	.	.	VC=SNP
+20	763838	rs6085880	A	G	.	.	VC=SNP
+20	763968	rs6085881	A	C	.	.	VC=SNP
+20	764067	rs6085882	C	T	.	.	VC=SNP
+20	764090	rs6085883	A	G	.	.	VC=SNP
+20	764093	rs11696592	C	T	.	.	VC=SNP
+20	764131	rs62190506	C	T	.	.	VC=SNP
+20	764163	rs6085884	C	T	.	.	VC=SNP
+20	764382	rs6085887	A	G	.	.	VC=SNP
+20	764477	rs6085889	A	G	.	.	VC=SNP
+20	764580	rs6085890	A	G	.	.	VC=SNP
+20	764757	rs499007	C	G	.	.	VC=SNP
+20	764763	rs632546	A	T	.	.	VC=SNP
+20	764795	rs6054750	A	G	.	.	VC=SNP
+20	764832	rs6085892	A	G	.	.	VC=SNP
+20	764887	rs6038717	A	G	.	.	VC=SNP
+20	764888	rs6054751	A	C	.	.	VC=SNP
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+20	764990	rs6117641	A	G	.	.	VC=SNP
+20	765039	rs6107927	C	T	.	.	VC=SNP
+20	765114	rs36012842	A	G	.	.	VC=SNP
+20	765156	rs58798214	C	T	.	.	VC=SNP
+20	765164	rs36071180	A	G	.	.	VC=SNP
+20	765329	rs4815972	G	T	.	.	VC=SNP
+20	765338	rs4815973	A	T	.	.	VC=SNP
+20	765464	rs4815974	A	G	.	.	VC=SNP
+20	765485	rs11698159	A	G	.	.	VC=SNP
+20	765679	rs6077142	C	T	.	.	VC=SNP
+20	765788	rs7264641	C	T	.	.	VC=SNP
+20	765789	rs6133397	A	G	.	.	VC=SNP
+20	765864	rs56189435	A	G	.	.	VC=SNP
+20	765937	rs4815975	A	C	.	.	VC=SNP
+20	765946	rs4815976	G	T	.	.	VC=SNP
+20	766083	rs648656	G	T	.	.	VC=SNP
+20	766224	rs649470	A	G	.	.	VC=SNP
+20	766290	rs6085895	A	G	.	.	VC=SNP
+20	766336	rs6038722	G	T	.	.	VC=SNP
+20	766421	rs6117646	A	G	.	.	VC=SNP
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+20	766594	rs6117647	C	T	.	.	VC=SNP
+20	766769	rs13037179	A	G	.	.	VC=SNP
+20	766770	rs13037183	G	T	.	.	VC=SNP
+20	767303	rs11698508	C	T	.	.	VC=SNP
+20	767461	rs6054772	A	G	.	.	VC=SNP
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+20	767720	rs676786	A	G	.	.	VC=SNP
+20	767957	rs13038895	C	T	.	.	VC=SNP
+20	768040	rs58647215	A	G	.	.	VC=SNP
+20	768205	rs59691764	C	T	.	.	VC=SNP
+20	768573	rs8125134	A	T	.	.	VC=SNP
+20	768682	rs6054780	A	G	.	.	VC=SNP
+20	769058	rs6117657	C	T	.	.	VC=SNP
+20	769074	rs546106	C	T	.	.	VC=SNP
+20	769588	rs6085912	C	T	.	.	VC=SNP
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+20	770045	rs600048	A	G	.	.	VC=SNP
+20	770099	rs6140196	C	T	.	.	VC=SNP
+20	770101	rs34579275	C	T	.	.	VC=SNP
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+20	770543	rs6133400	G	T	.	.	VC=SNP
+20	770551	rs602328	A	C	.	.	VC=SNP
+20	770638	rs6054790	A	G	.	.	VC=SNP
+20	770862	rs630435	C	T	.	.	VC=SNP
+20	770895	rs630800	A	G	.	.	VC=SNP
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+20	771045	rs62190517	A	G	.	.	VC=SNP
+20	771269	rs632170	G	T	.	.	VC=SNP
+20	771282	rs498249	C	T	.	.	VC=SNP
+20	771544	rs6140202	C	T	.	.	VC=SNP
+20	771876	rs645059	A	G	.	.	VC=SNP
+20	772282	rs6054800	C	G	.	.	VC=SNP
+20	772344	rs6117686	C	T	.	.	VC=SNP
+20	772443	rs11699633	G	T	.	.	VC=SNP
+20	772531	rs8115287	A	G	.	.	VC=SNP
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+20	772669	rs58539579	C	T	.	.	VC=SNP
+20	772805	rs56682614	C	G	.	.	VC=SNP
+20	772862	rs13039912	C	T	.	.	VC=SNP
+20	773084	rs556787	C	T	.	.	VC=SNP
+20	773197	rs35313040	A	T	.	.	VC=SNP
+20	773311	rs35337526	C	T	.	.	VC=SNP
+20	773427	rs34152576	C	T	.	.	VC=SNP
+20	773438	rs662567	C	T	.	.	VC=SNP
+20	773509	rs662934	A	G	.	.	VC=SNP
+20	773516	rs662951	C	T	.	.	VC=SNP
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+20	773538	rs34186855	A	C	.	.	VC=SNP
+20	773546	rs663007	A	G	.	.	VC=SNP
+20	773680	rs6140211	A	G	.	.	VC=SNP
+20	773989	rs7353549	C	T	.	.	VC=SNP
+20	773998	rs61133179	C	T	.	.	VC=SNP
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+20	774414	rs677305	G	T	.	.	VC=SNP
+20	774421	rs6140214	C	T	.	.	VC=SNP
+20	774677	rs56050598	A	G	.	.	VC=SNP
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+20	774964	rs59311246	C	T	.	.	VC=SNP
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+20	775014	rs6140220	C	T	.	.	VC=SNP
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+20	776077	rs597486	A	C	.	.	VC=SNP
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+20	776706	rs56012455	C	T	.	.	VC=SNP
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+20	782132	rs6107963	A	G	.	.	VC=SNP
+20	782292	rs6117753	C	T	.	.	VC=SNP
+20	782347	rs596109	A	C	.	.	VC=SNP
+20	782418	rs6117754	A	G	.	.	VC=SNP
+20	782436	rs596589	A	G	.	.	VC=SNP
+20	782450	rs556425	C	T	.	.	VC=SNP
+20	782517	rs6054900	A	G	.	.	VC=SNP
+20	782650	rs6117756	C	T	.	.	VC=SNP
+20	782667	rs12479879	C	T	.	.	VC=SNP
+20	782706	rs13043258	C	T	.	.	VC=SNP
+20	782798	rs805868	C	G	.	.	VC=SNP
+20	782974	rs609149	C	T	.	.	VC=SNP
+20	783286	rs7269775	C	T	.	.	VC=SNP
+20	783382	rs6038771	C	T	.	.	VC=SNP
+20	783551	rs12481552	A	G	.	.	VC=SNP
+20	783628	rs6054912	C	T	.	.	VC=SNP
+20	783864	rs6077185	C	T	.	.	VC=SNP
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+20	784010	rs480880	A	C	.	.	VC=SNP
+20	784062	rs6077188	C	T	.	.	VC=SNP
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+20	784166	rs11698054	C	T	.	.	VC=SNP
+20	784190	rs6054920	A	G	.	.	VC=SNP
+20	784202	rs6038775	C	T	.	.	VC=SNP
+20	784346	rs625715	C	T	.	.	VC=SNP
+20	784403	rs11906520	C	T	.	.	VC=SNP
+20	784500	rs6054922	C	T	.	.	VC=SNP
+20	784501	rs62190522	A	G	.	.	VC=SNP
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+20	784658	rs62190523	A	G	.	.	VC=SNP
+20	784730	rs11087768	A	G	.	.	VC=SNP
+20	784898	rs11087769	C	T	.	.	VC=SNP
+20	784958	rs10854267	C	G	.	.	VC=SNP
+20	785024	rs12625396	C	T	.	.	VC=SNP
+20	785087	rs12624697	A	G	.	.	VC=SNP
+20	785108	rs512236	C	T	.	.	VC=SNP
+20	785615	rs6038780	A	G	.	.	VC=SNP
+20	785898	rs6086005	C	T	.	.	VC=SNP
+20	785917	rs6086006	C	T	.	.	VC=SNP
+20	785974	rs6038782	A	G	.	.	VC=SNP
+20	785999	rs541533	A	G	.	.	VC=SNP
+20	786107	rs12481089	C	G	.	.	VC=SNP
+20	786455	rs1120554	C	T	.	.	VC=SNP
+20	786480	rs2144928	A	G	.	.	VC=SNP
+20	786703	rs1120555	A	G	.	.	VC=SNP
+20	787059	rs572635	G	T	.	.	VC=SNP
+20	787127	rs9679932	A	G	.	.	VC=SNP
+20	787341	rs2180465	A	G	.	.	VC=SNP
+20	787958	rs35700449	A	G	.	.	VC=SNP
+20	788038	rs12479451	C	T	.	.	VC=SNP
+20	788254	rs34819601	A	G	.	.	VC=SNP
+20	788330	rs6117772	C	T	.	.	VC=SNP
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+20	788713	rs4434059	A	G	.	.	VC=SNP
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+20	789128	rs62190553	A	C	.	.	VC=SNP
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+20	789483	rs62190554	A	T	.	.	VC=SNP
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+20	790035	rs605236	C	T	.	.	VC=SNP
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+20	790296	rs576702	C	T	.	.	VC=SNP
+20	790527	rs62190556	A	G	.	.	VC=SNP
+20	790581	rs6054959	A	G	.	.	VC=SNP
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+20	790651	rs59456874	A	G	.	.	VC=SNP
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+20	790726	rs634954	A	G	.	.	VC=SNP
+20	790859	rs6117785	A	G	.	.	VC=SNP
+20	791208	rs495742	A	T	.	.	VC=SNP
+20	791302	rs637589	C	T	.	.	VC=SNP
+20	791385	rs638039	G	T	.	.	VC=SNP
+20	791675	rs649387	C	T	.	.	VC=SNP
+20	791745	rs521448	A	G	.	.	VC=SNP
+20	791957	rs650759	A	C	.	.	VC=SNP
+20	792076	rs59563474	A	G	.	.	VC=SNP
+20	792182	rs525861	A	G	.	.	VC=SNP
+20	792230	rs7266858	A	G	.	.	VC=SNP
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+20	794061	rs12625615	C	G	.	.	VC=SNP
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+20	794435	rs682588	C	T	.	.	VC=SNP
+20	794506	rs500066	A	G	.	.	VC=SNP
+20	794519	rs56109180	A	G	.	.	VC=SNP
+20	794781	rs56048206	G	T	.	.	VC=SNP
+20	794793	rs56148931	G	T	.	.	VC=SNP
+20	794798	rs55661867	A	T	.	.	VC=SNP
+20	794804	rs56310710	A	T	.	.	VC=SNP
+20	795716	rs532130	A	G	.	.	VC=SNP
+20	795975	rs6055003	G	T	.	.	VC=SNP
+20	796030	rs11698649	A	T	.	.	VC=SNP
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+20	796808	rs6086045	G	T	.	.	VC=SNP
+20	796822	rs4815998	C	T	.	.	VC=SNP
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+20	797400	rs6055008	G	T	.	.	VC=SNP
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+20	797934	rs62193160	A	C	.	.	VC=SNP
+20	798333	rs56021320	G	T	.	.	VC=SNP
+20	798335	rs12625568	A	C	.	.	VC=SNP
+20	798547	rs538425	G	T	.	.	VC=SNP
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+20	798692	rs645751	A	G	.	.	VC=SNP
+20	798728	rs6140284	C	T	.	.	VC=SNP
+20	798755	rs645843	C	T	.	.	VC=SNP
+20	798966	rs6038841	A	C	.	.	VC=SNP
+20	799183	rs6038844	C	T	.	.	VC=SNP
+20	799187	rs6055031	A	G	.	.	VC=SNP
+20	799287	rs6086055	C	T	.	.	VC=SNP
+20	799534	rs35963124	A	G	.	.	VC=SNP
+20	799545	rs7266910	A	G	.	.	VC=SNP
+20	799583	rs2064784	A	G	.	.	VC=SNP
+20	799613	rs57322792	C	G	.	.	VC=SNP
+20	799720	rs56034133	C	G	.	.	VC=SNP
+20	799774	rs6117822	A	G	.	.	VC=SNP
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+20	799932	rs55783436	C	T	.	.	VC=SNP
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+20	800202	rs662846	A	C	.	.	VC=SNP
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+20	800249	rs662907	A	C	.	.	VC=SNP
+20	800393	rs559375	A	G	.	.	VC=SNP
+20	800486	rs805878	A	G	.	.	VC=SNP
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+20	800648	rs56993397	C	T	.	.	VC=SNP
+20	800649	rs60819918	A	G	.	.	VC=SNP
+20	801160	rs28655648	C	T	.	.	VC=SNP
+20	801178	rs8183411	C	T	.	.	VC=SNP
+20	801184	rs8184122	C	T	.	.	VC=SNP
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+20	801206	rs8184137	C	T	.	.	VC=SNP
+20	801230	rs2873340	C	T	.	.	VC=SNP
+20	801344	rs6077216	C	T	.	.	VC=SNP
+20	801393	rs6086070	A	C	.	.	VC=SNP
+20	801395	rs6133428	G	T	.	.	VC=SNP
+20	801939	rs599930	C	T	.	.	VC=SNP
+20	802019	rs57400069	G	T	.	.	VC=SNP
+20	802096	rs55977465	A	G	.	.	VC=SNP
+20	802123	rs600810	A	C	.	.	VC=SNP
+20	802192	rs5024694	C	T	.	.	VC=SNP
+20	802543	rs62186440	A	G	.	.	VC=SNP
+20	802801	rs60437603	C	T	.	.	VC=SNP
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+20	803157	rs34039372	G	T	.	.	VC=SNP
+20	803265	rs616010	A	G	.	.	VC=SNP
+20	803694	rs62186441	A	G	.	.	VC=SNP
+20	803752	rs628573	C	T	.	.	VC=SNP
+20	804115	rs630323	A	C	.	.	VC=SNP
+20	804261	rs6107998	C	T	.	.	VC=SNP
+20	805097	rs577491	A	G	.	.	VC=SNP
+20	805171	rs62186442	C	T	.	.	VC=SNP
+20	805771	rs6117839	C	T	.	.	VC=SNP
+20	805961	rs4816005	C	G	.	.	VC=SNP
+20	805981	rs4816006	C	T	.	.	VC=SNP
+20	806075	rs56108522	C	G	.	.	VC=SNP
+20	806076	rs8122138	A	G	.	.	VC=SNP
+20	806471	rs661226	C	G	.	.	VC=SNP
+20	806677	rs672385	C	T	.	.	VC=SNP
+20	806712	rs11905161	C	T	.	.	VC=SNP
+20	806737	rs7261796	C	T	.	.	VC=SNP
+20	806771	rs8114873	C	T	.	.	VC=SNP
+20	806821	rs6086097	G	T	.	.	VC=SNP
+20	806860	rs6117845	C	T	.	.	VC=SNP
+20	806878	rs673261	C	T	.	.	VC=SNP
+20	807061	rs6038870	G	T	.	.	VC=SNP
+20	807074	rs6038871	C	T	.	.	VC=SNP
+20	807090	rs6077222	C	T	.	.	VC=SNP
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+20	807223	rs6055106	C	T	.	.	VC=SNP
+20	807241	rs6117847	C	T	.	.	VC=SNP
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+20	807259	rs4816008	A	G	.	.	VC=SNP
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+20	807635	rs4813833	A	G	.	.	VC=SNP
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+20	808430	rs805881	A	G	.	.	VC=SNP
+20	808483	rs11700178	A	G	.	.	VC=SNP
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+20	808703	rs8184824	A	G	.	.	VC=SNP
+20	809368	rs535376	A	G	.	.	VC=SNP
+20	809499	rs6117857	C	T	.	.	VC=SNP
+20	809500	rs6038882	A	G	.	.	VC=SNP
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+20	809812	rs58691091	C	G	.	.	VC=SNP
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+20	809837	rs6117860	A	G	.	.	VC=SNP
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+20	810146	rs4816011	C	G	.	.	VC=SNP
+20	810406	rs6055140	A	G	.	.	VC=SNP
+20	810707	rs805883	A	G	.	.	VC=SNP
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+20	810914	rs56366727	C	T	.	.	VC=SNP
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+20	810954	rs571126	A	G	.	.	VC=SNP
+20	811091	rs28672189	C	T	.	.	VC=SNP
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+20	811209	rs55820484	A	G	.	.	VC=SNP
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+20	811507	rs486484	A	G	.	.	VC=SNP
+20	811846	rs8122052	C	G	.	.	VC=SNP
+20	811855	rs28685131	A	G	.	.	VC=SNP
+20	811874	rs490193	C	T	.	.	VC=SNP
+20	811975	rs491100	C	T	.	.	VC=SNP
+20	812001	rs656768	A	T	.	.	VC=SNP
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+20	812965	rs9789788	C	T	.	.	VC=SNP
+20	813280	rs7353375	G	T	.	.	VC=SNP
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+20	813669	rs6077230	A	G	.	.	VC=SNP
+20	813751	rs685119	C	G	.	.	VC=SNP
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+20	814381	rs576384	C	G	.	.	VC=SNP
+20	814577	rs55870727	C	G	.	.	VC=SNP
+20	814701	rs579048	C	G	.	.	VC=SNP
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+20	815138	rs6117900	A	G	.	.	VC=SNP
+20	815841	rs61494023	A	C	.	.	VC=SNP
+20	815845	rs13038389	A	C	.	.	VC=SNP
+20	815858	rs58568408	C	T	.	.	VC=SNP
+20	815868	rs56106100	C	T	.	.	VC=SNP
+20	815874	rs57218317	C	T	.	.	VC=SNP
+20	815884	rs57707603	C	T	.	.	VC=SNP
+20	815901	rs6086133	A	G	.	.	VC=SNP
+20	816394	rs7271234	C	T	.	.	VC=SNP
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+20	817078	rs6055226	A	G	.	.	VC=SNP
+20	817689	rs13044145	G	T	.	.	VC=SNP
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+20	817819	rs61107114	A	C	.	.	VC=SNP
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+20	818835	rs993781	A	G	.	.	VC=SNP
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+20	819030	rs516685	C	G	.	.	VC=SNP
+20	819403	rs58340386	G	T	.	.	VC=SNP
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+20	820738	rs41301746	C	T	.	.	VC=SNP
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+20	828591	rs58262002	C	T	.	.	VC=SNP
+20	828791	rs1106699	A	G	.	.	VC=SNP
+20	828809	rs7270782	C	T	.	.	VC=SNP
+20	828888	rs7260915	C	T	.	.	VC=SNP
+20	828905	rs7265029	G	T	.	.	VC=SNP
+20	829015	rs6133487	C	T	.	.	VC=SNP
+20	829184	rs7266588	A	G	.	.	VC=SNP
+20	829426	rs7272617	C	T	.	.	VC=SNP
+20	829609	rs2006668	C	G	.	.	VC=SNP
+20	829802	rs2011838	C	T	.	.	VC=SNP
+20	829853	rs1810578	G	T	.	.	VC=SNP
+20	829859	rs7360151	A	G	.	.	VC=SNP
+20	829860	rs7361825	A	G	.	.	VC=SNP
+20	829888	rs2011846	A	C	.	.	VC=SNP
+20	829977	rs11908060	C	T	.	.	VC=SNP
+20	830018	rs6086204	C	T	.	.	VC=SNP
+20	830152	rs8124017	C	G	.	.	VC=SNP
+20	830298	rs2317027	G	T	.	.	VC=SNP
+20	830308	rs4467341	A	T	.	.	VC=SNP
+20	830413	rs2317028	A	C	.	.	VC=SNP
+20	830538	rs2317029	C	G	.	.	VC=SNP
+20	830585	rs6077255	C	T	.	.	VC=SNP
+20	830607	rs60698188	C	T	.	.	VC=SNP
+20	830779	rs28710475	C	T	.	.	VC=SNP
+20	830825	rs4816021	A	G	.	.	VC=SNP
+20	831047	rs6516316	C	T	.	.	VC=SNP
+20	831093	rs4813841	A	G	.	.	VC=SNP
+20	831251	rs6140423	A	G	.	.	VC=SNP
+20	831309	rs59729630	A	G	.	.	VC=SNP
+20	831405	rs6133493	G	T	.	.	VC=SNP
+20	831461	rs6140424	A	G	.	.	VC=SNP
+20	831854	rs6140426	C	T	.	.	VC=SNP
+20	831882	rs7270756	C	T	.	.	VC=SNP
+20	832208	rs6140429	A	G	.	.	VC=SNP
+20	832341	rs6077261	C	T	.	.	VC=SNP
+20	832503	rs6086225	C	T	.	.	VC=SNP
+20	832653	rs4816022	G	T	.	.	VC=SNP
+20	832763	rs4816023	A	G	.	.	VC=SNP
+20	832796	rs55787763	C	T	.	.	VC=SNP
+20	832798	rs55821727	C	T	.	.	VC=SNP
+20	832889	rs6117951	C	T	.	.	VC=SNP
+20	832907	rs6117952	C	T	.	.	VC=SNP
+20	833038	rs6117954	A	G	.	.	VC=SNP
+20	833074	rs6117955	A	G	.	.	VC=SNP
+20	833103	rs6117957	C	T	.	.	VC=SNP
+20	833261	rs35364639	G	T	.	.	VC=SNP
+20	833357	rs6140433	C	T	.	.	VC=SNP
+20	833365	rs6140434	G	T	.	.	VC=SNP
+20	833414	rs6108054	C	T	.	.	VC=SNP
+20	833686	rs6038961	C	T	.	.	VC=SNP
+20	834107	rs8123505	C	T	.	.	VC=SNP
+20	834152	rs6140436	A	C	.	.	VC=SNP
+20	834251	rs8118565	G	T	.	.	VC=SNP
+20	834324	rs8123628	C	G	.	.	VC=SNP
+20	834480	rs12625746	C	T	.	.	VC=SNP
+20	835157	rs6086236	A	G	.	.	VC=SNP
+20	835781	rs6117964	A	G	.	.	VC=SNP
+20	835847	rs6117965	A	G	.	.	VC=SNP
+20	835953	rs612839	C	T	.	.	VC=SNP
+20	836002	rs6055335	A	C	.	.	VC=SNP
+20	836236	rs6117966	A	G	.	.	VC=SNP
+20	836346	rs4813842	A	C	.	.	VC=SNP
+20	836485	rs8117118	A	G	.	.	VC=SNP
+20	836526	rs571870	A	G	.	.	VC=SNP
+20	836700	rs626703	C	T	.	.	VC=SNP
+20	836811	rs12624479	C	T	.	.	VC=SNP
+20	837076	rs577199	A	G	.	.	VC=SNP
+20	837559	rs6133505	C	T	.	.	VC=SNP
+20	837800	rs6140448	C	T	.	.	VC=SNP
+20	837822	rs4816024	A	G	.	.	VC=SNP
+20	837874	rs8120666	C	T	.	.	VC=SNP
+20	837976	rs7272773	C	G	.	.	VC=SNP
+20	838001	rs8120435	A	G	.	.	VC=SNP
+20	838260	rs2183307	C	T	.	.	VC=SNP
+20	838290	rs6077282	G	T	.	.	VC=SNP
+20	838603	rs6108070	A	G	.	.	VC=SNP
+20	838776	rs6108071	C	G	.	.	VC=SNP
+20	838980	rs6117970	C	T	.	.	VC=SNP
+20	839038	rs6117971	A	G	.	.	VC=SNP
+20	839070	rs2104741	A	G	.	.	VC=SNP
+20	839313	rs6117973	A	G	.	.	VC=SNP
+20	839515	rs6055350	C	G	.	.	VC=SNP
+20	839568	rs6055353	C	G	.	.	VC=SNP
+20	839588	rs6086264	A	C	.	.	VC=SNP
+20	840044	rs62187469	A	C	.	.	VC=SNP
+20	840337	rs6117977	C	T	.	.	VC=SNP
+20	840405	rs6038974	A	G	.	.	VC=SNP
+20	840783	rs6117979	C	T	.	.	VC=SNP
+20	841096	rs12625462	A	G	.	.	VC=SNP
+20	841131	rs36068314	C	T	.	.	VC=SNP
+20	841928	rs6055376	A	G	.	.	VC=SNP
+20	841982	rs6086273	C	T	.	.	VC=SNP
+20	842329	rs6117994	C	T	.	.	VC=SNP
+20	842348	rs6055383	A	G	.	.	VC=SNP
+20	842616	rs4816027	A	G	.	.	VC=SNP
+20	842618	rs4816028	A	G	.	.	VC=SNP
+20	842694	rs6055385	A	T	.	.	VC=SNP
+20	842696	rs6055386	A	G	.	.	VC=SNP
+20	842824	rs62187471	A	G	.	.	VC=SNP
+20	842913	rs6133512	A	T	.	.	VC=SNP
+20	842938	rs6133513	A	G	.	.	VC=SNP
+20	842951	rs6055389	A	G	.	.	VC=SNP
+20	843043	rs6133514	A	T	.	.	VC=SNP
+20	843601	rs6140456	G	T	.	.	VC=SNP
+20	843659	rs6086281	A	G	.	.	VC=SNP
+20	843733	rs6118005	A	G	.	.	VC=SNP
+20	843843	rs12626011	A	G	.	.	VC=SNP
+20	843889	rs1536911	C	G	.	.	VC=SNP
+20	843941	rs6086283	A	G	.	.	VC=SNP
+20	843945	rs4816029	A	T	.	.	VC=SNP
+20	844007	rs6118006	C	T	.	.	VC=SNP
+20	844401	rs6118008	A	C	.	.	VC=SNP
+20	844640	rs6077289	C	T	.	.	VC=SNP
+20	844672	rs4816030	C	T	.	.	VC=SNP
+20	844692	rs4813845	C	T	.	.	VC=SNP
+20	844723	rs4816031	C	T	.	.	VC=SNP
+20	844801	rs6086286	A	G	.	.	VC=SNP
+20	845324	rs59569312	A	G	.	.	VC=SNP
+20	845944	rs6108082	A	G	.	.	VC=SNP
+20	845965	rs6118011	A	G	.	.	VC=SNP
+20	846115	rs6077292	C	T	.	.	VC=SNP
+20	846479	rs57207082	G	T	.	.	VC=SNP
+20	846566	rs9789797	A	G	.	.	VC=SNP
+20	846655	rs6055401	A	G	.	.	VC=SNP
+20	846705	rs2007819	C	T	.	.	VC=SNP
+20	846748	rs59984982	A	C	.	.	VC=SNP
+20	846983	rs884142	G	T	.	.	VC=SNP
+20	847183	rs1556168	C	T	.	.	VC=SNP
+20	847279	rs1556169	C	G	.	.	VC=SNP
+20	847355	rs1556170	A	G	.	.	VC=SNP
+20	847420	rs1556171	C	T	.	.	VC=SNP
+20	847495	rs1556172	C	T	.	.	VC=SNP
+20	847690	rs6086294	A	G	.	.	VC=SNP
+20	847701	rs6038982	C	T	.	.	VC=SNP
+20	848010	rs7265159	C	T	.	.	VC=SNP
+20	848067	rs6055421	A	G	.	.	VC=SNP
+20	848112	rs6108085	A	T	.	.	VC=SNP
+20	848204	rs6140475	C	T	.	.	VC=SNP
+20	848308	rs6118030	C	T	.	.	VC=SNP
+20	848323	rs6108086	C	T	.	.	VC=SNP
+20	848371	rs12624328	C	T	.	.	VC=SNP
+20	848617	rs4816033	C	T	.	.	VC=SNP
+20	848681	rs6118032	C	T	.	.	VC=SNP
+20	848897	rs1556173	A	T	.	.	VC=SNP
+20	849104	rs6086298	A	G	.	.	VC=SNP
+20	849169	rs1124740	C	G	.	.	VC=SNP
+20	849249	rs12624622	C	T	.	.	VC=SNP
+20	849253	rs1124739	A	G	.	.	VC=SNP
+20	849388	rs944107	C	G	.	.	VC=SNP
+20	849435	rs6086299	A	C	.	.	VC=SNP
+20	849594	rs34545642	C	T	.	.	VC=SNP
+20	849595	rs62187496	C	T	.	.	VC=SNP
+20	849599	rs56120237	C	T	.	.	VC=SNP
+20	849653	rs6140478	A	G	.	.	VC=SNP
+20	849717	rs6086301	A	G	.	.	VC=SNP
+20	849834	rs6086302	A	G	.	.	VC=SNP
+20	849993	rs16994418	C	G	.	.	VC=SNP
+20	850367	rs9789816	A	G	.	.	VC=SNP
+20	850376	rs1536912	A	G	.	.	VC=SNP
+20	850420	rs1536913	C	T	.	.	VC=SNP
+20	850449	rs60833192	A	G	.	.	VC=SNP
+20	850519	rs9789822	C	T	.	.	VC=SNP
+20	850583	rs6055439	A	G	.	.	VC=SNP
+20	850713	rs6086306	A	G	.	.	VC=SNP
+20	850944	rs6140486	A	G	.	.	VC=SNP
+20	851237	rs6055442	C	T	.	.	VC=SNP
+20	851618	rs1411191	C	T	.	.	VC=SNP
+20	851653	rs61309987	C	G	.	.	VC=SNP
+20	851769	rs1411192	A	G	.	.	VC=SNP
+20	851791	rs1411193	A	G	.	.	VC=SNP
+20	852048	rs6086309	A	G	.	.	VC=SNP
+20	852554	rs7262872	C	T	.	.	VC=SNP
+20	852609	rs12480495	A	G	.	.	VC=SNP
+20	852612	rs12480497	A	G	.	.	VC=SNP
+20	852847	rs6055458	A	G	.	.	VC=SNP
+20	852945	rs6038997	C	T	.	.	VC=SNP
+20	852975	rs6038998	C	T	.	.	VC=SNP
+20	853078	rs28516449	A	T	.	.	VC=SNP
+20	853093	rs13044064	C	T	.	.	VC=SNP
+20	853376	rs28394391	A	G	.	.	VC=SNP
+20	853435	rs1888087	G	T	.	.	VC=SNP
+20	853502	rs11907018	A	G	.	.	VC=SNP
+20	853602	rs28504506	A	G	.	.	VC=SNP
+20	853782	rs28731177	A	C	.	.	VC=SNP
+20	854134	rs4813850	A	G	.	.	VC=SNP
+20	854251	rs12625616	A	G	.	.	VC=SNP
+20	854309	rs6055466	C	T	.	.	VC=SNP
+20	854563	rs1360209	G	T	.	.	VC=SNP
+20	854618	rs58360957	A	G	.	.	VC=SNP
+20	854681	rs944108	C	T	.	.	VC=SNP
+20	854754	rs944109	A	G	.	.	VC=SNP
+20	854807	rs2297122	C	T	.	.	VC=SNP
+20	854900	rs2297123	C	T	.	.	VC=SNP
+20	854940	rs944110	C	T	.	.	VC=SNP
+20	854973	rs62641668	A	C	.	.	VC=SNP
+20	855339	rs6055483	A	G	.	.	VC=SNP
+20	855575	rs58166346	C	T	.	.	VC=SNP
+20	855602	rs56052238	A	G	.	.	VC=SNP
+20	855675	rs6055486	C	T	.	.	VC=SNP
+20	856211	rs6077300	A	C	.	.	VC=SNP
+20	856501	rs4599198	A	G	.	.	VC=SNP
+20	856519	rs4331587	A	T	.	.	VC=SNP
+20	856563	rs2015564	A	G	.	.	VC=SNP
+20	856593	rs2015567	A	G	.	.	VC=SNP
+20	856747	rs944113	C	T	.	.	VC=SNP
+20	856776	rs944114	A	G	.	.	VC=SNP
+20	856788	rs59921698	A	C	.	.	VC=SNP
+20	856791	rs4998383	A	C	.	.	VC=SNP
+20	856837	rs944115	A	G	.	.	VC=SNP
+20	857132	rs882807	A	G	.	.	VC=SNP
+20	857271	rs882806	A	G	.	.	VC=SNP
+20	857277	rs6108096	C	G	.	.	VC=SNP
+20	857333	rs6086314	A	G	.	.	VC=SNP
+20	857377	rs882805	A	G	.	.	VC=SNP
+20	857593	rs6055501	A	G	.	.	VC=SNP
+20	858060	rs871037	A	G	.	.	VC=SNP
+20	858325	rs6055507	A	T	.	.	VC=SNP
+20	858769	rs873147	A	G	.	.	VC=SNP
+20	858841	rs869171	A	G	.	.	VC=SNP
+20	859147	rs11906355	G	T	.	.	VC=SNP
+20	859467	rs7272569	C	T	.	.	VC=SNP
+20	859606	rs3827155	C	T	.	.	VC=SNP
+20	859622	rs6086321	C	T	.	.	VC=SNP
+20	859963	rs6055518	A	G	.	.	VC=SNP
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+20	860151	rs55666732	A	T	.	.	VC=SNP
+20	860426	rs61737018	C	T	.	.	VC=SNP
+20	860453	rs62641667	C	T	.	.	VC=SNP
+20	860516	rs1329813	A	C	.	.	VC=SNP
+20	860596	rs1329814	C	T	.	.	VC=SNP
+20	860754	rs55809364	C	T	.	.	VC=SNP
+20	860802	rs6140526	A	G	.	.	VC=SNP
+20	861106	rs6086326	C	T	.	.	VC=SNP
+20	861386	rs6055525	C	G	.	.	VC=SNP
+20	861598	rs13036768	A	G	.	.	VC=SNP
+20	861639	rs6108105	G	T	.	.	VC=SNP
+20	861743	rs4816045	C	G	.	.	VC=SNP
+20	861744	rs41282974	A	G	.	.	VC=SNP
+20	861821	rs62641666	C	T	.	.	VC=SNP
+20	861853	rs6086328	G	T	.	.	VC=SNP
+20	862167	rs6118055	C	T	.	.	VC=SNP
+20	862204	rs6039033	C	T	.	.	VC=SNP
+20	862355	rs7345447	A	G	.	.	VC=SNP
+20	862628	rs62187497	A	C	.	.	VC=SNP
+20	862717	rs6055542	G	T	.	.	VC=SNP
+20	862823	rs6077309	A	G	.	.	VC=SNP
+20	863053	rs59538275	A	G	.	.	VC=SNP
+20	863056	rs6118067	A	G	.	.	VC=SNP
+20	863271	rs6133546	A	G	.	.	VC=SNP
+20	863348	rs6140534	A	C	.	.	VC=SNP
+20	863496	rs6055548	A	G	.	.	VC=SNP
+20	863508	rs16994527	A	G	.	.	VC=SNP
+20	863706	rs6055551	C	T	.	.	VC=SNP
+20	863744	rs61141395	C	T	.	.	VC=SNP
+20	863846	rs6055553	C	T	.	.	VC=SNP
+20	863923	rs6118072	A	G	.	.	VC=SNP
+20	864074	rs6055556	C	T	.	.	VC=SNP
+20	864301	rs6039039	G	T	.	.	VC=SNP
+20	864455	rs3787564	C	T	.	.	VC=SNP
+20	864512	rs3787565	A	G	.	.	VC=SNP
+20	864562	rs6118076	C	T	.	.	VC=SNP
+20	864640	rs3787566	C	T	.	.	VC=SNP
+20	864660	rs3787567	G	T	.	.	VC=SNP
+20	864997	rs6118079	C	T	.	.	VC=SNP
+20	865054	rs6055559	C	G	.	.	VC=SNP
+20	865059	rs6118080	C	T	.	.	VC=SNP
+20	865107	rs6108109	C	T	.	.	VC=SNP
+20	865366	rs6077320	G	T	.	.	VC=SNP
+20	865537	rs6055560	C	T	.	.	VC=SNP
+20	865896	rs62641665	A	G	.	.	VC=SNP
+20	866230	rs12625015	C	G	.	.	VC=SNP
+20	866332	rs12625562	A	T	.	.	VC=SNP
+20	866350	rs12625348	A	C	.	.	VC=SNP
+20	866365	rs12626075	A	G	.	.	VC=SNP
+20	866742	rs6118087	C	T	.	.	VC=SNP
+20	866811	rs6077321	C	T	.	.	VC=SNP
+20	866815	rs6140550	G	T	.	.	VC=SNP
+20	866943	rs6118088	A	C	.	.	VC=SNP
+20	867228	rs6039053	C	T	.	.	VC=SNP
+20	867236	rs6039054	C	T	.	.	VC=SNP
+20	867263	rs61494461	C	T	.	.	VC=SNP
+20	867294	rs6055575	C	T	.	.	VC=SNP
+20	867324	rs6039055	A	G	.	.	VC=SNP
+20	867326	rs6039056	C	T	.	.	VC=SNP
+20	867337	rs60748410	C	T	.	.	VC=SNP
+20	867649	rs59916113	A	G	.	.	VC=SNP
+20	868639	rs11908593	C	T	.	.	VC=SNP
+20	869117	rs56218907	A	G	.	.	VC=SNP
+20	869396	rs56011438	A	C	.	.	VC=SNP
+20	870146	rs6140552	C	T	.	.	VC=SNP
+20	870556	rs6086361	A	G	.	.	VC=SNP
+20	870730	rs61591126	A	G	.	.	VC=SNP
+20	870745	rs6039082	G	T	.	.	VC=SNP
+20	870906	rs13038328	C	G	.	.	VC=SNP
+20	870911	rs13043898	C	G	.	.	VC=SNP
+20	870923	rs13037050	G	T	.	.	VC=SNP
+20	871012	rs13038240	C	G	.	.	VC=SNP
+20	871157	rs6118095	C	G	.	.	VC=SNP
+20	871236	rs6140553	C	T	.	.	VC=SNP
+20	871782	rs6118106	A	G	.	.	VC=SNP
+20	871830	rs4813852	A	C	.	.	VC=SNP
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+20	872123	rs4816050	C	T	.	.	VC=SNP
+20	872175	rs6086364	C	T	.	.	VC=SNP
+20	872318	rs6118109	C	T	.	.	VC=SNP
+20	872466	rs6118110	A	G	.	.	VC=SNP
+20	872509	rs6108118	G	T	.	.	VC=SNP
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+20	872751	rs2039161	A	G	.	.	VC=SNP
+20	873154	rs6108122	A	G	.	.	VC=SNP
+20	873277	rs6108123	A	C	.	.	VC=SNP
+20	873600	rs6118118	A	G	.	.	VC=SNP
+20	873739	rs62187498	C	G	.	.	VC=SNP
+20	873749	rs4816051	G	T	.	.	VC=SNP
+20	875028	rs55965819	C	T	.	.	VC=SNP
+20	875159	rs6118131	C	T	.	.	VC=SNP
+20	875368	rs11908221	A	C	.	.	VC=SNP
+20	875913	rs4816055	C	T	.	.	VC=SNP
+20	876133	rs57165545	C	T	.	.	VC=SNP
+20	876243	rs6086375	A	G	.	.	VC=SNP
+20	876290	rs717399	C	T	.	.	VC=SNP
+20	876411	rs1590870	C	T	.	.	VC=SNP
+20	876420	rs537795	C	T	.	.	VC=SNP
+20	876578	rs714681	C	T	.	.	VC=SNP
+20	876681	rs8182721	C	G	.	.	VC=SNP
+20	876702	rs1590871	A	G	.	.	VC=SNP
+20	877101	rs12481173	A	G	.	.	VC=SNP
+20	877205	rs6118137	G	T	.	.	VC=SNP
+20	877686	rs6077336	C	T	.	.	VC=SNP
+20	878014	rs57445472	A	G	.	.	VC=SNP
+20	878154	rs58879316	A	G	.	.	VC=SNP
+20	879517	rs6140578	C	T	.	.	VC=SNP
+20	879666	rs4813856	A	G	.	.	VC=SNP
+20	879736	rs4816056	C	T	.	.	VC=SNP
+20	879745	rs62187499	C	T	.	.	VC=SNP
+20	879793	rs4813857	C	T	.	.	VC=SNP
+20	879838	rs55814905	C	G	.	.	VC=SNP
+20	879853	rs4813858	A	G	.	.	VC=SNP
+20	879895	rs6086388	A	T	.	.	VC=SNP
+20	880039	rs7262786	C	T	.	.	VC=SNP
+20	880090	rs534081	A	G	.	.	VC=SNP
+20	880142	rs7272754	C	T	.	.	VC=SNP
+20	880148	rs62187500	A	G	.	.	VC=SNP
+20	880155	rs7272759	C	T	.	.	VC=SNP
+20	880176	rs6055711	A	G	.	.	VC=SNP
+20	880328	rs6140585	C	T	.	.	VC=SNP
+20	880363	rs62187501	A	C	.	.	VC=SNP
+20	880467	rs10427444	A	G	.	.	VC=SNP
+20	880651	rs6140586	A	G	.	.	VC=SNP
+20	880669	rs6055714	C	T	.	.	VC=SNP
+20	880964	rs6039123	A	C	.	.	VC=SNP
+20	881077	rs58589902	C	T	.	.	VC=SNP
+20	881093	rs6039124	A	G	.	.	VC=SNP
+20	881364	rs6039126	C	T	.	.	VC=SNP
+20	881575	rs6086394	C	T	.	.	VC=SNP
+20	881620	rs6077343	A	T	.	.	VC=SNP
+20	881644	rs6055719	A	G	.	.	VC=SNP
+20	881703	rs6055720	C	T	.	.	VC=SNP
+20	882080	rs12624548	C	T	.	.	VC=SNP
+20	882429	rs6055722	A	G	.	.	VC=SNP
+20	882452	rs28717671	C	G	.	.	VC=SNP
+20	882598	rs10427421	C	G	.	.	VC=SNP
+20	882734	rs34499029	G	T	.	.	VC=SNP
+20	882803	rs6039132	A	G	.	.	VC=SNP
+20	882838	rs6140596	G	T	.	.	VC=SNP
+20	883000	rs6039134	G	T	.	.	VC=SNP
+20	883034	rs6055727	G	T	.	.	VC=SNP
+20	883156	rs6055730	A	G	.	.	VC=SNP
+20	883371	rs6133574	A	G	.	.	VC=SNP
+20	883382	rs6055732	C	T	.	.	VC=SNP
+20	883514	rs6055734	A	C	.	.	VC=SNP
+20	883644	rs2144151	G	T	.	.	VC=SNP
+20	883794	rs58905802	C	T	.	.	VC=SNP
+20	883923	rs542943	G	T	.	.	VC=SNP
+20	884070	rs6133576	A	G	.	.	VC=SNP
+20	884132	rs6077347	C	G	.	.	VC=SNP
+20	884353	rs59390575	C	T	.	.	VC=SNP
+20	884432	rs61478366	C	T	.	.	VC=SNP
+20	884590	rs59259844	A	G	.	.	VC=SNP
+20	884841	rs6108134	A	G	.	.	VC=SNP
+20	885414	rs6055747	C	T	.	.	VC=SNP
+20	885434	rs56303988	C	T	.	.	VC=SNP
+20	886002	rs6118168	C	T	.	.	VC=SNP
+20	886050	rs6118169	C	G	.	.	VC=SNP
+20	886379	rs728265	A	C	.	.	VC=SNP
+20	886546	rs2077972	A	C	.	.	VC=SNP
+20	886853	rs6055765	A	G	.	.	VC=SNP
+20	886856	rs976165	C	T	.	.	VC=SNP
+20	886911	rs976166	C	G	.	.	VC=SNP
+20	887040	rs8124125	A	C	.	.	VC=SNP
+20	887455	rs6086418	A	T	.	.	VC=SNP
+20	887521	rs742921	C	G	.	.	VC=SNP
+20	887675	rs742922	C	T	.	.	VC=SNP
+20	887800	rs6055768	A	G	.	.	VC=SNP
+20	888233	rs57230954	C	G	.	.	VC=SNP
+20	888359	rs58599386	A	G	.	.	VC=SNP
+20	888428	rs59153786	C	T	.	.	VC=SNP
+20	888492	rs58445359	C	T	.	.	VC=SNP
+20	888523	rs2011489	C	T	.	.	VC=SNP
+20	888576	rs61271026	C	G	.	.	VC=SNP
+20	888862	rs62187502	C	T	.	.	VC=SNP
+20	889024	rs564121	C	G	.	.	VC=SNP
+20	889317	rs13040505	C	G	.	.	VC=SNP
+20	889349	rs8119262	C	T	.	.	VC=SNP
+20	889722	rs575136	C	T	.	.	VC=SNP
+20	889869	rs487473	C	T	.	.	VC=SNP
+20	889904	rs56256143	A	C	.	.	VC=SNP
+20	890014	rs35734521	A	G	.	.	VC=SNP
+20	890278	rs3787569	A	G	.	.	VC=SNP
+20	890349	rs730169	C	G	.	.	VC=SNP
+20	890520	rs57036931	C	G	.	.	VC=SNP
+20	890658	rs60302402	C	T	.	.	VC=SNP
+20	890673	rs511431	C	G	.	.	VC=SNP
+20	890679	rs511465	A	G	.	.	VC=SNP
+20	891062	rs6055787	C	T	.	.	VC=SNP
+20	891510	rs2144150	C	T	.	.	VC=SNP
+20	892438	rs11700328	A	C	.	.	VC=SNP
+20	892560	rs35093728	G	T	.	.	VC=SNP
+20	892723	rs910388	A	G	.	.	VC=SNP
+20	892948	rs574628	A	G	.	.	VC=SNP
+20	893079	rs6077355	C	T	.	.	VC=SNP
+20	893981	rs8117301	G	T	.	.	VC=SNP
+20	894125	rs6055803	A	C	.	.	VC=SNP
+20	894351	rs8122386	A	G	.	.	VC=SNP
+20	894378	rs57001576	A	G	.	.	VC=SNP
+20	894722	rs910389	A	G	.	.	VC=SNP
+20	894799	rs8122606	G	T	.	.	VC=SNP
+20	894881	rs523865	A	G	.	.	VC=SNP
+20	894951	rs11087800	A	G	.	.	VC=SNP
+20	894967	rs524765	A	G	.	.	VC=SNP
+20	895038	rs525608	A	G	.	.	VC=SNP
+20	895169	rs531192	C	T	.	.	VC=SNP
+20	895325	rs11697918	A	G	.	.	VC=SNP
+20	895340	rs4816064	G	T	.	.	VC=SNP
+20	895418	rs533194	A	G	.	.	VC=SNP
+20	895423	rs6086446	C	T	.	.	VC=SNP
+20	895444	rs6055818	C	T	.	.	VC=SNP
+20	895457	rs1014897	C	T	.	.	VC=SNP
+20	895492	rs6086447	A	G	.	.	VC=SNP
+20	895531	rs1014898	C	T	.	.	VC=SNP
+20	896012	rs478451	A	G	.	.	VC=SNP
+20	896299	rs502522	C	T	.	.	VC=SNP
+20	896303	rs6086450	G	T	.	.	VC=SNP
+20	896753	rs17702306	G	T	.	.	VC=SNP
+20	897062	rs509769	C	G	.	.	VC=SNP
+20	897095	rs509880	A	C	.	.	VC=SNP
+20	897291	rs6140617	C	T	.	.	VC=SNP
+20	897495	rs56222355	C	T	.	.	VC=SNP
+20	897579	rs62187503	A	G	.	.	VC=SNP
+20	897583	rs6118197	A	G	.	.	VC=SNP
+20	897614	rs1997923	C	T	.	.	VC=SNP
+20	898170	rs60821030	A	C	.	.	VC=SNP
+20	898218	rs540995	C	T	.	.	VC=SNP
+20	898271	rs6039167	A	G	.	.	VC=SNP
+20	898329	rs6133581	C	T	.	.	VC=SNP
+20	898372	rs61578886	C	T	.	.	VC=SNP
+20	898549	rs6055833	G	T	.	.	VC=SNP
+20	898581	rs6133582	C	T	.	.	VC=SNP
+20	898593	rs11907273	C	T	.	.	VC=SNP
+20	898599	rs6039168	C	T	.	.	VC=SNP
+20	898660	rs60763073	C	G	.	.	VC=SNP
+20	899036	rs61239524	C	T	.	.	VC=SNP
+20	899067	rs6055839	G	T	.	.	VC=SNP
+20	899379	rs6118205	A	G	.	.	VC=SNP
+20	899783	rs61243736	C	T	.	.	VC=SNP
+20	899787	rs57014265	C	T	.	.	VC=SNP
+20	899897	rs6055846	C	T	.	.	VC=SNP
+20	899955	rs59324768	C	T	.	.	VC=SNP
+20	900014	rs6118207	C	G	.	.	VC=SNP
+20	900197	rs56662744	C	T	.	.	VC=SNP
+20	900273	rs12625723	A	G	.	.	VC=SNP
+20	900416	rs497602	C	G	.	.	VC=SNP
+20	900480	rs35200853	C	T	.	.	VC=SNP
+20	900637	rs62187504	C	T	.	.	VC=SNP
+20	900756	rs9679950	C	T	.	.	VC=SNP
+20	900831	rs501322	C	T	.	.	VC=SNP
+20	900934	rs57607035	C	T	.	.	VC=SNP
+20	900935	rs519304	G	T	.	.	VC=SNP
+20	901125	rs59324268	C	G	.	.	VC=SNP
+20	901332	rs8121847	C	T	.	.	VC=SNP
+20	901676	rs530365	C	T	.	.	VC=SNP
+20	901820	rs6133586	C	T	.	.	VC=SNP
+20	901882	rs553378	A	G	.	.	VC=SNP
+20	901931	rs549506	C	G	.	.	VC=SNP
+20	902002	rs554362	A	G	.	.	VC=SNP
+20	902060	rs6133587	G	T	.	.	VC=SNP
+20	902273	rs6039178	G	T	.	.	VC=SNP
+20	902310	rs573674	C	G	.	.	VC=SNP
+20	902897	rs473051	C	G	.	.	VC=SNP
+20	903020	rs474057	A	G	.	.	VC=SNP
+20	903267	rs28520306	A	T	.	.	VC=SNP
+20	903294	rs59826367	A	G	.	.	VC=SNP
+20	903616	rs6118222	A	G	.	.	VC=SNP
+20	904132	rs59839174	A	T	.	.	VC=SNP
+20	904180	rs59328012	A	C	.	.	VC=SNP
+20	904259	rs6055880	C	T	.	.	VC=SNP
+20	904285	rs6133588	C	T	.	.	VC=SNP
+20	904484	rs7274313	A	G	.	.	VC=SNP
+20	904625	rs16995037	C	G	.	.	VC=SNP
+20	904668	rs1997924	C	T	.	.	VC=SNP
+20	904895	rs58138106	A	G	.	.	VC=SNP
+20	905142	rs536411	C	T	.	.	VC=SNP
+20	905143	rs7267469	A	G	.	.	VC=SNP
+20	905154	rs7273309	C	T	.	.	VC=SNP
+20	905448	rs7261762	A	G	.	.	VC=SNP
+20	905627	rs6055886	A	G	.	.	VC=SNP
+20	905751	rs6039182	C	T	.	.	VC=SNP
+20	905781	rs60636269	A	G	.	.	VC=SNP
+20	905785	rs7267882	A	G	.	.	VC=SNP
+20	905810	rs6039184	C	T	.	.	VC=SNP
+20	905878	rs6039185	C	T	.	.	VC=SNP
+20	905987	rs6039186	C	T	.	.	VC=SNP
+20	905992	rs7263917	C	T	.	.	VC=SNP
+20	906104	rs61035320	A	G	.	.	VC=SNP
+20	906198	rs61032375	C	G	.	.	VC=SNP
+20	906208	rs60325925	A	C	.	.	VC=SNP
+20	906233	rs56751725	C	G	.	.	VC=SNP
+20	906235	rs507636	A	G	.	.	VC=SNP
+20	906285	rs8118069	C	T	.	.	VC=SNP
+20	906336	rs6140636	A	G	.	.	VC=SNP
+20	906382	rs58852849	A	G	.	.	VC=SNP
+20	906747	rs8114265	C	T	.	.	VC=SNP
+20	906828	rs8114326	C	T	.	.	VC=SNP
+20	906841	rs8122013	A	G	.	.	VC=SNP
+20	906849	rs8118368	C	T	.	.	VC=SNP
+20	906968	rs6055895	C	T	.	.	VC=SNP
+20	906988	rs6055896	A	G	.	.	VC=SNP
+20	907045	rs8123328	G	T	.	.	VC=SNP
+20	907426	rs7265788	A	G	.	.	VC=SNP
+20	907507	rs6118247	A	G	.	.	VC=SNP
+20	907650	rs7267799	C	T	.	.	VC=SNP
+20	907655	rs7263171	C	T	.	.	VC=SNP
+20	907684	rs58642669	C	T	.	.	VC=SNP
+20	908475	rs6140638	A	G	.	.	VC=SNP
+20	908926	rs6055907	A	C	.	.	VC=SNP
+20	909016	rs59934546	C	T	.	.	VC=SNP
+20	909170	rs55888822	A	G	.	.	VC=SNP
+20	909190	rs60350656	A	G	.	.	VC=SNP
+20	909217	rs58927366	C	G	.	.	VC=SNP
+20	909337	rs57721013	A	T	.	.	VC=SNP
+20	909338	rs60414169	A	G	.	.	VC=SNP
+20	909450	rs473042	C	G	.	.	VC=SNP
+20	909453	rs6140639	A	G	.	.	VC=SNP
+20	909642	rs6140640	A	G	.	.	VC=SNP
+20	909771	rs475922	C	T	.	.	VC=SNP
+20	909820	rs34797815	C	T	.	.	VC=SNP
+20	909863	rs1854569	A	T	.	.	VC=SNP
+20	910134	rs1329815	A	C	.	.	VC=SNP
+20	910160	rs6077381	C	T	.	.	VC=SNP
+20	910234	rs501122	G	T	.	.	VC=SNP
+20	910263	rs57275446	A	T	.	.	VC=SNP
+20	910266	rs1329816	C	T	.	.	VC=SNP
+20	910344	rs6077382	G	T	.	.	VC=SNP
+20	910743	rs506357	A	G	.	.	VC=SNP
+20	910763	rs6118260	A	G	.	.	VC=SNP
+20	910824	rs6077383	C	T	.	.	VC=SNP
+20	910892	rs13040367	A	C	.	.	VC=SNP
+20	911405	rs6055934	C	T	.	.	VC=SNP
+20	911487	rs6077384	C	T	.	.	VC=SNP
+20	911494	rs6077385	C	T	.	.	VC=SNP
+20	911529	rs6077386	C	T	.	.	VC=SNP
+20	912100	rs6055937	C	T	.	.	VC=SNP
+20	912219	rs6055940	C	T	.	.	VC=SNP
+20	912259	rs7262296	C	T	.	.	VC=SNP
+20	912286	rs6055941	C	T	.	.	VC=SNP
+20	912626	rs761570	A	G	.	.	VC=SNP
+20	912665	rs761571	C	T	.	.	VC=SNP
+20	912699	rs761572	C	T	.	.	VC=SNP
+20	912867	rs11906088	A	G	.	.	VC=SNP
+20	913000	rs35862439	C	T	.	.	VC=SNP
+20	913035	rs6118267	G	T	.	.	VC=SNP
diff -r 000000000000 -r b001b50f2009 test-data/hapmap.small.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hapmap.small.vcf	Mon Jan 27 09:28:06 2014 -0500
@@ -0,0 +1,5000 @@
+20	61795	rs4814683	G	T	.	.	HM3
+20	63244	rs6139074	A	C	.	.	HM3
+20	63799	rs1418258	C	T	.	.	HM3
+20	68749	rs6086616	T	C	.	.	HM3
+20	69094	rs6039403	G	A	.	.	HM3
+20	74347	rs6135141	G	A	.	.	HM3
+20	75254	rs892665	C	A	.	.	HM3
+20	76962	rs6111385	T	C	.	.	HM3
+20	80655	rs2196239	A	G	.	.	HM3
+20	82416	rs7266748	T	C	.	.	HM3
+20	87416	rs1935386	A	C	.	.	HM3
+20	90984	rs1077784	A	G	.	.	HM3
+20	91508	rs6051659	G	A	.	.	HM3
+20	91707	rs8122066	C	T	.	.	HM3
+20	93499	rs6051856	T	C	.	.	HM3
+20	96931	rs6052070	A	G	.	.	HM3
+20	100505	rs6037772	T	C	.	.	HM3
+20	100699	rs6116236	C	T	.	.	HM3
+20	101362	rs6139361	G	A	.	.	HM3
+20	102181	rs6052493	T	C	.	.	HM3
+20	108328	rs1954267	A	C	.	.	HM3
+20	109272	rs6038037	C	G	.	.	HM3
+20	121976	rs6038405	G	A	.	.	HM3
+20	122508	rs6117214	G	A	.	.	HM3
+20	124302	rs6038528	A	C	.	.	HM3
+20	125121	rs1342137	C	T	.	.	HM3
+20	126529	rs6133348	G	A	.	.	HM3
+20	126614	rs6117404	T	C	.	.	HM3
+20	126678	rs11907333	T	C	.	.	HM3
+20	127720	rs753217	A	C	.	.	HM3
+20	129063	rs16994490	A	G	.	.	HM3
+20	129613	rs4815966	G	A	.	.	HM3
+20	131362	rs6054812	C	T	.	.	HM3
+20	133900	rs12625439	C	G	.	.	HM3
+20	134017	rs6055045	A	G	.	.	HM3
+20	134476	rs6055084	T	C	.	.	HM3
+20	134539	rs6086092	A	T	.	.	HM3
+20	134643	rs6038867	C	T	.	.	HM3
+20	134931	rs2316226	T	G	.	.	HM3
+20	136568	rs6108048	A	C	.	.	HM3
+20	137310	rs6086226	C	A	.	.	HM3
+20	137900	rs1434789	T	G	.	.	HM3
+20	137933	rs1434790	C	G	.	.	HM3
+20	138004	rs6055356	G	C	.	.	HM3
+20	138125	rs2298108	G	T	.	.	HM3
+20	138148	rs2298109	C	T	.	.	HM3
+20	138555	rs1858594	T	C	.	.	HM3
+20	139173	rs11087789	T	C	.	.	HM3
+20	139362	rs6055460	G	A	.	.	HM3
+20	139409	rs12624951	G	A	.	.	HM3
+20	139456	rs12624954	G	A	.	.	HM3
+20	139576	rs16995685	C	A	.	.	HM3
+20	139841	rs4142303	A	T	.	.	HM3
+20	140086	rs6039029	G	A	.	.	HM3
+20	140280	rs6039035	C	T	.	.	HM3
+20	140695	rs6086352	A	G	.	.	HM3
+20	145413	rs6086539	A	G	.	.	HM3
+20	147685	rs1858597	A	C	.	.	HM3
+20	148084	rs4816104	T	C	.	.	HM3
+20	149975	rs6077481	T	C	.	.	HM3
+20	153267	rs6056599	T	C	.	.	HM3
+20	164083	rs6032887	T	C	.	.	HM3
+20	165832	rs13042281	G	T	.	.	HM3
+20	166824	rs6040142	G	A	.	.	HM3
+20	168241	rs13038380	G	A	.	.	HM3
+20	168466	rs4813042	T	A	.	.	HM3
+20	168728	rs4813043	T	A	.	.	HM3
+20	168781	rs35089290	G	T	.	.	HM3
+20	169701	rs722829	G	A	.	.	HM3
+20	169995	rs6040343	T	C	.	.	HM3
+20	170589	rs1469782	T	C	.	.	HM3
+20	170642	rs1469781	G	A	.	.	HM3
+20	171189	rs6078096	C	T	.	.	HM3
+20	171839	rs11905813	G	A	.	.	HM3
+20	178856	rs7269972	C	T	.	.	HM3
+20	181967	rs6041237	A	C	.	.	HM3
+20	182013	rs6078500	T	C	.	.	HM3
+20	186405	rs6078732	A	G	.	.	HM3
+20	188107	rs6109597	T	C	.	.	HM3
+20	188318	rs6109606	C	T	.	.	HM3
+20	189958	rs16994393	G	A	.	.	HM3
+20	191797	rs6074578	G	T	.	.	HM3
+20	192069	rs6074583	C	T	.	.	HM3
+20	193321	rs8124562	G	A	.	.	HM3
+20	196604	rs4813140	G	C	.	.	HM3
+20	197162	rs6110044	G	A	.	.	HM3
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+20	7123361	rs6140190	G	A	.	.	HM3
+20	7127831	rs6054767	C	G	.	.	HM3
+20	7129677	rs6054768	C	T	.	.	HM3
+20	7129738	rs6038724	T	C	.	.	HM3
+20	7131781	rs8116793	T	C	.	.	HM3
+20	7132239	rs1015357	T	C	.	.	HM3
+20	7132267	rs6117649	T	C	.	.	HM3
+20	7137757	rs6038729	A	C	.	.	HM3
+20	7142997	rs719563	G	A	.	.	HM3
+20	7149875	rs6117655	C	T	.	.	HM3
+20	7151968	rs179753	G	A	.	.	HM3
+20	7154211	rs179752	C	T	.	.	HM3
+20	7158086	rs179748	C	T	.	.	HM3
+20	7162079	rs6054787	G	A	.	.	HM3
+20	7164218	rs6054788	G	A	.	.	HM3
+20	7164725	rs6085916	G	A	.	.	HM3
+20	7164922	rs2326897	G	A	.	.	HM3
+20	7169791	rs6117669	G	A	.	.	HM3
+20	7170080	rs4815978	T	C	.	.	HM3
+20	7170215	rs6117670	C	G	.	.	HM3
+20	7171430	rs11698567	C	T	.	.	HM3
+20	7171612	rs17373665	T	C	.	.	HM3
+20	7172181	rs6117672	G	A	.	.	HM3
+20	7174295	rs16993130	A	G	.	.	HM3
+20	7174361	rs16993131	A	T	.	.	HM3
+20	7174578	rs13036410	A	C	.	.	HM3
+20	7179953	rs16993140	C	A	.	.	HM3
+20	7180056	rs6085920	T	A	.	.	HM3
+20	7181330	rs6133401	T	C	.	.	HM3
+20	7183410	rs2207585	T	C	.	.	HM3
+20	7184635	rs990654	T	G	.	.	HM3
+20	7191569	rs6054805	T	C	.	.	HM3
+20	7191960	rs6054806	C	T	.	.	HM3
+20	7198501	rs6054814	G	T	.	.	HM3
+20	7199413	rs724940	A	G	.	.	HM3
+20	7199666	rs6054815	A	T	.	.	HM3
+20	7199917	rs6140212	T	C	.	.	HM3
+20	7202442	rs6054823	T	C	.	.	HM3
+20	7207300	rs16993236	T	A	.	.	HM3
+20	7207387	rs4140471	T	C	.	.	HM3
+20	7209706	rs1546956	T	C	.	.	HM3
+20	7210137	rs2326905	T	C	.	.	HM3
+20	7211515	rs4813818	G	A	.	.	HM3
+20	7212442	rs6085933	T	C	.	.	HM3
+20	7214737	rs2064563	C	T	.	.	HM3
+20	7215966	rs6054837	C	A	.	.	HM3
+20	7216999	rs6054839	C	G	.	.	HM3
+20	7217235	rs2207598	A	T	.	.	HM3
+20	7217317	rs2207597	G	A	.	.	HM3
+20	7218508	rs1569863	C	T	.	.	HM3
+20	7220930	rs6085938	A	G	.	.	HM3
+20	7221843	rs932507	T	C	.	.	HM3
+20	7222314	rs6054842	A	G	.	.	HM3
+20	7225537	rs4813821	G	A	.	.	HM3
+20	7226248	rs720010	A	G	.	.	HM3
+20	7226483	rs6140226	C	T	.	.	HM3
+20	7227164	rs6085944	T	C	.	.	HM3
+20	7227887	rs6054845	G	T	.	.	HM3
+20	7230441	rs6054847	T	C	.	.	HM3
+20	7232828	rs6085947	G	A	.	.	HM3
+20	7233350	rs6085948	G	A	.	.	HM3
+20	7234184	rs2224054	C	A	.	.	HM3
+20	7235209	rs2207596	T	C	.	.	HM3
+20	7235474	rs7269875	A	G	.	.	HM3
+20	7238710	rs6117724	T	C	.	.	HM3
+20	7238994	rs6085955	G	C	.	.	HM3
+20	7239147	rs6054852	A	G	.	.	HM3
+20	7239640	rs2207595	C	T	.	.	HM3
+20	7240208	rs2009751	T	C	.	.	HM3
+20	7243540	rs6117726	T	C	.	.	HM3
+20	7245282	rs8123252	G	T	.	.	HM3
+20	7245652	rs6117727	T	A	.	.	HM3
+20	7245805	rs6117728	T	C	.	.	HM3
+20	7246069	rs7266720	A	G	.	.	HM3
+20	7247239	rs6054856	A	G	.	.	HM3
+20	7250002	rs926916	A	G	.	.	HM3
+20	7250293	rs6140236	T	C	.	.	HM3
+20	7250328	rs13045456	C	A	.	.	HM3
+20	7252261	rs16993306	C	T	.	.	HM3
+20	7252352	rs7275039	G	T	.	.	HM3
+20	7253336	rs13433290	A	G	.	.	HM3
+20	7253477	rs6107955	G	A	.	.	HM3
+20	7253500	rs6117734	C	T	.	.	HM3
+20	7254694	rs6054864	T	G	.	.	HM3
+20	7254807	rs4815988	T	C	.	.	HM3
+20	7256082	rs6085961	A	C	.	.	HM3
+20	7259925	rs10485715	T	C	.	.	HM3
+20	7260592	rs6085964	G	A	.	.	HM3
+20	7260616	rs6077177	T	C	.	.	HM3
+20	7261084	rs6054870	C	T	.	.	HM3
+20	7261645	rs16993325	C	A	.	.	HM3
+20	7261898	rs6038762	G	A	.	.	HM3
+20	7262340	rs12626140	C	A	.	.	HM3
+20	7263727	rs6117741	T	C	.	.	HM3
+20	7263956	rs6054874	A	C	.	.	HM3
+20	7264838	rs6054876	A	G	.	.	HM3
+20	7265038	rs6117744	A	C	.	.	HM3
+20	7265069	rs6117745	A	G	.	.	HM3
+20	7266086	rs6085968	G	A	.	.	HM3
+20	7266858	rs16993349	A	G	.	.	HM3
+20	7267231	rs13042416	G	T	.	.	HM3
+20	7271083	rs2180116	T	G	.	.	HM3
+20	7271214	rs6054883	A	G	.	.	HM3
+20	7271247	rs6054884	G	A	.	.	HM3
+20	7271288	rs6054885	A	G	.	.	HM3
+20	7272507	rs6085977	A	T	.	.	HM3
+20	7273182	rs977451	T	C	.	.	HM3
+20	7279387	rs6038769	G	A	.	.	HM3
+20	7282051	rs6085983	G	A	.	.	HM3
+20	7283182	rs2423186	T	C	.	.	HM3
+20	7284514	rs2423187	C	T	.	.	HM3
+20	7285837	rs16993390	A	G	.	.	HM3
+20	7286418	rs2423188	T	C	.	.	HM3
+20	7286974	rs6077183	G	A	.	.	HM3
+20	7287253	rs6085987	C	T	.	.	HM3
+20	7288268	rs2224050	C	T	.	.	HM3
+20	7288480	rs13042822	C	T	.	.	HM3
+20	7288812	rs6054901	C	T	.	.	HM3
+20	7289832	rs2423190	C	T	.	.	HM3
+20	7292267	rs6077184	A	C	.	.	HM3
+20	7292603	rs6516268	A	G	.	.	HM3
+20	7293040	rs6516269	G	T	.	.	HM3
+20	7293535	rs2423191	C	A	.	.	HM3
+20	7294903	rs6054906	G	A	.	.	HM3
+20	7294973	rs6054907	A	G	.	.	HM3
+20	7295118	rs6085991	T	G	.	.	HM3
+20	7297420	rs4813825	G	A	.	.	HM3
+20	7305220	rs6085999	T	A	.	.	HM3
+20	7305775	rs8114607	G	C	.	.	HM3
+20	7305932	rs8114707	G	A	.	.	HM3
+20	7306965	rs2224053	C	G	.	.	HM3
+20	7307816	rs721708	C	T	.	.	HM3
+20	7308538	rs16993414	T	C	.	.	HM3
+20	7309133	rs11907092	G	A	.	.	HM3
+20	7314888	rs16993424	C	T	.	.	HM3
+20	7315302	rs6038779	G	A	.	.	HM3
+20	7315936	rs17396700	G	C	.	.	HM3
+20	7315982	rs6054926	G	C	.	.	HM3
+20	7316676	rs6038781	A	C	.	.	HM3
+20	7317250	rs726699	C	T	.	.	HM3
+20	7320848	rs6054930	C	T	.	.	HM3
+20	7326701	rs971226	G	A	.	.	HM3
+20	7327572	rs6054932	A	T	.	.	HM3
+20	7327742	rs16993443	A	T	.	.	HM3
+20	7333647	rs2423196	T	A	.	.	HM3
+20	7333854	rs2423197	A	T	.	.	HM3
+20	7335161	rs2423201	G	A	.	.	HM3
+20	7335195	rs1160566	G	A	.	.	HM3
+20	7335207	rs2423202	T	G	.	.	HM3
+20	7337884	rs16993461	A	G	.	.	HM3
+20	7342895	rs2423214	T	G	.	.	HM3
+20	7348617	rs2423220	A	C	.	.	HM3
diff -r 000000000000 -r b001b50f2009 test-data/test.small.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test.small.vcf	Mon Jan 27 09:28:06 2014 -0500
@@ -0,0 +1,1000 @@
+##fileformat=VCFv4.0
+##fileDate=20110215
+##source=freeBayes version 0.4.1
+##reference=/d2/data/references/build_37/human_reference_v37.fa
+##phasing=none
+##commandline="/share/software/freebayes/bin/freebayes --stdin --no-filters --min-alternate-count 2 --posterior-integration-depth 100 --pvar 0.01 --vcf /d1/data/1000G/20101123/filteringTests/AFR/mosaik/noFilters/Pipeline/none//freebayes/freebayes.20:0-1000000.baq.20110210.vcf --fasta-reference /d2/data/references/build_37/human_reference_v37.fa --region 20:0..1000000"
+##vcfPytools=merge freebayes.20:0-1000000.baq.20110210.vcf, freebayes.20:1000000-2000000.baq.20110210.vcf, freebayes.20:2000000-3000000.baq.20110210.vcf, freebayes.20:3000000-4000000.baq.20110210.vcf, freebayes.20:4000000-5000000.baq.20110210.vcf, freebayes.20:5000000-6000000.baq.20110210.vcf, freebayes.20:6000000-7000000.baq.20110210.vcf, freebayes.20:7000000-8000000.baq.20110210.vcf, freebayes.20:8000000-9000000.baq.20110210.vcf, freebayes.20:9000000-10000000.baq.20110210.vcf, freebayes.20:10000000-11000000.baq.20110210.vcf, freebayes.20:11000000-12000000.baq.20110210.vcf, freebayes.20:12000000-13000000.baq.20110210.vcf, freebayes.20:13000000-14000000.baq.20110210.vcf, freebayes.20:14000000-15000000.baq.20110210.vcf, freebayes.20:15000000-16000000.baq.20110210.vcf, freebayes.20:16000000-17000000.baq.20110210.vcf, freebayes.20:17000000-18000000.baq.20110210.vcf, freebayes.20:18000000-19000000.baq.20110210.vcf, freebayes.20:19000000-20000000.baq.20110210.vcf, freebayes.20:20000000-21000000.baq.20110210.vcf, freebayes.20:21000000-22000000.baq.20110210.vcf, freebayes.20:22000000-23000000.baq.20110210.vcf, freebayes.20:23000000-24000000.baq.20110210.vcf, freebayes.20:24000000-25000000.baq.20110210.vcf, freebayes.20:25000000-26000000.baq.20110210.vcf, freebayes.20:26000000-27000000.baq.20110210.vcf, freebayes.20:27000000-28000000.baq.20110210.vcf, freebayes.20:28000000-29000000.baq.20110210.vcf, freebayes.20:29000000-30000000.baq.20110210.vcf, freebayes.20:30000000-31000000.baq.20110210.vcf, freebayes.20:31000000-32000000.baq.20110210.vcf, freebayes.20:32000000-33000000.baq.20110210.vcf, freebayes.20:33000000-34000000.baq.20110210.vcf, freebayes.20:34000000-35000000.baq.20110210.vcf, freebayes.20:35000000-36000000.baq.20110210.vcf, freebayes.20:36000000-37000000.baq.20110210.vcf, freebayes.20:37000000-38000000.baq.20110210.vcf, freebayes.20:38000000-39000000.baq.20110210.vcf, freebayes.20:39000000-40000000.baq.20110210.vcf, freebayes.20:40000000-41000000.baq.20110210.vcf, freebayes.20:41000000-42000000.baq.20110210.vcf, freebayes.20:42000000-43000000.baq.20110210.vcf, freebayes.20:43000000-44000000.baq.20110210.vcf, freebayes.20:44000000-45000000.baq.20110210.vcf, freebayes.20:45000000-46000000.baq.20110210.vcf, freebayes.20:46000000-47000000.baq.20110210.vcf, freebayes.20:47000000-48000000.baq.20110210.vcf, freebayes.20:48000000-49000000.baq.20110210.vcf, freebayes.20:49000000-50000000.baq.20110210.vcf, freebayes.20:50000000-51000000.baq.20110210.vcf, freebayes.20:51000000-52000000.baq.20110210.vcf, freebayes.20:52000000-53000000.baq.20110210.vcf, freebayes.20:53000000-54000000.baq.20110210.vcf, freebayes.20:54000000-55000000.baq.20110210.vcf, freebayes.20:55000000-56000000.baq.20110210.vcf, freebayes.20:56000000-57000000.baq.20110210.vcf, freebayes.20:57000000-58000000.baq.20110210.vcf, freebayes.20:58000000-59000000.baq.20110210.vcf, freebayes.20:59000000-60000000.baq.20110210.vcf, freebayes.20:60000000-61000000.baq.20110210.vcf, freebayes.20:61000000-62000000.baq.20110210.vcf, freebayes.20:62000000-63000000.baq.20110210.vcf, freebayes.20:63000000-63025520.baq.20110210.vcf
+##vcfPytools=
+##INFO=<ID=AB,Number=1,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
+##INFO=<ID=DEL,Number=1,Type=Integer,Description="Length of deletion allele, if present">
+##INFO=<ID=CpG,Number=0,Type=Flag,Description="CpG site (either CpG, TpG or CpA)">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
+##INFO=<ID=TV,Number=0,Type=Flag,Description="transversion SNP">
+##INFO=<ID=TS,Number=0,Type=Flag,Description="transition SNP">
+##INFO=<ID=RA,Number=1,Type=Integer,Description="Reference allele observations">
+##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
+##INFO=<ID=AA,Number=1,Type=Integer,Description="Alternate allele observations">
+##INFO=<ID=ABA,Number=1,Type=Integer,Description="Alternate allele balance count: the number of sequence reads from apparent heterozygotes supporting the alternate allele">
+##INFO=<ID=AC,Number=1,Type=Integer,Description="Total number of alternate alleles in called genotypes">
+##INFO=<ID=REPEAT,Number=1,Type=String,Description="Description of the local repeat structures flanking the current position">
+##INFO=<ID=AF,Number=1,Type=Float,Description="Estimated allele frequency in the range (0,1]">
+##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
+##INFO=<ID=ABR,Number=1,Type=Integer,Description="Reference allele balance count: the number of sequence reads from apparent heterozygotes supporting the reference allele">
+##INFO=<ID=RUN,Number=1,Type=Integer,Description="Homopolymer run length: the number of consecutive nucleotides in the reference genome matching the alternate allele prior to the current position">
+##INFO=<ID=SR,Number=1,Type=Integer,Description="Number of reference observations by strand, delimited by |: [forward]|[reverse]">
+##INFO=<ID=INS,Number=1,Type=Integer,Description="Length of insertion allele, if present">
+##INFO=<ID=MNP,Number=0,Type=Integer,Description="Length of MNP allele, if present">
+##INFO=<ID=SNP,Number=0,Type=Flag,Description="SNP allele">
+##INFO=<ID=SB,Number=1,Type=Float,Description="Strand bias for the alternate allele: a number between 0 and 1 representing the ratio of forward strand sequence reads showing the alternate allele to all reads, considering only reads from individuals called as heterozygous">
+##INFO=<ID=SA,Number=1,Type=Integer,Description="Number of alternate observations by strand, delimited by |: [forward]|[reverse]">
+##FORMAT=<ID=AA,Number=1,Type=Integer,Description="Alternate allele observations">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=SR,Number=1,Type=Integer,Description="Number of reference observations by strand, delimited by |: [forward]|[reverse]">
+##FORMAT=<ID=RA,Number=1,Type=Integer,Description="Reference allele observations">
+##FORMAT=<ID=SA,Number=1,Type=Integer,Description="Number of alternate observations by strand, delimited by |: [forward]|[reverse]">
+##FORMAT=<ID=GL,Number=1,Type=Float,Description="Genotype Likelihood">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
+20	60479	.	C	T	75.2	PASS	NS=368;DP=2111;AC=4;AN=736;AF=0.0054348;RA=2096;AA=9;SR=1153|943;SA=5|4;SB=0.55556;AB=0.47059;ABR=8;ABA=9;RUN=2;SNP;TS
+20	60571	.	C	A	99.0	PASS	NS=366;DP=2338;AC=6;AN=732;AF=0.0081967;RA=2293;AA=30;SR=1123|1170;SA=19|11;SB=0.63333;AB=0.51515;ABR=17;ABA=16;RUN=1;SNP;TV
+20	60828	.	T	G	8.94	PASS	NS=361;DP=2341;AC=3;AN=722;AF=0.0041551;RA=2267;AA=30;SR=1101|1166;SA=15|15;SB=0.5;AB=0.16667;ABR=1;ABA=4;RUN=3;SNP;TV
+20	61098	.	C	T	99.0	PASS	NS=366;DP=1780;AC=140;AN=732;AF=0.19126;RA=1457;AA=317;SR=600|857;SA=132|185;SB=0.4164;AB=0.56587;ABR=262;ABA=198;RUN=2;SNP;TS
+20	61270	.	A	C	1.01	PASS	NS=220;DP=449;AC=18;AN=440;AF=0.040909;RA=423;AA=23;SR=165|258;SA=6|17;SB=0.26087;AB=0.61111;ABR=11;ABA=7;RUN=1;SNP;TV
+20	61388	.	T	C	46.6	PASS	NS=314;DP=1036;AC=2;AN=628;AF=0.0031847;RA=1025;AA=6;SR=709|316;SA=2|4;SB=0.33333;AB=0.5;ABR=5;ABA=5;RUN=1;SNP;TS
+20	61409	.	A	G	36.0	PASS	NS=340;DP=1212;AC=1;AN=680;AF=0.0014706;RA=1207;AA=4;SR=876|331;SA=2|2;SB=0.5;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS
+20	61517	.	C	T	13.8	PASS	NS=363;DP=2032;AC=1;AN=726;AF=0.0013774;RA=2019;AA=7;SR=1200|819;SA=7|0;SB=1;AB=0.72727;ABR=8;ABA=3;RUN=4;SNP;TS
+20	61535	.	A	G	0.0666	PASS	NS=362;DP=2048;AC=1;AN=724;AF=0.0013812;RA=2037;AA=4;SR=1150|887;SA=3|1;SB=0.75;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	61586	.	C	A	0.0941	PASS	NS=362;DP=1953;AC=1;AN=724;AF=0.0013812;RA=1941;AA=6;SR=1062|879;SA=3|3;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	61651	.	C	A	99.0	PASS	NS=369;DP=2217;AC=6;AN=738;AF=0.0081301;RA=2190;AA=22;SR=1230|960;SA=12|10;SB=0.54545;AB=0.41176;ABR=14;ABA=20;RUN=4;SNP;TV
+20	61724	.	A	C	99.0	PASS	NS=369;DP=2442;AC=6;AN=738;AF=0.0081301;RA=2409;AA=29;SR=1205|1204;SA=16|13;SB=0.55172;AB=0.48889;ABR=22;ABA=23;RUN=2;SNP;TV
+20	61795	.	G	T	99.0	PASS	NS=368;DP=2464;AC=324;AN=736;AF=0.44022;RA=1426;AA=1032;SR=740|686;SA=519|513;SB=0.50291;AB=0.49956;ABR=568;ABA=565;RUN=1;SNP;TV
+20	61807	.	G	T	16.2	PASS	NS=369;DP=2523;AC=2;AN=738;AF=0.00271;RA=2506;AA=7;SR=1311|1195;SA=4|3;SB=0.57143;AB=0.625;ABR=5;ABA=3;RUN=1;SNP;TV
+20	61848	.	A	G	0.0723	PASS	NS=370;DP=2478;AC=1;AN=740;AF=0.0013514;RA=2458;AA=9;SR=1313|1145;SA=2|7;SB=0.22222;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TS;CpG
+20	61909	.	C	G	0.224	PASS	NS=366;DP=2253;AC=1;AN=732;AF=0.0013661;RA=2240;AA=4;SR=1131|1109;SA=1|3;SB=0.25;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	61986	.	G	A	0.054	PASS	NS=364;DP=2106;AC=1;AN=728;AF=0.0013736;RA=2072;AA=26;SR=906|1166;SA=0|26;SB=0;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	62100	.	T	C	82.3	PASS	NS=363;DP=2082;AC=3;AN=726;AF=0.0041322;RA=2069;AA=8;SR=1052|1017;SA=2|6;SB=0.25;AB=0.5;ABR=7;ABA=7;RUN=1;SNP;TS
+20	62255	.	T	C	99.0	PASS	NS=361;DP=2204;AC=1;AN=722;AF=0.001385;RA=2195;AA=6;SR=1247|948;SA=6|0;SB=1;AB=0.57143;ABR=8;ABA=6;RUN=1;SNP;TS
+20	62348	.	A	G	99.0	PASS	NS=350;DP=1861;AC=2;AN=700;AF=0.0028571;RA=1845;AA=10;SR=949|896;SA=3|7;SB=0.3;AB=0.23077;ABR=3;ABA=10;RUN=1;SNP;TS
+20	62420	.	A	G	46.8	PASS	NS=364;DP=1821;AC=1;AN=728;AF=0.0013736;RA=1812;AA=3;SR=933|879;SA=0|3;SB=0;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS
+20	62471	.	G	A	43.6	PASS	NS=350;DP=1782;AC=2;AN=700;AF=0.0028571;RA=1772;AA=7;SR=891|881;SA=3|4;SB=0.42857;AB=0.69231;ABR=9;ABA=4;RUN=1;SNP;TS;CpG
+20	62530	.	A	G	1.17	PASS	NS=364;DP=2137;AC=1;AN=728;AF=0.0013736;RA=2129;AA=4;SR=1034|1095;SA=1|3;SB=0.25;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	62545	.	C	G	99.0	PASS	NS=348;DP=2043;AC=5;AN=696;AF=0.0071839;RA=2018;AA=17;SR=907|1111;SA=9|8;SB=0.52941;AB=0.44828;ABR=13;ABA=16;RUN=1;SNP;TV
+20	62553	.	T	C	0.193	PASS	NS=345;DP=2009;AC=2;AN=690;AF=0.0028986;RA=1986;AA=5;SR=869|1117;SA=3|2;SB=0.6;AB=0.76923;ABR=10;ABA=3;RUN=2;SNP;TS
+20	62673	.	G	T	0.556	PASS	NS=359;DP=2225;AC=1;AN=718;AF=0.0013928;RA=2218;AA=5;SR=1217|1001;SA=2|3;SB=0.4;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	62727	.	C	T	8.51	PASS	NS=347;DP=1801;AC=1;AN=694;AF=0.0014409;RA=1794;AA=2;SR=906|888;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	62731	.	C	A	99.0	PASS	NS=345;DP=1727;AC=22;AN=690;AF=0.031884;RA=1666;AA=55;SR=840|826;SA=26|29;SB=0.47273;AB=0.53061;ABR=52;ABA=46;RUN=2;SNP;TV
+20	62739	.	T	C	7.0	PASS	NS=342;DP=1646;AC=1;AN=684;AF=0.001462;RA=1623;AA=7;SR=812|811;SA=5|2;SB=0.71429;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	62770	.	G	C	3.33	PASS	NS=324;DP=1429;AC=1;AN=648;AF=0.0015432;RA=1422;AA=3;SR=655|767;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	62783	.	A	G	17.3	PASS	NS=328;DP=1471;AC=1;AN=656;AF=0.0015244;RA=1455;AA=8;SR=665|790;SA=4|4;SB=0.5;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TS
+20	62881	.	G	T	0.253	PASS	NS=345;DP=1772;AC=1;AN=690;AF=0.0014493;RA=1761;AA=7;SR=910|851;SA=3|4;SB=0.42857;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	62946	.	T	A	83.9	PASS	NS=349;DP=1880;AC=1;AN=698;AF=0.0014327;RA=1868;AA=5;SR=787|1081;SA=3|2;SB=0.6;AB=0.58333;ABR=7;ABA=5;RUN=2;SNP;TV
+20	62997	.	A	T	5.74	PASS	NS=364;DP=2195;AC=1;AN=728;AF=0.0013736;RA=2190;AA=2;SR=1042|1148;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	63054	.	A	G	48.5	PASS	NS=364;DP=2097;AC=3;AN=728;AF=0.0041209;RA=2082;AA=8;SR=1090|992;SA=5|3;SB=0.625;AB=0.52941;ABR=9;ABA=8;RUN=2;SNP;TS
+20	63055	.	A	G	0.234	PASS	NS=362;DP=2088;AC=1;AN=724;AF=0.0013812;RA=2078;AA=4;SR=1096|982;SA=2|2;SB=0.5;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	63063	.	T	C	0.0841	PASS	NS=363;DP=2065;AC=1;AN=726;AF=0.0013774;RA=2059;AA=2;SR=1083|976;SA=1|1;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	63141	.	T	C	2.61	PASS	NS=360;DP=1900;AC=1;AN=720;AF=0.0013889;RA=1891;AA=2;SR=1041|850;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	63197	.	T	A	0.305	PASS	NS=364;DP=2047;AC=1;AN=728;AF=0.0013736;RA=2037;AA=5;SR=1067|970;SA=1|4;SB=0.2;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TV
+20	63231	.	T	G	99.0	PASS	NS=360;DP=2025;AC=76;AN=720;AF=0.10556;RA=1828;AA=186;SR=914|914;SA=102|84;SB=0.54839;AB=0.52581;ABR=163;ABA=145;RUN=1;SNP;TV
+20	63244	.	A	C	99.0	PASS	NS=364;DP=1991;AC=84;AN=728;AF=0.11538;RA=1701;AA=284;SR=871|830;SA=132|152;SB=0.46479;AB=0.46951;ABR=154;ABA=174;RUN=2;SNP;TV
+20	63245	.	C	A	4.67	PASS	NS=364;DP=2000;AC=1;AN=728;AF=0.0013736;RA=1990;AA=6;SR=1010|980;SA=3|3;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TV
+20	63351	.	A	G	30.7	PASS	NS=369;DP=2363;AC=1;AN=738;AF=0.001355;RA=2354;AA=5;SR=1414|940;SA=4|1;SB=0.8;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TS
+20	63360	.	C	T	38.4	PASS	NS=367;DP=2348;AC=2;AN=734;AF=0.0027248;RA=2334;AA=4;SR=1363|971;SA=0|4;SB=0;AB=0.63636;ABR=7;ABA=4;RUN=1;SNP;TS
+20	63426	.	G	T	99.0	PASS	NS=369;DP=2178;AC=5;AN=738;AF=0.0067751;RA=2146;AA=17;SR=1263|883;SA=8|9;SB=0.47059;AB=0.69231;ABR=27;ABA=12;RUN=1;SNP;TV
+20	63452	.	C	G	99.0	PASS	NS=369;DP=2242;AC=22;AN=738;AF=0.02981;RA=2169;AA=68;SR=1220|949;SA=40|28;SB=0.58824;AB=0.47321;ABR=53;ABA=59;RUN=1;SNP;TV
+20	63466	.	A	G	0.305	PASS	NS=369;DP=2343;AC=1;AN=738;AF=0.001355;RA=2334;AA=3;SR=1290|1044;SA=1|2;SB=0.33333;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	63521	.	G	A	33.5	PASS	NS=370;DP=2387;AC=1;AN=740;AF=0.0013514;RA=2376;AA=3;SR=1217|1159;SA=2|1;SB=0.66667;AB=0.33333;ABR=2;ABA=3;RUN=1;SNP;TS
+20	63680	.	A	G	0.841	PASS	NS=371;DP=2758;AC=1;AN=742;AF=0.0013477;RA=2741;AA=5;SR=1422|1319;SA=3|2;SB=0.6;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS;CpG
+20	63733	.	C	T	99.0	PASS	NS=366;DP=2571;AC=58;AN=732;AF=0.079235;RA=2363;AA=200;SR=1311|1052;SA=101|99;SB=0.505;AB=0.50291;ABR=173;ABA=171;RUN=1;SNP;TS;CpG
+20	63746	.	C	T	0.0651	PASS	NS=369;DP=2564;AC=1;AN=738;AF=0.001355;RA=2552;AA=3;SR=1391|1161;SA=2|1;SB=0.66667;AB=0.84615;ABR=11;ABA=2;RUN=1;SNP;TS
+20	63799	.	C	T	99.0	PASS	NS=367;DP=2322;AC=331;AN=734;AF=0.45095;RA=1274;AA=1026;SR=610|664;SA=489|537;SB=0.47661;AB=0.53157;ABR=564;ABA=494;RUN=3;SNP;TS
+20	63808	.	G	C	99.0	PASS	NS=368;DP=2352;AC=61;AN=736;AF=0.08288;RA=2168;AA=171;SR=1043|1125;SA=80|91;SB=0.46784;AB=0.56869;ABR=178;ABA=134;RUN=1;SNP;TV
+20	63967	.	A	G	99.0	PASS	NS=370;DP=2363;AC=21;AN=740;AF=0.028378;RA=2276;AA=68;SR=911|1365;SA=26|42;SB=0.38235;AB=0.48837;ABR=63;ABA=66;RUN=1;SNP;TS
+20	63983	.	C	T	0.569	PASS	NS=371;DP=2349;AC=1;AN=742;AF=0.0013477;RA=2334;AA=3;SR=892|1442;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	64016	.	G	A	32.3	PASS	NS=370;DP=2259;AC=1;AN=740;AF=0.0013514;RA=2231;AA=15;SR=854|1377;SA=1|14;SB=0.066667;AB=0.5;ABR=3;ABA=3;RUN=2;SNP;TS
+20	64062	.	G	A	62.0	PASS	NS=370;DP=2274;AC=1;AN=740;AF=0.0013514;RA=2264;AA=6;SR=953|1311;SA=3|3;SB=0.5;AB=0.14286;ABR=1;ABA=6;RUN=3;SNP;TS
+20	64150	.	C	A	99.0	PASS	NS=368;DP=2268;AC=38;AN=736;AF=0.05163;RA=2160;AA=103;SR=881|1279;SA=41|62;SB=0.39806;AB=0.545;ABR=109;ABA=90;RUN=1;SNP;TV
+20	64175	.	A	G	97.6	PASS	NS=369;DP=2213;AC=1;AN=738;AF=0.001355;RA=2192;AA=10;SR=838|1354;SA=3|7;SB=0.3;AB=0.22222;ABR=2;ABA=7;RUN=3;SNP;TS
+20	64186	.	C	G	99.0	PASS	NS=369;DP=2166;AC=4;AN=738;AF=0.0054201;RA=2111;AA=20;SR=858|1253;SA=9|11;SB=0.45;AB=0.5;ABR=12;ABA=12;RUN=1;SNP;TV
+20	64539	.	A	T	0.0711	PASS	NS=352;DP=1674;AC=1;AN=704;AF=0.0014205;RA=1667;AA=4;SR=856|811;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=5;SNP;TV
+20	64560	.	A	G	0.0799	PASS	NS=358;DP=1831;AC=1;AN=716;AF=0.0013966;RA=1824;AA=4;SR=1057|767;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	64568	.	A	C	1.98	PASS	NS=355;DP=1856;AC=1;AN=710;AF=0.0014085;RA=1842;AA=7;SR=1124|718;SA=5|2;SB=0.71429;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	64587	.	A	G	1.36	PASS	NS=357;DP=1971;AC=1;AN=714;AF=0.0014006;RA=1963;AA=3;SR=1234|729;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	64597	.	T	C	0.152	PASS	NS=359;DP=1981;AC=1;AN=718;AF=0.0013928;RA=1974;AA=3;SR=1238|736;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	64618	.	G	A	0.794	PASS	NS=361;DP=2018;AC=1;AN=722;AF=0.001385;RA=2011;AA=3;SR=1263|748;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=4;SNP;TS
+20	64624	.	T	C	5.08	PASS	NS=364;DP=2000;AC=1;AN=728;AF=0.0013736;RA=1994;AA=3;SR=1238|756;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	64625	.	A	G	99.0	PASS	NS=363;DP=1995;AC=1;AN=726;AF=0.0013774;RA=1980;AA=7;SR=1229|751;SA=6|1;SB=0.85714;AB=0.5;ABR=5;ABA=5;RUN=1;SNP;TS
+20	64647	.	T	C	0.188	PASS	NS=362;DP=1911;AC=1;AN=724;AF=0.0013812;RA=1899;AA=5;SR=1157|742;SA=3|2;SB=0.6;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	64656	.	C	T	2.15	PASS	NS=368;DP=1875;AC=1;AN=736;AF=0.0013587;RA=1866;AA=3;SR=1113|753;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	64672	.	T	C	48.3	PASS	NS=365;DP=1877;AC=1;AN=730;AF=0.0013699;RA=1869;AA=5;SR=1097|772;SA=3|2;SB=0.6;AB=0.375;ABR=3;ABA=5;RUN=1;SNP;TS
+20	64771	.	A	G	0.563	PASS	NS=365;DP=2023;AC=1;AN=730;AF=0.0013699;RA=2017;AA=2;SR=1315|702;SA=1|1;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TS
+20	64898	.	G	A	49.7	PASS	NS=371;DP=2342;AC=1;AN=742;AF=0.0013477;RA=2329;AA=7;SR=1249|1080;SA=3|4;SB=0.42857;AB=0.14286;ABR=1;ABA=6;RUN=1;SNP;TS
+20	64913	.	G	T	0.846	PASS	NS=370;DP=2344;AC=1;AN=740;AF=0.0013514;RA=2333;AA=5;SR=1234|1099;SA=1|4;SB=0.2;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TV
+20	65122	.	T	C	1.23	PASS	NS=368;DP=2280;AC=1;AN=736;AF=0.0013587;RA=2265;AA=3;SR=976|1289;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	65173	.	C	G	12.2	PASS	NS=370;DP=2118;AC=1;AN=740;AF=0.0013514;RA=2104;AA=4;SR=947|1157;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	65240	.	G	A	89.4	PASS	NS=364;DP=2106;AC=2;AN=728;AF=0.0027473;RA=2087;AA=8;SR=941|1146;SA=0|8;SB=0;AB=0.25;ABR=2;ABA=6;RUN=1;SNP;TS
+20	65241	.	T	C	0.371	PASS	NS=364;DP=2101;AC=1;AN=728;AF=0.0013736;RA=2087;AA=8;SR=934|1153;SA=7|1;SB=0.875;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	65288	.	G	T	99.0	PASS	NS=364;DP=2003;AC=21;AN=728;AF=0.028846;RA=1924;AA=76;SR=915|1009;SA=29|47;SB=0.38158;AB=0.4963;ABR=67;ABA=68;RUN=1;SNP;TV
+20	65317	.	A	C	0.0806	PASS	NS=365;DP=1967;AC=1;AN=730;AF=0.0013699;RA=1957;AA=4;SR=954|1003;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	65335	.	T	G	99.0	PASS	NS=363;DP=1773;AC=12;AN=726;AF=0.016529;RA=1744;AA=22;SR=831|913;SA=11|11;SB=0.5;AB=0.46875;ABR=15;ABA=17;RUN=1;SNP;TV
+20	65338	.	A	T	0.813	PASS	NS=362;DP=1726;AC=1;AN=724;AF=0.0013812;RA=1715;AA=3;SR=799|916;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	65562	.	A	G	6.8	PASS	NS=325;DP=1375;AC=2;AN=650;AF=0.0030769;RA=1343;AA=4;SR=759|584;SA=2|2;SB=0.5;AB=0.7;ABR=7;ABA=3;RUN=1;SNP;TS
+20	65578	.	T	C	3.24	PASS	NS=327;DP=1379;AC=1;AN=654;AF=0.0015291;RA=1375;AA=3;SR=790|585;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	65632	.	C	T	40.9	PASS	NS=366;DP=1714;AC=1;AN=732;AF=0.0013661;RA=1703;AA=5;SR=918|785;SA=3|2;SB=0.6;AB=0.2;ABR=1;ABA=4;RUN=1;SNP;TS
+20	65850	.	G	A	0.111	PASS	NS=307;DP=1146;AC=1;AN=614;AF=0.0016287;RA=1128;AA=3;SR=696|432;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	65900	.	G	A	99.0	PASS	NS=325;DP=1412;AC=530;AN=650;AF=0.81538;RA=271;AA=1129;SR=145|126;SA=639|490;SB=0.56599;AB=0.47594;ABR=178;ABA=193;RUN=1;SNP;TS;CpG
+20	65986	.	G	A	8.36	PASS	NS=370;DP=2269;AC=3;AN=740;AF=0.0040541;RA=2255;AA=6;SR=1197|1058;SA=2|4;SB=0.33333;AB=0;ABR=0;ABA=2;RUN=2;SNP;TS
+20	66029	.	T	C	0.101	PASS	NS=339;DP=1544;AC=1;AN=678;AF=0.0014749;RA=1526;AA=7;SR=748|778;SA=6|1;SB=0.85714;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	66060	.	C	T	6.42	PASS	NS=324;DP=1304;AC=1;AN=648;AF=0.0015432;RA=1297;AA=3;SR=613|684;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	66248	.	C	T	12.0	PASS	NS=288;DP=1080;AC=1;AN=576;AF=0.0017361;RA=1074;AA=2;SR=440|634;SA=2|0;SB=1;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	66370	.	G	A	99.0	PASS	NS=262;DP=824;AC=404;AN=524;AF=0.77099;RA=185;AA=629;SR=79|106;SA=267|362;SB=0.42448;AB=0.55801;ABR=101;ABA=79;RUN=1;SNP;TS
+20	66388	.	C	T	0.809	PASS	NS=269;DP=809;AC=1;AN=538;AF=0.0018587;RA=798;AA=3;SR=351|447;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	66620	.	C	T	2.19	PASS	NS=338;DP=1326;AC=1;AN=676;AF=0.0014793;RA=1319;AA=3;SR=634|685;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=4;SNP;TS
+20	66705	.	C	T	4.94	PASS	NS=292;DP=835;AC=8;AN=584;AF=0.013699;RA=819;AA=10;SR=483|336;SA=3|7;SB=0.3;AB=0.5;ABR=6;ABA=6;RUN=1;SNP;TS
+20	66890	.	G	T	6.54	PASS	NS=313;DP=1102;AC=1;AN=626;AF=0.0015974;RA=1097;AA=4;SR=670|427;SA=3|1;SB=0.75;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	67080	.	A	G	0.371	PASS	NS=355;DP=1745;AC=1;AN=710;AF=0.0014085;RA=1732;AA=4;SR=907|825;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	67421	.	A	C	0.0555	PASS	NS=363;DP=1999;AC=1;AN=726;AF=0.0013774;RA=1990;AA=6;SR=945|1045;SA=4|2;SB=0.66667;AB=0.5;ABR=1;ABA=1;RUN=1;SNP;TV
+20	67461	.	A	G	99.0	PASS	NS=357;DP=1894;AC=4;AN=714;AF=0.0056022;RA=1872;AA=14;SR=841|1031;SA=8|6;SB=0.57143;AB=0.5;ABR=13;ABA=13;RUN=2;SNP;TS;CpG
+20	67563	.	A	G	3.64	PASS	NS=360;DP=1912;AC=1;AN=720;AF=0.0013889;RA=1904;AA=4;SR=1033|871;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TS
+20	67572	.	A	T	0.0602	PASS	NS=363;DP=1887;AC=1;AN=726;AF=0.0013774;RA=1871;AA=6;SR=1028|843;SA=1|5;SB=0.16667;AB=0.5;ABR=1;ABA=1;RUN=2;SNP;TV
+20	67573	.	C	T	4.67	PASS	NS=364;DP=1888;AC=1;AN=728;AF=0.0013736;RA=1878;AA=6;SR=1028|850;SA=3|3;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	67641	.	C	T	99.0	PASS	NS=364;DP=1910;AC=23;AN=728;AF=0.031593;RA=1837;AA=67;SR=897|940;SA=35|32;SB=0.52239;AB=0.52679;ABR=59;ABA=53;RUN=1;SNP;TS
+20	67644	.	T	C	40.4	PASS	NS=365;DP=1899;AC=2;AN=730;AF=0.0027397;RA=1887;AA=9;SR=933|954;SA=4|5;SB=0.44444;AB=0.44444;ABR=4;ABA=5;RUN=1;SNP;TS;CpG
+20	67646	.	G	A	3.98	PASS	NS=365;DP=1897;AC=1;AN=730;AF=0.0013699;RA=1877;AA=6;SR=923|954;SA=2|4;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	67752	.	T	A	0.292	PASS	NS=367;DP=2181;AC=2;AN=734;AF=0.0027248;RA=2163;AA=6;SR=1201|962;SA=3|3;SB=0.5;AB=0.82353;ABR=14;ABA=3;RUN=2;SNP;TV
+20	67760	.	C	T	67.6	PASS	NS=367;DP=2169;AC=1;AN=734;AF=0.0013624;RA=2152;AA=5;SR=1181|971;SA=2|3;SB=0.4;AB=0.33333;ABR=2;ABA=4;RUN=1;SNP;TS;CpG
+20	67765	.	C	T	99.0	PASS	NS=369;DP=2200;AC=3;AN=738;AF=0.004065;RA=2178;AA=11;SR=1201|977;SA=6|5;SB=0.54545;AB=0.42857;ABR=6;ABA=8;RUN=1;SNP;TS;CpG
+20	67831	.	C	T	0.781	PASS	NS=371;DP=2294;AC=1;AN=742;AF=0.0013477;RA=2281;AA=5;SR=1237|1044;SA=2|3;SB=0.4;AB=0;ABR=0;ABA=2;RUN=4;SNP;TS
+20	67949	.	G	T	10.4	PASS	NS=366;DP=2315;AC=1;AN=732;AF=0.0013661;RA=2282;AA=12;SR=1321|961;SA=2|10;SB=0.16667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	67976	.	T	A	0.679	PASS	NS=369;DP=2408;AC=1;AN=738;AF=0.001355;RA=2397;AA=6;SR=1299|1098;SA=2|4;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	68015	.	C	T	0.113	PASS	NS=369;DP=2466;AC=1;AN=738;AF=0.001355;RA=2453;AA=5;SR=1313|1140;SA=3|2;SB=0.6;AB=0.875;ABR=14;ABA=2;RUN=2;SNP;TS
+20	68055	.	A	G	0.102	PASS	NS=370;DP=2540;AC=1;AN=740;AF=0.0013514;RA=2522;AA=5;SR=1296|1226;SA=4|1;SB=0.8;AB=0.86667;ABR=13;ABA=2;RUN=1;SNP;TS
+20	68075	.	T	C	0.0657	PASS	NS=370;DP=2582;AC=1;AN=740;AF=0.0013514;RA=2562;AA=8;SR=1291|1271;SA=5|3;SB=0.625;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	68123	.	C	A	0.0592	PASS	NS=369;DP=2705;AC=1;AN=738;AF=0.001355;RA=2685;AA=13;SR=1300|1385;SA=11|2;SB=0.84615;AB=0.8;ABR=4;ABA=1;RUN=1;SNP;TV
+20	68182	.	A	T	99.0	PASS	NS=368;DP=2675;AC=2;AN=736;AF=0.0027174;RA=2653;AA=10;SR=1458|1195;SA=6|4;SB=0.6;AB=0.2;ABR=2;ABA=8;RUN=2;SNP;TV
+20	68190	.	T	C	0.109	PASS	NS=368;DP=2678;AC=1;AN=736;AF=0.0013587;RA=2661;AA=5;SR=1481|1180;SA=3|2;SB=0.6;AB=0.83333;ABR=10;ABA=2;RUN=3;SNP;TS
+20	68205	.	A	G	31.9	PASS	NS=369;DP=2686;AC=1;AN=738;AF=0.001355;RA=2672;AA=6;SR=1492|1180;SA=2|4;SB=0.33333;AB=0.57143;ABR=4;ABA=3;RUN=1;SNP;TS
+20	68264	.	T	C	99.0	PASS	NS=369;DP=2558;AC=98;AN=738;AF=0.13279;RA=2173;AA=376;SR=1055|1118;SA=202|174;SB=0.53723;AB=0.48951;ABR=280;ABA=292;RUN=1;SNP;TS
+20	68474	.	A	G	31.0	PASS	NS=370;DP=2532;AC=2;AN=740;AF=0.0027027;RA=2507;AA=14;SR=1171|1336;SA=2|12;SB=0.14286;AB=0.58333;ABR=7;ABA=5;RUN=1;SNP;TS
+20	68505	.	A	G	0.483	PASS	NS=369;DP=2490;AC=1;AN=738;AF=0.001355;RA=2477;AA=3;SR=1140|1337;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	68535	.	G	A	99.0	PASS	NS=369;DP=2573;AC=12;AN=738;AF=0.01626;RA=2503;AA=58;SR=1186|1317;SA=32|26;SB=0.55172;AB=0.50893;ABR=57;ABA=55;RUN=1;SNP;TS
+20	68618	.	G	A	99.0	PASS	NS=368;DP=2561;AC=21;AN=736;AF=0.028533;RA=2451;AA=93;SR=1224|1227;SA=48|45;SB=0.51613;AB=0.45517;ABR=66;ABA=78;RUN=1;SNP;TS
+20	68657	.	C	A	3.85	PASS	NS=370;DP=2602;AC=1;AN=740;AF=0.0013514;RA=2585;AA=9;SR=1214|1371;SA=6|3;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	68660	.	C	A	99.0	PASS	NS=370;DP=2608;AC=2;AN=740;AF=0.0027027;RA=2591;AA=14;SR=1221|1370;SA=8|6;SB=0.57143;AB=0.44;ABR=11;ABA=14;RUN=2;SNP;TV
+20	68664	.	A	C	0.0666	PASS	NS=370;DP=2602;AC=1;AN=740;AF=0.0013514;RA=2571;AA=12;SR=1212|1359;SA=6|6;SB=0.5;AB=0.5;ABR=1;ABA=1;RUN=1;SNP;TV
+20	68667	.	T	G	99.0	PASS	NS=370;DP=2607;AC=2;AN=740;AF=0.0027027;RA=2584;AA=15;SR=1201|1383;SA=5|10;SB=0.33333;AB=0.41176;ABR=7;ABA=10;RUN=2;SNP;TV
+20	68749	.	T	C	99.0	PASS	NS=368;DP=2323;AC=426;AN=736;AF=0.5788;RA=983;AA=1334;SR=457|526;SA=640|694;SB=0.47976;AB=0.47215;ABR=568;ABA=632;RUN=1;SNP;TS;CpG
+20	68799	.	T	C	1.55	PASS	NS=367;DP=2269;AC=2;AN=734;AF=0.0027248;RA=2213;AA=15;SR=1064|1149;SA=14|1;SB=0.93333;AB=0.66667;ABR=8;ABA=4;RUN=1;SNP;TS
+20	68815	.	C	T	0.275	PASS	NS=367;DP=2245;AC=1;AN=734;AF=0.0013624;RA=2226;AA=3;SR=1051|1175;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	68826	.	A	T	2.17	PASS	NS=370;DP=2244;AC=1;AN=740;AF=0.0013514;RA=2223;AA=5;SR=1043|1180;SA=4|1;SB=0.8;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	68926	.	T	C	0.43	PASS	NS=369;DP=2139;AC=2;AN=738;AF=0.00271;RA=2120;AA=4;SR=904|1216;SA=1|3;SB=0.25;AB=0.61538;ABR=8;ABA=3;RUN=1;SNP;TS
+20	68975	.	C	G	1.62	PASS	NS=367;DP=2121;AC=1;AN=734;AF=0.0013624;RA=2105;AA=4;SR=767|1338;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	68987	.	G	T	2.55	PASS	NS=369;DP=2074;AC=1;AN=738;AF=0.001355;RA=2059;AA=8;SR=732|1327;SA=3|5;SB=0.375;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	69049	.	T	A	0.201	PASS	NS=361;DP=2045;AC=1;AN=722;AF=0.001385;RA=2038;AA=5;SR=936|1102;SA=2|3;SB=0.4;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TV
+20	69066	.	C	G	14.2	PASS	NS=360;DP=2078;AC=3;AN=720;AF=0.0041667;RA=2069;AA=8;SR=1074|995;SA=1|7;SB=0.125;AB=0.45455;ABR=5;ABA=6;RUN=2;SNP;TV
+20	69094	.	G	A	99.0	PASS	NS=362;DP=2092;AC=318;AN=724;AF=0.43923;RA=1227;AA=857;SR=691|536;SA=451|406;SB=0.52625;AB=0.49681;ABR=389;ABA=392;RUN=1;SNP;TS
+20	69130	.	C	A	11.5	PASS	NS=365;DP=2014;AC=1;AN=730;AF=0.0013699;RA=2007;AA=3;SR=1082|925;SA=2|1;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	69145	.	A	G	0.195	PASS	NS=367;DP=1999;AC=2;AN=734;AF=0.0027248;RA=1991;AA=5;SR=1033|958;SA=3|2;SB=0.6;AB=0.7;ABR=7;ABA=3;RUN=2;SNP;TS;CpG
+20	69262	.	A	T	1.7	PASS	NS=365;DP=2053;AC=1;AN=730;AF=0.0013699;RA=2047;AA=3;SR=1145|902;SA=2|1;SB=0.66667;AB=0;ABR=0;ABA=2;RUN=3;SNP;TV
+20	69305	.	T	C	0.123	PASS	NS=367;DP=1964;AC=1;AN=734;AF=0.0013624;RA=1956;AA=3;SR=1101|855;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	69355	.	C	T	4.52	PASS	NS=367;DP=2009;AC=1;AN=734;AF=0.0013624;RA=2000;AA=3;SR=970|1030;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS;CpG
+20	69376	.	G	A	0.665	PASS	NS=367;DP=2085;AC=1;AN=734;AF=0.0013624;RA=2077;AA=3;SR=1003|1074;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TS
+20	69408	.	C	T	99.0	PASS	NS=366;DP=2154;AC=38;AN=732;AF=0.051913;RA=2013;AA=133;SR=894|1119;SA=60|73;SB=0.45113;AB=0.51685;ABR=138;ABA=128;RUN=1;SNP;TS;CpG
+20	69486	.	C	G	0.0652	PASS	NS=362;DP=1836;AC=1;AN=724;AF=0.0013812;RA=1820;AA=2;SR=1092|728;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	69641	.	C	A	0.0576	PASS	NS=367;DP=2135;AC=2;AN=734;AF=0.0027248;RA=2121;AA=8;SR=1038|1083;SA=6|2;SB=0.75;AB=0.8125;ABR=13;ABA=3;RUN=3;SNP;TV
+20	69656	.	T	C	0.253	PASS	NS=366;DP=2096;AC=1;AN=732;AF=0.0013661;RA=2090;AA=2;SR=1030|1060;SA=0|2;SB=0;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	69668	.	T	C	40.6	PASS	NS=365;DP=2114;AC=1;AN=730;AF=0.0013699;RA=2104;AA=6;SR=1026|1078;SA=4|2;SB=0.66667;AB=0.5;ABR=4;ABA=4;RUN=1;SNP;TS
+20	69707	.	T	A	0.375	PASS	NS=366;DP=2148;AC=1;AN=732;AF=0.0013661;RA=2143;AA=2;SR=1011|1132;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TV
+20	69723	.	T	A	0.883	PASS	NS=363;DP=2037;AC=1;AN=726;AF=0.0013774;RA=2026;AA=2;SR=945|1081;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	69752	.	A	C	1.31	PASS	NS=362;DP=1984;AC=1;AN=724;AF=0.0013812;RA=1977;AA=2;SR=932|1045;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	69821	.	A	T	0.479	PASS	NS=364;DP=1967;AC=1;AN=728;AF=0.0013736;RA=1960;AA=3;SR=958|1002;SA=3|0;SB=1;AB=0.75;ABR=6;ABA=2;RUN=4;SNP;TV
+20	69835	.	A	G	0.671	PASS	NS=363;DP=1953;AC=1;AN=726;AF=0.0013774;RA=1943;AA=5;SR=936|1007;SA=3|2;SB=0.6;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	69903	.	T	A	0.0459	PASS	NS=362;DP=1913;AC=1;AN=724;AF=0.0013812;RA=1904;AA=5;SR=821|1083;SA=3|2;SB=0.6;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	69951	.	A	T	0.159	PASS	NS=354;DP=1819;AC=2;AN=708;AF=0.0028249;RA=1810;AA=8;SR=774|1036;SA=6|2;SB=0.75;AB=0.78571;ABR=11;ABA=3;RUN=4;SNP;TV
+20	69966	.	T	C	0.661	PASS	NS=351;DP=1768;AC=2;AN=702;AF=0.002849;RA=1762;AA=4;SR=773|989;SA=2|2;SB=0.5;AB=0.76923;ABR=10;ABA=3;RUN=1;SNP;TS;CpG
+20	70470	.	A	G	4.57	PASS	NS=359;DP=1690;AC=1;AN=718;AF=0.0013928;RA=1681;AA=2;SR=1065|616;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	70490	.	C	T	0.934	PASS	NS=358;DP=1682;AC=5;AN=716;AF=0.0069832;RA=1665;AA=12;SR=962|703;SA=11|1;SB=0.91667;AB=0.2;ABR=1;ABA=4;RUN=5;SNP;TS
+20	70604	.	A	T	0.698	PASS	NS=360;DP=1795;AC=2;AN=720;AF=0.0027778;RA=1776;AA=10;SR=1075|701;SA=9|1;SB=0.9;AB=0.57143;ABR=4;ABA=3;RUN=4;SNP;TV
+20	70611	.	G	A	0.143	PASS	NS=362;DP=1806;AC=1;AN=724;AF=0.0013812;RA=1788;AA=5;SR=1077|711;SA=1|4;SB=0.2;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	70696	.	T	C	1.72	PASS	NS=365;DP=1849;AC=1;AN=730;AF=0.0013699;RA=1839;AA=4;SR=983|856;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	70785	.	A	G	99.0	PASS	NS=368;DP=1990;AC=14;AN=736;AF=0.019022;RA=1938;AA=40;SR=1005|933;SA=20|20;SB=0.5;AB=0.51852;ABR=42;ABA=38;RUN=1;SNP;TS
+20	70804	.	C	T	4.03	PASS	NS=369;DP=2057;AC=1;AN=738;AF=0.001355;RA=2042;AA=5;SR=1069|973;SA=2|3;SB=0.4;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	70917	.	T	C	1.54	PASS	NS=369;DP=2193;AC=1;AN=738;AF=0.001355;RA=2182;AA=2;SR=1110|1072;SA=1|1;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	70920	.	A	G	99.0	PASS	NS=368;DP=2172;AC=13;AN=736;AF=0.017663;RA=2121;AA=45;SR=1084|1037;SA=24|21;SB=0.53333;AB=0.38462;ABR=25;ABA=40;RUN=2;SNP;TS
+20	70980	.	G	A	99.0	PASS	NS=368;DP=2339;AC=39;AN=736;AF=0.052989;RA=2221;AA=106;SR=1223|998;SA=71|35;SB=0.66981;AB=0.57416;ABR=120;ABA=89;RUN=1;SNP;TS
+20	71013	.	A	C	0.0504	PASS	NS=371;DP=2390;AC=1;AN=742;AF=0.0013477;RA=2371;AA=12;SR=1359|1012;SA=2|10;SB=0.16667;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	71015	.	T	C	0.569	PASS	NS=371;DP=2398;AC=1;AN=742;AF=0.0013477;RA=2390;AA=5;SR=1364|1026;SA=4|1;SB=0.8;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TS
+20	71037	.	T	C	0.223	PASS	NS=369;DP=2289;AC=1;AN=738;AF=0.001355;RA=2279;AA=4;SR=1353|926;SA=3|1;SB=0.75;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	71079	.	C	T	99.0	PASS	NS=370;DP=2338;AC=60;AN=740;AF=0.081081;RA=2168;AA=166;SR=1421|747;SA=102|64;SB=0.61446;AB=0.53086;ABR=129;ABA=113;RUN=1;SNP;TS
+20	71093	.	G	A	99.0	PASS	NS=365;DP=2393;AC=93;AN=730;AF=0.1274;RA=2085;AA=299;SR=1382|703;SA=194|105;SB=0.64883;AB=0.5317;ABR=260;ABA=225;RUN=1;SNP;TS
+20	71281	.	G	A	66.6	PASS	NS=369;DP=2496;AC=2;AN=738;AF=0.00271;RA=2481;AA=11;SR=1273|1208;SA=4|7;SB=0.36364;AB=0.66667;ABR=12;ABA=6;RUN=1;SNP;TS;CpG
+20	71290	.	A	G	0.526	PASS	NS=368;DP=2466;AC=1;AN=736;AF=0.0013587;RA=2448;AA=4;SR=1262|1186;SA=1|3;SB=0.25;AB=0.81818;ABR=9;ABA=2;RUN=3;SNP;TS
+20	71454	.	T	C	0.691	PASS	NS=370;DP=2518;AC=1;AN=740;AF=0.0013514;RA=2498;AA=5;SR=1203|1295;SA=2|3;SB=0.4;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	71543	.	A	G	1.37	PASS	NS=369;DP=2378;AC=1;AN=738;AF=0.001355;RA=2369;AA=6;SR=1023|1346;SA=3|3;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=3;SNP;TS;CpG
+20	71549	.	G	T	99.0	PASS	NS=370;DP=2354;AC=49;AN=740;AF=0.066216;RA=2139;AA=210;SR=769|1370;SA=208|2;SB=0.99048;AB=0.68065;ABR=211;ABA=99;RUN=4;SNP;TV
+20	71726	.	C	A	5.19	PASS	NS=363;DP=2309;AC=1;AN=726;AF=0.0013774;RA=2301;AA=3;SR=1162|1139;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	71809	.	G	A	27.3	PASS	NS=354;DP=1947;AC=1;AN=708;AF=0.0014124;RA=1937;AA=3;SR=923|1014;SA=1|2;SB=0.33333;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS
+20	71850	.	T	C	0.131	PASS	NS=358;DP=2062;AC=1;AN=716;AF=0.0013966;RA=2055;AA=2;SR=1053|1002;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	71859	.	G	A	14.4	PASS	NS=355;DP=2030;AC=3;AN=710;AF=0.0042254;RA=2010;AA=7;SR=1055|955;SA=2|5;SB=0.28571;AB=0.5;ABR=4;ABA=4;RUN=1;SNP;TS;CpG
+20	71926	.	T	A	4.2	PASS	NS=336;DP=1791;AC=1;AN=672;AF=0.0014881;RA=1787;AA=2;SR=879|908;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	71929	.	T	A	0.237	PASS	NS=336;DP=1782;AC=1;AN=672;AF=0.0014881;RA=1773;AA=3;SR=875|898;SA=1|2;SB=0.33333;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TV
+20	72002	.	A	C	0.101	PASS	NS=340;DP=1976;AC=1;AN=680;AF=0.0014706;RA=1960;AA=10;SR=1100|860;SA=9|1;SB=0.9;AB=0.75;ABR=3;ABA=1;RUN=1;SNP;TV
+20	72036	.	G	A	99.0	PASS	NS=349;DP=2037;AC=6;AN=698;AF=0.008596;RA=2022;AA=11;SR=1106|916;SA=5|6;SB=0.45455;AB=0.60714;ABR=17;ABA=11;RUN=1;SNP;TS;CpG
+20	72206	.	T	G	1.43	PASS	NS=370;DP=2151;AC=1;AN=740;AF=0.0013514;RA=2144;AA=4;SR=1129|1015;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	72287	.	A	G	0.0526	PASS	NS=369;DP=2216;AC=1;AN=738;AF=0.001355;RA=2210;AA=2;SR=1016|1194;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	72331	.	T	A	0.125	PASS	NS=367;DP=2265;AC=1;AN=734;AF=0.0013624;RA=2246;AA=7;SR=1089|1157;SA=6|1;SB=0.85714;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	72406	.	C	T	0.0949	PASS	NS=366;DP=2205;AC=1;AN=732;AF=0.0013661;RA=2191;AA=2;SR=1075|1116;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	72570	.	C	A	2.37	PASS	NS=365;DP=1829;AC=1;AN=730;AF=0.0013699;RA=1810;AA=13;SR=969|841;SA=6|7;SB=0.46154;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	72604	.	A	G	2.22	PASS	NS=363;DP=2084;AC=1;AN=726;AF=0.0013774;RA=2079;AA=3;SR=1043|1036;SA=2|1;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	72632	.	G	T	99.0	PASS	NS=367;DP=2170;AC=21;AN=734;AF=0.02861;RA=2099;AA=67;SR=1017|1082;SA=36|31;SB=0.53731;AB=0.54167;ABR=65;ABA=55;RUN=2;SNP;TV
+20	72665	.	G	A	99.0	PASS	NS=365;DP=2216;AC=3;AN=730;AF=0.0041096;RA=2198;AA=11;SR=1006|1192;SA=3|8;SB=0.27273;AB=0.5;ABR=10;ABA=10;RUN=2;SNP;TS
+20	72719	.	C	T	99.0	PASS	NS=360;DP=2045;AC=12;AN=720;AF=0.016667;RA=2005;AA=33;SR=968|1037;SA=19|14;SB=0.57576;AB=0.52174;ABR=36;ABA=32;RUN=3;SNP;TS
+20	72747	.	T	A	0.163	PASS	NS=368;DP=2073;AC=1;AN=736;AF=0.0013587;RA=2062;AA=4;SR=1092|970;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TV
+20	72771	.	A	T	1.48	PASS	NS=371;DP=2071;AC=1;AN=742;AF=0.0013477;RA=2062;AA=3;SR=1149|913;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	72772	.	A	G	0.311	PASS	NS=371;DP=2065;AC=2;AN=742;AF=0.0026954;RA=2051;AA=5;SR=1145|906;SA=3|2;SB=0.6;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TS
+20	72815	.	T	C	25.8	PASS	NS=367;DP=2079;AC=2;AN=734;AF=0.0027248;RA=2062;AA=8;SR=1133|929;SA=4|4;SB=0.5;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TS
+20	72820	.	C	A	3.07	PASS	NS=366;DP=2061;AC=1;AN=732;AF=0.0013661;RA=2048;AA=5;SR=1097|951;SA=4|1;SB=0.8;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	72882	.	T	C	4.28	PASS	NS=369;DP=2031;AC=1;AN=738;AF=0.001355;RA=2013;AA=5;SR=914|1099;SA=4|1;SB=0.8;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	72887	.	A	G	2.42	PASS	NS=367;DP=2020;AC=1;AN=734;AF=0.0013624;RA=2004;AA=6;SR=906|1098;SA=4|2;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=3;SNP;TS
+20	72890	.	A	G	1.25	PASS	NS=366;DP=2018;AC=1;AN=732;AF=0.0013661;RA=2006;AA=3;SR=910|1096;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	72892	.	G	A	99.0	PASS	NS=365;DP=2011;AC=36;AN=730;AF=0.049315;RA=1913;AA=88;SR=863|1050;SA=43|45;SB=0.48864;AB=0.56647;ABR=98;ABA=73;RUN=5;SNP;TS
+20	72894	.	T	C	77.5	PASS	NS=365;DP=2035;AC=1;AN=730;AF=0.0013699;RA=2010;AA=11;SR=921|1089;SA=4|7;SB=0.36364;AB=0.14286;ABR=1;ABA=6;RUN=1;SNP;TS;CpG
+20	73014	.	C	G	12.4	PASS	NS=368;DP=2017;AC=1;AN=736;AF=0.0013587;RA=1989;AA=3;SR=858|1131;SA=2|1;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	73136	.	T	A	5.76	PASS	NS=282;DP=784;AC=3;AN=564;AF=0.0053191;RA=758;AA=7;SR=402|356;SA=5|2;SB=0.71429;AB=0;ABR=0;ABA=2;RUN=1;SNP;TV
+20	73268	.	G	T	0.0695	PASS	NS=346;DP=1716;AC=1;AN=692;AF=0.0014451;RA=1710;AA=4;SR=1061|649;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	73369	.	C	T	5.68	PASS	NS=365;DP=1955;AC=1;AN=730;AF=0.0013699;RA=1943;AA=6;SR=800|1143;SA=3|3;SB=0.5;AB=0.7;ABR=7;ABA=3;RUN=4;SNP;TS
+20	73416	.	C	T	0.0527	PASS	NS=362;DP=1908;AC=1;AN=724;AF=0.0013812;RA=1894;AA=3;SR=937|957;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	73431	.	C	G	1.76	PASS	NS=363;DP=1863;AC=1;AN=726;AF=0.0013774;RA=1856;AA=3;SR=950|906;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	73719	.	C	A	99.0	PASS	NS=277;DP=997;AC=18;AN=554;AF=0.032491;RA=964;AA=30;SR=443|521;SA=18|12;SB=0.6;AB=0.40909;ABR=9;ABA=13;RUN=1;SNP;TV
+20	73767	.	A	G	3.17	PASS	NS=284;DP=893;AC=1;AN=568;AF=0.0017606;RA=883;AA=3;SR=402|481;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	73852	.	T	G	99.0	PASS	NS=335;DP=1416;AC=7;AN=670;AF=0.010448;RA=1377;AA=28;SR=855|522;SA=8|20;SB=0.28571;AB=0.375;ABR=9;ABA=15;RUN=2;SNP;TV
+20	73858	.	C	T	96.7	PASS	NS=341;DP=1497;AC=9;AN=682;AF=0.013196;RA=1483;AA=13;SR=916|567;SA=8|5;SB=0.61538;AB=0.64516;ABR=20;ABA=11;RUN=1;SNP;TS
+20	73888	.	G	A	0.0568	PASS	NS=351;DP=1692;AC=1;AN=702;AF=0.0014245;RA=1679;AA=4;SR=945|734;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	73957	.	G	A	13.1	PASS	NS=368;DP=2167;AC=1;AN=736;AF=0.0013587;RA=2158;AA=3;SR=1176|982;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	74009	.	C	T	3.44	PASS	NS=369;DP=2230;AC=1;AN=738;AF=0.001355;RA=2224;AA=2;SR=1283|941;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	74053	.	A	T	6.52	PASS	NS=366;DP=2231;AC=1;AN=732;AF=0.0013661;RA=2219;AA=4;SR=1326|893;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	74073	.	T	A	0.0672	PASS	NS=365;DP=2246;AC=1;AN=730;AF=0.0013699;RA=2237;AA=2;SR=1302|935;SA=2|0;SB=1;AB=0.4;ABR=2;ABA=2;RUN=1;SNP;TV
+20	74142	.	A	G	0.849	PASS	NS=370;DP=2293;AC=1;AN=740;AF=0.0013514;RA=2273;AA=7;SR=1239|1034;SA=2|5;SB=0.28571;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TS
+20	74232	.	T	C	0.106	PASS	NS=366;DP=2368;AC=1;AN=732;AF=0.0013661;RA=2348;AA=6;SR=1206|1142;SA=5|1;SB=0.83333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	74247	.	T	C	99.0	PASS	NS=365;DP=2372;AC=1;AN=730;AF=0.0013699;RA=2353;AA=9;SR=1194|1159;SA=2|7;SB=0.22222;AB=0.3;ABR=3;ABA=7;RUN=1;SNP;TS;CpG
+20	74281	.	C	T	3.59	PASS	NS=366;DP=2430;AC=2;AN=732;AF=0.0027322;RA=2418;AA=5;SR=1176|1242;SA=1|4;SB=0.2;AB=0.33333;ABR=2;ABA=4;RUN=2;SNP;TS
+20	74297	.	A	T	0.214	PASS	NS=367;DP=2402;AC=1;AN=734;AF=0.0013624;RA=2379;AA=5;SR=1148|1231;SA=1|4;SB=0.2;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	74347	.	G	A	99.0	PASS	NS=371;DP=2504;AC=76;AN=742;AF=0.10243;RA=2237;AA=253;SR=1152|1085;SA=127|126;SB=0.50198;AB=0.52459;ABR=224;ABA=203;RUN=1;SNP;TS
+20	74355	.	G	T	0.613	PASS	NS=368;DP=2548;AC=1;AN=736;AF=0.0013587;RA=2530;AA=9;SR=1322|1208;SA=5|4;SB=0.55556;AB=0.8125;ABR=13;ABA=2;RUN=1;SNP;TV
+20	74545	.	T	A	1.96	PASS	NS=361;DP=2030;AC=3;AN=722;AF=0.0041551;RA=2012;AA=12;SR=933|1079;SA=4|8;SB=0.33333;AB=0.55;ABR=11;ABA=9;RUN=1;SNP;TV
+20	74595	.	G	C	0.696	PASS	NS=364;DP=2054;AC=1;AN=728;AF=0.0013736;RA=2046;AA=4;SR=1037|1009;SA=1|3;SB=0.25;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	74617	.	A	G	4.15	PASS	NS=365;DP=2159;AC=1;AN=730;AF=0.0013699;RA=2139;AA=6;SR=1030|1109;SA=5|1;SB=0.83333;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	74651	.	T	G	55.6	PASS	NS=367;DP=2262;AC=3;AN=734;AF=0.0040872;RA=2241;AA=12;SR=985|1256;SA=5|7;SB=0.41667;AB=0.46154;ABR=6;ABA=7;RUN=1;SNP;TV
+20	74747	.	C	T	0.125	PASS	NS=355;DP=2085;AC=2;AN=710;AF=0.0028169;RA=2069;AA=10;SR=1059|1010;SA=9|1;SB=0.9;AB=0.57143;ABR=4;ABA=3;RUN=2;SNP;TS
+20	74776	.	T	C	0.0648	PASS	NS=357;DP=2083;AC=1;AN=714;AF=0.0014006;RA=2066;AA=5;SR=1096|970;SA=2|3;SB=0.4;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	74801	.	T	C	0.234	PASS	NS=361;DP=1925;AC=1;AN=722;AF=0.001385;RA=1921;AA=2;SR=960|961;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	74873	.	T	A	0.0536	PASS	NS=337;DP=1479;AC=2;AN=674;AF=0.0029674;RA=1470;AA=4;SR=610|860;SA=2|2;SB=0.5;AB=0.7;ABR=7;ABA=3;RUN=2;SNP;TV
+20	74885	.	C	A	0.412	PASS	NS=342;DP=1549;AC=1;AN=684;AF=0.001462;RA=1540;AA=4;SR=692|848;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=5;SNP;TV
+20	74995	.	T	A	0.177	PASS	NS=365;DP=2238;AC=1;AN=730;AF=0.0013699;RA=2203;AA=16;SR=1233|970;SA=14|2;SB=0.875;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TV
+20	75003	.	T	A	0.703	PASS	NS=365;DP=2252;AC=1;AN=730;AF=0.0013699;RA=2235;AA=3;SR=1241|994;SA=2|1;SB=0.66667;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	75026	.	G	A	6.27	PASS	NS=361;DP=2078;AC=3;AN=722;AF=0.0041551;RA=2063;AA=9;SR=1109|954;SA=6|3;SB=0.66667;AB=0.6;ABR=6;ABA=4;RUN=1;SNP;TS
+20	75040	.	T	C	2.13	PASS	NS=367;DP=2087;AC=1;AN=734;AF=0.0013624;RA=2076;AA=3;SR=1074|1002;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	75245	.	T	A	3.0	PASS	NS=363;DP=2162;AC=1;AN=726;AF=0.0013774;RA=2150;AA=3;SR=1018|1132;SA=1|2;SB=0.33333;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	75254	.	C	A	99.0	PASS	NS=362;DP=2018;AC=255;AN=724;AF=0.35221;RA=1339;AA=657;SR=615|724;SA=345|312;SB=0.52511;AB=0.52083;ABR=450;ABA=401;RUN=2;SNP;TV
+20	75280	.	A	G	0.0778	PASS	NS=350;DP=1862;AC=1;AN=700;AF=0.0014286;RA=1823;AA=17;SR=786|1037;SA=0|17;SB=0;AB=0.5;ABR=1;ABA=1;RUN=1;SNP;TS
+20	75389	.	C	T	2.19	PASS	NS=361;DP=2144;AC=1;AN=722;AF=0.001385;RA=2136;AA=4;SR=1054|1082;SA=3|1;SB=0.75;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	75514	.	C	T	0.116	PASS	NS=369;DP=2263;AC=1;AN=738;AF=0.001355;RA=2248;AA=7;SR=1190|1058;SA=5|2;SB=0.71429;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TS
+20	75516	.	A	G	99.0	PASS	NS=369;DP=2296;AC=5;AN=738;AF=0.0067751;RA=2273;AA=14;SR=1217|1056;SA=3|11;SB=0.21429;AB=0.42105;ABR=8;ABA=11;RUN=1;SNP;TS
+20	75691	.	C	G	1.39	PASS	NS=370;DP=2164;AC=1;AN=740;AF=0.0013514;RA=2149;AA=6;SR=933|1216;SA=3|3;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	75729	.	C	G	99.0	PASS	NS=368;DP=2200;AC=13;AN=736;AF=0.017663;RA=2156;AA=37;SR=1063|1093;SA=19|18;SB=0.51351;AB=0.50667;ABR=38;ABA=36;RUN=1;SNP;TV
+20	75790	.	G	T	0.37	PASS	NS=366;DP=2147;AC=1;AN=732;AF=0.0013661;RA=2139;AA=5;SR=1124|1015;SA=1|4;SB=0.2;AB=0.6;ABR=3;ABA=2;RUN=4;SNP;TV
+20	75813	.	G	T	45.2	PASS	NS=367;DP=2170;AC=2;AN=734;AF=0.0027248;RA=2155;AA=11;SR=1100|1055;SA=3|8;SB=0.27273;AB=0.22222;ABR=2;ABA=7;RUN=2;SNP;TV
+20	75880	.	G	A	4.19	PASS	NS=369;DP=2153;AC=3;AN=738;AF=0.004065;RA=2139;AA=7;SR=1037|1102;SA=4|3;SB=0.57143;AB=0.5;ABR=5;ABA=5;RUN=3;SNP;TS
+20	75999	.	T	C	99.0	PASS	NS=371;DP=2394;AC=21;AN=742;AF=0.028302;RA=2315;AA=63;SR=1290|1025;SA=41|22;SB=0.65079;AB=0.50794;ABR=64;ABA=61;RUN=1;SNP;TS
+20	76282	.	G	A	2.2	PASS	NS=370;DP=2122;AC=1;AN=740;AF=0.0013514;RA=2113;AA=2;SR=1137|976;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	76316	.	T	G	0.0522	PASS	NS=353;DP=2029;AC=1;AN=706;AF=0.0014164;RA=2019;AA=6;SR=1099|920;SA=2|4;SB=0.33333;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TV
+20	76317	.	A	T	0.0577	PASS	NS=353;DP=2039;AC=1;AN=706;AF=0.0014164;RA=2028;AA=4;SR=1106|922;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=3;SNP;TV
+20	76388	.	G	A	99.0	PASS	NS=371;DP=2615;AC=3;AN=742;AF=0.0040431;RA=2588;AA=14;SR=1183|1405;SA=7|7;SB=0.5;AB=0.54167;ABR=13;ABA=11;RUN=1;SNP;TS;CpG
+20	76407	.	C	T	0.047	PASS	NS=369;DP=2638;AC=1;AN=738;AF=0.001355;RA=2620;AA=7;SR=1141|1479;SA=6|1;SB=0.85714;AB=0.5;ABR=1;ABA=1;RUN=3;SNP;TS
+20	76477	.	G	T	0.0468	PASS	NS=369;DP=2510;AC=1;AN=738;AF=0.001355;RA=2495;AA=8;SR=1108|1387;SA=7|1;SB=0.875;AB=0.83333;ABR=5;ABA=1;RUN=1;SNP;TV
+20	76519	.	T	C	55.2	PASS	NS=367;DP=2405;AC=1;AN=734;AF=0.0013624;RA=2395;AA=6;SR=1135|1260;SA=4|2;SB=0.66667;AB=0.44444;ABR=4;ABA=5;RUN=1;SNP;TS
+20	76526	.	G	A	97.7	PASS	NS=365;DP=2372;AC=1;AN=730;AF=0.0013699;RA=2355;AA=6;SR=1100|1255;SA=2|4;SB=0.33333;AB=0.625;ABR=10;ABA=6;RUN=1;SNP;TS
+20	76559	.	G	A	0.0519	PASS	NS=366;DP=2361;AC=1;AN=732;AF=0.0013661;RA=2351;AA=3;SR=1069|1282;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	76614	.	T	C	0.355	PASS	NS=364;DP=2186;AC=1;AN=728;AF=0.0013736;RA=2180;AA=2;SR=1061|1119;SA=1|1;SB=0.5;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	76631	.	T	A	0.135	PASS	NS=362;DP=2146;AC=1;AN=724;AF=0.0013812;RA=2138;AA=4;SR=1088|1050;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TV
+20	76668	.	T	C	0.299	PASS	NS=370;DP=2308;AC=1;AN=740;AF=0.0013514;RA=2288;AA=7;SR=1196|1092;SA=5|2;SB=0.71429;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	76669	.	T	A	3.27	PASS	NS=370;DP=2325;AC=1;AN=740;AF=0.0013514;RA=2319;AA=3;SR=1215|1104;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	76689	.	T	C	14.1	PASS	NS=369;DP=2386;AC=1;AN=738;AF=0.001355;RA=2371;AA=7;SR=1247|1124;SA=4|3;SB=0.57143;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TS
+20	76796	.	T	C	18.7	PASS	NS=368;DP=2408;AC=3;AN=736;AF=0.0040761;RA=2393;AA=9;SR=1269|1124;SA=6|3;SB=0.66667;AB=0.76667;ABR=23;ABA=7;RUN=1;SNP;TS
+20	76801	.	G	A	1.02	PASS	NS=364;DP=2385;AC=1;AN=728;AF=0.0013736;RA=2372;AA=4;SR=1252|1120;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	76915	.	A	G	99.0	PASS	NS=366;DP=2285;AC=3;AN=732;AF=0.0040984;RA=2256;AA=11;SR=1262|994;SA=8|3;SB=0.72727;AB=0.5;ABR=10;ABA=9;RUN=1;SNP;TS
+20	76920	.	G	A	65.7	PASS	NS=367;DP=2288;AC=2;AN=734;AF=0.0027248;RA=2276;AA=7;SR=1297|979;SA=5|2;SB=0.71429;AB=0.58824;ABR=10;ABA=7;RUN=2;SNP;TS
+20	76934	.	A	G	40.7	PASS	NS=368;DP=2253;AC=2;AN=736;AF=0.0027174;RA=2238;AA=6;SR=1276|962;SA=2|4;SB=0.33333;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TS
+20	76962	.	T	C	99.0	PASS	NS=369;DP=2127;AC=599;AN=738;AF=0.81165;RA=436;AA=1670;SR=226|210;SA=898|772;SB=0.53772;AB=0.51024;ABR=299;ABA=281;RUN=2;SNP;TS;CpG
+20	77013	.	C	T	47.1	PASS	NS=370;DP=2371;AC=2;AN=740;AF=0.0027027;RA=2361;AA=5;SR=1049|1312;SA=1|4;SB=0.2;AB=0.57143;ABR=8;ABA=5;RUN=1;SNP;TS;CpG
+20	77025	.	A	G	99.0	PASS	NS=370;DP=2398;AC=4;AN=740;AF=0.0054054;RA=2351;AA=24;SR=1035|1316;SA=5|19;SB=0.20833;AB=0.57143;ABR=24;ABA=18;RUN=1;SNP;TS;CpG
+20	77115	.	A	G	0.997	PASS	NS=371;DP=2355;AC=1;AN=742;AF=0.0013477;RA=2344;AA=4;SR=1291|1053;SA=1|3;SB=0.25;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	77225	.	T	C	0.928	PASS	NS=366;DP=2199;AC=1;AN=732;AF=0.0013661;RA=2192;AA=3;SR=986|1206;SA=2|1;SB=0.66667;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	77264	.	C	T	0.0587	PASS	NS=369;DP=2275;AC=1;AN=738;AF=0.001355;RA=2261;AA=5;SR=1054|1207;SA=3|2;SB=0.6;AB=0.8;ABR=4;ABA=1;RUN=1;SNP;TS
+20	77327	.	G	T	24.8	PASS	NS=367;DP=2294;AC=2;AN=734;AF=0.0027248;RA=2282;AA=10;SR=1172|1110;SA=6|4;SB=0.6;AB=0.6875;ABR=11;ABA=5;RUN=2;SNP;TV
+20	77393	.	G	A	32.7	PASS	NS=367;DP=2297;AC=1;AN=734;AF=0.0013624;RA=2277;AA=11;SR=1261|1016;SA=6|5;SB=0.54545;AB=0.5;ABR=4;ABA=4;RUN=3;SNP;TS;CpG
+20	77484	.	A	T	0.241	PASS	NS=369;DP=2290;AC=1;AN=738;AF=0.001355;RA=2283;AA=5;SR=1203|1080;SA=4|1;SB=0.8;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	77499	.	G	T	0.058	PASS	NS=369;DP=2269;AC=1;AN=738;AF=0.001355;RA=2260;AA=4;SR=1216|1044;SA=1|3;SB=0.25;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	77655	.	T	C	0.0462	PASS	NS=371;DP=2542;AC=1;AN=742;AF=0.0013477;RA=2533;AA=3;SR=1188|1345;SA=2|1;SB=0.66667;AB=0.83333;ABR=10;ABA=2;RUN=2;SNP;TS;CpG
+20	77816	.	G	A	99.0	PASS	NS=369;DP=2224;AC=16;AN=738;AF=0.02168;RA=2161;AA=45;SR=1004|1157;SA=21|24;SB=0.46667;AB=0.53571;ABR=45;ABA=37;RUN=1;SNP;TS
+20	77870	.	A	G	0.0585	PASS	NS=368;DP=2214;AC=1;AN=736;AF=0.0013587;RA=2176;AA=15;SR=836|1340;SA=3|12;SB=0.2;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TS
+20	77871	.	C	T	28.8	PASS	NS=368;DP=2215;AC=4;AN=736;AF=0.0054348;RA=2200;AA=11;SR=831|1369;SA=6|5;SB=0.54545;AB=0.75;ABR=9;ABA=3;RUN=1;SNP;TS;CpG
+20	77884	.	T	C	2.39	PASS	NS=369;DP=2325;AC=1;AN=738;AF=0.001355;RA=2308;AA=4;SR=832|1476;SA=3|1;SB=0.75;AB=0;ABR=0;ABA=2;RUN=2;SNP;TS;CpG
+20	77890	.	T	C	13.2	PASS	NS=369;DP=2347;AC=1;AN=738;AF=0.001355;RA=2324;AA=5;SR=842|1482;SA=3|2;SB=0.6;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	78254	.	C	T	99.0	PASS	NS=345;DP=1534;AC=11;AN=690;AF=0.015942;RA=1494;AA=34;SR=751|743;SA=18|16;SB=0.52941;AB=0.58824;ABR=50;ABA=34;RUN=1;SNP;TS
+20	78255	.	C	A	0.0735	PASS	NS=347;DP=1551;AC=1;AN=694;AF=0.0014409;RA=1538;AA=6;SR=774|764;SA=1|5;SB=0.16667;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	78266	.	T	A	0.136	PASS	NS=354;DP=1640;AC=1;AN=708;AF=0.0014124;RA=1632;AA=4;SR=840|792;SA=2|2;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TV
+20	78455	.	G	A	99.0	PASS	NS=342;DP=1209;AC=3;AN=684;AF=0.004386;RA=1190;AA=12;SR=657|533;SA=5|7;SB=0.41667;AB=0.45;ABR=9;ABA=11;RUN=1;SNP;TS;CpG
+20	78515	.	G	A	15.5	PASS	NS=201;DP=435;AC=1;AN=402;AF=0.0024876;RA=429;AA=2;SR=37|392;SA=0|2;SB=0;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	78691	.	T	G	0.408	PASS	NS=164;DP=352;AC=1;AN=328;AF=0.0030488;RA=346;AA=3;SR=10|336;SA=0|3;SB=0;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	79234	.	T	C	99.0	PASS	NS=185;DP=299;AC=221;AN=370;AF=0.5973;RA=126;AA=171;SR=83|43;SA=113|58;SB=0.66082;AB=0.57447;ABR=27;ABA=20;RUN=1;SNP;TS
+20	79509	.	A	G	6.23	PASS	NS=341;DP=1250;AC=1;AN=682;AF=0.0014663;RA=1242;AA=3;SR=618|624;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	79697	.	A	G	6.18	PASS	NS=129;DP=195;AC=1;AN=258;AF=0.003876;RA=191;AA=2;SR=53|138;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	79749	.	A	T	0.0964	PASS	NS=158;DP=301;AC=2;AN=316;AF=0.0063291;RA=290;AA=3;SR=117|173;SA=2|1;SB=0.66667;AB=0.5;ABR=3;ABA=3;RUN=1;SNP;TV
+20	79969	.	T	G	6.07	PASS	NS=214;DP=647;AC=1;AN=428;AF=0.0023364;RA=643;AA=2;SR=615|28;SA=2|0;SB=1;AB=0;ABR=0;ABA=2;RUN=2;SNP;TV
+20	80071	.	G	A	99.0	PASS	NS=299;DP=809;AC=271;AN=598;AF=0.45318;RA=473;AA=335;SR=453|20;SA=325|10;SB=0.97015;AB=0.53559;ABR=158;ABA=137;RUN=1;SNP;TS
+20	80079	.	G	A	27.1	PASS	NS=316;DP=898;AC=7;AN=632;AF=0.011076;RA=888;AA=8;SR=851|37;SA=6|2;SB=0.75;AB=0.73333;ABR=22;ABA=8;RUN=1;SNP;TS;CpG
+20	80095	.	A	G	0.0807	PASS	NS=324;DP=1080;AC=3;AN=648;AF=0.0046296;RA=1063;AA=7;SR=935|128;SA=4|3;SB=0.57143;AB=0.61538;ABR=8;ABA=5;RUN=2;SNP;TS
+20	80165	.	G	T	0.0494	PASS	NS=365;DP=2212;AC=1;AN=730;AF=0.0013699;RA=2191;AA=14;SR=1178|1013;SA=1|13;SB=0.071429;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	80174	.	A	T	0.633	PASS	NS=369;DP=2363;AC=1;AN=738;AF=0.001355;RA=2353;AA=2;SR=1187|1166;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TV
+20	80251	.	T	C	2.09	PASS	NS=369;DP=2247;AC=1;AN=738;AF=0.001355;RA=2212;AA=25;SR=1205|1007;SA=5|20;SB=0.2;AB=0.22222;ABR=2;ABA=7;RUN=3;SNP;TS
+20	80289	.	C	A	1.02	PASS	NS=367;DP=2183;AC=1;AN=734;AF=0.0013624;RA=2177;AA=3;SR=1321|856;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TV
+20	80359	.	T	C	0.834	PASS	NS=367;DP=2201;AC=1;AN=734;AF=0.0013624;RA=2177;AA=7;SR=1148|1029;SA=6|1;SB=0.85714;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	80448	.	A	G	0.782	PASS	NS=367;DP=2320;AC=1;AN=734;AF=0.0013624;RA=2310;AA=4;SR=1056|1254;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	80481	.	G	C	99.0	PASS	NS=368;DP=2442;AC=48;AN=736;AF=0.065217;RA=2286;AA=149;SR=1092|1194;SA=62|87;SB=0.41611;AB=0.50794;ABR=128;ABA=122;RUN=1;SNP;TV
+20	80497	.	G	T	0.851	PASS	NS=366;DP=2581;AC=1;AN=732;AF=0.0013661;RA=2572;AA=5;SR=1218|1354;SA=2|3;SB=0.4;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TV
+20	80513	.	C	G	25.9	PASS	NS=369;DP=2672;AC=1;AN=738;AF=0.001355;RA=2659;AA=6;SR=1308|1351;SA=3|3;SB=0.5;AB=0.33333;ABR=2;ABA=4;RUN=2;SNP;TV
+20	80525	.	C	A	0.0588	PASS	NS=365;DP=2634;AC=1;AN=730;AF=0.0013699;RA=2619;AA=5;SR=1324|1295;SA=3|2;SB=0.6;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	80655	.	A	G	99.0	PASS	NS=366;DP=2328;AC=646;AN=732;AF=0.88251;RA=331;AA=1993;SR=147|184;SA=829|1164;SB=0.41596;AB=0.56156;ABR=260;ABA=203;RUN=1;SNP;TS
+20	80725	.	T	A	8.94	PASS	NS=366;DP=2067;AC=1;AN=732;AF=0.0013661;RA=2061;AA=2;SR=1019|1042;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	80728	.	C	G	99.0	PASS	NS=366;DP=2029;AC=17;AN=732;AF=0.023224;RA=1969;AA=56;SR=983|986;SA=27|29;SB=0.48214;AB=0.5045;ABR=56;ABA=55;RUN=1;SNP;TV
+20	80838	.	C	T	76.1	PASS	NS=365;DP=2253;AC=1;AN=730;AF=0.0013699;RA=2239;AA=6;SR=953|1286;SA=1|5;SB=0.16667;AB=0.5;ABR=4;ABA=4;RUN=1;SNP;TS;CpG
+20	80856	.	C	G	0.0837	PASS	NS=363;DP=2218;AC=1;AN=726;AF=0.0013774;RA=2206;AA=4;SR=931|1275;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	80865	.	A	C	0.0761	PASS	NS=363;DP=2195;AC=1;AN=726;AF=0.0013774;RA=2187;AA=5;SR=937|1250;SA=4|1;SB=0.8;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	80887	.	G	A	58.7	PASS	NS=361;DP=2159;AC=1;AN=722;AF=0.001385;RA=2148;AA=6;SR=901|1247;SA=3|3;SB=0.5;AB=0.55556;ABR=5;ABA=4;RUN=1;SNP;TS
+20	81001	.	T	C	39.3	PASS	NS=364;DP=1961;AC=1;AN=728;AF=0.0013736;RA=1955;AA=3;SR=979|976;SA=3|0;SB=1;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS
+20	81017	.	C	T	0.602	PASS	NS=358;DP=1953;AC=1;AN=716;AF=0.0013966;RA=1946;AA=3;SR=966|980;SA=2|1;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	81071	.	A	G	99.0	PASS	NS=363;DP=1794;AC=6;AN=726;AF=0.0082645;RA=1756;AA=20;SR=873|883;SA=8|12;SB=0.4;AB=0.38462;ABR=10;ABA=16;RUN=1;SNP;TS
+20	81282	.	A	T	3.99	PASS	NS=361;DP=1909;AC=1;AN=722;AF=0.001385;RA=1900;AA=4;SR=1029|871;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	81297	.	T	A	9.74	PASS	NS=360;DP=1948;AC=1;AN=720;AF=0.0013889;RA=1931;AA=6;SR=1062|869;SA=4|2;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	81298	.	G	A	99.0	PASS	NS=360;DP=1942;AC=5;AN=720;AF=0.0069444;RA=1923;AA=17;SR=1058|865;SA=11|6;SB=0.64706;AB=0.40909;ABR=9;ABA=13;RUN=1;SNP;TS
+20	81481	.	A	G	0.751	PASS	NS=354;DP=1746;AC=1;AN=708;AF=0.0014124;RA=1737;AA=3;SR=786|951;SA=2|1;SB=0.66667;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	81550	.	G	T	13.7	PASS	NS=351;DP=1755;AC=1;AN=702;AF=0.0014245;RA=1750;AA=3;SR=809|941;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	81551	.	A	T	10.2	PASS	NS=350;DP=1763;AC=1;AN=700;AF=0.0014286;RA=1754;AA=2;SR=809|945;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	81561	.	A	G	0.396	PASS	NS=348;DP=1704;AC=1;AN=696;AF=0.0014368;RA=1696;AA=3;SR=816|880;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	81602	.	C	G	1.28	PASS	NS=348;DP=1658;AC=1;AN=696;AF=0.0014368;RA=1645;AA=3;SR=860|785;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	81679	.	T	G	4.28	PASS	NS=350;DP=1612;AC=1;AN=700;AF=0.0014286;RA=1602;AA=5;SR=664|938;SA=1|4;SB=0.2;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	81692	.	T	C	4.66	PASS	NS=347;DP=1557;AC=1;AN=694;AF=0.0014409;RA=1550;AA=5;SR=624|926;SA=1|4;SB=0.2;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	81715	.	C	G	5.01	PASS	NS=344;DP=1520;AC=1;AN=688;AF=0.0014535;RA=1513;AA=2;SR=584|929;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	81966	.	G	A	15.2	PASS	NS=187;DP=338;AC=1;AN=374;AF=0.0026738;RA=329;AA=4;SR=172|157;SA=4|0;SB=1;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS;CpG
+20	82012	.	T	C	57.6	PASS	NS=161;DP=273;AC=49;AN=322;AF=0.15217;RA=222;AA=41;SR=75|147;SA=16|25;SB=0.39024;AB=0.6;ABR=15;ABA=10;RUN=2;SNP;TS;CpG
+20	82119	.	G	A	1.23	PASS	NS=223;DP=490;AC=1;AN=446;AF=0.0022422;RA=486;AA=2;SR=322|164;SA=1|1;SB=0.5;AB=0;ABR=0;ABA=2;RUN=1;SNP;TS
+20	82168	.	G	A	0.0662	PASS	NS=223;DP=456;AC=1;AN=446;AF=0.0022422;RA=447;AA=3;SR=316|131;SA=2|1;SB=0.66667;AB=0;ABR=0;ABA=2;RUN=1;SNP;TS;CpG
+20	82204	.	T	C	60.6	PASS	NS=275;DP=670;AC=17;AN=550;AF=0.030909;RA=633;AA=23;SR=366|267;SA=16|7;SB=0.69565;AB=0.5;ABR=11;ABA=11;RUN=1;SNP;TS;CpG
+20	82215	.	G	A	99.0	PASS	NS=313;DP=849;AC=97;AN=626;AF=0.15495;RA=715;AA=126;SR=411|304;SA=85|41;SB=0.6746;AB=0.49645;ABR=70;ABA=71;RUN=1;SNP;TS;CpG
+20	82217	.	G	A	99.0	PASS	NS=314;DP=864;AC=493;AN=628;AF=0.78503;RA=182;AA=666;SR=108|74;SA=392|274;SB=0.58859;AB=0.46875;ABR=75;ABA=83;RUN=1;SNP;TS;CpG
+20	82223	.	C	T	99.0	PASS	NS=325;DP=994;AC=20;AN=650;AF=0.030769;RA=956;AA=34;SR=548|408;SA=18|16;SB=0.52941;AB=0.53488;ABR=23;ABA=19;RUN=1;SNP;TS
+20	82239	.	A	T	7.56	PASS	NS=344;DP=1299;AC=1;AN=688;AF=0.0014535;RA=1285;AA=2;SR=747|538;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	82258	.	A	G	14.1	PASS	NS=355;DP=1549;AC=2;AN=710;AF=0.0028169;RA=1536;AA=8;SR=883|653;SA=3|5;SB=0.375;AB=0.61538;ABR=8;ABA=5;RUN=3;SNP;TS
+20	82309	.	G	A	0.136	PASS	NS=356;DP=1542;AC=1;AN=712;AF=0.0014045;RA=1528;AA=6;SR=935|593;SA=3|3;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=5;SNP;TS
+20	82359	.	T	C	15.4	PASS	NS=365;DP=1749;AC=1;AN=730;AF=0.0013699;RA=1734;AA=8;SR=1094|640;SA=5|3;SB=0.625;AB=0.625;ABR=5;ABA=3;RUN=3;SNP;TS
+20	82415	.	A	C	23.9	PASS	NS=369;DP=1845;AC=1;AN=738;AF=0.001355;RA=1831;AA=10;SR=1068|763;SA=6|4;SB=0.6;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TV
+20	82416	.	T	C	99.0	PASS	NS=369;DP=1849;AC=16;AN=738;AF=0.02168;RA=1813;AA=31;SR=1060|753;SA=14|17;SB=0.45161;AB=0.57627;ABR=34;ABA=25;RUN=1;SNP;TS
+20	82446	.	C	G	59.2	PASS	NS=359;DP=1707;AC=1;AN=718;AF=0.0013928;RA=1700;AA=4;SR=909|791;SA=2|2;SB=0.5;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TV
+20	82460	.	C	T	9.05	PASS	NS=363;DP=1665;AC=1;AN=726;AF=0.0013774;RA=1657;AA=3;SR=856|801;SA=2|1;SB=0.66667;AB=0.25;ABR=1;ABA=3;RUN=2;SNP;TS
+20	82571	.	T	C	12.6	PASS	NS=351;DP=1817;AC=1;AN=702;AF=0.0014245;RA=1807;AA=4;SR=940|867;SA=3|1;SB=0.75;AB=0.5;ABR=3;ABA=3;RUN=1;SNP;TS
+20	82701	.	T	C	99.0	PASS	NS=351;DP=1848;AC=103;AN=702;AF=0.14672;RA=1578;AA=267;SR=848|730;SA=159|108;SB=0.59551;AB=0.5063;ABR=241;ABA=235;RUN=1;SNP;TS
+20	82729	.	G	C	7.54	PASS	NS=348;DP=1793;AC=1;AN=696;AF=0.0014368;RA=1782;AA=5;SR=948|834;SA=2|3;SB=0.4;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	82783	.	C	G	0.355	PASS	NS=364;DP=1952;AC=1;AN=728;AF=0.0013736;RA=1940;AA=3;SR=954|986;SA=1|2;SB=0.33333;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TV
+20	82898	.	C	T	99.0	PASS	NS=367;DP=2131;AC=3;AN=734;AF=0.0040872;RA=2111;AA=11;SR=1035|1076;SA=7|4;SB=0.63636;AB=0.68966;ABR=20;ABA=9;RUN=3;SNP;TS
+20	82923	.	T	A	0.244	PASS	NS=368;DP=2124;AC=1;AN=736;AF=0.0013587;RA=2113;AA=2;SR=1084|1029;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	82991	.	G	C	11.7	PASS	NS=367;DP=1988;AC=1;AN=734;AF=0.0013624;RA=1974;AA=3;SR=1070|904;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	83034	.	T	C	1.7	PASS	NS=367;DP=2054;AC=1;AN=734;AF=0.0013624;RA=2021;AA=8;SR=1049|972;SA=6|2;SB=0.75;AB=0;ABR=0;ABA=2;RUN=1;SNP;TS
+20	83129	.	A	G	0.056	PASS	NS=367;DP=2217;AC=1;AN=734;AF=0.0013624;RA=2204;AA=6;SR=1098|1106;SA=0|6;SB=0;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TS
+20	83154	.	C	G	0.0482	PASS	NS=368;DP=2149;AC=1;AN=736;AF=0.0013587;RA=2137;AA=6;SR=1070|1067;SA=3|3;SB=0.5;AB=0.5;ABR=1;ABA=1;RUN=1;SNP;TV
+20	83196	.	A	T	99.0	PASS	NS=368;DP=1931;AC=14;AN=736;AF=0.019022;RA=1884;AA=39;SR=936|948;SA=18|21;SB=0.46154;AB=0.47619;ABR=30;ABA=33;RUN=3;SNP;TV
+20	83231	.	G	A	2.47	PASS	NS=339;DP=1326;AC=1;AN=678;AF=0.0014749;RA=1312;AA=5;SR=685|627;SA=3|2;SB=0.6;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	83481	.	G	T	0.0764	PASS	NS=363;DP=2028;AC=1;AN=726;AF=0.0013774;RA=2017;AA=7;SR=858|1159;SA=3|4;SB=0.42857;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	83485	.	A	C	2.92	PASS	NS=363;DP=2053;AC=1;AN=726;AF=0.0013774;RA=2047;AA=4;SR=881|1166;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	83492	.	A	T	2.75	PASS	NS=361;DP=2031;AC=1;AN=722;AF=0.001385;RA=2016;AA=11;SR=866|1150;SA=9|2;SB=0.81818;AB=0.625;ABR=5;ABA=3;RUN=6;SNP;TV
+20	83501	.	G	A	0.105	PASS	NS=362;DP=2022;AC=1;AN=724;AF=0.0013812;RA=2015;AA=2;SR=889|1126;SA=1|1;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=3;SNP;TS
+20	83570	.	T	G	99.0	PASS	NS=366;DP=2101;AC=53;AN=732;AF=0.072404;RA=1942;AA=152;SR=1026|916;SA=88|64;SB=0.57895;AB=0.47685;ABR=103;ABA=113;RUN=3;SNP;TV
+20	83611	.	C	A	99.0	PASS	NS=367;DP=2005;AC=13;AN=734;AF=0.017711;RA=1959;AA=41;SR=1062|897;SA=20|21;SB=0.4878;AB=0.51852;ABR=42;ABA=38;RUN=1;SNP;TV
+20	83613	.	T	C	0.232	PASS	NS=367;DP=2011;AC=1;AN=734;AF=0.0013624;RA=2004;AA=4;SR=1083|921;SA=2|2;SB=0.5;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	83629	.	C	T	5.45	PASS	NS=363;DP=1970;AC=1;AN=726;AF=0.0013774;RA=1962;AA=3;SR=1038|924;SA=2|1;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS;CpG
+20	83666	.	G	T	0.202	PASS	NS=360;DP=1983;AC=1;AN=720;AF=0.0013889;RA=1977;AA=3;SR=1132|845;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	83732	.	A	T	0.0538	PASS	NS=369;DP=2058;AC=1;AN=738;AF=0.001355;RA=2035;AA=9;SR=1048|987;SA=1|8;SB=0.11111;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	83765	.	A	G	1.78	PASS	NS=369;DP=2031;AC=1;AN=738;AF=0.001355;RA=2018;AA=3;SR=1058|960;SA=2|1;SB=0.66667;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	83777	.	T	C	0.0484	PASS	NS=368;DP=2022;AC=1;AN=736;AF=0.0013587;RA=2013;AA=6;SR=1109|904;SA=6|0;SB=1;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	83819	.	A	T	1.79	PASS	NS=366;DP=2143;AC=1;AN=732;AF=0.0013661;RA=2133;AA=3;SR=1253|880;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	83929	.	G	A	99.0	PASS	NS=365;DP=2235;AC=2;AN=730;AF=0.0027397;RA=2216;AA=10;SR=999|1217;SA=2|8;SB=0.2;AB=0.61538;ABR=16;ABA=10;RUN=1;SNP;TS
+20	83934	.	C	T	0.265	PASS	NS=365;DP=2214;AC=1;AN=730;AF=0.0013699;RA=2192;AA=3;SR=983|1209;SA=2|1;SB=0.66667;AB=0.83333;ABR=10;ABA=2;RUN=2;SNP;TS
+20	83966	.	C	T	0.338	PASS	NS=370;DP=2246;AC=1;AN=740;AF=0.0013514;RA=2222;AA=6;SR=1045|1177;SA=4|2;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	83971	.	C	T	22.1	PASS	NS=368;DP=2238;AC=2;AN=736;AF=0.0027174;RA=2220;AA=11;SR=1057|1163;SA=7|4;SB=0.63636;AB=0.5;ABR=8;ABA=8;RUN=1;SNP;TS;CpG
+20	83996	.	C	G	99.0	PASS	NS=366;DP=2129;AC=25;AN=732;AF=0.034153;RA=2061;AA=56;SR=1024|1037;SA=22|34;SB=0.39286;AB=0.5283;ABR=56;ABA=50;RUN=1;SNP;TV
+20	84003	.	A	G	0.091	PASS	NS=365;DP=2098;AC=1;AN=730;AF=0.0013699;RA=2068;AA=12;SR=1047|1021;SA=1|11;SB=0.083333;AB=0.85714;ABR=12;ABA=2;RUN=1;SNP;TS
+20	84079	.	G	A	45.3	PASS	NS=360;DP=1898;AC=1;AN=720;AF=0.0013889;RA=1874;AA=10;SR=901|973;SA=7|3;SB=0.7;AB=0.44444;ABR=4;ABA=5;RUN=3;SNP;TS
+20	84201	.	G	A	99.0	PASS	NS=355;DP=1809;AC=4;AN=710;AF=0.0056338;RA=1784;AA=14;SR=830|954;SA=9|5;SB=0.64286;AB=0.5;ABR=11;ABA=11;RUN=2;SNP;TS
+20	84351	.	G	A	1.43	PASS	NS=363;DP=2151;AC=1;AN=726;AF=0.0013774;RA=2138;AA=4;SR=1159|979;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	84358	.	T	C	0.98	PASS	NS=360;DP=2134;AC=1;AN=720;AF=0.0013889;RA=2108;AA=13;SR=1150|958;SA=9|4;SB=0.69231;AB=0.8;ABR=12;ABA=3;RUN=1;SNP;TS
+20	84488	.	A	G	0.241	PASS	NS=365;DP=2176;AC=2;AN=730;AF=0.0027397;RA=2139;AA=9;SR=1014|1125;SA=3|6;SB=0.33333;AB=0.5;ABR=3;ABA=3;RUN=3;SNP;TS;CpG
+20	84499	.	G	A	27.9	PASS	NS=364;DP=2141;AC=1;AN=728;AF=0.0013736;RA=2118;AA=11;SR=1047|1071;SA=5|6;SB=0.45455;AB=0.55556;ABR=5;ABA=4;RUN=2;SNP;TS
+20	84504	.	G	A	35.0	PASS	NS=366;DP=2125;AC=3;AN=732;AF=0.0040984;RA=2098;AA=13;SR=1028|1070;SA=10|3;SB=0.76923;AB=0.36364;ABR=4;ABA=7;RUN=2;SNP;TS
+20	84666	.	G	A	99.0	PASS	NS=368;DP=2163;AC=3;AN=736;AF=0.0040761;RA=2140;AA=15;SR=1118|1022;SA=6|9;SB=0.4;AB=0.28571;ABR=4;ABA=10;RUN=4;SNP;TS;CpG
+20	84727	.	G	A	88.5	PASS	NS=371;DP=2412;AC=2;AN=742;AF=0.0026954;RA=2393;AA=10;SR=1261|1132;SA=4|6;SB=0.4;AB=0.5625;ABR=9;ABA=7;RUN=1;SNP;TS
+20	84892	.	C	T	99.0	PASS	NS=368;DP=2536;AC=8;AN=736;AF=0.01087;RA=2499;AA=25;SR=1170|1329;SA=12|13;SB=0.48;AB=0.55102;ABR=27;ABA=21;RUN=1;SNP;TS
+20	84906	.	T	C	99.0	PASS	NS=369;DP=2485;AC=7;AN=738;AF=0.0094851;RA=2422;AA=30;SR=1127|1295;SA=20|10;SB=0.66667;AB=0.58491;ABR=31;ABA=20;RUN=1;SNP;TS;CpG
+20	84934	.	C	T	0.156	PASS	NS=369;DP=2365;AC=1;AN=738;AF=0.001355;RA=2353;AA=4;SR=1081|1272;SA=3|1;SB=0.75;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	84937	.	T	A	0.102	PASS	NS=369;DP=2325;AC=2;AN=738;AF=0.00271;RA=2299;AA=11;SR=1060|1239;SA=3|8;SB=0.27273;AB=0.76923;ABR=10;ABA=3;RUN=2;SNP;TV
+20	84949	.	G	A	1.84	PASS	NS=369;DP=2295;AC=1;AN=738;AF=0.001355;RA=2281;AA=5;SR=1075|1206;SA=1|4;SB=0.2;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	85116	.	C	T	99.0	PASS	NS=367;DP=2259;AC=49;AN=734;AF=0.066757;RA=2119;AA=129;SR=989|1130;SA=54|75;SB=0.4186;AB=0.50679;ABR=112;ABA=106;RUN=1;SNP;TS
+20	85180	.	A	G	2.49	PASS	NS=366;DP=2123;AC=1;AN=732;AF=0.0013661;RA=2111;AA=3;SR=882|1229;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	85182	.	C	T	6.7	PASS	NS=365;DP=2111;AC=1;AN=730;AF=0.0013699;RA=2100;AA=2;SR=874|1226;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	85195	.	A	G	0.062	PASS	NS=354;DP=2020;AC=1;AN=708;AF=0.0014124;RA=2010;AA=5;SR=851|1159;SA=2|3;SB=0.4;AB=0.875;ABR=14;ABA=2;RUN=3;SNP;TS
+20	85371	.	A	G	3.11	PASS	NS=349;DP=2019;AC=1;AN=698;AF=0.0014327;RA=2008;AA=2;SR=1054|954;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	85388	.	G	A	2.07	PASS	NS=364;DP=2082;AC=1;AN=728;AF=0.0013736;RA=2071;AA=4;SR=1054|1017;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	85414	.	G	C	0.348	PASS	NS=369;DP=2163;AC=1;AN=738;AF=0.001355;RA=2147;AA=5;SR=1106|1041;SA=3|2;SB=0.6;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TV
+20	85492	.	T	C	2.17	PASS	NS=369;DP=2347;AC=1;AN=738;AF=0.001355;RA=2323;AA=6;SR=1170|1153;SA=4|2;SB=0.66667;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TS
+20	85530	.	G	A	1.82	PASS	NS=366;DP=1908;AC=1;AN=732;AF=0.0013661;RA=1900;AA=3;SR=984|916;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	85875	.	A	G	38.7	PASS	NS=357;DP=1986;AC=2;AN=714;AF=0.0028011;RA=1979;AA=6;SR=1078|901;SA=4|2;SB=0.66667;AB=0.44444;ABR=4;ABA=5;RUN=1;SNP;TS
+20	85937	.	G	C	99.0	PASS	NS=369;DP=2379;AC=3;AN=738;AF=0.004065;RA=2348;AA=15;SR=1362|986;SA=9|6;SB=0.6;AB=0.38095;ABR=8;ABA=13;RUN=1;SNP;TV
+20	86055	.	A	C	0.233	PASS	NS=369;DP=2109;AC=1;AN=738;AF=0.001355;RA=2095;AA=7;SR=1161|934;SA=5|2;SB=0.71429;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	86103	.	G	T	10.5	PASS	NS=355;DP=2067;AC=1;AN=710;AF=0.0014085;RA=2052;AA=6;SR=1129|923;SA=2|4;SB=0.33333;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TV
+20	86115	.	G	A	99.0	PASS	NS=356;DP=2026;AC=16;AN=712;AF=0.022472;RA=1969;AA=51;SR=1039|930;SA=28|23;SB=0.54902;AB=0.48837;ABR=42;ABA=44;RUN=1;SNP;TS;CpG
+20	86335	.	T	A	2.87	PASS	NS=357;DP=2032;AC=2;AN=714;AF=0.0028011;RA=2003;AA=17;SR=925|1078;SA=0|17;SB=0;AB=0.625;ABR=10;ABA=6;RUN=6;SNP;TV
+20	86458	.	C	T	0.0675	PASS	NS=362;DP=1974;AC=1;AN=724;AF=0.0013812;RA=1959;AA=2;SR=1098|861;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	86620	.	T	A	4.96	PASS	NS=368;DP=2381;AC=1;AN=736;AF=0.0013587;RA=2365;AA=3;SR=1199|1166;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	86691	.	C	T	0.306	PASS	NS=359;DP=2285;AC=1;AN=718;AF=0.0013928;RA=2274;AA=4;SR=1261|1013;SA=2|2;SB=0.5;AB=0.84615;ABR=11;ABA=2;RUN=1;SNP;TS
+20	86719	.	A	G	0.0505	PASS	NS=362;DP=2130;AC=1;AN=724;AF=0.0013812;RA=2108;AA=9;SR=1090|1018;SA=0|9;SB=0;AB=0.75;ABR=3;ABA=1;RUN=1;SNP;TS
+20	86757	.	A	G	2.16	PASS	NS=364;DP=2159;AC=1;AN=728;AF=0.0013736;RA=2147;AA=4;SR=1029|1118;SA=1|3;SB=0.25;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	86823	.	T	G	1.16	PASS	NS=360;DP=1894;AC=1;AN=720;AF=0.0013889;RA=1867;AA=9;SR=870|997;SA=1|8;SB=0.11111;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	87003	.	A	C	43.6	PASS	NS=357;DP=2114;AC=1;AN=714;AF=0.0014006;RA=2103;AA=10;SR=846|1257;SA=8|2;SB=0.8;AB=0.28571;ABR=2;ABA=5;RUN=1;SNP;TV
+20	87029	.	C	A	6.64	PASS	NS=353;DP=2097;AC=1;AN=706;AF=0.0014164;RA=2090;AA=5;SR=842|1248;SA=4|1;SB=0.8;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	87067	.	A	T	0.0727	PASS	NS=349;DP=1846;AC=1;AN=698;AF=0.0014327;RA=1839;AA=4;SR=850|989;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	87112	.	G	A	99.0	PASS	NS=350;DP=1657;AC=181;AN=700;AF=0.25857;RA=1252;AA=400;SR=740|512;SA=233|167;SB=0.5825;AB=0.51139;ABR=247;ABA=236;RUN=4;SNP;TS;CpG
+20	87230	.	G	A	0.205	PASS	NS=347;DP=1809;AC=4;AN=694;AF=0.0057637;RA=1779;AA=26;SR=812|967;SA=1|25;SB=0.038462;AB=0.71429;ABR=15;ABA=6;RUN=8;SNP;TS
+20	87254	.	C	T	99.0	PASS	NS=333;DP=1705;AC=3;AN=666;AF=0.0045045;RA=1687;AA=11;SR=755|932;SA=5|6;SB=0.45455;AB=0.5;ABR=4;ABA=4;RUN=2;SNP;TS
+20	87265	.	A	G	0.41	PASS	NS=335;DP=1686;AC=1;AN=670;AF=0.0014925;RA=1680;AA=3;SR=813|867;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	87313	.	A	G	1.57	PASS	NS=354;DP=1886;AC=1;AN=708;AF=0.0014124;RA=1880;AA=2;SR=941|939;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	87314	.	A	T	0.279	PASS	NS=354;DP=1882;AC=1;AN=708;AF=0.0014124;RA=1874;AA=3;SR=939|935;SA=2|1;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	87362	.	A	G	99.0	PASS	NS=345;DP=1823;AC=26;AN=690;AF=0.037681;RA=1732;AA=89;SR=879|853;SA=46|43;SB=0.51685;AB=0.46809;ABR=66;ABA=75;RUN=1;SNP;TS
+20	87416	.	A	C	99.0	PASS	NS=357;DP=1755;AC=511;AN=714;AF=0.71569;RA=537;AA=1217;SR=259|278;SA=650|567;SB=0.5341;AB=0.48414;ABR=290;ABA=309;RUN=3;SNP;TV
+20	87471	.	T	C	0.608	PASS	NS=349;DP=1783;AC=1;AN=698;AF=0.0014327;RA=1768;AA=5;SR=935|833;SA=1|4;SB=0.2;AB=0.86667;ABR=13;ABA=2;RUN=1;SNP;TS
+20	87555	.	T	A	0.0485	PASS	NS=355;DP=1728;AC=1;AN=710;AF=0.0014085;RA=1715;AA=7;SR=840|875;SA=0|7;SB=0;AB=0.75;ABR=6;ABA=2;RUN=5;SNP;TV
+20	87682	.	G	A	0.887	PASS	NS=355;DP=1823;AC=1;AN=710;AF=0.0014085;RA=1803;AA=4;SR=925|878;SA=2|2;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TS
+20	87790	.	C	T	99.0	PASS	NS=345;DP=1766;AC=16;AN=690;AF=0.023188;RA=1705;AA=49;SR=867|838;SA=32|17;SB=0.65306;AB=0.5102;ABR=50;ABA=46;RUN=2;SNP;TS
+20	88003	.	A	G	1.57	PASS	NS=343;DP=1528;AC=1;AN=686;AF=0.0014577;RA=1524;AA=3;SR=698|826;SA=2|1;SB=0.66667;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	88031	.	T	C	1.06	PASS	NS=347;DP=1727;AC=1;AN=694;AF=0.0014409;RA=1710;AA=4;SR=899|811;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	88058	.	T	C	0.444	PASS	NS=367;DP=2138;AC=1;AN=734;AF=0.0013624;RA=2122;AA=7;SR=1196|926;SA=4|3;SB=0.57143;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS;CpG
+20	88072	.	C	T	99.0	PASS	NS=372;DP=2307;AC=6;AN=744;AF=0.0080645;RA=2286;AA=17;SR=1310|976;SA=6|11;SB=0.35294;AB=0.54545;ABR=18;ABA=15;RUN=1;SNP;TS;CpG
+20	88123	.	C	T	0.301	PASS	NS=357;DP=2104;AC=1;AN=714;AF=0.0014006;RA=2091;AA=5;SR=1202|889;SA=3|2;SB=0.6;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS;CpG
+20	88155	.	T	C	99.0	PASS	NS=364;DP=2136;AC=17;AN=728;AF=0.023352;RA=2082;AA=41;SR=1144|938;SA=30|11;SB=0.73171;AB=0.60494;ABR=49;ABA=32;RUN=1;SNP;TS
+20	88162	.	G	A	47.4	PASS	NS=369;DP=2151;AC=1;AN=738;AF=0.001355;RA=2139;AA=7;SR=1175|964;SA=2|5;SB=0.28571;AB=0.61538;ABR=8;ABA=5;RUN=2;SNP;TS;CpG
+20	88320	.	A	T	0.798	PASS	NS=350;DP=1709;AC=1;AN=700;AF=0.0014286;RA=1700;AA=3;SR=1029|671;SA=1|2;SB=0.33333;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TV
+20	88565	.	A	G	0.361	PASS	NS=331;DP=1574;AC=1;AN=662;AF=0.0015106;RA=1565;AA=3;SR=773|792;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	88647	.	T	G	0.076	PASS	NS=363;DP=2151;AC=1;AN=726;AF=0.0013774;RA=2140;AA=4;SR=1060|1080;SA=0|4;SB=0;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	88750	.	T	C	5.86	PASS	NS=360;DP=1753;AC=1;AN=720;AF=0.0013889;RA=1747;AA=2;SR=887|860;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	88814	.	T	C	0.327	PASS	NS=335;DP=1461;AC=1;AN=670;AF=0.0014925;RA=1447;AA=4;SR=749|698;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TS
+20	88827	.	C	A	99.0	PASS	NS=328;DP=1379;AC=133;AN=656;AF=0.20274;RA=1086;AA=290;SR=531|555;SA=135|155;SB=0.46552;AB=0.4788;ABR=192;ABA=209;RUN=6;SNP;TV
+20	88874	.	C	T	3.41	PASS	NS=346;DP=1464;AC=1;AN=692;AF=0.0014451;RA=1450;AA=3;SR=694|756;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	88880	.	T	C	69.1	PASS	NS=352;DP=1515;AC=9;AN=704;AF=0.012784;RA=1470;AA=16;SR=727|743;SA=11|5;SB=0.6875;AB=0.6;ABR=21;ABA=13;RUN=1;SNP;TS
+20	88924	.	A	T	15.2	PASS	NS=357;DP=1741;AC=2;AN=714;AF=0.0028011;RA=1730;AA=6;SR=863|867;SA=3|3;SB=0.5;AB=0.5;ABR=5;ABA=5;RUN=2;SNP;TV
+20	89032	.	C	T	87.2	PASS	NS=356;DP=1715;AC=1;AN=712;AF=0.0014045;RA=1703;AA=6;SR=753|950;SA=4|2;SB=0.66667;AB=0.16667;ABR=1;ABA=5;RUN=1;SNP;TS;CpG
+20	89057	.	T	C	11.1	PASS	NS=346;DP=1555;AC=1;AN=692;AF=0.0014451;RA=1546;AA=2;SR=644|902;SA=2|0;SB=1;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	89061	.	C	T	3.13	PASS	NS=338;DP=1513;AC=1;AN=676;AF=0.0014793;RA=1503;AA=3;SR=618|885;SA=3|0;SB=1;AB=0.78571;ABR=11;ABA=3;RUN=1;SNP;TS
+20	89208	.	T	C	1.55	PASS	NS=348;DP=1527;AC=1;AN=696;AF=0.0014368;RA=1515;AA=2;SR=795|720;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	89322	.	C	G	0.0545	PASS	NS=296;DP=1182;AC=1;AN=592;AF=0.0016892;RA=1176;AA=2;SR=694|482;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	89442	.	G	T	0.338	PASS	NS=345;DP=1852;AC=1;AN=690;AF=0.0014493;RA=1844;AA=6;SR=1099|745;SA=3|3;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=3;SNP;TV
+20	89517	.	A	T	4.6	PASS	NS=360;DP=2035;AC=1;AN=720;AF=0.0013889;RA=2030;AA=2;SR=1134|896;SA=1|1;SB=0.5;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	89661	.	G	A	47.0	PASS	NS=366;DP=2184;AC=2;AN=732;AF=0.0027322;RA=2175;AA=5;SR=1085|1090;SA=4|1;SB=0.8;AB=0.55556;ABR=5;ABA=4;RUN=1;SNP;TS
+20	89739	.	T	A	0.145	PASS	NS=359;DP=1950;AC=2;AN=718;AF=0.0027855;RA=1928;AA=8;SR=951|977;SA=8|0;SB=1;AB=0.625;ABR=5;ABA=3;RUN=1;SNP;TV
+20	89750	.	G	T	0.157	PASS	NS=361;DP=1896;AC=1;AN=722;AF=0.001385;RA=1882;AA=10;SR=971|911;SA=7|3;SB=0.7;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TV
+20	89784	.	C	T	4.3	PASS	NS=350;DP=1854;AC=1;AN=700;AF=0.0014286;RA=1848;AA=3;SR=1005|843;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	89860	.	C	A	2.95	PASS	NS=371;DP=2493;AC=1;AN=742;AF=0.0013477;RA=2480;AA=9;SR=1216|1264;SA=3|6;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TV
+20	89871	.	T	G	3.36	PASS	NS=364;DP=2415;AC=1;AN=728;AF=0.0013736;RA=2403;AA=9;SR=1148|1255;SA=0|9;SB=0;AB=0.66667;ABR=6;ABA=3;RUN=3;SNP;TV
+20	90008	.	C	A	99.0	PASS	NS=346;DP=1902;AC=69;AN=692;AF=0.099711;RA=1671;AA=228;SR=919|752;SA=125|103;SB=0.54825;AB=0.48;ABR=168;ABA=182;RUN=4;SNP;TV
+20	90187	.	A	C	0.0959	PASS	NS=370;DP=2329;AC=1;AN=740;AF=0.0013514;RA=2306;AA=14;SR=1020|1286;SA=7|7;SB=0.5;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	90407	.	G	A	99.0	PASS	NS=368;DP=2398;AC=1;AN=736;AF=0.0013587;RA=2378;AA=11;SR=1117|1261;SA=3|8;SB=0.27273;AB=0.35714;ABR=5;ABA=9;RUN=2;SNP;TS;CpG
+20	90509	.	G	A	0.677	PASS	NS=370;DP=2346;AC=1;AN=740;AF=0.0013514;RA=2331;AA=2;SR=1216|1115;SA=1|1;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TS
+20	90541	.	C	T	99.0	PASS	NS=371;DP=2334;AC=4;AN=742;AF=0.0053908;RA=2300;AA=23;SR=1229|1071;SA=11|12;SB=0.47826;AB=0.41667;ABR=15;ABA=21;RUN=1;SNP;TS;CpG
+20	90542	.	G	A	0.692	PASS	NS=371;DP=2337;AC=1;AN=742;AF=0.0013477;RA=2318;AA=16;SR=1245|1073;SA=2|14;SB=0.125;AB=0.66667;ABR=6;ABA=3;RUN=3;SNP;TS;CpG
+20	90570	.	G	A	23.7	PASS	NS=370;DP=2343;AC=1;AN=740;AF=0.0013514;RA=2331;AA=6;SR=1221|1110;SA=3|3;SB=0.5;AB=0.42857;ABR=3;ABA=4;RUN=3;SNP;TS
+20	90628	.	G	T	6.52	PASS	NS=371;DP=2396;AC=1;AN=742;AF=0.0013477;RA=2379;AA=6;SR=1154|1225;SA=1|5;SB=0.16667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	90688	.	T	C	0.367	PASS	NS=370;DP=2304;AC=1;AN=740;AF=0.0013514;RA=2272;AA=15;SR=946|1326;SA=6|9;SB=0.4;AB=0.84615;ABR=11;ABA=2;RUN=2;SNP;TS
+20	90752	.	A	C	0.122	PASS	NS=370;DP=2411;AC=1;AN=740;AF=0.0013514;RA=2399;AA=6;SR=1210|1189;SA=6|0;SB=1;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	90795	.	C	T	0.18	PASS	NS=368;DP=2454;AC=1;AN=736;AF=0.0013587;RA=2443;AA=4;SR=1318|1125;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	90814	.	T	C	43.3	PASS	NS=368;DP=2403;AC=4;AN=736;AF=0.0054348;RA=2388;AA=10;SR=1294|1094;SA=4|6;SB=0.4;AB=0.6;ABR=12;ABA=8;RUN=1;SNP;TS
+20	90826	.	T	A	0.0721	PASS	NS=367;DP=2295;AC=1;AN=734;AF=0.0013624;RA=2287;AA=5;SR=1231|1056;SA=3|2;SB=0.6;AB=0.83333;ABR=10;ABA=2;RUN=4;SNP;TV
+20	90984	.	A	G	99.0	PASS	NS=361;DP=2035;AC=150;AN=722;AF=0.20776;RA=1619;AA=410;SR=766|853;SA=181|229;SB=0.44146;AB=0.5;ABR=331;ABA=330;RUN=1;SNP;TS
+20	91053	.	G	A	1.89	PASS	NS=361;DP=2062;AC=1;AN=722;AF=0.001385;RA=2051;AA=4;SR=1080|971;SA=3|1;SB=0.75;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	91072	.	G	A	9.59	PASS	NS=361;DP=2180;AC=1;AN=722;AF=0.001385;RA=2166;AA=8;SR=1078|1088;SA=1|7;SB=0.125;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	91088	.	C	T	99.0	PASS	NS=363;DP=2177;AC=616;AN=726;AF=0.84848;RA=386;AA=1782;SR=187|199;SA=833|949;SB=0.46745;AB=0.49684;ABR=236;ABA=239;RUN=1;SNP;TS
+20	91217	.	T	C	0.0587	PASS	NS=369;DP=2369;AC=2;AN=738;AF=0.00271;RA=2361;AA=5;SR=1348|1013;SA=3|2;SB=0.6;AB=0.8;ABR=12;ABA=3;RUN=1;SNP;TS;CpG
+20	91227	.	C	T	99.0	PASS	NS=369;DP=2355;AC=25;AN=738;AF=0.033875;RA=2274;AA=74;SR=1302|972;SA=44|30;SB=0.59459;AB=0.46018;ABR=52;ABA=61;RUN=3;SNP;TS
+20	91346	.	G	A	99.0	PASS	NS=369;DP=2207;AC=150;AN=738;AF=0.20325;RA=1744;AA=456;SR=974|770;SA=250|206;SB=0.54825;AB=0.49656;ABR=361;ABA=363;RUN=2;SNP;TS
+20	91474	.	C	A	0.361	PASS	NS=369;DP=2458;AC=1;AN=738;AF=0.001355;RA=2449;AA=4;SR=1260|1189;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=5;SNP;TV
+20	91497	.	A	G	0.291	PASS	NS=370;DP=2513;AC=1;AN=740;AF=0.0013514;RA=2504;AA=3;SR=1280|1224;SA=2|1;SB=0.66667;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS;CpG
+20	91508	.	G	A	99.0	PASS	NS=369;DP=2483;AC=621;AN=738;AF=0.84146;RA=424;AA=2039;SR=222|202;SA=1036|1003;SB=0.50809;AB=0.52604;ABR=303;ABA=270;RUN=1;SNP;TS
+20	91707	.	C	T	99.0	PASS	NS=369;DP=2273;AC=112;AN=738;AF=0.15176;RA=1930;AA=291;SR=948|982;SA=137|154;SB=0.47079;AB=0.53738;ABR=230;ABA=197;RUN=1;SNP;TS
+20	91716	.	C	T	99.0	PASS	NS=368;DP=2309;AC=6;AN=736;AF=0.0081522;RA=2285;AA=18;SR=1117|1168;SA=7|11;SB=0.38889;AB=0.60465;ABR=26;ABA=17;RUN=2;SNP;TS
+20	91718	.	C	T	61.6	PASS	NS=368;DP=2338;AC=3;AN=736;AF=0.0040761;RA=2322;AA=10;SR=1129|1193;SA=8|2;SB=0.8;AB=0.5;ABR=9;ABA=9;RUN=2;SNP;TS
+20	91778	.	T	A	2.05	PASS	NS=366;DP=2459;AC=1;AN=732;AF=0.0013661;RA=2444;AA=7;SR=1123|1321;SA=5|2;SB=0.71429;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TV
+20	91863	.	A	G	1.48	PASS	NS=364;DP=2501;AC=1;AN=728;AF=0.0013736;RA=2488;AA=4;SR=1261|1227;SA=3|1;SB=0.75;AB=0.6;ABR=3;ABA=2;RUN=4;SNP;TS
+20	91920	.	C	A	1.42	PASS	NS=368;DP=2547;AC=1;AN=736;AF=0.0013587;RA=2530;AA=6;SR=1225|1305;SA=3|3;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	91937	.	T	A	15.2	PASS	NS=368;DP=2523;AC=1;AN=736;AF=0.0013587;RA=2492;AA=7;SR=1179|1313;SA=5|2;SB=0.71429;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	91951	.	G	A	99.0	PASS	NS=364;DP=2528;AC=3;AN=728;AF=0.0041209;RA=2504;AA=12;SR=1185|1319;SA=5|7;SB=0.41667;AB=0.62069;ABR=18;ABA=11;RUN=1;SNP;TS
+20	91971	.	G	A	99.0	PASS	NS=367;DP=2448;AC=4;AN=734;AF=0.0054496;RA=2412;AA=26;SR=1136|1276;SA=9|17;SB=0.34615;AB=0.54545;ABR=24;ABA=20;RUN=1;SNP;TS
+20	91987	.	A	C	2.61	PASS	NS=366;DP=2461;AC=1;AN=732;AF=0.0013661;RA=2447;AA=8;SR=1115|1332;SA=5|3;SB=0.625;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	91991	.	G	C	99.0	PASS	NS=367;DP=2461;AC=12;AN=734;AF=0.016349;RA=2421;AA=30;SR=1104|1317;SA=12|18;SB=0.4;AB=0.525;ABR=21;ABA=19;RUN=2;SNP;TV
+20	92037	.	G	T	18.0	PASS	NS=369;DP=2484;AC=1;AN=738;AF=0.001355;RA=2465;AA=11;SR=1128|1337;SA=6|5;SB=0.54545;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	92080	.	T	C	99.0	PASS	NS=363;DP=2461;AC=10;AN=726;AF=0.013774;RA=2425;AA=32;SR=1182|1243;SA=15|17;SB=0.46875;AB=0.46341;ABR=19;ABA=22;RUN=1;SNP;TS
+20	92091	.	C	A	3.93	PASS	NS=363;DP=2512;AC=1;AN=726;AF=0.0013774;RA=2502;AA=3;SR=1238|1264;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TV
+20	92171	.	T	G	0.0778	PASS	NS=361;DP=2344;AC=1;AN=722;AF=0.001385;RA=2332;AA=6;SR=1179|1153;SA=1|5;SB=0.16667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	92207	.	T	C	1.8	PASS	NS=360;DP=2413;AC=1;AN=720;AF=0.0013889;RA=2409;AA=2;SR=1146|1263;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS;CpG
+20	92366	.	A	G	99.0	PASS	NS=359;DP=2411;AC=131;AN=718;AF=0.18245;RA=1937;AA=464;SR=930|1007;SA=219|245;SB=0.47198;AB=0.50995;ABR=282;ABA=269;RUN=1;SNP;TS
+20	92383	.	T	C	0.775	PASS	NS=364;DP=2395;AC=1;AN=728;AF=0.0013736;RA=2377;AA=6;SR=1138|1239;SA=5|1;SB=0.83333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	92421	.	A	C	8.1	PASS	NS=366;DP=2327;AC=1;AN=732;AF=0.0013661;RA=2315;AA=6;SR=1224|1091;SA=5|1;SB=0.83333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	92441	.	T	C	2.12	PASS	NS=364;DP=2420;AC=1;AN=728;AF=0.0013736;RA=2406;AA=6;SR=1351|1055;SA=2|4;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	92492	.	G	A	0.0468	PASS	NS=366;DP=2377;AC=1;AN=732;AF=0.0013661;RA=2366;AA=2;SR=1174|1192;SA=1|1;SB=0.5;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TS
+20	92527	.	A	G	99.0	PASS	NS=371;DP=2105;AC=644;AN=742;AF=0.86792;RA=317;AA=1752;SR=144|173;SA=822|930;SB=0.46918;AB=0.51415;ABR=218;ABA=198;RUN=1;SNP;TS;CpG
+20	92712	.	T	C	0.198	PASS	NS=361;DP=2260;AC=1;AN=722;AF=0.001385;RA=2241;AA=10;SR=1190|1051;SA=6|4;SB=0.6;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	92774	.	T	C	0.403	PASS	NS=364;DP=2560;AC=1;AN=728;AF=0.0013736;RA=2548;AA=3;SR=1242|1306;SA=2|1;SB=0.66667;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TS
+20	92816	.	T	C	0.817	PASS	NS=369;DP=2431;AC=1;AN=738;AF=0.001355;RA=2407;AA=12;SR=1073|1334;SA=2|10;SB=0.16667;AB=0.77778;ABR=7;ABA=2;RUN=3;SNP;TS
+20	92865	.	T	C	10.2	PASS	NS=346;DP=2171;AC=2;AN=692;AF=0.0028902;RA=2155;AA=5;SR=1041|1114;SA=3|2;SB=0.6;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS;CpG
+20	92891	.	A	G	99.0	PASS	NS=353;DP=2023;AC=99;AN=706;AF=0.14023;RA=1744;AA=258;SR=877|867;SA=137|121;SB=0.53101;AB=0.47804;ABR=185;ABA=200;RUN=1;SNP;TS
+20	92972	.	G	A	9.84	PASS	NS=362;DP=2148;AC=1;AN=724;AF=0.0013812;RA=2140;AA=6;SR=1068|1072;SA=2|4;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	93066	.	C	T	0.0559	PASS	NS=356;DP=2150;AC=1;AN=712;AF=0.0014045;RA=2137;AA=3;SR=1048|1089;SA=1|2;SB=0.33333;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TS
+20	93114	.	C	T	0.601	PASS	NS=356;DP=2138;AC=1;AN=712;AF=0.0014045;RA=2132;AA=2;SR=970|1162;SA=1|1;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TS
+20	93169	.	C	T	99.0	PASS	NS=352;DP=2227;AC=25;AN=704;AF=0.035511;RA=2133;AA=88;SR=999|1134;SA=36|52;SB=0.40909;AB=0.44681;ABR=63;ABA=77;RUN=1;SNP;TS
+20	93175	.	C	A	0.159	PASS	NS=359;DP=2283;AC=1;AN=718;AF=0.0013928;RA=2272;AA=5;SR=1057|1215;SA=2|3;SB=0.4;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TV
+20	93327	.	T	C	99.0	PASS	NS=352;DP=1862;AC=25;AN=704;AF=0.035511;RA=1797;AA=60;SR=792|1005;SA=20|40;SB=0.33333;AB=0.53535;ABR=53;ABA=46;RUN=3;SNP;TS
+20	93343	.	T	C	1.43	PASS	NS=351;DP=1897;AC=1;AN=702;AF=0.0014245;RA=1886;AA=3;SR=804|1082;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	93356	.	C	T	0.0835	PASS	NS=365;DP=1919;AC=1;AN=730;AF=0.0013699;RA=1910;AA=2;SR=804|1106;SA=1|1;SB=0.5;AB=0.78571;ABR=11;ABA=2;RUN=1;SNP;TS
+20	93389	.	A	G	10.9	PASS	NS=361;DP=1775;AC=2;AN=722;AF=0.0027701;RA=1758;AA=5;SR=744|1014;SA=3|2;SB=0.6;AB=0.5;ABR=4;ABA=4;RUN=1;SNP;TS
+20	93406	.	T	C	99.0	PASS	NS=350;DP=1595;AC=7;AN=700;AF=0.01;RA=1573;AA=18;SR=651|922;SA=10|8;SB=0.55556;AB=0.55;ABR=22;ABA=18;RUN=1;SNP;TS
+20	93428	.	T	C	3.27	PASS	NS=334;DP=1422;AC=1;AN=668;AF=0.001497;RA=1415;AA=3;SR=565|850;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS;CpG
+20	93440	.	A	G	99.0	PASS	NS=327;DP=1360;AC=157;AN=654;AF=0.24006;RA=1041;AA=315;SR=395|646;SA=136|179;SB=0.43175;AB=0.50992;ABR=180;ABA=172;RUN=2;SNP;TS
+20	93499	.	T	C	99.0	PASS	NS=365;DP=1887;AC=82;AN=730;AF=0.11233;RA=1681;AA=203;SR=679|1002;SA=79|124;SB=0.38916;AB=0.48855;ABR=128;ABA=134;RUN=1;SNP;TS;CpG
+20	93684	.	A	G	60.8	PASS	NS=182;DP=336;AC=34;AN=364;AF=0.093407;RA=256;AA=30;SR=174|82;SA=19|11;SB=0.63333;AB=0.34783;ABR=8;ABA=14;RUN=1;SNP;TS;CpG
+20	93704	.	G	C	64.2	PASS	NS=230;DP=445;AC=12;AN=460;AF=0.026087;RA=428;AA=12;SR=245|183;SA=4|8;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	93718	.	T	C	99.0	PASS	NS=260;DP=565;AC=55;AN=520;AF=0.10577;RA=498;AA=64;SR=267|231;SA=37|27;SB=0.57812;AB=0.5;ABR=30;ABA=30;RUN=2;SNP;TS
+20	93739	.	A	G	99.0	PASS	NS=278;DP=706;AC=75;AN=556;AF=0.13489;RA=582;AA=91;SR=316|266;SA=55|36;SB=0.6044;AB=0.48235;ABR=41;ABA=44;RUN=1;SNP;TS;CpG
+20	93931	.	G	A	99.0	PASS	NS=325;DP=1064;AC=167;AN=650;AF=0.25692;RA=811;AA=248;SR=366|445;SA=126|122;SB=0.50806;AB=0.55128;ABR=129;ABA=105;RUN=1;SNP;TS
+20	94019	.	C	T	0.498	PASS	NS=360;DP=1907;AC=1;AN=720;AF=0.0013889;RA=1900;AA=5;SR=1175|725;SA=3|2;SB=0.6;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	94036	.	G	A	99.0	PASS	NS=355;DP=1929;AC=25;AN=710;AF=0.035211;RA=1850;AA=68;SR=1138|712;SA=44|24;SB=0.64706;AB=0.48958;ABR=47;ABA=49;RUN=1;SNP;TS
+20	94087	.	T	C	25.9	PASS	NS=364;DP=1913;AC=2;AN=728;AF=0.0027473;RA=1901;AA=7;SR=1020|881;SA=4|3;SB=0.57143;AB=0.5;ABR=4;ABA=4;RUN=2;SNP;TS;CpG
+20	94091	.	T	C	99.0	PASS	NS=363;DP=1926;AC=93;AN=726;AF=0.1281;RA=1686;AA=228;SR=919|767;SA=116|112;SB=0.50877;AB=0.4822;ABR=149;ABA=156;RUN=1;SNP;TS
+20	94179	.	G	A	9.12	PASS	NS=356;DP=1627;AC=1;AN=712;AF=0.0014045;RA=1617;AA=3;SR=942|675;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	94256	.	A	C	0.101	PASS	NS=355;DP=1594;AC=1;AN=710;AF=0.0014085;RA=1565;AA=4;SR=725|840;SA=3|1;SB=0.75;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	94307	.	C	A	8.46	PASS	NS=339;DP=1691;AC=1;AN=678;AF=0.0014749;RA=1675;AA=4;SR=703|972;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	94528	.	T	G	99.0	PASS	NS=349;DP=1836;AC=84;AN=698;AF=0.12034;RA=1656;AA=177;SR=898|758;SA=96|81;SB=0.54237;AB=0.52747;ABR=144;ABA=129;RUN=1;SNP;TV
+20	94588	.	G	A	0.244	PASS	NS=364;DP=2022;AC=2;AN=728;AF=0.0027473;RA=2006;AA=7;SR=1153|853;SA=5|2;SB=0.71429;AB=0.80952;ABR=17;ABA=3;RUN=1;SNP;TS
+20	94592	.	T	A	99.0	PASS	NS=365;DP=2021;AC=89;AN=730;AF=0.12192;RA=1806;AA=212;SR=1024|782;SA=123|89;SB=0.58019;AB=0.5216;ABR=169;ABA=155;RUN=3;SNP;TV
+20	94624	.	G	T	99.0	PASS	NS=361;DP=1991;AC=15;AN=722;AF=0.020776;RA=1949;AA=39;SR=1051|898;SA=25|14;SB=0.64103;AB=0.5;ABR=17;ABA=17;RUN=2;SNP;TV
+20	94704	.	G	A	99.0	PASS	NS=361;DP=2028;AC=2;AN=722;AF=0.0027701;RA=2015;AA=8;SR=958|1057;SA=4|4;SB=0.5;AB=0.41667;ABR=5;ABA=7;RUN=1;SNP;TS;CpG
+20	94717	.	T	C	57.7	PASS	NS=365;DP=1994;AC=1;AN=730;AF=0.0013699;RA=1985;AA=6;SR=926|1059;SA=4|2;SB=0.66667;AB=0.55556;ABR=5;ABA=4;RUN=1;SNP;TS
+20	94760	.	A	G	99.0	PASS	NS=356;DP=2012;AC=22;AN=712;AF=0.030899;RA=1957;AA=50;SR=987|970;SA=19|31;SB=0.38;AB=0.55046;ABR=60;ABA=48;RUN=2;SNP;TS
+20	94794	.	T	C	0.713	PASS	NS=365;DP=2100;AC=1;AN=730;AF=0.0013699;RA=2091;AA=2;SR=1072|1019;SA=1|1;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	94952	.	G	T	99.0	PASS	NS=360;DP=2103;AC=157;AN=720;AF=0.21806;RA=1678;AA=422;SR=854|824;SA=209|213;SB=0.49526;AB=0.49323;ABR=255;ABA=262;RUN=3;SNP;TV
+20	94973	.	T	A	0.162	PASS	NS=363;DP=2064;AC=1;AN=726;AF=0.0013774;RA=2059;AA=2;SR=1059|1000;SA=1|1;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	95052	.	T	C	54.2	PASS	NS=361;DP=1889;AC=1;AN=722;AF=0.001385;RA=1877;AA=5;SR=937|940;SA=2|3;SB=0.4;AB=0.33333;ABR=2;ABA=4;RUN=1;SNP;TS
+20	95093	.	T	G	99.0	PASS	NS=364;DP=1944;AC=95;AN=728;AF=0.13049;RA=1730;AA=212;SR=840|890;SA=99|113;SB=0.46698;AB=0.46619;ABR=131;ABA=150;RUN=1;SNP;TV
+20	95104	.	A	G	4.49	PASS	NS=362;DP=1930;AC=1;AN=724;AF=0.0013812;RA=1921;AA=3;SR=930|991;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	95186	.	T	C	6.33	PASS	NS=359;DP=1991;AC=1;AN=718;AF=0.0013928;RA=1986;AA=3;SR=977|1009;SA=1|2;SB=0.33333;AB=0;ABR=0;ABA=3;RUN=1;SNP;TS
+20	95249	.	C	G	1.12	PASS	NS=363;DP=1934;AC=1;AN=726;AF=0.0013774;RA=1923;AA=4;SR=955|968;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	95360	.	C	G	0.0671	PASS	NS=365;DP=2104;AC=1;AN=730;AF=0.0013699;RA=2088;AA=3;SR=1177|911;SA=2|1;SB=0.66667;AB=0.86667;ABR=13;ABA=2;RUN=1;SNP;TV
+20	95601	.	A	G	10.6	PASS	NS=368;DP=2205;AC=1;AN=736;AF=0.0013587;RA=2172;AA=14;SR=1077|1095;SA=2|12;SB=0.14286;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	95603	.	T	C	0.0469	PASS	NS=347;DP=1778;AC=1;AN=694;AF=0.0014409;RA=1758;AA=5;SR=858|900;SA=1|4;SB=0.2;AB=0.8;ABR=8;ABA=2;RUN=3;SNP;TS
+20	95619	.	C	T	33.4	PASS	NS=368;DP=2234;AC=2;AN=736;AF=0.0027174;RA=2205;AA=8;SR=1105|1100;SA=7|1;SB=0.875;AB=0.57143;ABR=8;ABA=6;RUN=1;SNP;TS
+20	95627	.	C	T	99.0	PASS	NS=368;DP=2216;AC=6;AN=736;AF=0.0081522;RA=2175;AA=22;SR=1082|1093;SA=10|12;SB=0.45455;AB=0.40541;ABR=15;ABA=21;RUN=1;SNP;TS;CpG
+20	95781	.	A	T	0.36	PASS	NS=363;DP=2225;AC=1;AN=726;AF=0.0013774;RA=2185;AA=10;SR=1083|1102;SA=6|4;SB=0.6;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	95836	.	T	C	5.74	PASS	NS=365;DP=2341;AC=1;AN=730;AF=0.0013699;RA=2320;AA=11;SR=1153|1167;SA=7|4;SB=0.63636;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	95989	.	C	T	0.0518	PASS	NS=364;DP=2264;AC=1;AN=728;AF=0.0013736;RA=2235;AA=5;SR=1159|1076;SA=4|1;SB=0.8;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	96026	.	C	T	83.3	PASS	NS=362;DP=2328;AC=2;AN=724;AF=0.0027624;RA=2304;AA=10;SR=1145|1159;SA=4|6;SB=0.4;AB=0.57895;ABR=11;ABA=8;RUN=2;SNP;TS
+20	96038	.	G	C	0.823	PASS	NS=362;DP=2311;AC=2;AN=724;AF=0.0027624;RA=2279;AA=19;SR=1095|1184;SA=9|10;SB=0.47368;AB=0.5;ABR=4;ABA=4;RUN=2;SNP;TV
+20	96141	.	T	C	0.0737	PASS	NS=367;DP=2161;AC=1;AN=734;AF=0.0013624;RA=2126;AA=13;SR=1101|1025;SA=13|0;SB=1;AB=0.75;ABR=3;ABA=1;RUN=1;SNP;TS;CpG
+20	96166	.	C	T	1.2	PASS	NS=367;DP=2187;AC=2;AN=734;AF=0.0027248;RA=2169;AA=7;SR=1101|1068;SA=3|4;SB=0.42857;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TS;CpG
+20	96213	.	C	A	0.0772	PASS	NS=359;DP=2247;AC=1;AN=718;AF=0.0013928;RA=2231;AA=8;SR=994|1237;SA=3|5;SB=0.375;AB=0.85714;ABR=12;ABA=2;RUN=1;SNP;TV
+20	96325	.	C	T	0.047	PASS	NS=364;DP=2278;AC=1;AN=728;AF=0.0013736;RA=2256;AA=8;SR=1018|1238;SA=5|3;SB=0.625;AB=0.8;ABR=4;ABA=1;RUN=1;SNP;TS
+20	96369	.	A	G	99.0	PASS	NS=366;DP=2148;AC=9;AN=732;AF=0.012295;RA=2087;AA=37;SR=1003|1084;SA=14|23;SB=0.37838;AB=0.5;ABR=21;ABA=20;RUN=2;SNP;TS;CpG
+20	96421	.	G	C	1.04	PASS	NS=363;DP=2132;AC=1;AN=726;AF=0.0013774;RA=2103;AA=12;SR=943|1160;SA=6|6;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	96497	.	C	G	16.9	PASS	NS=362;DP=1926;AC=2;AN=724;AF=0.0027624;RA=1908;AA=6;SR=907|1001;SA=5|1;SB=0.83333;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TV
+20	96579	.	G	A	24.7	PASS	NS=359;DP=1704;AC=5;AN=718;AF=0.0069638;RA=1670;AA=17;SR=848|822;SA=9|8;SB=0.52941;AB=0.52632;ABR=10;ABA=9;RUN=1;SNP;TS
+20	96646	.	G	A	0.141	PASS	NS=364;DP=1850;AC=2;AN=728;AF=0.0027473;RA=1823;AA=6;SR=961|862;SA=4|2;SB=0.66667;AB=0.57143;ABR=4;ABA=3;RUN=2;SNP;TS
+20	96670	.	C	T	2.72	PASS	NS=366;DP=1963;AC=1;AN=732;AF=0.0013661;RA=1953;AA=4;SR=1050|903;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	96695	.	C	T	13.0	PASS	NS=364;DP=1927;AC=2;AN=728;AF=0.0027473;RA=1894;AA=13;SR=1024|870;SA=12|1;SB=0.92308;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TS
+20	96815	.	A	G	0.711	PASS	NS=371;DP=2127;AC=1;AN=742;AF=0.0013477;RA=2098;AA=18;SR=1051|1047;SA=1|17;SB=0.055556;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS;CpG
+20	96857	.	T	A	0.885	PASS	NS=366;DP=2378;AC=1;AN=732;AF=0.0013661;RA=2341;AA=12;SR=1217|1124;SA=11|1;SB=0.91667;AB=0.57143;ABR=4;ABA=2;RUN=3;SNP;TV
+20	96872	.	G	T	0.0924	PASS	NS=368;DP=2394;AC=1;AN=736;AF=0.0013587;RA=2385;AA=5;SR=1289|1096;SA=0|5;SB=0;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TV
+20	96891	.	C	T	4.45	PASS	NS=365;DP=2401;AC=1;AN=730;AF=0.0013699;RA=2387;AA=4;SR=1293|1094;SA=1|3;SB=0.25;AB=0;ABR=0;ABA=2;RUN=2;SNP;TS
+20	96923	.	C	A	99.0	PASS	NS=363;DP=2448;AC=20;AN=726;AF=0.027548;RA=2358;AA=85;SR=1286|1072;SA=56|29;SB=0.65882;AB=0.45385;ABR=59;ABA=71;RUN=2;SNP;TV
+20	96931	.	A	G	99.0	PASS	NS=365;DP=2424;AC=256;AN=730;AF=0.35068;RA=1586;AA=831;SR=882|704;SA=463|368;SB=0.55716;AB=0.50916;ABR=389;ABA=373;RUN=1;SNP;TS;CpG
+20	97048	.	G	T	0.0453	PASS	NS=367;DP=2268;AC=1;AN=734;AF=0.0013624;RA=2250;AA=9;SR=1094|1156;SA=2|7;SB=0.22222;AB=0.66667;ABR=2;ABA=1;RUN=2;SNP;TV
+20	97122	.	C	T	99.0	PASS	NS=366;DP=2087;AC=168;AN=732;AF=0.22951;RA=1606;AA=470;SR=818|788;SA=230|240;SB=0.48936;AB=0.49234;ABR=257;ABA=261;RUN=1;SNP;TS
+20	97227	.	A	C	87.6	PASS	NS=358;DP=1952;AC=2;AN=716;AF=0.0027933;RA=1912;AA=35;SR=1012|900;SA=33|2;SB=0.94286;AB=0.42857;ABR=6;ABA=8;RUN=2;SNP;TV
+20	97271	.	A	T	10.8	PASS	NS=367;DP=2260;AC=1;AN=734;AF=0.0013624;RA=2241;AA=3;SR=1067|1174;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	97285	.	T	C	0.442	PASS	NS=363;DP=2215;AC=1;AN=726;AF=0.0013774;RA=2169;AA=24;SR=1010|1159;SA=6|18;SB=0.25;AB=0.6;ABR=3;ABA=2;RUN=3;SNP;TS
+20	97371	.	G	A	99.0	PASS	NS=365;DP=2386;AC=16;AN=730;AF=0.021918;RA=2319;AA=54;SR=1350|969;SA=26|28;SB=0.48148;AB=0.48958;ABR=47;ABA=49;RUN=1;SNP;TS
+20	97394	.	A	G	99.0	PASS	NS=346;DP=2074;AC=185;AN=692;AF=0.26734;RA=1552;AA=509;SR=904|648;SA=280|229;SB=0.5501;AB=0.46933;ABR=176;ABA=199;RUN=2;SNP;TS;CpG
+20	97458	.	A	G	68.2	PASS	NS=365;DP=2315;AC=1;AN=730;AF=0.0013699;RA=2304;AA=7;SR=1121|1183;SA=3|4;SB=0.42857;AB=0.45455;ABR=5;ABA=6;RUN=2;SNP;TS
+20	97465	.	G	C	2.86	PASS	NS=365;DP=2309;AC=1;AN=730;AF=0.0013699;RA=2285;AA=9;SR=1111|1174;SA=1|8;SB=0.11111;AB=0.6;ABR=3;ABA=2;RUN=3;SNP;TV
+20	97526	.	C	G	0.0531	PASS	NS=370;DP=2381;AC=1;AN=740;AF=0.0013514;RA=2370;AA=2;SR=1223|1147;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	97564	.	T	G	0.0531	PASS	NS=369;DP=2445;AC=1;AN=738;AF=0.001355;RA=2425;AA=8;SR=1233|1192;SA=0|8;SB=0;AB=0.78571;ABR=11;ABA=3;RUN=1;SNP;TV
+20	97804	.	G	C	12.2	PASS	NS=367;DP=2119;AC=2;AN=734;AF=0.0027248;RA=2109;AA=4;SR=1004|1105;SA=3|1;SB=0.75;AB=0.6;ABR=6;ABA=4;RUN=1;SNP;TV
+20	97915	.	A	T	0.991	PASS	NS=359;DP=1872;AC=1;AN=718;AF=0.0013928;RA=1857;AA=5;SR=936|921;SA=1|4;SB=0.2;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	98008	.	T	C	99.0	PASS	NS=335;DP=1359;AC=19;AN=670;AF=0.028358;RA=1305;AA=48;SR=640|665;SA=24|24;SB=0.5;AB=0.48571;ABR=34;ABA=36;RUN=3;SNP;TS
+20	98061	.	G	T	0.0607	PASS	NS=331;DP=1432;AC=1;AN=662;AF=0.0015106;RA=1423;AA=5;SR=794|629;SA=3|2;SB=0.6;AB=0.9;ABR=18;ABA=2;RUN=1;SNP;TV
+20	98439	.	T	C	99.0	PASS	NS=369;DP=2319;AC=29;AN=738;AF=0.039295;RA=2221;AA=84;SR=1227|994;SA=55|29;SB=0.65476;AB=0.56627;ABR=94;ABA=71;RUN=1;SNP;TS
+20	98447	.	T	G	99.0	PASS	NS=371;DP=2416;AC=29;AN=742;AF=0.039084;RA=2311;AA=89;SR=1239|1072;SA=49|40;SB=0.55056;AB=0.52941;ABR=81;ABA=72;RUN=2;SNP;TV
+20	98491	.	C	T	99.0	PASS	NS=370;DP=2385;AC=2;AN=740;AF=0.0027027;RA=2364;AA=8;SR=1167|1197;SA=6|2;SB=0.75;AB=0.55556;ABR=10;ABA=8;RUN=1;SNP;TS
+20	98688	.	T	C	99.0	PASS	NS=362;DP=2160;AC=28;AN=724;AF=0.038674;RA=2090;AA=64;SR=1092|998;SA=29|35;SB=0.45312;AB=0.54839;ABR=68;ABA=55;RUN=2;SNP;TS;CpG
+20	98741	.	C	T	99.0	PASS	NS=367;DP=2469;AC=26;AN=734;AF=0.035422;RA=2377;AA=81;SR=1083|1294;SA=40|41;SB=0.49383;AB=0.51538;ABR=67;ABA=63;RUN=2;SNP;TS;CpG
+20	98792	.	G	C	99.0	PASS	NS=371;DP=2401;AC=32;AN=742;AF=0.043127;RA=2291;AA=92;SR=1124|1167;SA=41|51;SB=0.44565;AB=0.52632;ABR=80;ABA=70;RUN=1;SNP;TV
+20	98796	.	G	T	0.637	PASS	NS=369;DP=2424;AC=1;AN=738;AF=0.001355;RA=2407;AA=13;SR=1185|1222;SA=10|3;SB=0.76923;AB=0.72727;ABR=8;ABA=3;RUN=4;SNP;TV
+20	98905	.	T	C	0.0446	PASS	NS=368;DP=2477;AC=1;AN=736;AF=0.0013587;RA=2462;AA=9;SR=1319|1143;SA=3|6;SB=0.33333;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TS
+20	98908	.	A	T	6.25	PASS	NS=370;DP=2483;AC=1;AN=740;AF=0.0013514;RA=2471;AA=7;SR=1328|1143;SA=3|4;SB=0.42857;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	98930	.	G	A	99.0	PASS	NS=370;DP=2431;AC=159;AN=740;AF=0.21486;RA=1920;AA=502;SR=1041|879;SA=269|233;SB=0.53586;AB=0.54773;ABR=350;ABA=287;RUN=1;SNP;TS
+20	98957	.	A	G	99.0	PASS	NS=370;DP=2423;AC=2;AN=740;AF=0.0027027;RA=2404;AA=13;SR=1270|1134;SA=6|7;SB=0.46154;AB=0.41176;ABR=7;ABA=10;RUN=1;SNP;TS
+20	98991	.	T	C	4.43	PASS	NS=370;DP=2386;AC=1;AN=740;AF=0.0013514;RA=2377;AA=3;SR=1217|1160;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=3;SNP;TS
+20	99132	.	G	T	0.374	PASS	NS=371;DP=2502;AC=1;AN=742;AF=0.0013477;RA=2492;AA=6;SR=1292|1200;SA=3|3;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TV
+20	99200	.	C	G	47.2	PASS	NS=368;DP=2476;AC=1;AN=736;AF=0.0013587;RA=2464;AA=5;SR=1140|1324;SA=2|3;SB=0.4;AB=0.33333;ABR=2;ABA=4;RUN=1;SNP;TV
+20	99228	.	C	T	48.9	PASS	NS=368;DP=2404;AC=4;AN=736;AF=0.0054348;RA=2382;AA=12;SR=1087|1295;SA=5|7;SB=0.41667;AB=0.5;ABR=9;ABA=9;RUN=4;SNP;TS
+20	99318	.	G	T	0.264	PASS	NS=368;DP=2147;AC=1;AN=736;AF=0.0013587;RA=2135;AA=8;SR=914|1221;SA=6|2;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	99500	.	C	A	99.0	PASS	NS=366;DP=2130;AC=35;AN=732;AF=0.047814;RA=2048;AA=75;SR=792|1256;SA=26|49;SB=0.34667;AB=0.512;ABR=64;ABA=60;RUN=1;SNP;TV
+20	99554	.	C	A	5.17	PASS	NS=365;DP=2104;AC=1;AN=730;AF=0.0013699;RA=2095;AA=4;SR=846|1249;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	99563	.	T	C	0.153	PASS	NS=365;DP=2130;AC=1;AN=730;AF=0.0013699;RA=2126;AA=3;SR=906|1220;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	99612	.	A	G	1.43	PASS	NS=370;DP=2190;AC=1;AN=740;AF=0.0013514;RA=2185;AA=2;SR=1213|972;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TS
+20	99627	.	G	T	1.72	PASS	NS=369;DP=2210;AC=1;AN=738;AF=0.001355;RA=2203;AA=6;SR=1239|964;SA=3|3;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	99632	.	T	C	2.53	PASS	NS=369;DP=2206;AC=1;AN=738;AF=0.001355;RA=2197;AA=3;SR=1231|966;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	99653	.	C	A	0.0845	PASS	NS=366;DP=2296;AC=1;AN=732;AF=0.0013661;RA=2287;AA=5;SR=1195|1092;SA=3|2;SB=0.6;AB=0.77778;ABR=7;ABA=2;RUN=4;SNP;TV
+20	99667	.	C	T	99.0	PASS	NS=367;DP=2225;AC=5;AN=734;AF=0.006812;RA=2197;AA=21;SR=1101|1096;SA=9|12;SB=0.42857;AB=0.54545;ABR=24;ABA=20;RUN=1;SNP;TS
+20	99704	.	T	C	0.0612	PASS	NS=370;DP=2145;AC=1;AN=740;AF=0.0013514;RA=2141;AA=2;SR=997|1144;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	99734	.	C	T	0.0662	PASS	NS=366;DP=2113;AC=1;AN=732;AF=0.0013661;RA=2101;AA=6;SR=956|1145;SA=4|2;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	99801	.	G	A	99.0	PASS	NS=367;DP=1968;AC=88;AN=734;AF=0.11989;RA=1750;AA=214;SR=977|773;SA=103|111;SB=0.48131;AB=0.46021;ABR=133;ABA=154;RUN=1;SNP;TS
+20	99919	.	A	T	4.0	PASS	NS=359;DP=2099;AC=1;AN=718;AF=0.0013928;RA=2092;AA=2;SR=1038|1054;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	100030	.	G	T	2.4	PASS	NS=361;DP=1980;AC=1;AN=722;AF=0.001385;RA=1969;AA=9;SR=986|983;SA=6|3;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=3;SNP;TV
+20	100133	.	T	C	2.2	PASS	NS=359;DP=2041;AC=1;AN=718;AF=0.0013928;RA=2033;AA=3;SR=936|1097;SA=2|1;SB=0.66667;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TS
+20	100134	.	A	G	72.1	PASS	NS=360;DP=2052;AC=1;AN=720;AF=0.0013889;RA=2042;AA=5;SR=942|1100;SA=2|3;SB=0.4;AB=0.33333;ABR=2;ABA=4;RUN=1;SNP;TS
+20	100172	.	G	C	16.2	PASS	NS=356;DP=2127;AC=1;AN=712;AF=0.0014045;RA=2120;AA=2;SR=996|1124;SA=2|0;SB=1;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	100184	.	A	G	68.0	PASS	NS=360;DP=2141;AC=3;AN=720;AF=0.0041667;RA=2125;AA=12;SR=1021|1104;SA=4|8;SB=0.33333;AB=0.58824;ABR=10;ABA=7;RUN=1;SNP;TS;CpG
+20	100190	.	A	T	99.0	PASS	NS=360;DP=2144;AC=20;AN=720;AF=0.027778;RA=2093;AA=43;SR=1027|1066;SA=23|20;SB=0.53488;AB=0.56044;ABR=51;ABA=40;RUN=1;SNP;TV
+20	100272	.	C	T	99.0	PASS	NS=352;DP=1860;AC=85;AN=704;AF=0.12074;RA=1684;AA=174;SR=855|829;SA=90|84;SB=0.51724;AB=0.48826;ABR=104;ABA=109;RUN=6;SNP;TS
+20	100275	.	C	G	27.0	PASS	NS=354;DP=1879;AC=1;AN=708;AF=0.0014124;RA=1870;AA=5;SR=954|916;SA=2|3;SB=0.4;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TV
+20	100277	.	A	G	0.355	PASS	NS=351;DP=1863;AC=1;AN=702;AF=0.0014245;RA=1857;AA=3;SR=938|919;SA=0|3;SB=0;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TS;CpG
+20	100279	.	T	C	99.0	PASS	NS=349;DP=1846;AC=9;AN=698;AF=0.012894;RA=1829;AA=13;SR=926|903;SA=3|10;SB=0.23077;AB=0.52381;ABR=11;ABA=10;RUN=2;SNP;TS
+20	100308	.	A	G	5.47	PASS	NS=354;DP=1794;AC=1;AN=708;AF=0.0014124;RA=1781;AA=3;SR=814|967;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	100339	.	C	A	99.0	PASS	NS=356;DP=1834;AC=18;AN=712;AF=0.025281;RA=1785;AA=45;SR=760|1025;SA=16|29;SB=0.35556;AB=0.50667;ABR=38;ABA=37;RUN=2;SNP;TV
+20	100495	.	G	A	99.0	PASS	NS=359;DP=2056;AC=85;AN=718;AF=0.11838;RA=1866;AA=181;SR=948|918;SA=93|88;SB=0.51381;AB=0.548;ABR=137;ABA=113;RUN=1;SNP;TS
+20	100505	.	T	C	99.0	PASS	NS=357;DP=2026;AC=83;AN=714;AF=0.11625;RA=1853;AA=167;SR=909|944;SA=83|84;SB=0.49701;AB=0.57025;ABR=138;ABA=104;RUN=1;SNP;TS
+20	100515	.	T	A	1.58	PASS	NS=357;DP=1978;AC=1;AN=714;AF=0.0014006;RA=1971;AA=3;SR=933|1038;SA=0|3;SB=0;AB=0.77778;ABR=7;ABA=2;RUN=4;SNP;TV
+20	100537	.	C	A	8.5	PASS	NS=360;DP=1925;AC=1;AN=720;AF=0.0013889;RA=1910;AA=6;SR=851|1059;SA=4|2;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	100554	.	T	C	5.56	PASS	NS=361;DP=1910;AC=1;AN=722;AF=0.001385;RA=1902;AA=3;SR=827|1075;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	100564	.	T	C	0.454	PASS	NS=359;DP=1868;AC=1;AN=718;AF=0.0013928;RA=1865;AA=2;SR=825|1040;SA=1|1;SB=0.5;AB=0.81818;ABR=9;ABA=2;RUN=2;SNP;TS;CpG
+20	100569	.	A	G	0.0539	PASS	NS=353;DP=1836;AC=1;AN=706;AF=0.0014164;RA=1825;AA=3;SR=832|993;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TS
+20	100592	.	T	C	6.17	PASS	NS=350;DP=1763;AC=1;AN=700;AF=0.0014286;RA=1756;AA=3;SR=892|864;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	100645	.	C	T	99.0	PASS	NS=355;DP=1769;AC=2;AN=710;AF=0.0028169;RA=1753;AA=12;SR=929|824;SA=8|4;SB=0.66667;AB=0.42857;ABR=9;ABA=12;RUN=1;SNP;TS;CpG
+20	100678	.	C	T	99.0	PASS	NS=351;DP=1593;AC=77;AN=702;AF=0.10969;RA=1411;AA=177;SR=563|848;SA=177|0;SB=1;AB=0.69182;ABR=220;ABA=97;RUN=4;SNP;TS
+20	100699	.	C	T	99.0	PASS	NS=348;DP=1572;AC=178;AN=696;AF=0.25575;RA=1157;AA=387;SR=473|684;SA=178|209;SB=0.45995;AB=0.49265;ABR=201;ABA=204;RUN=2;SNP;TS
+20	100700	.	A	C	0.0548	PASS	NS=350;DP=1624;AC=1;AN=700;AF=0.0014286;RA=1609;AA=7;SR=721|888;SA=2|5;SB=0.28571;AB=0.5;ABR=1;ABA=1;RUN=4;SNP;TV
+20	100764	.	C	T	20.8	PASS	NS=353;DP=1810;AC=1;AN=706;AF=0.0014164;RA=1805;AA=3;SR=774|1031;SA=1|2;SB=0.33333;AB=0.5;ABR=3;ABA=3;RUN=1;SNP;TS
+20	100767	.	T	G	99.0	PASS	NS=355;DP=1827;AC=8;AN=710;AF=0.011268;RA=1795;AA=25;SR=765|1030;SA=6|19;SB=0.24;AB=0.45714;ABR=16;ABA=19;RUN=1;SNP;TV
+20	100816	.	A	G	1.13	PASS	NS=346;DP=1873;AC=1;AN=692;AF=0.0014451;RA=1867;AA=2;SR=836|1031;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	100854	.	T	A	93.6	PASS	NS=346;DP=1891;AC=1;AN=692;AF=0.0014451;RA=1877;AA=10;SR=914|963;SA=4|6;SB=0.4;AB=0.33333;ABR=4;ABA=8;RUN=2;SNP;TV
+20	100862	.	C	A	6.72	PASS	NS=347;DP=1913;AC=1;AN=694;AF=0.0014409;RA=1902;AA=4;SR=956|946;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	100881	.	T	C	0.499	PASS	NS=353;DP=1949;AC=1;AN=706;AF=0.0014164;RA=1943;AA=2;SR=1035|908;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	100904	.	T	C	4.63	PASS	NS=358;DP=1912;AC=1;AN=716;AF=0.0013966;RA=1906;AA=2;SR=1075|831;SA=1|1;SB=0.5;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	101020	.	T	C	1.07	PASS	NS=357;DP=1819;AC=1;AN=714;AF=0.0014006;RA=1807;AA=4;SR=962|845;SA=3|1;SB=0.75;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	101235	.	T	G	39.9	PASS	NS=365;DP=2094;AC=3;AN=730;AF=0.0041096;RA=2082;AA=8;SR=1042|1040;SA=4|4;SB=0.5;AB=0.41667;ABR=5;ABA=7;RUN=2;SNP;TV
+20	101355	.	T	C	99.0	PASS	NS=362;DP=2122;AC=25;AN=724;AF=0.03453;RA=2066;AA=51;SR=947|1119;SA=17|34;SB=0.33333;AB=0.58036;ABR=65;ABA=47;RUN=1;SNP;TS
+20	101362	.	G	A	99.0	PASS	NS=362;DP=2073;AC=86;AN=724;AF=0.11878;RA=1825;AA=242;SR=817|1008;SA=107|135;SB=0.44215;AB=0.54505;ABR=242;ABA=202;RUN=3;SNP;TS
+20	101437	.	C	T	99.0	PASS	NS=364;DP=1982;AC=21;AN=728;AF=0.028846;RA=1917;AA=58;SR=1001|916;SA=24|34;SB=0.41379;AB=0.46667;ABR=42;ABA=48;RUN=1;SNP;TS
+20	101449	.	A	G	99.0	PASS	NS=362;DP=1984;AC=1;AN=724;AF=0.0013812;RA=1971;AA=10;SR=1065|906;SA=5|5;SB=0.5;AB=0;ABR=0;ABA=10;RUN=1;SNP;TS
+20	101513	.	T	C	99.0	PASS	NS=364;DP=2010;AC=3;AN=728;AF=0.0041209;RA=1985;AA=11;SR=952|1033;SA=4|7;SB=0.36364;AB=0.47059;ABR=8;ABA=9;RUN=1;SNP;TS
+20	101515	.	G	A	25.8	PASS	NS=364;DP=1991;AC=1;AN=728;AF=0.0013736;RA=1979;AA=5;SR=946|1033;SA=3|2;SB=0.6;AB=0.5;ABR=4;ABA=4;RUN=2;SNP;TS
+20	101521	.	A	T	3.47	PASS	NS=365;DP=1956;AC=1;AN=730;AF=0.0013699;RA=1949;AA=3;SR=905|1044;SA=2|1;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	101567	.	A	G	31.0	PASS	NS=359;DP=1818;AC=1;AN=718;AF=0.0013928;RA=1808;AA=5;SR=875|933;SA=1|4;SB=0.2;AB=0.375;ABR=3;ABA=5;RUN=1;SNP;TS
+20	101590	.	C	A	0.0543	PASS	NS=355;DP=1773;AC=1;AN=710;AF=0.0014085;RA=1756;AA=9;SR=848|908;SA=1|8;SB=0.11111;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	101905	.	G	C	99.0	PASS	NS=370;DP=2159;AC=13;AN=740;AF=0.017568;RA=2107;AA=46;SR=1075|1032;SA=30|16;SB=0.65217;AB=0.46988;ABR=39;ABA=44;RUN=1;SNP;TV
+20	101918	.	C	T	99.0	PASS	NS=368;DP=2159;AC=29;AN=736;AF=0.039402;RA=2069;AA=83;SR=1068|1001;SA=46|37;SB=0.55422;AB=0.59296;ABR=118;ABA=80;RUN=3;SNP;TS
+20	102181	.	T	C	99.0	PASS	NS=370;DP=2299;AC=310;AN=740;AF=0.41892;RA=1354;AA=940;SR=740|614;SA=508|432;SB=0.54043;AB=0.51446;ABR=427;ABA=401;RUN=2;SNP;TS
+20	102203	.	T	C	99.0	PASS	NS=369;DP=2327;AC=7;AN=738;AF=0.0094851;RA=2305;AA=15;SR=1223|1082;SA=11|4;SB=0.73333;AB=0.72727;ABR=24;ABA=9;RUN=2;SNP;TS
+20	102205	.	A	G	7.9	PASS	NS=368;DP=2331;AC=2;AN=736;AF=0.0027174;RA=2314;AA=5;SR=1222|1092;SA=2|3;SB=0.4;AB=0.57143;ABR=4;ABA=3;RUN=1;SNP;TS
+20	102278	.	C	A	0.0803	PASS	NS=370;DP=2369;AC=1;AN=740;AF=0.0013514;RA=2353;AA=11;SR=1241|1112;SA=4|7;SB=0.36364;AB=0.76923;ABR=10;ABA=3;RUN=2;SNP;TV
+20	102312	.	A	G	39.1	PASS	NS=369;DP=2482;AC=1;AN=738;AF=0.001355;RA=2466;AA=6;SR=1292|1174;SA=3|3;SB=0.5;AB=0.63636;ABR=7;ABA=4;RUN=2;SNP;TS
+20	102387	.	C	A	0.0651	PASS	NS=372;DP=2764;AC=1;AN=744;AF=0.0013441;RA=2750;AA=8;SR=1316|1434;SA=3|5;SB=0.375;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	102441	.	T	C	99.0	PASS	NS=370;DP=2720;AC=18;AN=740;AF=0.024324;RA=2616;AA=92;SR=1328|1288;SA=36|56;SB=0.3913;AB=0.51075;ABR=95;ABA=91;RUN=1;SNP;TS
+20	102464	.	G	C	99.0	PASS	NS=368;DP=2753;AC=4;AN=736;AF=0.0054348;RA=2720;AA=13;SR=1339|1381;SA=9|4;SB=0.69231;AB=0.56667;ABR=17;ABA=13;RUN=1;SNP;TV
+20	102485	.	A	G	0.539	PASS	NS=372;DP=2911;AC=1;AN=744;AF=0.0013441;RA=2902;AA=4;SR=1393|1509;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	102510	.	C	T	0.0965	PASS	NS=368;DP=2818;AC=1;AN=736;AF=0.0013587;RA=2807;AA=3;SR=1294|1513;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS;CpG
+20	102511	.	G	A	0.0598	PASS	NS=369;DP=2815;AC=1;AN=738;AF=0.001355;RA=2803;AA=6;SR=1297|1506;SA=5|1;SB=0.83333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	102519	.	G	A	9.8	PASS	NS=369;DP=2741;AC=1;AN=738;AF=0.001355;RA=2734;AA=4;SR=1271|1463;SA=1|3;SB=0.25;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	102524	.	A	G	99.0	PASS	NS=370;DP=2710;AC=31;AN=740;AF=0.041892;RA=2605;AA=99;SR=1195|1410;SA=45|54;SB=0.45455;AB=0.54082;ABR=106;ABA=90;RUN=1;SNP;TS
+20	102631	.	G	A	2.6	PASS	NS=367;DP=2311;AC=1;AN=734;AF=0.0013624;RA=2298;AA=4;SR=1160|1138;SA=1|3;SB=0.25;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	102760	.	A	G	0.319	PASS	NS=371;DP=2530;AC=1;AN=742;AF=0.0013477;RA=2521;AA=5;SR=1100|1421;SA=1|4;SB=0.2;AB=0.83333;ABR=10;ABA=2;RUN=2;SNP;TS
+20	102799	.	G	A	99.0	PASS	NS=367;DP=2411;AC=188;AN=734;AF=0.25613;RA=1818;AA=585;SR=812|1006;SA=250|335;SB=0.42735;AB=0.49346;ABR=377;ABA=383;RUN=1;SNP;TS
+20	103002	.	G	A	59.3	PASS	NS=365;DP=2072;AC=1;AN=730;AF=0.0013699;RA=2051;AA=6;SR=1068|983;SA=3|3;SB=0.5;AB=0.33333;ABR=2;ABA=4;RUN=1;SNP;TS
+20	103003	.	C	G	0.107	PASS	NS=365;DP=2089;AC=1;AN=730;AF=0.0013699;RA=2079;AA=2;SR=1075|1004;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	103119	.	T	C	5.14	PASS	NS=362;DP=2079;AC=1;AN=724;AF=0.0013812;RA=2070;AA=2;SR=950|1120;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	103308	.	A	T	99.0	PASS	NS=367;DP=1956;AC=21;AN=734;AF=0.02861;RA=1908;AA=46;SR=920|988;SA=23|23;SB=0.5;AB=0.56061;ABR=37;ABA=29;RUN=1;SNP;TV
+20	103351	.	C	A	99.0	PASS	NS=362;DP=2013;AC=23;AN=724;AF=0.031768;RA=1954;AA=58;SR=1062|892;SA=37|21;SB=0.63793;AB=0.49438;ABR=44;ABA=45;RUN=4;SNP;TV
+20	103487	.	A	G	99.0	PASS	NS=367;DP=2018;AC=26;AN=734;AF=0.035422;RA=1949;AA=62;SR=873|1076;SA=26|36;SB=0.41935;AB=0.52577;ABR=51;ABA=46;RUN=1;SNP;TS
+20	103517	.	A	T	99.0	PASS	NS=362;DP=1991;AC=307;AN=724;AF=0.42403;RA=1246;AA=741;SR=604|642;SA=340|401;SB=0.45884;AB=0.49821;ABR=278;ABA=279;RUN=1;SNP;TV
+20	103565	.	A	G	31.2	PASS	NS=360;DP=2009;AC=1;AN=720;AF=0.0013889;RA=2002;AA=5;SR=1066|936;SA=3|2;SB=0.6;AB=0;ABR=0;ABA=4;RUN=1;SNP;TS
+20	103642	.	C	G	99.0	PASS	NS=361;DP=1999;AC=90;AN=722;AF=0.12465;RA=1791;AA=200;SR=906|885;SA=106|94;SB=0.53;AB=0.50545;ABR=139;ABA=134;RUN=1;SNP;TV
+20	103645	.	T	C	3.37	PASS	NS=362;DP=1984;AC=1;AN=724;AF=0.0013812;RA=1980;AA=3;SR=1009|971;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	103659	.	T	G	0.587	PASS	NS=355;DP=1968;AC=1;AN=710;AF=0.0014085;RA=1961;AA=6;SR=994|967;SA=2|4;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	103694	.	C	T	9.34	PASS	NS=360;DP=2012;AC=1;AN=720;AF=0.0013889;RA=2005;AA=2;SR=1039|966;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	103722	.	T	C	3.92	PASS	NS=365;DP=2168;AC=1;AN=730;AF=0.0013699;RA=2161;AA=4;SR=1157|1004;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	103762	.	G	A	5.05	PASS	NS=367;DP=2133;AC=1;AN=734;AF=0.0013624;RA=2122;AA=2;SR=1144|978;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	103813	.	G	A	99.0	PASS	NS=362;DP=1974;AC=23;AN=724;AF=0.031768;RA=1909;AA=59;SR=1009|900;SA=35|24;SB=0.59322;AB=0.58779;ABR=77;ABA=54;RUN=1;SNP;TS
+20	103826	.	T	C	1.89	PASS	NS=360;DP=1939;AC=1;AN=720;AF=0.0013889;RA=1930;AA=2;SR=993|937;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	104114	.	G	C	99.0	PASS	NS=361;DP=2017;AC=4;AN=722;AF=0.0055402;RA=2002;AA=12;SR=921|1081;SA=3|9;SB=0.25;AB=0.5;ABR=11;ABA=11;RUN=1;SNP;TV
+20	104292	.	A	G	0.304	PASS	NS=360;DP=2180;AC=1;AN=720;AF=0.0013889;RA=2177;AA=2;SR=1102|1075;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS;CpG
+20	104330	.	A	T	0.0694	PASS	NS=366;DP=2128;AC=1;AN=732;AF=0.0013661;RA=2121;AA=3;SR=1033|1088;SA=1|2;SB=0.33333;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	104367	.	T	G	0.273	PASS	NS=366;DP=2220;AC=1;AN=732;AF=0.0013661;RA=2206;AA=8;SR=1142|1064;SA=5|3;SB=0.625;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	104402	.	T	G	0.435	PASS	NS=362;DP=2078;AC=1;AN=724;AF=0.0013812;RA=2064;AA=10;SR=1163|901;SA=1|9;SB=0.1;AB=0.6;ABR=3;ABA=2;RUN=3;SNP;TV
+20	104520	.	A	G	99.0	PASS	NS=366;DP=2249;AC=90;AN=732;AF=0.12295;RA=1999;AA=247;SR=942|1057;SA=126|121;SB=0.51012;AB=0.52493;ABR=200;ABA=181;RUN=2;SNP;TS
+20	104532	.	C	T	9.69	PASS	NS=370;DP=2249;AC=1;AN=740;AF=0.0013514;RA=2239;AA=3;SR=1069|1170;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	104534	.	T	C	99.0	PASS	NS=371;DP=2257;AC=27;AN=742;AF=0.036388;RA=2156;AA=93;SR=1027|1129;SA=49|44;SB=0.52688;AB=0.51852;ABR=84;ABA=78;RUN=1;SNP;TS
+20	104604	.	T	C	99.0	PASS	NS=364;DP=2148;AC=30;AN=728;AF=0.041209;RA=2078;AA=61;SR=1065|1013;SA=29|32;SB=0.47541;AB=0.52632;ABR=50;ABA=42;RUN=1;SNP;TS;CpG
+20	104610	.	C	A	0.102	PASS	NS=365;DP=2131;AC=1;AN=730;AF=0.0013699;RA=2113;AA=14;SR=1080|1033;SA=4|10;SB=0.28571;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	104716	.	C	A	0.52	PASS	NS=368;DP=2299;AC=1;AN=736;AF=0.0013587;RA=2289;AA=7;SR=1070|1219;SA=2|5;SB=0.28571;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TV
+20	104808	.	G	T	13.4	PASS	NS=361;DP=2053;AC=1;AN=722;AF=0.001385;RA=2046;AA=3;SR=998|1048;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	104899	.	C	T	99.0	PASS	NS=358;DP=1718;AC=155;AN=716;AF=0.21648;RA=1331;AA=378;SR=675|656;SA=191|187;SB=0.50529;AB=0.49703;ABR=251;ABA=251;RUN=2;SNP;TS
+20	104902	.	T	A	0.0554	PASS	NS=358;DP=1715;AC=1;AN=716;AF=0.0013966;RA=1704;AA=4;SR=864|840;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	104959	.	G	C	4.15	PASS	NS=355;DP=1738;AC=1;AN=710;AF=0.0014085;RA=1728;AA=3;SR=833|895;SA=1|2;SB=0.33333;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TV
+20	105111	.	T	A	0.299	PASS	NS=353;DP=2057;AC=1;AN=706;AF=0.0014164;RA=2048;AA=2;SR=1090|958;SA=1|1;SB=0.5;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TV
+20	105131	.	T	C	0.314	PASS	NS=354;DP=1957;AC=1;AN=708;AF=0.0014124;RA=1953;AA=2;SR=1047|906;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	105239	.	A	C	7.74	PASS	NS=353;DP=1694;AC=1;AN=706;AF=0.0014164;RA=1682;AA=6;SR=893|789;SA=3|3;SB=0.5;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TV
+20	105359	.	G	T	85.9	PASS	NS=343;DP=1740;AC=3;AN=686;AF=0.0043732;RA=1730;AA=7;SR=780|950;SA=5|2;SB=0.71429;AB=0.5;ABR=7;ABA=7;RUN=1;SNP;TV
+20	105407	.	T	C	6.06	PASS	NS=347;DP=1867;AC=1;AN=694;AF=0.0014409;RA=1860;AA=2;SR=843|1017;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	105450	.	A	G	1.12	PASS	NS=353;DP=1846;AC=1;AN=706;AF=0.0014164;RA=1842;AA=2;SR=803|1039;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	105477	.	A	G	0.259	PASS	NS=350;DP=1929;AC=1;AN=700;AF=0.0014286;RA=1925;AA=2;SR=871|1054;SA=1|1;SB=0.5;AB=0.84615;ABR=11;ABA=2;RUN=1;SNP;TS
+20	105540	.	A	G	2.1	PASS	NS=348;DP=1862;AC=1;AN=696;AF=0.0014368;RA=1855;AA=4;SR=957|898;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	105930	.	G	T	11.5	PASS	NS=362;DP=2051;AC=1;AN=724;AF=0.0013812;RA=2038;AA=2;SR=1081|957;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	106063	.	T	C	0.044	PASS	NS=362;DP=2061;AC=1;AN=724;AF=0.0013812;RA=2041;AA=5;SR=905|1136;SA=3|2;SB=0.6;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	106098	.	A	G	99.0	PASS	NS=362;DP=1933;AC=14;AN=724;AF=0.019337;RA=1875;AA=55;SR=915|960;SA=20|35;SB=0.36364;AB=0.43023;ABR=37;ABA=49;RUN=1;SNP;TS
+20	106169	.	A	C	5.1	PASS	NS=363;DP=1990;AC=1;AN=726;AF=0.0013774;RA=1985;AA=4;SR=1081|904;SA=4|0;SB=1;AB=0;ABR=0;ABA=2;RUN=1;SNP;TV
+20	106204	.	A	G	14.8	PASS	NS=367;DP=1984;AC=2;AN=734;AF=0.0027248;RA=1967;AA=6;SR=965|1002;SA=1|5;SB=0.16667;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TS
+20	106371	.	C	A	27.8	PASS	NS=357;DP=1931;AC=1;AN=714;AF=0.0014006;RA=1919;AA=9;SR=1070|849;SA=4|5;SB=0.44444;AB=0.33333;ABR=2;ABA=4;RUN=5;SNP;TV
+20	106411	.	C	A	99.0	PASS	NS=353;DP=1798;AC=6;AN=706;AF=0.0084986;RA=1782;AA=15;SR=908|874;SA=8|7;SB=0.53333;AB=0.5;ABR=13;ABA=13;RUN=3;SNP;TV
+20	106550	.	T	C	0.176	PASS	NS=348;DP=1664;AC=1;AN=696;AF=0.0014368;RA=1657;AA=3;SR=738|919;SA=2|1;SB=0.66667;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS;CpG
+20	106604	.	T	C	0.162	PASS	NS=359;DP=1894;AC=1;AN=718;AF=0.0013928;RA=1887;AA=3;SR=817|1070;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS;CpG
+20	106609	.	A	G	22.0	PASS	NS=360;DP=1886;AC=1;AN=720;AF=0.0013889;RA=1872;AA=5;SR=801|1071;SA=3|2;SB=0.6;AB=0;ABR=0;ABA=3;RUN=1;SNP;TS
+20	106613	.	A	G	99.0	PASS	NS=363;DP=1933;AC=17;AN=726;AF=0.023416;RA=1878;AA=52;SR=795|1083;SA=23|29;SB=0.44231;AB=0.45833;ABR=44;ABA=52;RUN=1;SNP;TS
+20	106635	.	G	A	99.0	PASS	NS=364;DP=1892;AC=261;AN=728;AF=0.35852;RA=1263;AA=626;SR=506|757;SA=246|380;SB=0.39297;AB=0.48309;ABR=300;ABA=321;RUN=1;SNP;TS;CpG
+20	107011	.	A	G	33.8	PASS	NS=303;DP=833;AC=1;AN=606;AF=0.0016502;RA=827;AA=4;SR=348|479;SA=2|2;SB=0.5;AB=0.5;ABR=3;ABA=3;RUN=1;SNP;TS
+20	107071	.	G	A	0.0548	PASS	NS=297;DP=963;AC=1;AN=594;AF=0.0016835;RA=954;AA=4;SR=622|332;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	107118	.	C	T	0.0477	PASS	NS=310;DP=1008;AC=3;AN=620;AF=0.0048387;RA=1002;AA=3;SR=698|304;SA=2|1;SB=0.66667;AB=0;ABR=0;ABA=1;RUN=1;SNP;TS
+20	107120	.	T	G	11.1	PASS	NS=306;DP=986;AC=1;AN=612;AF=0.001634;RA=974;AA=7;SR=677|297;SA=2|5;SB=0.28571;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	107152	.	A	G	38.9	PASS	NS=307;DP=943;AC=5;AN=614;AF=0.0081433;RA=930;AA=9;SR=548|382;SA=6|3;SB=0.66667;AB=0.75;ABR=3;ABA=1;RUN=3;SNP;TS;CpG
+20	107160	.	C	G	99.0	PASS	NS=312;DP=969;AC=4;AN=624;AF=0.0064103;RA=951;AA=12;SR=546|405;SA=5|7;SB=0.41667;AB=0.4;ABR=6;ABA=9;RUN=2;SNP;TV
+20	107201	.	G	A	99.0	PASS	NS=317;DP=936;AC=24;AN=634;AF=0.037855;RA=883;AA=51;SR=486|397;SA=36|15;SB=0.70588;AB=0.40278;ABR=29;ABA=43;RUN=1;SNP;TS;CpG
+20	107273	.	C	A	0.855	PASS	NS=298;DP=985;AC=1;AN=596;AF=0.0016779;RA=978;AA=3;SR=689|289;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TV
+20	107457	.	T	C	99.0	PASS	NS=350;DP=1623;AC=91;AN=700;AF=0.13;RA=1430;AA=185;SR=730|700;SA=101|84;SB=0.54595;AB=0.52964;ABR=134;ABA=117;RUN=1;SNP;TS
+20	107563	.	T	G	1.01	PASS	NS=353;DP=1642;AC=1;AN=706;AF=0.0014164;RA=1604;AA=29;SR=596|1008;SA=25|4;SB=0.86207;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TV
+20	107613	.	T	G	99.0	PASS	NS=350;DP=1383;AC=68;AN=700;AF=0.097143;RA=1287;AA=95;SR=532|755;SA=36|59;SB=0.37895;AB=0.58621;ABR=68;ABA=48;RUN=1;SNP;TV
+20	107682	.	T	C	1.66	PASS	NS=328;DP=1188;AC=1;AN=656;AF=0.0015244;RA=1174;AA=7;SR=513|661;SA=6|1;SB=0.85714;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TS
+20	107739	.	C	T	19.1	PASS	NS=309;DP=939;AC=1;AN=618;AF=0.0016181;RA=931;AA=4;SR=333|598;SA=2|2;SB=0.5;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TS;CpG
+20	107955	.	C	T	0.385	PASS	NS=353;DP=1950;AC=2;AN=706;AF=0.0028329;RA=1935;AA=7;SR=1127|808;SA=4|3;SB=0.57143;AB=0.76923;ABR=10;ABA=3;RUN=2;SNP;TS
+20	107972	.	T	C	8.26	PASS	NS=356;DP=1989;AC=1;AN=712;AF=0.0014045;RA=1981;AA=3;SR=1113|868;SA=2|1;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	107980	.	T	C	3.5	PASS	NS=353;DP=2021;AC=1;AN=706;AF=0.0014164;RA=2005;AA=6;SR=1111|894;SA=3|3;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	107995	.	A	G	0.878	PASS	NS=353;DP=2018;AC=1;AN=706;AF=0.0014164;RA=2007;AA=2;SR=1100|907;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	108012	.	A	C	0.159	PASS	NS=352;DP=1969;AC=1;AN=704;AF=0.0014205;RA=1957;AA=8;SR=1101|856;SA=6|2;SB=0.75;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	108015	.	T	C	6.58	PASS	NS=353;DP=1948;AC=1;AN=706;AF=0.0014164;RA=1941;AA=3;SR=1097|844;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	108017	.	C	T	0.235	PASS	NS=355;DP=1935;AC=1;AN=710;AF=0.0014085;RA=1924;AA=4;SR=1088|836;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=5;SNP;TS
+20	108135	.	G	A	0.105	PASS	NS=359;DP=1667;AC=1;AN=718;AF=0.0013928;RA=1654;AA=4;SR=1019|635;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	108187	.	A	G	99.0	PASS	NS=357;DP=1712;AC=83;AN=714;AF=0.11625;RA=1508;AA=195;SR=874|634;SA=103|92;SB=0.52821;AB=0.54895;ABR=157;ABA=128;RUN=1;SNP;TS
+20	108192	.	G	A	99.0	PASS	NS=359;DP=1741;AC=3;AN=718;AF=0.0041783;RA=1721;AA=14;SR=975|746;SA=7|7;SB=0.5;AB=0.33333;ABR=6;ABA=12;RUN=4;SNP;TS
+20	108286	.	T	G	99.0	PASS	NS=360;DP=1849;AC=159;AN=720;AF=0.22083;RA=1402;AA=404;SR=743|659;SA=205|199;SB=0.50743;AB=0.46593;ABR=253;ABA=274;RUN=1;SNP;TV
+20	108328	.	A	C	99.0	PASS	NS=362;DP=2007;AC=628;AN=724;AF=0.8674;RA=315;AA=1690;SR=139|176;SA=829|861;SB=0.49053;AB=0.52174;ABR=204;ABA=187;RUN=1;SNP;TV
+20	108333	.	G	A	3.94	PASS	NS=360;DP=2056;AC=1;AN=720;AF=0.0013889;RA=2044;AA=5;SR=980|1064;SA=3|2;SB=0.6;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	108642	.	T	C	0.532	PASS	NS=216;DP=749;AC=1;AN=432;AF=0.0023148;RA=741;AA=3;SR=201|540;SA=0|3;SB=0;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS;CpG
+20	108711	.	A	C	99.0	PASS	NS=227;DP=741;AC=10;AN=454;AF=0.022026;RA=723;AA=15;SR=265|458;SA=7|8;SB=0.46667;AB=0.51724;ABR=15;ABA=14;RUN=1;SNP;TV
+20	108793	.	C	G	68.9	PASS	NS=193;DP=364;AC=8;AN=386;AF=0.020725;RA=352;AA=10;SR=228|124;SA=6|4;SB=0.6;AB=0.57895;ABR=11;ABA=8;RUN=1;SNP;TV
+20	108889	.	G	C	99.0	PASS	NS=353;DP=1305;AC=22;AN=706;AF=0.031161;RA=1259;AA=38;SR=644|615;SA=22|16;SB=0.57895;AB=0.5;ABR=21;ABA=21;RUN=2;SNP;TV
+20	108949	.	T	G	99.0	PASS	NS=329;DP=1082;AC=61;AN=658;AF=0.092705;RA=988;AA=92;SR=653|335;SA=70|22;SB=0.76087;AB=0.53;ABR=53;ABA=47;RUN=1;SNP;TV
+20	108958	.	A	C	99.0	PASS	NS=324;DP=1013;AC=125;AN=648;AF=0.1929;RA=809;AA=201;SR=551|258;SA=141|60;SB=0.70149;AB=0.5503;ABR=93;ABA=75;RUN=2;SNP;TV
+20	109043	.	G	T	13.5	PASS	NS=342;DP=1318;AC=1;AN=684;AF=0.001462;RA=1299;AA=4;SR=862|437;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	109213	.	A	C	37.3	PASS	NS=366;DP=1810;AC=1;AN=732;AF=0.0013661;RA=1803;AA=4;SR=998|805;SA=3|1;SB=0.75;AB=0.2;ABR=1;ABA=4;RUN=1;SNP;TV
+20	109258	.	T	C	3.83	PASS	NS=370;DP=2046;AC=1;AN=740;AF=0.0013514;RA=2039;AA=3;SR=1134|905;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	109272	.	C	G	99.0	PASS	NS=367;DP=2020;AC=90;AN=734;AF=0.12262;RA=1774;AA=241;SR=983|791;SA=127|114;SB=0.52697;AB=0.50142;ABR=177;ABA=175;RUN=2;SNP;TV
+20	109273	.	T	A	7.99	PASS	NS=367;DP=2018;AC=1;AN=734;AF=0.0013624;RA=2012;AA=2;SR=1110|902;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	109288	.	G	C	99.0	PASS	NS=364;DP=1921;AC=90;AN=728;AF=0.12363;RA=1686;AA=221;SR=898|788;SA=120|101;SB=0.54299;AB=0.51133;ABR=158;ABA=148;RUN=1;SNP;TV
+20	109358	.	T	C	0.707	PASS	NS=358;DP=2101;AC=1;AN=716;AF=0.0013966;RA=2093;AA=5;SR=1099|994;SA=4|1;SB=0.8;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	109377	.	A	C	99.0	PASS	NS=361;DP=2239;AC=21;AN=722;AF=0.029086;RA=2161;AA=75;SR=1073|1088;SA=46|29;SB=0.61333;AB=0.49635;ABR=68;ABA=68;RUN=2;SNP;TV
+20	109385	.	A	G	1.51	PASS	NS=363;DP=2269;AC=1;AN=726;AF=0.0013774;RA=2254;AA=8;SR=1091|1163;SA=5|3;SB=0.625;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS;CpG
+20	109422	.	T	A	99.0	PASS	NS=366;DP=2242;AC=24;AN=732;AF=0.032787;RA=2159;AA=76;SR=1039|1120;SA=30|46;SB=0.39474;AB=0.48387;ABR=60;ABA=64;RUN=1;SNP;TV
+20	109440	.	T	C	0.386	PASS	NS=362;DP=2222;AC=1;AN=724;AF=0.0013812;RA=2218;AA=3;SR=1057|1161;SA=1|2;SB=0.33333;AB=0.77778;ABR=7;ABA=2;RUN=3;SNP;TS
+20	109575	.	A	G	0.588	PASS	NS=364;DP=2020;AC=1;AN=728;AF=0.0013736;RA=2008;AA=4;SR=931|1077;SA=3|1;SB=0.75;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	109582	.	T	G	23.2	PASS	NS=362;DP=1967;AC=3;AN=724;AF=0.0041436;RA=1957;AA=6;SR=907|1050;SA=3|3;SB=0.5;AB=0.58333;ABR=7;ABA=5;RUN=1;SNP;TV
+20	109707	.	G	A	0.971	PASS	NS=323;DP=1467;AC=1;AN=646;AF=0.001548;RA=1455;AA=3;SR=669|786;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	109725	.	T	C	0.908	PASS	NS=336;DP=1492;AC=1;AN=672;AF=0.0014881;RA=1479;AA=7;SR=670|809;SA=6|1;SB=0.85714;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	109736	.	T	C	0.074	PASS	NS=342;DP=1489;AC=1;AN=684;AF=0.001462;RA=1478;AA=5;SR=680|798;SA=4|1;SB=0.8;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	109783	.	T	C	99.0	PASS	NS=342;DP=1544;AC=26;AN=684;AF=0.038012;RA=1472;AA=66;SR=641|831;SA=28|38;SB=0.42424;AB=0.46364;ABR=51;ABA=57;RUN=2;SNP;TS
+20	109889	.	T	C	0.545	PASS	NS=365;DP=2083;AC=1;AN=730;AF=0.0013699;RA=2077;AA=4;SR=1096|981;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	109901	.	A	G	99.0	PASS	NS=364;DP=2112;AC=28;AN=728;AF=0.038462;RA=2028;AA=78;SR=1064|964;SA=39|39;SB=0.5;AB=0.46479;ABR=66;ABA=74;RUN=1;SNP;TS
+20	109933	.	G	A	0.166	PASS	NS=357;DP=1915;AC=1;AN=714;AF=0.0014006;RA=1908;AA=3;SR=1017|891;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TS
+20	109947	.	T	A	4.68	PASS	NS=352;DP=1833;AC=2;AN=704;AF=0.0028409;RA=1822;AA=4;SR=950|872;SA=1|3;SB=0.25;AB=0.5;ABR=3;ABA=3;RUN=2;SNP;TV
+20	109997	.	C	T	0.0475	PASS	NS=346;DP=1655;AC=1;AN=692;AF=0.0014451;RA=1639;AA=11;SR=790|849;SA=10|1;SB=0.90909;AB=0.5;ABR=3;ABA=3;RUN=8;SNP;TS
+20	110058	.	G	C	99.0	PASS	NS=338;DP=1651;AC=146;AN=676;AF=0.21598;RA=1306;AA=340;SR=717|589;SA=189|151;SB=0.55588;AB=0.4978;ABR=226;ABA=226;RUN=1;SNP;TV
+20	110082	.	A	G	99.0	PASS	NS=337;DP=1696;AC=5;AN=674;AF=0.0074184;RA=1677;AA=14;SR=1008|669;SA=5|9;SB=0.35714;AB=0.47826;ABR=11;ABA=12;RUN=1;SNP;TS
+20	110098	.	A	G	99.0	PASS	NS=347;DP=1831;AC=242;AN=694;AF=0.3487;RA=1250;AA=577;SR=767|483;SA=353|224;SB=0.61179;AB=0.51826;ABR=298;ABA=277;RUN=3;SNP;TS
+20	110124	.	T	C	0.105	PASS	NS=365;DP=2096;AC=1;AN=730;AF=0.0013699;RA=2091;AA=3;SR=1273|818;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS;CpG
+20	110234	.	G	A	0.759	PASS	NS=350;DP=1744;AC=1;AN=700;AF=0.0014286;RA=1727;AA=4;SR=739|988;SA=3|1;SB=0.75;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	110315	.	T	C	0.0966	PASS	NS=337;DP=1589;AC=1;AN=674;AF=0.0014837;RA=1583;AA=3;SR=729|854;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	110366	.	C	A	99.0	PASS	NS=340;DP=1634;AC=7;AN=680;AF=0.010294;RA=1602;AA=28;SR=724|878;SA=18|10;SB=0.64286;AB=0.39474;ABR=15;ABA=23;RUN=3;SNP;TV
+20	110404	.	G	A	26.7	PASS	NS=351;DP=1839;AC=1;AN=702;AF=0.0014245;RA=1826;AA=5;SR=727|1099;SA=4|1;SB=0.8;AB=0.625;ABR=5;ABA=3;RUN=1;SNP;TS
+20	110417	.	G	A	7.25	PASS	NS=363;DP=1934;AC=1;AN=726;AF=0.0013774;RA=1923;AA=4;SR=782|1141;SA=0|4;SB=0;AB=0;ABR=0;ABA=2;RUN=1;SNP;TS
+20	110427	.	A	G	0.108	PASS	NS=364;DP=2009;AC=1;AN=728;AF=0.0013736;RA=2000;AA=3;SR=826|1174;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	110442	.	C	A	9.88	PASS	NS=367;DP=2074;AC=1;AN=734;AF=0.0013624;RA=2060;AA=5;SR=845|1215;SA=3|2;SB=0.6;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	110520	.	A	G	8.32	PASS	NS=351;DP=1771;AC=1;AN=702;AF=0.0014245;RA=1759;AA=3;SR=809|950;SA=2|1;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	110536	.	T	C	55.6	PASS	NS=359;DP=1709;AC=1;AN=718;AF=0.0013928;RA=1697;AA=6;SR=784|913;SA=4|2;SB=0.66667;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TS;CpG
+20	110564	.	T	C	1.51	PASS	NS=360;DP=1650;AC=1;AN=720;AF=0.0013889;RA=1637;AA=5;SR=750|887;SA=3|2;SB=0.6;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TS
+20	110702	.	C	T	99.0	PASS	NS=244;DP=491;AC=104;AN=488;AF=0.21311;RA=368;AA=102;SR=39|329;SA=6|96;SB=0.058824;AB=0.50617;ABR=41;ABA=38;RUN=1;SNP;TS;CpG
+20	110773	.	G	A	0.095	PASS	NS=223;DP=443;AC=18;AN=446;AF=0.040359;RA=425;AA=14;SR=61|364;SA=3|11;SB=0.21429;AB=0.57895;ABR=11;ABA=7;RUN=2;SNP;TS;CpG
+20	110875	.	C	T	99.0	PASS	NS=165;DP=461;AC=14;AN=330;AF=0.042424;RA=439;AA=21;SR=7|432;SA=0|21;SB=0;AB=0.52941;ABR=18;ABA=16;RUN=2;SNP;TS;CpG
+20	110970	.	G	A	99.0	PASS	NS=88;DP=160;AC=37;AN=176;AF=0.21023;RA=125;AA=32;SR=6|119;SA=0|32;SB=0;AB=0.54545;ABR=12;ABA=9;RUN=1;SNP;TS;CpG
+20	110976	.	G	A	67.8	PASS	NS=80;DP=137;AC=6;AN=160;AF=0.0375;RA=127;AA=8;SR=4|123;SA=0|8;SB=0;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS;CpG
+20	110979	.	A	G	99.0	PASS	NS=41;DP=61;AC=39;AN=82;AF=0.47561;RA=29;AA=30;SR=4|25;SA=0|30;SB=0;AB=0.375;ABR=3;ABA=4;RUN=1;SNP;TS
+20	111531	.	G	A	0.0614	PASS	NS=6;DP=8;AC=4;AN=12;AF=0.33333;RA=3;AA=4;SR=0|3;SA=0|4;SB=0;AB=0;ABR=0;ABA=0;RUN=7;SNP;TS
+20	116405	.	G	A	49.6	PASS	NS=55;DP=69;AC=26;AN=110;AF=0.23636;RA=52;AA=16;SR=49|3;SA=16|0;SB=1;AB=0;ABR=0;ABA=0;RUN=2;SNP;TS
+20	116545	.	G	A	95.2	PASS	NS=65;DP=84;AC=19;AN=130;AF=0.14615;RA=70;AA=13;SR=67|3;SA=13|0;SB=1;AB=0.5;ABR=3;ABA=3;RUN=1;SNP;TS;CpG
+20	116652	.	A	T	0.615	PASS	NS=305;DP=848;AC=1;AN=610;AF=0.0016393;RA=842;AA=3;SR=602|240;SA=3|0;SB=1;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	116787	.	A	G	99.0	PASS	NS=293;DP=885;AC=195;AN=586;AF=0.33276;RA=619;AA=263;SR=450|169;SA=196|67;SB=0.74525;AB=0.52709;ABR=107;ABA=95;RUN=2;SNP;TS;CpG
+20	116986	.	G	T	0.068	PASS	NS=200;DP=396;AC=1;AN=400;AF=0.0025;RA=385;AA=4;SR=239|146;SA=0|4;SB=0;AB=0.5;ABR=1;ABA=1;RUN=1;SNP;TV
+20	117254	.	T	C	99.0	PASS	NS=360;DP=1886;AC=3;AN=720;AF=0.0041667;RA=1869;AA=10;SR=1183|686;SA=6|4;SB=0.6;AB=0.6087;ABR=14;ABA=9;RUN=1;SNP;TS
+20	117290	.	T	G	99.0	PASS	NS=358;DP=1981;AC=49;AN=716;AF=0.068436;RA=1888;AA=79;SR=1178|710;SA=41|38;SB=0.51899;AB=0.7807;ABR=267;ABA=74;RUN=2;SNP;TV
+20	117305	.	T	C	3.02	PASS	NS=359;DP=2077;AC=1;AN=718;AF=0.0013928;RA=2064;AA=3;SR=1224|840;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	117312	.	G	A	0.499	PASS	NS=364;DP=2121;AC=3;AN=728;AF=0.0041209;RA=2108;AA=8;SR=1235|873;SA=5|3;SB=0.625;AB=0.7619;ABR=16;ABA=5;RUN=2;SNP;TS
+20	117329	.	T	C	6.59	PASS	NS=361;DP=2185;AC=1;AN=722;AF=0.001385;RA=2178;AA=2;SR=1178|1000;SA=1|1;SB=0.5;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	117475	.	T	C	1.49	PASS	NS=367;DP=2292;AC=1;AN=734;AF=0.0013624;RA=2284;AA=4;SR=1049|1235;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS;CpG
+20	117575	.	A	G	0.598	PASS	NS=358;DP=2097;AC=1;AN=716;AF=0.0013966;RA=2089;AA=3;SR=957|1132;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TS;CpG
+20	117618	.	T	G	0.0451	PASS	NS=366;DP=2178;AC=1;AN=732;AF=0.0013661;RA=2162;AA=10;SR=1020|1142;SA=8|2;SB=0.8;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TV
+20	117683	.	G	C	0.218	PASS	NS=359;DP=2011;AC=2;AN=718;AF=0.0027855;RA=1997;AA=5;SR=926|1071;SA=3|2;SB=0.6;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TV
+20	117685	.	T	A	0.339	PASS	NS=360;DP=2018;AC=1;AN=720;AF=0.0013889;RA=2009;AA=2;SR=939|1070;SA=1|1;SB=0.5;AB=0.83333;ABR=10;ABA=2;RUN=2;SNP;TV
+20	117719	.	T	C	99.0	PASS	NS=363;DP=2041;AC=1;AN=726;AF=0.0013774;RA=2030;AA=8;SR=948|1082;SA=7|1;SB=0.875;AB=0.36364;ABR=4;ABA=7;RUN=2;SNP;TS
+20	117742	.	T	A	0.194	PASS	NS=361;DP=1998;AC=1;AN=722;AF=0.001385;RA=1990;AA=4;SR=956|1034;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	117749	.	C	G	8.36	PASS	NS=360;DP=1983;AC=1;AN=720;AF=0.0013889;RA=1974;AA=4;SR=956|1018;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	117769	.	A	G	3.93	PASS	NS=358;DP=1977;AC=1;AN=716;AF=0.0013966;RA=1968;AA=4;SR=942|1026;SA=1|3;SB=0.25;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	117770	.	C	T	1.74	PASS	NS=359;DP=1977;AC=1;AN=718;AF=0.0013928;RA=1969;AA=2;SR=938|1031;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	117892	.	C	T	99.0	PASS	NS=363;DP=2099;AC=4;AN=726;AF=0.0055096;RA=2082;AA=14;SR=1169|913;SA=6|8;SB=0.42857;AB=0.56667;ABR=17;ABA=13;RUN=1;SNP;TS;CpG
+20	117925	.	G	C	3.85	PASS	NS=367;DP=2130;AC=1;AN=734;AF=0.0013624;RA=2121;AA=2;SR=1246|875;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	117968	.	G	A	69.7	PASS	NS=362;DP=2113;AC=1;AN=724;AF=0.0013812;RA=2094;AA=9;SR=1143|951;SA=6|3;SB=0.66667;AB=0.33333;ABR=3;ABA=6;RUN=2;SNP;TS
+20	117971	.	T	C	0.191	PASS	NS=361;DP=2106;AC=1;AN=722;AF=0.001385;RA=2096;AA=4;SR=1139|957;SA=3|1;SB=0.75;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS;CpG
+20	118008	.	G	A	99.0	PASS	NS=369;DP=2249;AC=98;AN=738;AF=0.13279;RA=1978;AA=264;SR=1025|953;SA=161|103;SB=0.60985;AB=0.51459;ABR=194;ABA=183;RUN=1;SNP;TS
+20	118034	.	A	G	43.1	PASS	NS=368;DP=2280;AC=1;AN=736;AF=0.0013587;RA=2262;AA=8;SR=1177|1085;SA=2|6;SB=0.25;AB=0.63636;ABR=7;ABA=4;RUN=1;SNP;TS
+20	118087	.	A	G	99.0	PASS	NS=366;DP=2284;AC=95;AN=732;AF=0.12978;RA=1966;AA=308;SR=1170|796;SA=194|114;SB=0.62987;AB=0.51454;ABR=230;ABA=214;RUN=1;SNP;TS;CpG
+20	118150	.	A	G	99.0	PASS	NS=366;DP=2270;AC=96;AN=732;AF=0.13115;RA=1946;AA=312;SR=1208|738;SA=191|121;SB=0.61218;AB=0.50302;ABR=250;ABA=246;RUN=1;SNP;TS;CpG
+20	118166	.	C	T	75.1	PASS	NS=369;DP=2290;AC=1;AN=738;AF=0.001355;RA=2268;AA=8;SR=1313|955;SA=2|6;SB=0.25;AB=0.14286;ABR=1;ABA=6;RUN=1;SNP;TS
+20	118169	.	T	C	0.287	PASS	NS=369;DP=2281;AC=1;AN=738;AF=0.001355;RA=2254;AA=14;SR=1275|979;SA=9|5;SB=0.64286;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	118222	.	A	G	99.0	PASS	NS=367;DP=2462;AC=20;AN=734;AF=0.027248;RA=2368;AA=84;SR=1080|1288;SA=41|43;SB=0.4881;AB=0.47134;ABR=74;ABA=82;RUN=1;SNP;TS;CpG
+20	118249	.	C	A	2.99	PASS	NS=369;DP=2568;AC=1;AN=738;AF=0.001355;RA=2555;AA=6;SR=1170|1385;SA=3|3;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	118252	.	T	C	41.3	PASS	NS=369;DP=2588;AC=1;AN=738;AF=0.001355;RA=2562;AA=10;SR=1173|1389;SA=6|4;SB=0.6;AB=0.57143;ABR=4;ABA=3;RUN=1;SNP;TS
+20	118410	.	T	C	99.0	PASS	NS=366;DP=2417;AC=3;AN=732;AF=0.0040984;RA=2365;AA=26;SR=1156|1209;SA=17|9;SB=0.65385;AB=0.52174;ABR=12;ABA=11;RUN=1;SNP;TS
+20	118477	.	G	C	40.1	PASS	NS=368;DP=2524;AC=1;AN=736;AF=0.0013587;RA=2501;AA=9;SR=1136|1365;SA=4|5;SB=0.44444;AB=0.55556;ABR=5;ABA=4;RUN=1;SNP;TV
+20	118525	.	T	A	0.143	PASS	NS=369;DP=2559;AC=1;AN=738;AF=0.001355;RA=2528;AA=5;SR=1373|1155;SA=3|2;SB=0.6;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	118535	.	G	A	99.0	PASS	NS=370;DP=2547;AC=25;AN=740;AF=0.033784;RA=2432;AA=98;SR=1401|1031;SA=47|51;SB=0.47959;AB=0.51872;ABR=97;ABA=89;RUN=1;SNP;TS;CpG
+20	118618	.	C	T	1.78	PASS	NS=367;DP=2563;AC=1;AN=734;AF=0.0013624;RA=2546;AA=3;SR=1375|1171;SA=1|2;SB=0.33333;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	118657	.	C	T	0.168	PASS	NS=368;DP=2612;AC=1;AN=736;AF=0.0013587;RA=2602;AA=3;SR=1428|1174;SA=2|1;SB=0.66667;AB=0.85714;ABR=12;ABA=2;RUN=1;SNP;TS
+20	118780	.	T	C	0.605	PASS	NS=368;DP=2715;AC=1;AN=736;AF=0.0013587;RA=2696;AA=6;SR=1421|1275;SA=1|5;SB=0.16667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	118803	.	C	T	2.66	PASS	NS=370;DP=2742;AC=1;AN=740;AF=0.0013514;RA=2728;AA=4;SR=1422|1306;SA=2|2;SB=0.5;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TS
+20	118878	.	C	A	4.89	PASS	NS=371;DP=2432;AC=1;AN=742;AF=0.0013477;RA=2419;AA=6;SR=1178|1241;SA=4|2;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	118954	.	G	A	0.29	PASS	NS=357;DP=2361;AC=3;AN=714;AF=0.0042017;RA=2337;AA=8;SR=1048|1289;SA=4|4;SB=0.5;AB=0.33333;ABR=2;ABA=4;RUN=2;SNP;TS
+20	118963	.	C	T	0.62	PASS	NS=359;DP=2420;AC=1;AN=718;AF=0.0013928;RA=2411;AA=4;SR=1067|1344;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	118973	.	G	C	1.48	PASS	NS=365;DP=2459;AC=2;AN=730;AF=0.0027397;RA=2422;AA=13;SR=1098|1324;SA=7|6;SB=0.53846;AB=0.55556;ABR=5;ABA=4;RUN=1;SNP;TV
+20	119005	.	A	C	0.0651	PASS	NS=368;DP=2535;AC=1;AN=736;AF=0.0013587;RA=2503;AA=21;SR=1147|1356;SA=19|2;SB=0.90476;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	119035	.	G	C	1.82	PASS	NS=366;DP=2461;AC=1;AN=732;AF=0.0013661;RA=2443;AA=8;SR=1160|1283;SA=7|1;SB=0.875;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	119056	.	A	C	99.0	PASS	NS=368;DP=2408;AC=22;AN=736;AF=0.029891;RA=2343;AA=61;SR=1089|1254;SA=30|31;SB=0.4918;AB=0.57895;ABR=77;ABA=55;RUN=4;SNP;TV
+20	119085	.	G	T	11.6	PASS	NS=369;DP=2362;AC=1;AN=738;AF=0.001355;RA=2353;AA=3;SR=1098|1255;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	119295	.	C	T	5.3	PASS	NS=370;DP=2159;AC=1;AN=740;AF=0.0013514;RA=2150;AA=7;SR=909|1241;SA=3|4;SB=0.42857;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	119420	.	A	G	2.58	PASS	NS=365;DP=2001;AC=1;AN=730;AF=0.0013699;RA=1996;AA=3;SR=955|1041;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS;CpG
+20	119421	.	A	G	72.7	PASS	NS=366;DP=2005;AC=3;AN=732;AF=0.0040984;RA=1990;AA=10;SR=951|1039;SA=5|5;SB=0.5;AB=0.52941;ABR=9;ABA=8;RUN=1;SNP;TS
+20	119496	.	C	A	0.46	PASS	NS=355;DP=1848;AC=1;AN=710;AF=0.0014085;RA=1840;AA=5;SR=837|1003;SA=2|3;SB=0.4;AB=0.77778;ABR=7;ABA=2;RUN=5;SNP;TV
+20	119518	.	C	T	0.149	PASS	NS=356;DP=1941;AC=1;AN=712;AF=0.0014045;RA=1932;AA=2;SR=900|1032;SA=1|1;SB=0.5;AB=0.85714;ABR=12;ABA=2;RUN=3;SNP;TS
+20	119534	.	A	G	99.0	PASS	NS=360;DP=2109;AC=39;AN=720;AF=0.054167;RA=1989;AA=114;SR=879|1110;SA=47|67;SB=0.41228;AB=0.47396;ABR=91;ABA=101;RUN=3;SNP;TS
+20	119596	.	A	G	99.0	PASS	NS=366;DP=2103;AC=39;AN=732;AF=0.053279;RA=2004;AA=97;SR=874|1130;SA=41|56;SB=0.42268;AB=0.54706;ABR=93;ABA=76;RUN=1;SNP;TS
+20	119599	.	A	T	4.27	PASS	NS=365;DP=2081;AC=1;AN=730;AF=0.0013699;RA=2067;AA=5;SR=906|1161;SA=4|1;SB=0.8;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	119714	.	G	A	0.547	PASS	NS=314;DP=1079;AC=1;AN=628;AF=0.0015924;RA=1068;AA=6;SR=496|572;SA=2|4;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS;CpG
+20	119730	.	A	G	99.0	PASS	NS=308;DP=1035;AC=49;AN=616;AF=0.079545;RA=956;AA=69;SR=376|580;SA=24|45;SB=0.34783;AB=0.52427;ABR=54;ABA=48;RUN=1;SNP;TS;CpG
+20	119734	.	T	C	4.93	PASS	NS=310;DP=1053;AC=1;AN=620;AF=0.0016129;RA=1034;AA=10;SR=379|655;SA=2|8;SB=0.2;AB=0.5;ABR=3;ABA=3;RUN=3;SNP;TS
+20	119897	.	T	C	0.0526	PASS	NS=263;DP=770;AC=1;AN=526;AF=0.0019011;RA=760;AA=7;SR=349|411;SA=4|3;SB=0.57143;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS;CpG
+20	119918	.	A	G	44.3	PASS	NS=294;DP=924;AC=3;AN=588;AF=0.005102;RA=911;AA=11;SR=340|571;SA=2|9;SB=0.18182;AB=0.52632;ABR=10;ABA=9;RUN=1;SNP;TS
+20	119945	.	T	C	0.0906	PASS	NS=335;DP=1320;AC=1;AN=670;AF=0.0014925;RA=1312;AA=3;SR=458|854;SA=1|2;SB=0.33333;AB=0.7;ABR=7;ABA=3;RUN=2;SNP;TS;CpG
+20	119983	.	T	C	18.0	PASS	NS=351;DP=1675;AC=1;AN=702;AF=0.0014245;RA=1664;AA=4;SR=800|864;SA=2|2;SB=0.5;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	119986	.	T	A	99.0	PASS	NS=348;DP=1647;AC=34;AN=696;AF=0.048851;RA=1580;AA=64;SR=781|799;SA=29|35;SB=0.45312;AB=0.55046;ABR=60;ABA=49;RUN=3;SNP;TV
+20	119992	.	A	T	0.112	PASS	NS=348;DP=1643;AC=1;AN=696;AF=0.0014368;RA=1632;AA=3;SR=839|793;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	120093	.	T	C	99.0	PASS	NS=336;DP=1402;AC=35;AN=672;AF=0.052083;RA=1335;AA=61;SR=744|591;SA=39|22;SB=0.63934;AB=0.53153;ABR=59;ABA=52;RUN=1;SNP;TS
+20	120127	.	T	C	99.0	PASS	NS=345;DP=1541;AC=39;AN=690;AF=0.056522;RA=1447;AA=87;SR=872|575;SA=51|36;SB=0.58621;AB=0.47436;ABR=74;ABA=82;RUN=1;SNP;TS
+20	120210	.	G	C	99.0	PASS	NS=366;DP=2009;AC=16;AN=732;AF=0.021858;RA=1951;AA=51;SR=1192|759;SA=31|20;SB=0.60784;AB=0.44595;ABR=33;ABA=40;RUN=1;SNP;TV
+20	120234	.	C	A	99.0	PASS	NS=363;DP=1980;AC=21;AN=726;AF=0.028926;RA=1914;AA=62;SR=1162|752;SA=31|31;SB=0.5;AB=0.53982;ABR=61;ABA=52;RUN=6;SNP;TV
+20	120289	.	T	C	1.51	PASS	NS=359;DP=2131;AC=1;AN=718;AF=0.0013928;RA=2120;AA=4;SR=1226|894;SA=2|2;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	120327	.	A	G	99.0	PASS	NS=365;DP=2183;AC=3;AN=730;AF=0.0041096;RA=2172;AA=9;SR=1158|1014;SA=4|5;SB=0.44444;AB=0.52941;ABR=9;ABA=8;RUN=1;SNP;TS;CpG
+20	120353	.	T	C	99.0	PASS	NS=361;DP=2069;AC=15;AN=722;AF=0.020776;RA=2029;AA=35;SR=1056|973;SA=16|19;SB=0.45714;AB=0.34043;ABR=16;ABA=31;RUN=1;SNP;TS;CpG
+20	120463	.	T	C	0.168	PASS	NS=357;DP=2200;AC=1;AN=714;AF=0.0014006;RA=2187;AA=4;SR=1102|1085;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TS
+20	120464	.	T	C	0.96	PASS	NS=357;DP=2188;AC=1;AN=714;AF=0.0014006;RA=2158;AA=17;SR=1089|1069;SA=3|14;SB=0.17647;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	120471	.	A	G	99.0	PASS	NS=355;DP=2155;AC=292;AN=710;AF=0.41127;RA=1332;AA=818;SR=667|665;SA=419|399;SB=0.51222;AB=0.50122;ABR=411;ABA=408;RUN=2;SNP;TS;CpG
+20	120487	.	A	G	0.161	PASS	NS=361;DP=2223;AC=1;AN=722;AF=0.001385;RA=2217;AA=2;SR=1044|1173;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS;CpG
+20	120491	.	G	A	2.04	PASS	NS=361;DP=2213;AC=1;AN=722;AF=0.001385;RA=2201;AA=3;SR=1022|1179;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=4;SNP;TS
+20	120534	.	T	A	2.45	PASS	NS=366;DP=2334;AC=1;AN=732;AF=0.0013661;RA=2317;AA=6;SR=1093|1224;SA=2|4;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	120535	.	G	A	3.2	PASS	NS=366;DP=2332;AC=1;AN=732;AF=0.0013661;RA=2321;AA=5;SR=1104|1217;SA=2|3;SB=0.4;AB=0.57143;ABR=4;ABA=3;RUN=1;SNP;TS
+20	120553	.	G	A	99.0	PASS	NS=363;DP=2295;AC=38;AN=726;AF=0.052342;RA=2196;AA=93;SR=1087|1109;SA=46|47;SB=0.49462;AB=0.5509;ABR=92;ABA=75;RUN=1;SNP;TS
+20	120746	.	A	G	0.107	PASS	NS=356;DP=2078;AC=1;AN=712;AF=0.0014045;RA=2073;AA=3;SR=1040|1033;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	120761	.	A	G	4.72	PASS	NS=360;DP=2025;AC=2;AN=720;AF=0.0027778;RA=2013;AA=7;SR=1011|1002;SA=2|5;SB=0.28571;AB=0.72727;ABR=8;ABA=3;RUN=1;SNP;TS
+20	120863	.	T	C	7.31	PASS	NS=356;DP=2117;AC=1;AN=712;AF=0.0014045;RA=2108;AA=2;SR=1114|994;SA=1|1;SB=0.5;AB=0;ABR=0;ABA=2;RUN=1;SNP;TS
+20	120911	.	T	C	4.66	PASS	NS=364;DP=2171;AC=1;AN=728;AF=0.0013736;RA=2152;AA=3;SR=1110|1042;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	121040	.	C	T	0.0497	PASS	NS=351;DP=2064;AC=1;AN=702;AF=0.0014245;RA=2047;AA=3;SR=1039|1008;SA=3|0;SB=1;AB=0.8;ABR=4;ABA=1;RUN=1;SNP;TS
+20	121125	.	A	G	2.32	PASS	NS=362;DP=2128;AC=1;AN=724;AF=0.0013812;RA=2124;AA=3;SR=1089|1035;SA=3|0;SB=1;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	121188	.	G	A	99.0	PASS	NS=363;DP=1947;AC=35;AN=726;AF=0.048209;RA=1842;AA=103;SR=897|945;SA=51|52;SB=0.49515;AB=0.4069;ABR=59;ABA=86;RUN=2;SNP;TS
+20	121235	.	C	T	0.234	PASS	NS=360;DP=1946;AC=1;AN=720;AF=0.0013889;RA=1935;AA=3;SR=820|1115;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	121288	.	G	A	43.3	PASS	NS=364;DP=2030;AC=1;AN=728;AF=0.0013736;RA=2021;AA=5;SR=756|1265;SA=1|4;SB=0.2;AB=0.625;ABR=5;ABA=3;RUN=1;SNP;TS;CpG
+20	121310	.	A	C	99.0	PASS	NS=358;DP=1910;AC=195;AN=716;AF=0.27235;RA=1431;AA=477;SR=602|829;SA=212|265;SB=0.44444;AB=0.52581;ABR=326;ABA=294;RUN=1;SNP;TV
+20	121478	.	C	A	99.0	PASS	NS=332;DP=1073;AC=248;AN=664;AF=0.37349;RA=685;AA=338;SR=373|312;SA=200|138;SB=0.59172;AB=0.49371;ABR=157;ABA=143;RUN=1;SNP;TV
+20	121493	.	C	T	99.0	PASS	NS=304;DP=848;AC=120;AN=608;AF=0.19737;RA=641;AA=202;SR=285|356;SA=94|108;SB=0.46535;AB=0.59302;ABR=204;ABA=137;RUN=18;SNP;TS
+20	121543	.	C	T	73.2	PASS	NS=355;DP=1309;AC=2;AN=710;AF=0.0028169;RA=1270;AA=6;SR=571|699;SA=3|3;SB=0.5;AB=0.33333;ABR=3;ABA=5;RUN=1;SNP;TS
+20	121609	.	G	C	99.0	PASS	NS=362;DP=1963;AC=22;AN=724;AF=0.030387;RA=1886;AA=71;SR=987|899;SA=41|30;SB=0.57746;AB=0.496;ABR=62;ABA=63;RUN=1;SNP;TV
+20	121682	.	C	A	2.49	PASS	NS=361;DP=1952;AC=1;AN=722;AF=0.001385;RA=1941;AA=6;SR=1070|871;SA=3|3;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	121727	.	T	C	0.137	PASS	NS=365;DP=2073;AC=1;AN=730;AF=0.0013699;RA=2064;AA=4;SR=1229|835;SA=3|1;SB=0.75;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TS;CpG
+20	121761	.	G	A	0.814	PASS	NS=363;DP=1992;AC=1;AN=726;AF=0.0013774;RA=1983;AA=4;SR=1067|916;SA=1|3;SB=0.25;AB=0.81818;ABR=9;ABA=2;RUN=2;SNP;TS
+20	121787	.	A	G	5.77	PASS	NS=368;DP=1959;AC=1;AN=736;AF=0.0013587;RA=1946;AA=6;SR=952|994;SA=3|3;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS;CpG
+20	121824	.	C	T	99.0	PASS	NS=366;DP=1902;AC=299;AN=732;AF=0.40847;RA=1098;AA=764;SR=470|628;SA=353|411;SB=0.46204;AB=0.48175;ABR=330;ABA=346;RUN=1;SNP;TS
+20	121975	.	C	T	0.0658	PASS	NS=368;DP=2209;AC=1;AN=736;AF=0.0013587;RA=2200;AA=2;SR=1147|1053;SA=2|0;SB=1;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS;CpG
+20	121976	.	G	A	99.0	PASS	NS=368;DP=2174;AC=320;AN=736;AF=0.43478;RA=1282;AA=888;SR=680|602;SA=467|421;SB=0.5259;AB=0.50249;ABR=404;ABA=399;RUN=1;SNP;TS;CpG
+20	121986	.	A	G	29.8	PASS	NS=366;DP=2153;AC=4;AN=732;AF=0.0054645;RA=2143;AA=7;SR=1159|984;SA=3|4;SB=0.42857;AB=0.69565;ABR=16;ABA=7;RUN=1;SNP;TS
+20	122072	.	T	C	0.195	PASS	NS=369;DP=2181;AC=4;AN=738;AF=0.0054201;RA=2151;AA=13;SR=1122|1029;SA=13|0;SB=1;AB=0.76;ABR=19;ABA=6;RUN=1;SNP;TS
+20	122202	.	C	T	2.54	PASS	NS=365;DP=2275;AC=1;AN=730;AF=0.0013699;RA=2262;AA=3;SR=1021|1241;SA=2|1;SB=0.66667;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	122214	.	A	T	0.559	PASS	NS=368;DP=2327;AC=1;AN=736;AF=0.0013587;RA=2321;AA=5;SR=1038|1283;SA=3|2;SB=0.6;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	122337	.	A	G	13.1	PASS	NS=370;DP=2216;AC=1;AN=740;AF=0.0013514;RA=2208;AA=4;SR=1130|1078;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	122411	.	C	T	1.75	PASS	NS=366;DP=2162;AC=1;AN=732;AF=0.0013661;RA=2155;AA=3;SR=1002|1153;SA=2|1;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	122505	.	T	G	99.0	PASS	NS=358;DP=2049;AC=24;AN=716;AF=0.03352;RA=1985;AA=61;SR=948|1037;SA=23|38;SB=0.37705;AB=0.48936;ABR=46;ABA=48;RUN=1;SNP;TV
+20	122508	.	G	A	99.0	PASS	NS=358;DP=2024;AC=118;AN=716;AF=0.1648;RA=1718;AA=301;SR=831|887;SA=133|168;SB=0.44186;AB=0.51299;ABR=237;ABA=224;RUN=4;SNP;TS
+20	122511	.	T	C	99.0	PASS	NS=363;DP=2032;AC=20;AN=726;AF=0.027548;RA=1967;AA=59;SR=932|1035;SA=27|32;SB=0.45763;AB=0.39706;ABR=27;ABA=41;RUN=2;SNP;TS
+20	122548	.	C	T	99.0	PASS	NS=356;DP=1990;AC=37;AN=712;AF=0.051966;RA=1899;AA=86;SR=950|949;SA=49|37;SB=0.56977;AB=0.51471;ABR=70;ABA=66;RUN=6;SNP;TS
+20	122637	.	G	T	0.0819	PASS	NS=365;DP=2023;AC=1;AN=730;AF=0.0013699;RA=2003;AA=14;SR=955|1048;SA=6|8;SB=0.42857;AB=0.75;ABR=3;ABA=1;RUN=2;SNP;TV
+20	122706	.	G	A	13.0	PASS	NS=362;DP=2089;AC=3;AN=724;AF=0.0041436;RA=2063;AA=10;SR=944|1119;SA=6|4;SB=0.6;AB=0.4375;ABR=7;ABA=9;RUN=5;SNP;TS
+20	122770	.	T	C	0.0898	PASS	NS=359;DP=2007;AC=1;AN=718;AF=0.0013928;RA=2001;AA=3;SR=951|1050;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	122897	.	C	G	63.7	PASS	NS=367;DP=2167;AC=1;AN=734;AF=0.0013624;RA=2145;AA=11;SR=1277|868;SA=6|5;SB=0.54545;AB=0.45455;ABR=5;ABA=6;RUN=2;SNP;TV
+20	122913	.	G	C	33.5	PASS	NS=368;DP=2131;AC=1;AN=736;AF=0.0013587;RA=2115;AA=7;SR=1201|914;SA=5|2;SB=0.71429;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TV
+20	122977	.	T	A	0.153	PASS	NS=368;DP=2071;AC=3;AN=736;AF=0.0040761;RA=2056;AA=6;SR=1062|994;SA=3|3;SB=0.5;AB=0.71429;ABR=10;ABA=4;RUN=4;SNP;TV
+20	122995	.	C	G	0.222	PASS	NS=368;DP=2170;AC=1;AN=736;AF=0.0013587;RA=2158;AA=3;SR=1124|1034;SA=3|0;SB=1;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	123021	.	C	T	0.0437	PASS	NS=368;DP=2290;AC=2;AN=736;AF=0.0027174;RA=2281;AA=4;SR=1221|1060;SA=3|1;SB=0.75;AB=0.76923;ABR=10;ABA=3;RUN=3;SNP;TS
+20	123037	.	T	C	99.0	PASS	NS=367;DP=2305;AC=4;AN=734;AF=0.0054496;RA=2285;AA=13;SR=1267|1018;SA=10|3;SB=0.76923;AB=0.63333;ABR=19;ABA=11;RUN=2;SNP;TS
+20	123073	.	C	T	0.404	PASS	NS=371;DP=2357;AC=2;AN=742;AF=0.0026954;RA=2341;AA=7;SR=1293|1048;SA=5|2;SB=0.71429;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TS
+20	123251	.	T	C	71.0	PASS	NS=363;DP=2413;AC=1;AN=726;AF=0.0013774;RA=2393;AA=10;SR=1226|1167;SA=7|3;SB=0.7;AB=0.5;ABR=4;ABA=4;RUN=1;SNP;TS
+20	123318	.	T	C	99.0	PASS	NS=367;DP=2371;AC=24;AN=734;AF=0.032698;RA=2289;AA=73;SR=1174|1115;SA=41|32;SB=0.56164;AB=0.5;ABR=56;ABA=56;RUN=1;SNP;TS
+20	123404	.	T	A	6.08	PASS	NS=365;DP=2328;AC=1;AN=730;AF=0.0013699;RA=2304;AA=6;SR=1114|1190;SA=4|2;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	123499	.	C	T	99.0	PASS	NS=367;DP=2330;AC=5;AN=734;AF=0.006812;RA=2298;AA=18;SR=1062|1236;SA=6|12;SB=0.33333;AB=0.38462;ABR=10;ABA=16;RUN=2;SNP;TS
+20	123500	.	A	G	0.191	PASS	NS=367;DP=2342;AC=1;AN=734;AF=0.0013624;RA=2317;AA=13;SR=1062|1255;SA=3|10;SB=0.23077;AB=0.77778;ABR=7;ABA=2;RUN=3;SNP;TS;CpG
+20	123513	.	A	G	1.47	PASS	NS=368;DP=2373;AC=1;AN=736;AF=0.0013587;RA=2358;AA=5;SR=1071|1287;SA=2|3;SB=0.4;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TS
+20	123556	.	C	G	7.19	PASS	NS=371;DP=2383;AC=1;AN=742;AF=0.0013477;RA=2370;AA=6;SR=1058|1312;SA=2|4;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	123564	.	T	C	0.229	PASS	NS=372;DP=2373;AC=1;AN=744;AF=0.0013441;RA=2348;AA=10;SR=1045|1303;SA=3|7;SB=0.3;AB=0.72727;ABR=8;ABA=2;RUN=5;SNP;TS
+20	123809	.	A	T	0.953	PASS	NS=356;DP=1910;AC=1;AN=712;AF=0.0014045;RA=1896;AA=7;SR=843|1053;SA=5|2;SB=0.71429;AB=0.625;ABR=5;ABA=3;RUN=2;SNP;TV
+20	123979	.	C	A	0.314	PASS	NS=363;DP=2152;AC=1;AN=726;AF=0.0013774;RA=2141;AA=3;SR=1118|1023;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	124059	.	C	T	37.8	PASS	NS=358;DP=1984;AC=3;AN=716;AF=0.0041899;RA=1971;AA=7;SR=971|1000;SA=5|2;SB=0.71429;AB=0.44444;ABR=4;ABA=5;RUN=1;SNP;TS;CpG
+20	124060	.	G	A	34.6	PASS	NS=359;DP=1991;AC=1;AN=718;AF=0.0013928;RA=1983;AA=3;SR=995|988;SA=2|1;SB=0.66667;AB=0.5;ABR=3;ABA=3;RUN=2;SNP;TS;CpG
+20	124137	.	C	A	0.0701	PASS	NS=357;DP=1933;AC=1;AN=714;AF=0.0014006;RA=1922;AA=4;SR=990|932;SA=0|4;SB=0;AB=0.5;ABR=1;ABA=1;RUN=2;SNP;TV
+20	124148	.	A	G	0.344	PASS	NS=358;DP=1957;AC=2;AN=716;AF=0.0027933;RA=1947;AA=6;SR=989|958;SA=1|5;SB=0.16667;AB=0.8;ABR=12;ABA=3;RUN=1;SNP;TS
+20	124229	.	T	C	0.672	PASS	NS=356;DP=1979;AC=1;AN=712;AF=0.0014045;RA=1972;AA=4;SR=1025|947;SA=1|3;SB=0.25;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	124230	.	A	G	0.0816	PASS	NS=356;DP=1970;AC=1;AN=712;AF=0.0014045;RA=1959;AA=4;SR=1026|933;SA=1|3;SB=0.25;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	124249	.	A	G	99.0	PASS	NS=359;DP=1969;AC=41;AN=718;AF=0.057103;RA=1864;AA=101;SR=974|890;SA=55|46;SB=0.54455;AB=0.51977;ABR=92;ABA=85;RUN=1;SNP;TS;CpG
+20	124302	.	A	C	99.0	PASS	NS=358;DP=2007;AC=319;AN=716;AF=0.44553;RA=1185;AA=819;SR=577|608;SA=392|427;SB=0.47863;AB=0.51934;ABR=376;ABA=348;RUN=2;SNP;TV
+20	124335	.	C	T	99.0	PASS	NS=361;DP=2035;AC=4;AN=722;AF=0.0055402;RA=2013;AA=15;SR=929|1084;SA=10|5;SB=0.66667;AB=0.3913;ABR=9;ABA=14;RUN=1;SNP;TS
+20	124412	.	C	T	99.0	PASS	NS=357;DP=2005;AC=307;AN=714;AF=0.42997;RA=1207;AA=795;SR=602|605;SA=400|395;SB=0.50314;AB=0.51286;ABR=379;ABA=360;RUN=1;SNP;TS
+20	124511	.	T	A	0.647	PASS	NS=365;DP=2141;AC=1;AN=730;AF=0.0013699;RA=2133;AA=4;SR=1077|1056;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TV
+20	124607	.	A	G	2.28	PASS	NS=357;DP=1872;AC=1;AN=714;AF=0.0014006;RA=1865;AA=2;SR=930|935;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	124737	.	A	C	99.0	PASS	NS=367;DP=2024;AC=4;AN=734;AF=0.0054496;RA=2003;AA=16;SR=1046|957;SA=11|5;SB=0.6875;AB=0.26316;ABR=5;ABA=14;RUN=1;SNP;TV
+20	124827	.	T	C	1.7	PASS	NS=367;DP=2059;AC=1;AN=734;AF=0.0013624;RA=2048;AA=4;SR=987|1061;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	124848	.	A	G	36.5	PASS	NS=364;DP=2077;AC=1;AN=728;AF=0.0013736;RA=2060;AA=6;SR=966|1094;SA=2|4;SB=0.33333;AB=0.57143;ABR=4;ABA=3;RUN=1;SNP;TS
+20	124878	.	G	A	0.22	PASS	NS=361;DP=2060;AC=1;AN=722;AF=0.001385;RA=2049;AA=4;SR=974|1075;SA=3|1;SB=0.75;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	124920	.	A	G	76.0	PASS	NS=361;DP=1956;AC=1;AN=722;AF=0.001385;RA=1949;AA=6;SR=984|965;SA=2|4;SB=0.33333;AB=0.14286;ABR=1;ABA=6;RUN=1;SNP;TS;CpG
+20	124942	.	A	T	1.44	PASS	NS=362;DP=2015;AC=1;AN=724;AF=0.0013812;RA=2007;AA=4;SR=1107|900;SA=1|3;SB=0.25;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	124998	.	T	C	99.0	PASS	NS=366;DP=2204;AC=29;AN=732;AF=0.039617;RA=2131;AA=66;SR=1132|999;SA=36|30;SB=0.54545;AB=0.54902;ABR=56;ABA=46;RUN=1;SNP;TS
+20	125096	.	C	G	4.18	PASS	NS=363;DP=2095;AC=1;AN=726;AF=0.0013774;RA=2082;AA=2;SR=1071|1011;SA=2|0;SB=1;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	125109	.	A	T	0.0858	PASS	NS=365;DP=2091;AC=2;AN=730;AF=0.0027397;RA=2080;AA=7;SR=1103|977;SA=7|0;SB=1;AB=0.66667;ABR=6;ABA=3;RUN=8;SNP;TV
+20	125121	.	C	T	99.0	PASS	NS=364;DP=2075;AC=208;AN=728;AF=0.28571;RA=1472;AA=599;SR=826|646;SA=335|264;SB=0.55927;AB=0.49868;ABR=377;ABA=378;RUN=1;SNP;TS
+20	125179	.	C	A	99.0	PASS	NS=368;DP=2155;AC=7;AN=736;AF=0.0095109;RA=2127;AA=26;SR=1123|1004;SA=16|10;SB=0.61538;AB=0.36842;ABR=14;ABA=24;RUN=2;SNP;TV
+20	125266	.	T	A	3.47	PASS	NS=364;DP=2138;AC=1;AN=728;AF=0.0013736;RA=2123;AA=5;SR=907|1216;SA=1|4;SB=0.2;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	125381	.	A	G	4.69	PASS	NS=362;DP=2102;AC=1;AN=724;AF=0.0013812;RA=2094;AA=3;SR=919|1175;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	125450	.	G	A	0.364	PASS	NS=359;DP=1881;AC=1;AN=718;AF=0.0013928;RA=1868;AA=5;SR=862|1006;SA=1|4;SB=0.2;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	125470	.	A	G	0.602	PASS	NS=360;DP=1870;AC=1;AN=720;AF=0.0013889;RA=1855;AA=5;SR=909|946;SA=3|2;SB=0.6;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
diff -r 000000000000 -r b001b50f2009 test-data/test_annotated_dbsnp.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_annotated_dbsnp.vcf	Mon Jan 27 09:28:06 2014 -0500
@@ -0,0 +1,1001 @@
+##fileformat=VCFv4.0
+##fileDate=20110215
+##source=freeBayes version 0.4.1
+##reference=/d2/data/references/build_37/human_reference_v37.fa
+##phasing=none
+##commandline="/share/software/freebayes/bin/freebayes --stdin --no-filters --min-alternate-count 2 --posterior-integration-depth 100 --pvar 0.01 --vcf /d1/data/1000G/20101123/filteringTests/AFR/mosaik/noFilters/Pipeline/none//freebayes/freebayes.20:0-1000000.baq.20110210.vcf --fasta-reference /d2/data/references/build_37/human_reference_v37.fa --region 20:0..1000000"
+##vcfPytools=merge freebayes.20:0-1000000.baq.20110210.vcf, freebayes.20:1000000-2000000.baq.20110210.vcf, freebayes.20:2000000-3000000.baq.20110210.vcf, freebayes.20:3000000-4000000.baq.20110210.vcf, freebayes.20:4000000-5000000.baq.20110210.vcf, freebayes.20:5000000-6000000.baq.20110210.vcf, freebayes.20:6000000-7000000.baq.20110210.vcf, freebayes.20:7000000-8000000.baq.20110210.vcf, freebayes.20:8000000-9000000.baq.20110210.vcf, freebayes.20:9000000-10000000.baq.20110210.vcf, freebayes.20:10000000-11000000.baq.20110210.vcf, freebayes.20:11000000-12000000.baq.20110210.vcf, freebayes.20:12000000-13000000.baq.20110210.vcf, freebayes.20:13000000-14000000.baq.20110210.vcf, freebayes.20:14000000-15000000.baq.20110210.vcf, freebayes.20:15000000-16000000.baq.20110210.vcf, freebayes.20:16000000-17000000.baq.20110210.vcf, freebayes.20:17000000-18000000.baq.20110210.vcf, freebayes.20:18000000-19000000.baq.20110210.vcf, freebayes.20:19000000-20000000.baq.20110210.vcf, freebayes.20:20000000-21000000.baq.20110210.vcf, freebayes.20:21000000-22000000.baq.20110210.vcf, freebayes.20:22000000-23000000.baq.20110210.vcf, freebayes.20:23000000-24000000.baq.20110210.vcf, freebayes.20:24000000-25000000.baq.20110210.vcf, freebayes.20:25000000-26000000.baq.20110210.vcf, freebayes.20:26000000-27000000.baq.20110210.vcf, freebayes.20:27000000-28000000.baq.20110210.vcf, freebayes.20:28000000-29000000.baq.20110210.vcf, freebayes.20:29000000-30000000.baq.20110210.vcf, freebayes.20:30000000-31000000.baq.20110210.vcf, freebayes.20:31000000-32000000.baq.20110210.vcf, freebayes.20:32000000-33000000.baq.20110210.vcf, freebayes.20:33000000-34000000.baq.20110210.vcf, freebayes.20:34000000-35000000.baq.20110210.vcf, freebayes.20:35000000-36000000.baq.20110210.vcf, freebayes.20:36000000-37000000.baq.20110210.vcf, freebayes.20:37000000-38000000.baq.20110210.vcf, freebayes.20:38000000-39000000.baq.20110210.vcf, freebayes.20:39000000-40000000.baq.20110210.vcf, freebayes.20:40000000-41000000.baq.20110210.vcf, freebayes.20:41000000-42000000.baq.20110210.vcf, freebayes.20:42000000-43000000.baq.20110210.vcf, freebayes.20:43000000-44000000.baq.20110210.vcf, freebayes.20:44000000-45000000.baq.20110210.vcf, freebayes.20:45000000-46000000.baq.20110210.vcf, freebayes.20:46000000-47000000.baq.20110210.vcf, freebayes.20:47000000-48000000.baq.20110210.vcf, freebayes.20:48000000-49000000.baq.20110210.vcf, freebayes.20:49000000-50000000.baq.20110210.vcf, freebayes.20:50000000-51000000.baq.20110210.vcf, freebayes.20:51000000-52000000.baq.20110210.vcf, freebayes.20:52000000-53000000.baq.20110210.vcf, freebayes.20:53000000-54000000.baq.20110210.vcf, freebayes.20:54000000-55000000.baq.20110210.vcf, freebayes.20:55000000-56000000.baq.20110210.vcf, freebayes.20:56000000-57000000.baq.20110210.vcf, freebayes.20:57000000-58000000.baq.20110210.vcf, freebayes.20:58000000-59000000.baq.20110210.vcf, freebayes.20:59000000-60000000.baq.20110210.vcf, freebayes.20:60000000-61000000.baq.20110210.vcf, freebayes.20:61000000-62000000.baq.20110210.vcf, freebayes.20:62000000-63000000.baq.20110210.vcf, freebayes.20:63000000-63025520.baq.20110210.vcf
+##vcfPytools=
+##vcfPytools=annotated vcf file with dbSNP file /Users/rc/work/galaxy_lims/galaxy-central/database/files/000/dataset_60.dat
+##INFO=<ID=REPEAT,Number=1,Type=String,Description="Description of the local repeat structures flanking the current position">
+##INFO=<ID=DEL,Number=1,Type=Integer,Description="Length of deletion allele, if present">
+##INFO=<ID=INS,Number=1,Type=Integer,Description="Length of insertion allele, if present">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
+##INFO=<ID=TV,Number=0,Type=Flag,Description="transversion SNP">
+##INFO=<ID=TS,Number=0,Type=Flag,Description="transition SNP">
+##INFO=<ID=RA,Number=1,Type=Integer,Description="Reference allele observations">
+##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
+##INFO=<ID=AA,Number=1,Type=Integer,Description="Alternate allele observations">
+##INFO=<ID=ABA,Number=1,Type=Integer,Description="Alternate allele balance count: the number of sequence reads from apparent heterozygotes supporting the alternate allele">
+##INFO=<ID=AC,Number=1,Type=Integer,Description="Total number of alternate alleles in called genotypes">
+##INFO=<ID=AB,Number=1,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
+##INFO=<ID=AF,Number=1,Type=Float,Description="Estimated allele frequency in the range (0,1]">
+##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
+##INFO=<ID=ABR,Number=1,Type=Integer,Description="Reference allele balance count: the number of sequence reads from apparent heterozygotes supporting the reference allele">
+##INFO=<ID=RUN,Number=1,Type=Integer,Description="Homopolymer run length: the number of consecutive nucleotides in the reference genome matching the alternate allele prior to the current position">
+##INFO=<ID=SR,Number=1,Type=Integer,Description="Number of reference observations by strand, delimited by |: [forward]|[reverse]">
+##INFO=<ID=CpG,Number=0,Type=Flag,Description="CpG site (either CpG, TpG or CpA)">
+##INFO=<ID=MNP,Number=0,Type=Integer,Description="Length of MNP allele, if present">
+##INFO=<ID=SNP,Number=0,Type=Flag,Description="SNP allele">
+##INFO=<ID=SB,Number=1,Type=Float,Description="Strand bias for the alternate allele: a number between 0 and 1 representing the ratio of forward strand sequence reads showing the alternate allele to all reads, considering only reads from individuals called as heterozygous">
+##INFO=<ID=SA,Number=1,Type=Integer,Description="Number of alternate observations by strand, delimited by |: [forward]|[reverse]">
+##FORMAT=<ID=AA,Number=1,Type=Integer,Description="Alternate allele observations">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=SR,Number=1,Type=Integer,Description="Number of reference observations by strand, delimited by |: [forward]|[reverse]">
+##FORMAT=<ID=RA,Number=1,Type=Integer,Description="Reference allele observations">
+##FORMAT=<ID=SA,Number=1,Type=Integer,Description="Number of alternate observations by strand, delimited by |: [forward]|[reverse]">
+##FORMAT=<ID=GL,Number=1,Type=Float,Description="Genotype Likelihood">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
+20	60479	.	C	T	75.2	PASS	NS=368;DP=2111;AC=4;AN=736;AF=0.0054348;RA=2096;AA=9;SR=1153|943;SA=5|4;SB=0.55556;AB=0.47059;ABR=8;ABA=9;RUN=2;SNP;TS
+20	60571	.	C	A	99.0	PASS	NS=366;DP=2338;AC=6;AN=732;AF=0.0081967;RA=2293;AA=30;SR=1123|1170;SA=19|11;SB=0.63333;AB=0.51515;ABR=17;ABA=16;RUN=1;SNP;TV
+20	60828	.	T	G	8.94	PASS	NS=361;DP=2341;AC=3;AN=722;AF=0.0041551;RA=2267;AA=30;SR=1101|1166;SA=15|15;SB=0.5;AB=0.16667;ABR=1;ABA=4;RUN=3;SNP;TV
+20	61098	rs6078030	C	T	99.0	PASS	NS=366;DP=1780;AC=140;AN=732;AF=0.19126;RA=1457;AA=317;SR=600|857;SA=132|185;SB=0.4164;AB=0.56587;ABR=262;ABA=198;RUN=2;SNP;TS
+20	61270	.	A	C	1.01	PASS	NS=220;DP=449;AC=18;AN=440;AF=0.040909;RA=423;AA=23;SR=165|258;SA=6|17;SB=0.26087;AB=0.61111;ABR=11;ABA=7;RUN=1;SNP;TV
+20	61388	.	T	C	46.6	PASS	NS=314;DP=1036;AC=2;AN=628;AF=0.0031847;RA=1025;AA=6;SR=709|316;SA=2|4;SB=0.33333;AB=0.5;ABR=5;ABA=5;RUN=1;SNP;TS
+20	61409	.	A	G	36.0	PASS	NS=340;DP=1212;AC=1;AN=680;AF=0.0014706;RA=1207;AA=4;SR=876|331;SA=2|2;SB=0.5;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS
+20	61517	.	C	T	13.8	PASS	NS=363;DP=2032;AC=1;AN=726;AF=0.0013774;RA=2019;AA=7;SR=1200|819;SA=7|0;SB=1;AB=0.72727;ABR=8;ABA=3;RUN=4;SNP;TS
+20	61535	.	A	G	0.0666	PASS	NS=362;DP=2048;AC=1;AN=724;AF=0.0013812;RA=2037;AA=4;SR=1150|887;SA=3|1;SB=0.75;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	61586	.	C	A	0.0941	PASS	NS=362;DP=1953;AC=1;AN=724;AF=0.0013812;RA=1941;AA=6;SR=1062|879;SA=3|3;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	61651	.	C	A	99.0	PASS	NS=369;DP=2217;AC=6;AN=738;AF=0.0081301;RA=2190;AA=22;SR=1230|960;SA=12|10;SB=0.54545;AB=0.41176;ABR=14;ABA=20;RUN=4;SNP;TV
+20	61724	.	A	C	99.0	PASS	NS=369;DP=2442;AC=6;AN=738;AF=0.0081301;RA=2409;AA=29;SR=1205|1204;SA=16|13;SB=0.55172;AB=0.48889;ABR=22;ABA=23;RUN=2;SNP;TV
+20	61795	rs4814683	G	T	99.0	PASS	NS=368;DP=2464;AC=324;AN=736;AF=0.44022;RA=1426;AA=1032;SR=740|686;SA=519|513;SB=0.50291;AB=0.49956;ABR=568;ABA=565;RUN=1;SNP;TV
+20	61807	.	G	T	16.2	PASS	NS=369;DP=2523;AC=2;AN=738;AF=0.00271;RA=2506;AA=7;SR=1311|1195;SA=4|3;SB=0.57143;AB=0.625;ABR=5;ABA=3;RUN=1;SNP;TV
+20	61848	.	A	G	0.0723	PASS	NS=370;DP=2478;AC=1;AN=740;AF=0.0013514;RA=2458;AA=9;SR=1313|1145;SA=2|7;SB=0.22222;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TS;CpG
+20	61909	.	C	G	0.224	PASS	NS=366;DP=2253;AC=1;AN=732;AF=0.0013661;RA=2240;AA=4;SR=1131|1109;SA=1|3;SB=0.25;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	61986	.	G	A	0.054	PASS	NS=364;DP=2106;AC=1;AN=728;AF=0.0013736;RA=2072;AA=26;SR=906|1166;SA=0|26;SB=0;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	62100	rs6047235	T	C	82.3	PASS	NS=363;DP=2082;AC=3;AN=726;AF=0.0041322;RA=2069;AA=8;SR=1052|1017;SA=2|6;SB=0.25;AB=0.5;ABR=7;ABA=7;RUN=1;SNP;TS
+20	62255	.	T	C	99.0	PASS	NS=361;DP=2204;AC=1;AN=722;AF=0.001385;RA=2195;AA=6;SR=1247|948;SA=6|0;SB=1;AB=0.57143;ABR=8;ABA=6;RUN=1;SNP;TS
+20	62348	.	A	G	99.0	PASS	NS=350;DP=1861;AC=2;AN=700;AF=0.0028571;RA=1845;AA=10;SR=949|896;SA=3|7;SB=0.3;AB=0.23077;ABR=3;ABA=10;RUN=1;SNP;TS
+20	62420	.	A	G	46.8	PASS	NS=364;DP=1821;AC=1;AN=728;AF=0.0013736;RA=1812;AA=3;SR=933|879;SA=0|3;SB=0;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS
+20	62471	.	G	A	43.6	PASS	NS=350;DP=1782;AC=2;AN=700;AF=0.0028571;RA=1772;AA=7;SR=891|881;SA=3|4;SB=0.42857;AB=0.69231;ABR=9;ABA=4;RUN=1;SNP;TS;CpG
+20	62530	.	A	G	1.17	PASS	NS=364;DP=2137;AC=1;AN=728;AF=0.0013736;RA=2129;AA=4;SR=1034|1095;SA=1|3;SB=0.25;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	62545	.	C	G	99.0	PASS	NS=348;DP=2043;AC=5;AN=696;AF=0.0071839;RA=2018;AA=17;SR=907|1111;SA=9|8;SB=0.52941;AB=0.44828;ABR=13;ABA=16;RUN=1;SNP;TV
+20	62553	.	T	C	0.193	PASS	NS=345;DP=2009;AC=2;AN=690;AF=0.0028986;RA=1986;AA=5;SR=869|1117;SA=3|2;SB=0.6;AB=0.76923;ABR=10;ABA=3;RUN=2;SNP;TS
+20	62673	.	G	T	0.556	PASS	NS=359;DP=2225;AC=1;AN=718;AF=0.0013928;RA=2218;AA=5;SR=1217|1001;SA=2|3;SB=0.4;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	62727	.	C	T	8.51	PASS	NS=347;DP=1801;AC=1;AN=694;AF=0.0014409;RA=1794;AA=2;SR=906|888;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	62731	rs34147676	C	A	99.0	PASS	NS=345;DP=1727;AC=22;AN=690;AF=0.031884;RA=1666;AA=55;SR=840|826;SA=26|29;SB=0.47273;AB=0.53061;ABR=52;ABA=46;RUN=2;SNP;TV
+20	62739	.	T	C	7.0	PASS	NS=342;DP=1646;AC=1;AN=684;AF=0.001462;RA=1623;AA=7;SR=812|811;SA=5|2;SB=0.71429;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	62770	.	G	C	3.33	PASS	NS=324;DP=1429;AC=1;AN=648;AF=0.0015432;RA=1422;AA=3;SR=655|767;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	62783	.	A	G	17.3	PASS	NS=328;DP=1471;AC=1;AN=656;AF=0.0015244;RA=1455;AA=8;SR=665|790;SA=4|4;SB=0.5;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TS
+20	62881	.	G	T	0.253	PASS	NS=345;DP=1772;AC=1;AN=690;AF=0.0014493;RA=1761;AA=7;SR=910|851;SA=3|4;SB=0.42857;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	62946	.	T	A	83.9	PASS	NS=349;DP=1880;AC=1;AN=698;AF=0.0014327;RA=1868;AA=5;SR=787|1081;SA=3|2;SB=0.6;AB=0.58333;ABR=7;ABA=5;RUN=2;SNP;TV
+20	62997	.	A	T	5.74	PASS	NS=364;DP=2195;AC=1;AN=728;AF=0.0013736;RA=2190;AA=2;SR=1042|1148;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	63054	.	A	G	48.5	PASS	NS=364;DP=2097;AC=3;AN=728;AF=0.0041209;RA=2082;AA=8;SR=1090|992;SA=5|3;SB=0.625;AB=0.52941;ABR=9;ABA=8;RUN=2;SNP;TS
+20	63055	.	A	G	0.234	PASS	NS=362;DP=2088;AC=1;AN=724;AF=0.0013812;RA=2078;AA=4;SR=1096|982;SA=2|2;SB=0.5;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	63063	.	T	C	0.0841	PASS	NS=363;DP=2065;AC=1;AN=726;AF=0.0013774;RA=2059;AA=2;SR=1083|976;SA=1|1;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	63141	.	T	C	2.61	PASS	NS=360;DP=1900;AC=1;AN=720;AF=0.0013889;RA=1891;AA=2;SR=1041|850;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	63197	.	T	A	0.305	PASS	NS=364;DP=2047;AC=1;AN=728;AF=0.0013736;RA=2037;AA=5;SR=1067|970;SA=1|4;SB=0.2;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TV
+20	63231	rs6076506	T	G	99.0	PASS	NS=360;DP=2025;AC=76;AN=720;AF=0.10556;RA=1828;AA=186;SR=914|914;SA=102|84;SB=0.54839;AB=0.52581;ABR=163;ABA=145;RUN=1;SNP;TV
+20	63244	rs6139074	A	C	99.0	PASS	NS=364;DP=1991;AC=84;AN=728;AF=0.11538;RA=1701;AA=284;SR=871|830;SA=132|152;SB=0.46479;AB=0.46951;ABR=154;ABA=174;RUN=2;SNP;TV
+20	63245	.	C	A	4.67	PASS	NS=364;DP=2000;AC=1;AN=728;AF=0.0013736;RA=1990;AA=6;SR=1010|980;SA=3|3;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TV
+20	63351	.	A	G	30.7	PASS	NS=369;DP=2363;AC=1;AN=738;AF=0.001355;RA=2354;AA=5;SR=1414|940;SA=4|1;SB=0.8;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TS
+20	63360	.	C	T	38.4	PASS	NS=367;DP=2348;AC=2;AN=734;AF=0.0027248;RA=2334;AA=4;SR=1363|971;SA=0|4;SB=0;AB=0.63636;ABR=7;ABA=4;RUN=1;SNP;TS
+20	63426	.	G	T	99.0	PASS	NS=369;DP=2178;AC=5;AN=738;AF=0.0067751;RA=2146;AA=17;SR=1263|883;SA=8|9;SB=0.47059;AB=0.69231;ABR=27;ABA=12;RUN=1;SNP;TV
+20	63452	.	C	G	99.0	PASS	NS=369;DP=2242;AC=22;AN=738;AF=0.02981;RA=2169;AA=68;SR=1220|949;SA=40|28;SB=0.58824;AB=0.47321;ABR=53;ABA=59;RUN=1;SNP;TV
+20	63466	.	A	G	0.305	PASS	NS=369;DP=2343;AC=1;AN=738;AF=0.001355;RA=2334;AA=3;SR=1290|1044;SA=1|2;SB=0.33333;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	63521	.	G	A	33.5	PASS	NS=370;DP=2387;AC=1;AN=740;AF=0.0013514;RA=2376;AA=3;SR=1217|1159;SA=2|1;SB=0.66667;AB=0.33333;ABR=2;ABA=3;RUN=1;SNP;TS
+20	63680	.	A	G	0.841	PASS	NS=371;DP=2758;AC=1;AN=742;AF=0.0013477;RA=2741;AA=5;SR=1422|1319;SA=3|2;SB=0.6;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS;CpG
+20	63733	.	C	T	99.0	PASS	NS=366;DP=2571;AC=58;AN=732;AF=0.079235;RA=2363;AA=200;SR=1311|1052;SA=101|99;SB=0.505;AB=0.50291;ABR=173;ABA=171;RUN=1;SNP;TS;CpG
+20	63746	.	C	T	0.0651	PASS	NS=369;DP=2564;AC=1;AN=738;AF=0.001355;RA=2552;AA=3;SR=1391|1161;SA=2|1;SB=0.66667;AB=0.84615;ABR=11;ABA=2;RUN=1;SNP;TS
+20	63799	rs1418258	C	T	99.0	PASS	NS=367;DP=2322;AC=331;AN=734;AF=0.45095;RA=1274;AA=1026;SR=610|664;SA=489|537;SB=0.47661;AB=0.53157;ABR=564;ABA=494;RUN=3;SNP;TS
+20	63808	.	G	C	99.0	PASS	NS=368;DP=2352;AC=61;AN=736;AF=0.08288;RA=2168;AA=171;SR=1043|1125;SA=80|91;SB=0.46784;AB=0.56869;ABR=178;ABA=134;RUN=1;SNP;TV
+20	63967	.	A	G	99.0	PASS	NS=370;DP=2363;AC=21;AN=740;AF=0.028378;RA=2276;AA=68;SR=911|1365;SA=26|42;SB=0.38235;AB=0.48837;ABR=63;ABA=66;RUN=1;SNP;TS
+20	63983	.	C	T	0.569	PASS	NS=371;DP=2349;AC=1;AN=742;AF=0.0013477;RA=2334;AA=3;SR=892|1442;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	64016	.	G	A	32.3	PASS	NS=370;DP=2259;AC=1;AN=740;AF=0.0013514;RA=2231;AA=15;SR=854|1377;SA=1|14;SB=0.066667;AB=0.5;ABR=3;ABA=3;RUN=2;SNP;TS
+20	64062	.	G	A	62.0	PASS	NS=370;DP=2274;AC=1;AN=740;AF=0.0013514;RA=2264;AA=6;SR=953|1311;SA=3|3;SB=0.5;AB=0.14286;ABR=1;ABA=6;RUN=3;SNP;TS
+20	64150	rs7274499	C	A	99.0	PASS	NS=368;DP=2268;AC=38;AN=736;AF=0.05163;RA=2160;AA=103;SR=881|1279;SA=41|62;SB=0.39806;AB=0.545;ABR=109;ABA=90;RUN=1;SNP;TV
+20	64175	.	A	G	97.6	PASS	NS=369;DP=2213;AC=1;AN=738;AF=0.001355;RA=2192;AA=10;SR=838|1354;SA=3|7;SB=0.3;AB=0.22222;ABR=2;ABA=7;RUN=3;SNP;TS
+20	64186	.	C	G	99.0	PASS	NS=369;DP=2166;AC=4;AN=738;AF=0.0054201;RA=2111;AA=20;SR=858|1253;SA=9|11;SB=0.45;AB=0.5;ABR=12;ABA=12;RUN=1;SNP;TV
+20	64539	.	A	T	0.0711	PASS	NS=352;DP=1674;AC=1;AN=704;AF=0.0014205;RA=1667;AA=4;SR=856|811;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=5;SNP;TV
+20	64560	.	A	G	0.0799	PASS	NS=358;DP=1831;AC=1;AN=716;AF=0.0013966;RA=1824;AA=4;SR=1057|767;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	64568	.	A	C	1.98	PASS	NS=355;DP=1856;AC=1;AN=710;AF=0.0014085;RA=1842;AA=7;SR=1124|718;SA=5|2;SB=0.71429;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	64587	.	A	G	1.36	PASS	NS=357;DP=1971;AC=1;AN=714;AF=0.0014006;RA=1963;AA=3;SR=1234|729;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	64597	.	T	C	0.152	PASS	NS=359;DP=1981;AC=1;AN=718;AF=0.0013928;RA=1974;AA=3;SR=1238|736;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	64618	.	G	A	0.794	PASS	NS=361;DP=2018;AC=1;AN=722;AF=0.001385;RA=2011;AA=3;SR=1263|748;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=4;SNP;TS
+20	64624	.	T	C	5.08	PASS	NS=364;DP=2000;AC=1;AN=728;AF=0.0013736;RA=1994;AA=3;SR=1238|756;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	64625	.	A	G	99.0	PASS	NS=363;DP=1995;AC=1;AN=726;AF=0.0013774;RA=1980;AA=7;SR=1229|751;SA=6|1;SB=0.85714;AB=0.5;ABR=5;ABA=5;RUN=1;SNP;TS
+20	64647	.	T	C	0.188	PASS	NS=362;DP=1911;AC=1;AN=724;AF=0.0013812;RA=1899;AA=5;SR=1157|742;SA=3|2;SB=0.6;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	64656	.	C	T	2.15	PASS	NS=368;DP=1875;AC=1;AN=736;AF=0.0013587;RA=1866;AA=3;SR=1113|753;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	64672	.	T	C	48.3	PASS	NS=365;DP=1877;AC=1;AN=730;AF=0.0013699;RA=1869;AA=5;SR=1097|772;SA=3|2;SB=0.6;AB=0.375;ABR=3;ABA=5;RUN=1;SNP;TS
+20	64771	.	A	G	0.563	PASS	NS=365;DP=2023;AC=1;AN=730;AF=0.0013699;RA=2017;AA=2;SR=1315|702;SA=1|1;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TS
+20	64898	.	G	A	49.7	PASS	NS=371;DP=2342;AC=1;AN=742;AF=0.0013477;RA=2329;AA=7;SR=1249|1080;SA=3|4;SB=0.42857;AB=0.14286;ABR=1;ABA=6;RUN=1;SNP;TS
+20	64913	.	G	T	0.846	PASS	NS=370;DP=2344;AC=1;AN=740;AF=0.0013514;RA=2333;AA=5;SR=1234|1099;SA=1|4;SB=0.2;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TV
+20	65122	.	T	C	1.23	PASS	NS=368;DP=2280;AC=1;AN=736;AF=0.0013587;RA=2265;AA=3;SR=976|1289;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	65173	.	C	G	12.2	PASS	NS=370;DP=2118;AC=1;AN=740;AF=0.0013514;RA=2104;AA=4;SR=947|1157;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	65240	.	G	A	89.4	PASS	NS=364;DP=2106;AC=2;AN=728;AF=0.0027473;RA=2087;AA=8;SR=941|1146;SA=0|8;SB=0;AB=0.25;ABR=2;ABA=6;RUN=1;SNP;TS
+20	65241	.	T	C	0.371	PASS	NS=364;DP=2101;AC=1;AN=728;AF=0.0013736;RA=2087;AA=8;SR=934|1153;SA=7|1;SB=0.875;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	65288	rs13043000	G	T	99.0	PASS	NS=364;DP=2003;AC=21;AN=728;AF=0.028846;RA=1924;AA=76;SR=915|1009;SA=29|47;SB=0.38158;AB=0.4963;ABR=67;ABA=68;RUN=1;SNP;TV
+20	65317	.	A	C	0.0806	PASS	NS=365;DP=1967;AC=1;AN=730;AF=0.0013699;RA=1957;AA=4;SR=954|1003;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	65335	.	T	G	99.0	PASS	NS=363;DP=1773;AC=12;AN=726;AF=0.016529;RA=1744;AA=22;SR=831|913;SA=11|11;SB=0.5;AB=0.46875;ABR=15;ABA=17;RUN=1;SNP;TV
+20	65338	.	A	T	0.813	PASS	NS=362;DP=1726;AC=1;AN=724;AF=0.0013812;RA=1715;AA=3;SR=799|916;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	65562	.	A	G	6.8	PASS	NS=325;DP=1375;AC=2;AN=650;AF=0.0030769;RA=1343;AA=4;SR=759|584;SA=2|2;SB=0.5;AB=0.7;ABR=7;ABA=3;RUN=1;SNP;TS
+20	65578	.	T	C	3.24	PASS	NS=327;DP=1379;AC=1;AN=654;AF=0.0015291;RA=1375;AA=3;SR=790|585;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	65632	.	C	T	40.9	PASS	NS=366;DP=1714;AC=1;AN=732;AF=0.0013661;RA=1703;AA=5;SR=918|785;SA=3|2;SB=0.6;AB=0.2;ABR=1;ABA=4;RUN=1;SNP;TS
+20	65850	.	G	A	0.111	PASS	NS=307;DP=1146;AC=1;AN=614;AF=0.0016287;RA=1128;AA=3;SR=696|432;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	65900	rs6053810	G	A	99.0	PASS	NS=325;DP=1412;AC=530;AN=650;AF=0.81538;RA=271;AA=1129;SR=145|126;SA=639|490;SB=0.56599;AB=0.47594;ABR=178;ABA=193;RUN=1;SNP;TS;CpG
+20	65986	.	G	A	8.36	PASS	NS=370;DP=2269;AC=3;AN=740;AF=0.0040541;RA=2255;AA=6;SR=1197|1058;SA=2|4;SB=0.33333;AB=0;ABR=0;ABA=2;RUN=2;SNP;TS
+20	66029	.	T	C	0.101	PASS	NS=339;DP=1544;AC=1;AN=678;AF=0.0014749;RA=1526;AA=7;SR=748|778;SA=6|1;SB=0.85714;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	66060	.	C	T	6.42	PASS	NS=324;DP=1304;AC=1;AN=648;AF=0.0015432;RA=1297;AA=3;SR=613|684;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	66248	.	C	T	12.0	PASS	NS=288;DP=1080;AC=1;AN=576;AF=0.0017361;RA=1074;AA=2;SR=440|634;SA=2|0;SB=1;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	66370	rs6054257	G	A	99.0	PASS	NS=262;DP=824;AC=404;AN=524;AF=0.77099;RA=185;AA=629;SR=79|106;SA=267|362;SB=0.42448;AB=0.55801;ABR=101;ABA=79;RUN=1;SNP;TS
+20	66388	.	C	T	0.809	PASS	NS=269;DP=809;AC=1;AN=538;AF=0.0018587;RA=798;AA=3;SR=351|447;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	66620	.	C	T	2.19	PASS	NS=338;DP=1326;AC=1;AN=676;AF=0.0014793;RA=1319;AA=3;SR=634|685;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=4;SNP;TS
+20	66705	.	C	T	4.94	PASS	NS=292;DP=835;AC=8;AN=584;AF=0.013699;RA=819;AA=10;SR=483|336;SA=3|7;SB=0.3;AB=0.5;ABR=6;ABA=6;RUN=1;SNP;TS
+20	66890	.	G	T	6.54	PASS	NS=313;DP=1102;AC=1;AN=626;AF=0.0015974;RA=1097;AA=4;SR=670|427;SA=3|1;SB=0.75;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	67080	.	A	G	0.371	PASS	NS=355;DP=1745;AC=1;AN=710;AF=0.0014085;RA=1732;AA=4;SR=907|825;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	67421	.	A	C	0.0555	PASS	NS=363;DP=1999;AC=1;AN=726;AF=0.0013774;RA=1990;AA=6;SR=945|1045;SA=4|2;SB=0.66667;AB=0.5;ABR=1;ABA=1;RUN=1;SNP;TV
+20	67461	.	A	G	99.0	PASS	NS=357;DP=1894;AC=4;AN=714;AF=0.0056022;RA=1872;AA=14;SR=841|1031;SA=8|6;SB=0.57143;AB=0.5;ABR=13;ABA=13;RUN=2;SNP;TS;CpG
+20	67563	.	A	G	3.64	PASS	NS=360;DP=1912;AC=1;AN=720;AF=0.0013889;RA=1904;AA=4;SR=1033|871;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TS
+20	67572	.	A	T	0.0602	PASS	NS=363;DP=1887;AC=1;AN=726;AF=0.0013774;RA=1871;AA=6;SR=1028|843;SA=1|5;SB=0.16667;AB=0.5;ABR=1;ABA=1;RUN=2;SNP;TV
+20	67573	.	C	T	4.67	PASS	NS=364;DP=1888;AC=1;AN=728;AF=0.0013736;RA=1878;AA=6;SR=1028|850;SA=3|3;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	67641	.	C	T	99.0	PASS	NS=364;DP=1910;AC=23;AN=728;AF=0.031593;RA=1837;AA=67;SR=897|940;SA=35|32;SB=0.52239;AB=0.52679;ABR=59;ABA=53;RUN=1;SNP;TS
+20	67644	.	T	C	40.4	PASS	NS=365;DP=1899;AC=2;AN=730;AF=0.0027397;RA=1887;AA=9;SR=933|954;SA=4|5;SB=0.44444;AB=0.44444;ABR=4;ABA=5;RUN=1;SNP;TS;CpG
+20	67646	.	G	A	3.98	PASS	NS=365;DP=1897;AC=1;AN=730;AF=0.0013699;RA=1877;AA=6;SR=923|954;SA=2|4;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	67752	.	T	A	0.292	PASS	NS=367;DP=2181;AC=2;AN=734;AF=0.0027248;RA=2163;AA=6;SR=1201|962;SA=3|3;SB=0.5;AB=0.82353;ABR=14;ABA=3;RUN=2;SNP;TV
+20	67760	.	C	T	67.6	PASS	NS=367;DP=2169;AC=1;AN=734;AF=0.0013624;RA=2152;AA=5;SR=1181|971;SA=2|3;SB=0.4;AB=0.33333;ABR=2;ABA=4;RUN=1;SNP;TS;CpG
+20	67765	.	C	T	99.0	PASS	NS=369;DP=2200;AC=3;AN=738;AF=0.004065;RA=2178;AA=11;SR=1201|977;SA=6|5;SB=0.54545;AB=0.42857;ABR=6;ABA=8;RUN=1;SNP;TS;CpG
+20	67831	.	C	T	0.781	PASS	NS=371;DP=2294;AC=1;AN=742;AF=0.0013477;RA=2281;AA=5;SR=1237|1044;SA=2|3;SB=0.4;AB=0;ABR=0;ABA=2;RUN=4;SNP;TS
+20	67949	.	G	T	10.4	PASS	NS=366;DP=2315;AC=1;AN=732;AF=0.0013661;RA=2282;AA=12;SR=1321|961;SA=2|10;SB=0.16667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	67976	.	T	A	0.679	PASS	NS=369;DP=2408;AC=1;AN=738;AF=0.001355;RA=2397;AA=6;SR=1299|1098;SA=2|4;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	68015	.	C	T	0.113	PASS	NS=369;DP=2466;AC=1;AN=738;AF=0.001355;RA=2453;AA=5;SR=1313|1140;SA=3|2;SB=0.6;AB=0.875;ABR=14;ABA=2;RUN=2;SNP;TS
+20	68055	.	A	G	0.102	PASS	NS=370;DP=2540;AC=1;AN=740;AF=0.0013514;RA=2522;AA=5;SR=1296|1226;SA=4|1;SB=0.8;AB=0.86667;ABR=13;ABA=2;RUN=1;SNP;TS
+20	68075	.	T	C	0.0657	PASS	NS=370;DP=2582;AC=1;AN=740;AF=0.0013514;RA=2562;AA=8;SR=1291|1271;SA=5|3;SB=0.625;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	68123	.	C	A	0.0592	PASS	NS=369;DP=2705;AC=1;AN=738;AF=0.001355;RA=2685;AA=13;SR=1300|1385;SA=11|2;SB=0.84615;AB=0.8;ABR=4;ABA=1;RUN=1;SNP;TV
+20	68182	.	A	T	99.0	PASS	NS=368;DP=2675;AC=2;AN=736;AF=0.0027174;RA=2653;AA=10;SR=1458|1195;SA=6|4;SB=0.6;AB=0.2;ABR=2;ABA=8;RUN=2;SNP;TV
+20	68190	.	T	C	0.109	PASS	NS=368;DP=2678;AC=1;AN=736;AF=0.0013587;RA=2661;AA=5;SR=1481|1180;SA=3|2;SB=0.6;AB=0.83333;ABR=10;ABA=2;RUN=3;SNP;TS
+20	68205	.	A	G	31.9	PASS	NS=369;DP=2686;AC=1;AN=738;AF=0.001355;RA=2672;AA=6;SR=1492|1180;SA=2|4;SB=0.33333;AB=0.57143;ABR=4;ABA=3;RUN=1;SNP;TS
+20	68264	rs60878529	T	C	99.0	PASS	NS=369;DP=2558;AC=98;AN=738;AF=0.13279;RA=2173;AA=376;SR=1055|1118;SA=202|174;SB=0.53723;AB=0.48951;ABR=280;ABA=292;RUN=1;SNP;TS
+20	68474	.	A	G	31.0	PASS	NS=370;DP=2532;AC=2;AN=740;AF=0.0027027;RA=2507;AA=14;SR=1171|1336;SA=2|12;SB=0.14286;AB=0.58333;ABR=7;ABA=5;RUN=1;SNP;TS
+20	68505	.	A	G	0.483	PASS	NS=369;DP=2490;AC=1;AN=738;AF=0.001355;RA=2477;AA=3;SR=1140|1337;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	68535	.	G	A	99.0	PASS	NS=369;DP=2573;AC=12;AN=738;AF=0.01626;RA=2503;AA=58;SR=1186|1317;SA=32|26;SB=0.55172;AB=0.50893;ABR=57;ABA=55;RUN=1;SNP;TS
+20	68618	.	G	A	99.0	PASS	NS=368;DP=2561;AC=21;AN=736;AF=0.028533;RA=2451;AA=93;SR=1224|1227;SA=48|45;SB=0.51613;AB=0.45517;ABR=66;ABA=78;RUN=1;SNP;TS
+20	68657	.	C	A	3.85	PASS	NS=370;DP=2602;AC=1;AN=740;AF=0.0013514;RA=2585;AA=9;SR=1214|1371;SA=6|3;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	68660	.	C	A	99.0	PASS	NS=370;DP=2608;AC=2;AN=740;AF=0.0027027;RA=2591;AA=14;SR=1221|1370;SA=8|6;SB=0.57143;AB=0.44;ABR=11;ABA=14;RUN=2;SNP;TV
+20	68664	.	A	C	0.0666	PASS	NS=370;DP=2602;AC=1;AN=740;AF=0.0013514;RA=2571;AA=12;SR=1212|1359;SA=6|6;SB=0.5;AB=0.5;ABR=1;ABA=1;RUN=1;SNP;TV
+20	68667	.	T	G	99.0	PASS	NS=370;DP=2607;AC=2;AN=740;AF=0.0027027;RA=2584;AA=15;SR=1201|1383;SA=5|10;SB=0.33333;AB=0.41176;ABR=7;ABA=10;RUN=2;SNP;TV
+20	68749	rs6086616	T	C	99.0	PASS	NS=368;DP=2323;AC=426;AN=736;AF=0.5788;RA=983;AA=1334;SR=457|526;SA=640|694;SB=0.47976;AB=0.47215;ABR=568;ABA=632;RUN=1;SNP;TS;CpG
+20	68799	.	T	C	1.55	PASS	NS=367;DP=2269;AC=2;AN=734;AF=0.0027248;RA=2213;AA=15;SR=1064|1149;SA=14|1;SB=0.93333;AB=0.66667;ABR=8;ABA=4;RUN=1;SNP;TS
+20	68815	.	C	T	0.275	PASS	NS=367;DP=2245;AC=1;AN=734;AF=0.0013624;RA=2226;AA=3;SR=1051|1175;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	68826	.	A	T	2.17	PASS	NS=370;DP=2244;AC=1;AN=740;AF=0.0013514;RA=2223;AA=5;SR=1043|1180;SA=4|1;SB=0.8;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	68926	.	T	C	0.43	PASS	NS=369;DP=2139;AC=2;AN=738;AF=0.00271;RA=2120;AA=4;SR=904|1216;SA=1|3;SB=0.25;AB=0.61538;ABR=8;ABA=3;RUN=1;SNP;TS
+20	68975	.	C	G	1.62	PASS	NS=367;DP=2121;AC=1;AN=734;AF=0.0013624;RA=2105;AA=4;SR=767|1338;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	68987	.	G	T	2.55	PASS	NS=369;DP=2074;AC=1;AN=738;AF=0.001355;RA=2059;AA=8;SR=732|1327;SA=3|5;SB=0.375;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	69049	.	T	A	0.201	PASS	NS=361;DP=2045;AC=1;AN=722;AF=0.001385;RA=2038;AA=5;SR=936|1102;SA=2|3;SB=0.4;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TV
+20	69066	.	C	G	14.2	PASS	NS=360;DP=2078;AC=3;AN=720;AF=0.0041667;RA=2069;AA=8;SR=1074|995;SA=1|7;SB=0.125;AB=0.45455;ABR=5;ABA=6;RUN=2;SNP;TV
+20	69094	rs6039403	G	A	99.0	PASS	NS=362;DP=2092;AC=318;AN=724;AF=0.43923;RA=1227;AA=857;SR=691|536;SA=451|406;SB=0.52625;AB=0.49681;ABR=389;ABA=392;RUN=1;SNP;TS
+20	69130	.	C	A	11.5	PASS	NS=365;DP=2014;AC=1;AN=730;AF=0.0013699;RA=2007;AA=3;SR=1082|925;SA=2|1;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	69145	.	A	G	0.195	PASS	NS=367;DP=1999;AC=2;AN=734;AF=0.0027248;RA=1991;AA=5;SR=1033|958;SA=3|2;SB=0.6;AB=0.7;ABR=7;ABA=3;RUN=2;SNP;TS;CpG
+20	69262	.	A	T	1.7	PASS	NS=365;DP=2053;AC=1;AN=730;AF=0.0013699;RA=2047;AA=3;SR=1145|902;SA=2|1;SB=0.66667;AB=0;ABR=0;ABA=2;RUN=3;SNP;TV
+20	69305	.	T	C	0.123	PASS	NS=367;DP=1964;AC=1;AN=734;AF=0.0013624;RA=1956;AA=3;SR=1101|855;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	69355	.	C	T	4.52	PASS	NS=367;DP=2009;AC=1;AN=734;AF=0.0013624;RA=2000;AA=3;SR=970|1030;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS;CpG
+20	69376	.	G	A	0.665	PASS	NS=367;DP=2085;AC=1;AN=734;AF=0.0013624;RA=2077;AA=3;SR=1003|1074;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TS
+20	69408	rs17685809	C	T	99.0	PASS	NS=366;DP=2154;AC=38;AN=732;AF=0.051913;RA=2013;AA=133;SR=894|1119;SA=60|73;SB=0.45113;AB=0.51685;ABR=138;ABA=128;RUN=1;SNP;TS;CpG
+20	69486	.	C	G	0.0652	PASS	NS=362;DP=1836;AC=1;AN=724;AF=0.0013812;RA=1820;AA=2;SR=1092|728;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	69641	.	C	A	0.0576	PASS	NS=367;DP=2135;AC=2;AN=734;AF=0.0027248;RA=2121;AA=8;SR=1038|1083;SA=6|2;SB=0.75;AB=0.8125;ABR=13;ABA=3;RUN=3;SNP;TV
+20	69656	.	T	C	0.253	PASS	NS=366;DP=2096;AC=1;AN=732;AF=0.0013661;RA=2090;AA=2;SR=1030|1060;SA=0|2;SB=0;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	69668	.	T	C	40.6	PASS	NS=365;DP=2114;AC=1;AN=730;AF=0.0013699;RA=2104;AA=6;SR=1026|1078;SA=4|2;SB=0.66667;AB=0.5;ABR=4;ABA=4;RUN=1;SNP;TS
+20	69707	.	T	A	0.375	PASS	NS=366;DP=2148;AC=1;AN=732;AF=0.0013661;RA=2143;AA=2;SR=1011|1132;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TV
+20	69723	.	T	A	0.883	PASS	NS=363;DP=2037;AC=1;AN=726;AF=0.0013774;RA=2026;AA=2;SR=945|1081;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	69752	.	A	C	1.31	PASS	NS=362;DP=1984;AC=1;AN=724;AF=0.0013812;RA=1977;AA=2;SR=932|1045;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	69821	.	A	T	0.479	PASS	NS=364;DP=1967;AC=1;AN=728;AF=0.0013736;RA=1960;AA=3;SR=958|1002;SA=3|0;SB=1;AB=0.75;ABR=6;ABA=2;RUN=4;SNP;TV
+20	69835	.	A	G	0.671	PASS	NS=363;DP=1953;AC=1;AN=726;AF=0.0013774;RA=1943;AA=5;SR=936|1007;SA=3|2;SB=0.6;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	69903	.	T	A	0.0459	PASS	NS=362;DP=1913;AC=1;AN=724;AF=0.0013812;RA=1904;AA=5;SR=821|1083;SA=3|2;SB=0.6;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	69951	.	A	T	0.159	PASS	NS=354;DP=1819;AC=2;AN=708;AF=0.0028249;RA=1810;AA=8;SR=774|1036;SA=6|2;SB=0.75;AB=0.78571;ABR=11;ABA=3;RUN=4;SNP;TV
+20	69966	.	T	C	0.661	PASS	NS=351;DP=1768;AC=2;AN=702;AF=0.002849;RA=1762;AA=4;SR=773|989;SA=2|2;SB=0.5;AB=0.76923;ABR=10;ABA=3;RUN=1;SNP;TS;CpG
+20	70470	.	A	G	4.57	PASS	NS=359;DP=1690;AC=1;AN=718;AF=0.0013928;RA=1681;AA=2;SR=1065|616;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	70490	.	C	T	0.934	PASS	NS=358;DP=1682;AC=5;AN=716;AF=0.0069832;RA=1665;AA=12;SR=962|703;SA=11|1;SB=0.91667;AB=0.2;ABR=1;ABA=4;RUN=5;SNP;TS
+20	70604	.	A	T	0.698	PASS	NS=360;DP=1795;AC=2;AN=720;AF=0.0027778;RA=1776;AA=10;SR=1075|701;SA=9|1;SB=0.9;AB=0.57143;ABR=4;ABA=3;RUN=4;SNP;TV
+20	70611	.	G	A	0.143	PASS	NS=362;DP=1806;AC=1;AN=724;AF=0.0013812;RA=1788;AA=5;SR=1077|711;SA=1|4;SB=0.2;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	70696	.	T	C	1.72	PASS	NS=365;DP=1849;AC=1;AN=730;AF=0.0013699;RA=1839;AA=4;SR=983|856;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	70785	.	A	G	99.0	PASS	NS=368;DP=1990;AC=14;AN=736;AF=0.019022;RA=1938;AA=40;SR=1005|933;SA=20|20;SB=0.5;AB=0.51852;ABR=42;ABA=38;RUN=1;SNP;TS
+20	70804	.	C	T	4.03	PASS	NS=369;DP=2057;AC=1;AN=738;AF=0.001355;RA=2042;AA=5;SR=1069|973;SA=2|3;SB=0.4;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	70917	.	T	C	1.54	PASS	NS=369;DP=2193;AC=1;AN=738;AF=0.001355;RA=2182;AA=2;SR=1110|1072;SA=1|1;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	70920	.	A	G	99.0	PASS	NS=368;DP=2172;AC=13;AN=736;AF=0.017663;RA=2121;AA=45;SR=1084|1037;SA=24|21;SB=0.53333;AB=0.38462;ABR=25;ABA=40;RUN=2;SNP;TS
+20	70980	rs60263736	G	A	99.0	PASS	NS=368;DP=2339;AC=39;AN=736;AF=0.052989;RA=2221;AA=106;SR=1223|998;SA=71|35;SB=0.66981;AB=0.57416;ABR=120;ABA=89;RUN=1;SNP;TS
+20	71013	.	A	C	0.0504	PASS	NS=371;DP=2390;AC=1;AN=742;AF=0.0013477;RA=2371;AA=12;SR=1359|1012;SA=2|10;SB=0.16667;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	71015	.	T	C	0.569	PASS	NS=371;DP=2398;AC=1;AN=742;AF=0.0013477;RA=2390;AA=5;SR=1364|1026;SA=4|1;SB=0.8;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TS
+20	71037	.	T	C	0.223	PASS	NS=369;DP=2289;AC=1;AN=738;AF=0.001355;RA=2279;AA=4;SR=1353|926;SA=3|1;SB=0.75;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	71079	rs6040382	C	T	99.0	PASS	NS=370;DP=2338;AC=60;AN=740;AF=0.081081;RA=2168;AA=166;SR=1421|747;SA=102|64;SB=0.61446;AB=0.53086;ABR=129;ABA=113;RUN=1;SNP;TS
+20	71093	rs6040395	G	A	99.0	PASS	NS=365;DP=2393;AC=93;AN=730;AF=0.1274;RA=2085;AA=299;SR=1382|703;SA=194|105;SB=0.64883;AB=0.5317;ABR=260;ABA=225;RUN=1;SNP;TS
+20	71281	.	G	A	66.6	PASS	NS=369;DP=2496;AC=2;AN=738;AF=0.00271;RA=2481;AA=11;SR=1273|1208;SA=4|7;SB=0.36364;AB=0.66667;ABR=12;ABA=6;RUN=1;SNP;TS;CpG
+20	71290	.	A	G	0.526	PASS	NS=368;DP=2466;AC=1;AN=736;AF=0.0013587;RA=2448;AA=4;SR=1262|1186;SA=1|3;SB=0.25;AB=0.81818;ABR=9;ABA=2;RUN=3;SNP;TS
+20	71454	.	T	C	0.691	PASS	NS=370;DP=2518;AC=1;AN=740;AF=0.0013514;RA=2498;AA=5;SR=1203|1295;SA=2|3;SB=0.4;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	71543	.	A	G	1.37	PASS	NS=369;DP=2378;AC=1;AN=738;AF=0.001355;RA=2369;AA=6;SR=1023|1346;SA=3|3;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=3;SNP;TS;CpG
+20	71549	.	G	T	99.0	PASS	NS=370;DP=2354;AC=49;AN=740;AF=0.066216;RA=2139;AA=210;SR=769|1370;SA=208|2;SB=0.99048;AB=0.68065;ABR=211;ABA=99;RUN=4;SNP;TV
+20	71726	.	C	A	5.19	PASS	NS=363;DP=2309;AC=1;AN=726;AF=0.0013774;RA=2301;AA=3;SR=1162|1139;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	71809	.	G	A	27.3	PASS	NS=354;DP=1947;AC=1;AN=708;AF=0.0014124;RA=1937;AA=3;SR=923|1014;SA=1|2;SB=0.33333;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS
+20	71850	.	T	C	0.131	PASS	NS=358;DP=2062;AC=1;AN=716;AF=0.0013966;RA=2055;AA=2;SR=1053|1002;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	71859	.	G	A	14.4	PASS	NS=355;DP=2030;AC=3;AN=710;AF=0.0042254;RA=2010;AA=7;SR=1055|955;SA=2|5;SB=0.28571;AB=0.5;ABR=4;ABA=4;RUN=1;SNP;TS;CpG
+20	71926	.	T	A	4.2	PASS	NS=336;DP=1791;AC=1;AN=672;AF=0.0014881;RA=1787;AA=2;SR=879|908;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	71929	.	T	A	0.237	PASS	NS=336;DP=1782;AC=1;AN=672;AF=0.0014881;RA=1773;AA=3;SR=875|898;SA=1|2;SB=0.33333;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TV
+20	72002	.	A	C	0.101	PASS	NS=340;DP=1976;AC=1;AN=680;AF=0.0014706;RA=1960;AA=10;SR=1100|860;SA=9|1;SB=0.9;AB=0.75;ABR=3;ABA=1;RUN=1;SNP;TV
+20	72036	.	G	A	99.0	PASS	NS=349;DP=2037;AC=6;AN=698;AF=0.008596;RA=2022;AA=11;SR=1106|916;SA=5|6;SB=0.45455;AB=0.60714;ABR=17;ABA=11;RUN=1;SNP;TS;CpG
+20	72206	.	T	G	1.43	PASS	NS=370;DP=2151;AC=1;AN=740;AF=0.0013514;RA=2144;AA=4;SR=1129|1015;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	72287	.	A	G	0.0526	PASS	NS=369;DP=2216;AC=1;AN=738;AF=0.001355;RA=2210;AA=2;SR=1016|1194;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	72331	.	T	A	0.125	PASS	NS=367;DP=2265;AC=1;AN=734;AF=0.0013624;RA=2246;AA=7;SR=1089|1157;SA=6|1;SB=0.85714;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	72406	.	C	T	0.0949	PASS	NS=366;DP=2205;AC=1;AN=732;AF=0.0013661;RA=2191;AA=2;SR=1075|1116;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	72570	.	C	A	2.37	PASS	NS=365;DP=1829;AC=1;AN=730;AF=0.0013699;RA=1810;AA=13;SR=969|841;SA=6|7;SB=0.46154;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	72604	.	A	G	2.22	PASS	NS=363;DP=2084;AC=1;AN=726;AF=0.0013774;RA=2079;AA=3;SR=1043|1036;SA=2|1;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	72632	rs60387861	G	T	99.0	PASS	NS=367;DP=2170;AC=21;AN=734;AF=0.02861;RA=2099;AA=67;SR=1017|1082;SA=36|31;SB=0.53731;AB=0.54167;ABR=65;ABA=55;RUN=2;SNP;TV
+20	72665	.	G	A	99.0	PASS	NS=365;DP=2216;AC=3;AN=730;AF=0.0041096;RA=2198;AA=11;SR=1006|1192;SA=3|8;SB=0.27273;AB=0.5;ABR=10;ABA=10;RUN=2;SNP;TS
+20	72719	rs11698144	C	T	99.0	PASS	NS=360;DP=2045;AC=12;AN=720;AF=0.016667;RA=2005;AA=33;SR=968|1037;SA=19|14;SB=0.57576;AB=0.52174;ABR=36;ABA=32;RUN=3;SNP;TS
+20	72747	.	T	A	0.163	PASS	NS=368;DP=2073;AC=1;AN=736;AF=0.0013587;RA=2062;AA=4;SR=1092|970;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TV
+20	72771	.	A	T	1.48	PASS	NS=371;DP=2071;AC=1;AN=742;AF=0.0013477;RA=2062;AA=3;SR=1149|913;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	72772	.	A	G	0.311	PASS	NS=371;DP=2065;AC=2;AN=742;AF=0.0026954;RA=2051;AA=5;SR=1145|906;SA=3|2;SB=0.6;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TS
+20	72815	.	T	C	25.8	PASS	NS=367;DP=2079;AC=2;AN=734;AF=0.0027248;RA=2062;AA=8;SR=1133|929;SA=4|4;SB=0.5;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TS
+20	72820	.	C	A	3.07	PASS	NS=366;DP=2061;AC=1;AN=732;AF=0.0013661;RA=2048;AA=5;SR=1097|951;SA=4|1;SB=0.8;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	72882	.	T	C	4.28	PASS	NS=369;DP=2031;AC=1;AN=738;AF=0.001355;RA=2013;AA=5;SR=914|1099;SA=4|1;SB=0.8;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	72887	.	A	G	2.42	PASS	NS=367;DP=2020;AC=1;AN=734;AF=0.0013624;RA=2004;AA=6;SR=906|1098;SA=4|2;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=3;SNP;TS
+20	72890	.	A	G	1.25	PASS	NS=366;DP=2018;AC=1;AN=732;AF=0.0013661;RA=2006;AA=3;SR=910|1096;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	72892	rs16987437	G	A	99.0	PASS	NS=365;DP=2011;AC=36;AN=730;AF=0.049315;RA=1913;AA=88;SR=863|1050;SA=43|45;SB=0.48864;AB=0.56647;ABR=98;ABA=73;RUN=5;SNP;TS
+20	72894	.	T	C	77.5	PASS	NS=365;DP=2035;AC=1;AN=730;AF=0.0013699;RA=2010;AA=11;SR=921|1089;SA=4|7;SB=0.36364;AB=0.14286;ABR=1;ABA=6;RUN=1;SNP;TS;CpG
+20	73014	.	C	G	12.4	PASS	NS=368;DP=2017;AC=1;AN=736;AF=0.0013587;RA=1989;AA=3;SR=858|1131;SA=2|1;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	73136	.	T	A	5.76	PASS	NS=282;DP=784;AC=3;AN=564;AF=0.0053191;RA=758;AA=7;SR=402|356;SA=5|2;SB=0.71429;AB=0;ABR=0;ABA=2;RUN=1;SNP;TV
+20	73268	.	G	T	0.0695	PASS	NS=346;DP=1716;AC=1;AN=692;AF=0.0014451;RA=1710;AA=4;SR=1061|649;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	73369	.	C	T	5.68	PASS	NS=365;DP=1955;AC=1;AN=730;AF=0.0013699;RA=1943;AA=6;SR=800|1143;SA=3|3;SB=0.5;AB=0.7;ABR=7;ABA=3;RUN=4;SNP;TS
+20	73416	.	C	T	0.0527	PASS	NS=362;DP=1908;AC=1;AN=724;AF=0.0013812;RA=1894;AA=3;SR=937|957;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	73431	.	C	G	1.76	PASS	NS=363;DP=1863;AC=1;AN=726;AF=0.0013774;RA=1856;AA=3;SR=950|906;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	73719	.	C	A	99.0	PASS	NS=277;DP=997;AC=18;AN=554;AF=0.032491;RA=964;AA=30;SR=443|521;SA=18|12;SB=0.6;AB=0.40909;ABR=9;ABA=13;RUN=1;SNP;TV
+20	73767	.	A	G	3.17	PASS	NS=284;DP=893;AC=1;AN=568;AF=0.0017606;RA=883;AA=3;SR=402|481;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	73852	.	T	G	99.0	PASS	NS=335;DP=1416;AC=7;AN=670;AF=0.010448;RA=1377;AA=28;SR=855|522;SA=8|20;SB=0.28571;AB=0.375;ABR=9;ABA=15;RUN=2;SNP;TV
+20	73858	.	C	T	96.7	PASS	NS=341;DP=1497;AC=9;AN=682;AF=0.013196;RA=1483;AA=13;SR=916|567;SA=8|5;SB=0.61538;AB=0.64516;ABR=20;ABA=11;RUN=1;SNP;TS
+20	73888	.	G	A	0.0568	PASS	NS=351;DP=1692;AC=1;AN=702;AF=0.0014245;RA=1679;AA=4;SR=945|734;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	73957	.	G	A	13.1	PASS	NS=368;DP=2167;AC=1;AN=736;AF=0.0013587;RA=2158;AA=3;SR=1176|982;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	74009	.	C	T	3.44	PASS	NS=369;DP=2230;AC=1;AN=738;AF=0.001355;RA=2224;AA=2;SR=1283|941;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	74053	.	A	T	6.52	PASS	NS=366;DP=2231;AC=1;AN=732;AF=0.0013661;RA=2219;AA=4;SR=1326|893;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	74073	.	T	A	0.0672	PASS	NS=365;DP=2246;AC=1;AN=730;AF=0.0013699;RA=2237;AA=2;SR=1302|935;SA=2|0;SB=1;AB=0.4;ABR=2;ABA=2;RUN=1;SNP;TV
+20	74142	.	A	G	0.849	PASS	NS=370;DP=2293;AC=1;AN=740;AF=0.0013514;RA=2273;AA=7;SR=1239|1034;SA=2|5;SB=0.28571;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TS
+20	74232	.	T	C	0.106	PASS	NS=366;DP=2368;AC=1;AN=732;AF=0.0013661;RA=2348;AA=6;SR=1206|1142;SA=5|1;SB=0.83333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	74247	.	T	C	99.0	PASS	NS=365;DP=2372;AC=1;AN=730;AF=0.0013699;RA=2353;AA=9;SR=1194|1159;SA=2|7;SB=0.22222;AB=0.3;ABR=3;ABA=7;RUN=1;SNP;TS;CpG
+20	74281	.	C	T	3.59	PASS	NS=366;DP=2430;AC=2;AN=732;AF=0.0027322;RA=2418;AA=5;SR=1176|1242;SA=1|4;SB=0.2;AB=0.33333;ABR=2;ABA=4;RUN=2;SNP;TS
+20	74297	.	A	T	0.214	PASS	NS=367;DP=2402;AC=1;AN=734;AF=0.0013624;RA=2379;AA=5;SR=1148|1231;SA=1|4;SB=0.2;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	74347	rs6135141	G	A	99.0	PASS	NS=371;DP=2504;AC=76;AN=742;AF=0.10243;RA=2237;AA=253;SR=1152|1085;SA=127|126;SB=0.50198;AB=0.52459;ABR=224;ABA=203;RUN=1;SNP;TS
+20	74355	.	G	T	0.613	PASS	NS=368;DP=2548;AC=1;AN=736;AF=0.0013587;RA=2530;AA=9;SR=1322|1208;SA=5|4;SB=0.55556;AB=0.8125;ABR=13;ABA=2;RUN=1;SNP;TV
+20	74545	.	T	A	1.96	PASS	NS=361;DP=2030;AC=3;AN=722;AF=0.0041551;RA=2012;AA=12;SR=933|1079;SA=4|8;SB=0.33333;AB=0.55;ABR=11;ABA=9;RUN=1;SNP;TV
+20	74595	.	G	C	0.696	PASS	NS=364;DP=2054;AC=1;AN=728;AF=0.0013736;RA=2046;AA=4;SR=1037|1009;SA=1|3;SB=0.25;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	74617	.	A	G	4.15	PASS	NS=365;DP=2159;AC=1;AN=730;AF=0.0013699;RA=2139;AA=6;SR=1030|1109;SA=5|1;SB=0.83333;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	74651	.	T	G	55.6	PASS	NS=367;DP=2262;AC=3;AN=734;AF=0.0040872;RA=2241;AA=12;SR=985|1256;SA=5|7;SB=0.41667;AB=0.46154;ABR=6;ABA=7;RUN=1;SNP;TV
+20	74747	.	C	T	0.125	PASS	NS=355;DP=2085;AC=2;AN=710;AF=0.0028169;RA=2069;AA=10;SR=1059|1010;SA=9|1;SB=0.9;AB=0.57143;ABR=4;ABA=3;RUN=2;SNP;TS
+20	74776	.	T	C	0.0648	PASS	NS=357;DP=2083;AC=1;AN=714;AF=0.0014006;RA=2066;AA=5;SR=1096|970;SA=2|3;SB=0.4;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	74801	.	T	C	0.234	PASS	NS=361;DP=1925;AC=1;AN=722;AF=0.001385;RA=1921;AA=2;SR=960|961;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	74873	.	T	A	0.0536	PASS	NS=337;DP=1479;AC=2;AN=674;AF=0.0029674;RA=1470;AA=4;SR=610|860;SA=2|2;SB=0.5;AB=0.7;ABR=7;ABA=3;RUN=2;SNP;TV
+20	74885	.	C	A	0.412	PASS	NS=342;DP=1549;AC=1;AN=684;AF=0.001462;RA=1540;AA=4;SR=692|848;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=5;SNP;TV
+20	74995	.	T	A	0.177	PASS	NS=365;DP=2238;AC=1;AN=730;AF=0.0013699;RA=2203;AA=16;SR=1233|970;SA=14|2;SB=0.875;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TV
+20	75003	.	T	A	0.703	PASS	NS=365;DP=2252;AC=1;AN=730;AF=0.0013699;RA=2235;AA=3;SR=1241|994;SA=2|1;SB=0.66667;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	75026	.	G	A	6.27	PASS	NS=361;DP=2078;AC=3;AN=722;AF=0.0041551;RA=2063;AA=9;SR=1109|954;SA=6|3;SB=0.66667;AB=0.6;ABR=6;ABA=4;RUN=1;SNP;TS
+20	75040	.	T	C	2.13	PASS	NS=367;DP=2087;AC=1;AN=734;AF=0.0013624;RA=2076;AA=3;SR=1074|1002;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	75245	.	T	A	3.0	PASS	NS=363;DP=2162;AC=1;AN=726;AF=0.0013774;RA=2150;AA=3;SR=1018|1132;SA=1|2;SB=0.33333;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	75254	rs892665	C	A	99.0	PASS	NS=362;DP=2018;AC=255;AN=724;AF=0.35221;RA=1339;AA=657;SR=615|724;SA=345|312;SB=0.52511;AB=0.52083;ABR=450;ABA=401;RUN=2;SNP;TV
+20	75280	.	A	G	0.0778	PASS	NS=350;DP=1862;AC=1;AN=700;AF=0.0014286;RA=1823;AA=17;SR=786|1037;SA=0|17;SB=0;AB=0.5;ABR=1;ABA=1;RUN=1;SNP;TS
+20	75389	.	C	T	2.19	PASS	NS=361;DP=2144;AC=1;AN=722;AF=0.001385;RA=2136;AA=4;SR=1054|1082;SA=3|1;SB=0.75;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	75514	.	C	T	0.116	PASS	NS=369;DP=2263;AC=1;AN=738;AF=0.001355;RA=2248;AA=7;SR=1190|1058;SA=5|2;SB=0.71429;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TS
+20	75516	.	A	G	99.0	PASS	NS=369;DP=2296;AC=5;AN=738;AF=0.0067751;RA=2273;AA=14;SR=1217|1056;SA=3|11;SB=0.21429;AB=0.42105;ABR=8;ABA=11;RUN=1;SNP;TS
+20	75691	.	C	G	1.39	PASS	NS=370;DP=2164;AC=1;AN=740;AF=0.0013514;RA=2149;AA=6;SR=933|1216;SA=3|3;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	75729	.	C	G	99.0	PASS	NS=368;DP=2200;AC=13;AN=736;AF=0.017663;RA=2156;AA=37;SR=1063|1093;SA=19|18;SB=0.51351;AB=0.50667;ABR=38;ABA=36;RUN=1;SNP;TV
+20	75790	.	G	T	0.37	PASS	NS=366;DP=2147;AC=1;AN=732;AF=0.0013661;RA=2139;AA=5;SR=1124|1015;SA=1|4;SB=0.2;AB=0.6;ABR=3;ABA=2;RUN=4;SNP;TV
+20	75813	.	G	T	45.2	PASS	NS=367;DP=2170;AC=2;AN=734;AF=0.0027248;RA=2155;AA=11;SR=1100|1055;SA=3|8;SB=0.27273;AB=0.22222;ABR=2;ABA=7;RUN=2;SNP;TV
+20	75880	.	G	A	4.19	PASS	NS=369;DP=2153;AC=3;AN=738;AF=0.004065;RA=2139;AA=7;SR=1037|1102;SA=4|3;SB=0.57143;AB=0.5;ABR=5;ABA=5;RUN=3;SNP;TS
+20	75999	.	T	C	99.0	PASS	NS=371;DP=2394;AC=21;AN=742;AF=0.028302;RA=2315;AA=63;SR=1290|1025;SA=41|22;SB=0.65079;AB=0.50794;ABR=64;ABA=61;RUN=1;SNP;TS
+20	76282	.	G	A	2.2	PASS	NS=370;DP=2122;AC=1;AN=740;AF=0.0013514;RA=2113;AA=2;SR=1137|976;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	76316	.	T	G	0.0522	PASS	NS=353;DP=2029;AC=1;AN=706;AF=0.0014164;RA=2019;AA=6;SR=1099|920;SA=2|4;SB=0.33333;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TV
+20	76317	.	A	T	0.0577	PASS	NS=353;DP=2039;AC=1;AN=706;AF=0.0014164;RA=2028;AA=4;SR=1106|922;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=3;SNP;TV
+20	76388	.	G	A	99.0	PASS	NS=371;DP=2615;AC=3;AN=742;AF=0.0040431;RA=2588;AA=14;SR=1183|1405;SA=7|7;SB=0.5;AB=0.54167;ABR=13;ABA=11;RUN=1;SNP;TS;CpG
+20	76407	.	C	T	0.047	PASS	NS=369;DP=2638;AC=1;AN=738;AF=0.001355;RA=2620;AA=7;SR=1141|1479;SA=6|1;SB=0.85714;AB=0.5;ABR=1;ABA=1;RUN=3;SNP;TS
+20	76477	.	G	T	0.0468	PASS	NS=369;DP=2510;AC=1;AN=738;AF=0.001355;RA=2495;AA=8;SR=1108|1387;SA=7|1;SB=0.875;AB=0.83333;ABR=5;ABA=1;RUN=1;SNP;TV
+20	76519	.	T	C	55.2	PASS	NS=367;DP=2405;AC=1;AN=734;AF=0.0013624;RA=2395;AA=6;SR=1135|1260;SA=4|2;SB=0.66667;AB=0.44444;ABR=4;ABA=5;RUN=1;SNP;TS
+20	76526	.	G	A	97.7	PASS	NS=365;DP=2372;AC=1;AN=730;AF=0.0013699;RA=2355;AA=6;SR=1100|1255;SA=2|4;SB=0.33333;AB=0.625;ABR=10;ABA=6;RUN=1;SNP;TS
+20	76559	.	G	A	0.0519	PASS	NS=366;DP=2361;AC=1;AN=732;AF=0.0013661;RA=2351;AA=3;SR=1069|1282;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	76614	.	T	C	0.355	PASS	NS=364;DP=2186;AC=1;AN=728;AF=0.0013736;RA=2180;AA=2;SR=1061|1119;SA=1|1;SB=0.5;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	76631	.	T	A	0.135	PASS	NS=362;DP=2146;AC=1;AN=724;AF=0.0013812;RA=2138;AA=4;SR=1088|1050;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TV
+20	76668	.	T	C	0.299	PASS	NS=370;DP=2308;AC=1;AN=740;AF=0.0013514;RA=2288;AA=7;SR=1196|1092;SA=5|2;SB=0.71429;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	76669	.	T	A	3.27	PASS	NS=370;DP=2325;AC=1;AN=740;AF=0.0013514;RA=2319;AA=3;SR=1215|1104;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	76689	.	T	C	14.1	PASS	NS=369;DP=2386;AC=1;AN=738;AF=0.001355;RA=2371;AA=7;SR=1247|1124;SA=4|3;SB=0.57143;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TS
+20	76796	.	T	C	18.7	PASS	NS=368;DP=2408;AC=3;AN=736;AF=0.0040761;RA=2393;AA=9;SR=1269|1124;SA=6|3;SB=0.66667;AB=0.76667;ABR=23;ABA=7;RUN=1;SNP;TS
+20	76801	.	G	A	1.02	PASS	NS=364;DP=2385;AC=1;AN=728;AF=0.0013736;RA=2372;AA=4;SR=1252|1120;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	76915	.	A	G	99.0	PASS	NS=366;DP=2285;AC=3;AN=732;AF=0.0040984;RA=2256;AA=11;SR=1262|994;SA=8|3;SB=0.72727;AB=0.5;ABR=10;ABA=9;RUN=1;SNP;TS
+20	76920	.	G	A	65.7	PASS	NS=367;DP=2288;AC=2;AN=734;AF=0.0027248;RA=2276;AA=7;SR=1297|979;SA=5|2;SB=0.71429;AB=0.58824;ABR=10;ABA=7;RUN=2;SNP;TS
+20	76934	.	A	G	40.7	PASS	NS=368;DP=2253;AC=2;AN=736;AF=0.0027174;RA=2238;AA=6;SR=1276|962;SA=2|4;SB=0.33333;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TS
+20	76962	rs6111385	T	C	99.0	PASS	NS=369;DP=2127;AC=599;AN=738;AF=0.81165;RA=436;AA=1670;SR=226|210;SA=898|772;SB=0.53772;AB=0.51024;ABR=299;ABA=281;RUN=2;SNP;TS;CpG
+20	77013	rs45528036	C	T	47.1	PASS	NS=370;DP=2371;AC=2;AN=740;AF=0.0027027;RA=2361;AA=5;SR=1049|1312;SA=1|4;SB=0.2;AB=0.57143;ABR=8;ABA=5;RUN=1;SNP;TS;CpG
+20	77025	.	A	G	99.0	PASS	NS=370;DP=2398;AC=4;AN=740;AF=0.0054054;RA=2351;AA=24;SR=1035|1316;SA=5|19;SB=0.20833;AB=0.57143;ABR=24;ABA=18;RUN=1;SNP;TS;CpG
+20	77115	.	A	G	0.997	PASS	NS=371;DP=2355;AC=1;AN=742;AF=0.0013477;RA=2344;AA=4;SR=1291|1053;SA=1|3;SB=0.25;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	77225	.	T	C	0.928	PASS	NS=366;DP=2199;AC=1;AN=732;AF=0.0013661;RA=2192;AA=3;SR=986|1206;SA=2|1;SB=0.66667;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	77264	.	C	T	0.0587	PASS	NS=369;DP=2275;AC=1;AN=738;AF=0.001355;RA=2261;AA=5;SR=1054|1207;SA=3|2;SB=0.6;AB=0.8;ABR=4;ABA=1;RUN=1;SNP;TS
+20	77327	.	G	T	24.8	PASS	NS=367;DP=2294;AC=2;AN=734;AF=0.0027248;RA=2282;AA=10;SR=1172|1110;SA=6|4;SB=0.6;AB=0.6875;ABR=11;ABA=5;RUN=2;SNP;TV
+20	77393	.	G	A	32.7	PASS	NS=367;DP=2297;AC=1;AN=734;AF=0.0013624;RA=2277;AA=11;SR=1261|1016;SA=6|5;SB=0.54545;AB=0.5;ABR=4;ABA=4;RUN=3;SNP;TS;CpG
+20	77484	.	A	T	0.241	PASS	NS=369;DP=2290;AC=1;AN=738;AF=0.001355;RA=2283;AA=5;SR=1203|1080;SA=4|1;SB=0.8;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	77499	.	G	T	0.058	PASS	NS=369;DP=2269;AC=1;AN=738;AF=0.001355;RA=2260;AA=4;SR=1216|1044;SA=1|3;SB=0.25;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	77655	.	T	C	0.0462	PASS	NS=371;DP=2542;AC=1;AN=742;AF=0.0013477;RA=2533;AA=3;SR=1188|1345;SA=2|1;SB=0.66667;AB=0.83333;ABR=10;ABA=2;RUN=2;SNP;TS;CpG
+20	77816	.	G	A	99.0	PASS	NS=369;DP=2224;AC=16;AN=738;AF=0.02168;RA=2161;AA=45;SR=1004|1157;SA=21|24;SB=0.46667;AB=0.53571;ABR=45;ABA=37;RUN=1;SNP;TS
+20	77870	.	A	G	0.0585	PASS	NS=368;DP=2214;AC=1;AN=736;AF=0.0013587;RA=2176;AA=15;SR=836|1340;SA=3|12;SB=0.2;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TS
+20	77871	.	C	T	28.8	PASS	NS=368;DP=2215;AC=4;AN=736;AF=0.0054348;RA=2200;AA=11;SR=831|1369;SA=6|5;SB=0.54545;AB=0.75;ABR=9;ABA=3;RUN=1;SNP;TS;CpG
+20	77884	.	T	C	2.39	PASS	NS=369;DP=2325;AC=1;AN=738;AF=0.001355;RA=2308;AA=4;SR=832|1476;SA=3|1;SB=0.75;AB=0;ABR=0;ABA=2;RUN=2;SNP;TS;CpG
+20	77890	.	T	C	13.2	PASS	NS=369;DP=2347;AC=1;AN=738;AF=0.001355;RA=2324;AA=5;SR=842|1482;SA=3|2;SB=0.6;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	78254	rs57707252	C	T	99.0	PASS	NS=345;DP=1534;AC=11;AN=690;AF=0.015942;RA=1494;AA=34;SR=751|743;SA=18|16;SB=0.52941;AB=0.58824;ABR=50;ABA=34;RUN=1;SNP;TS
+20	78255	.	C	A	0.0735	PASS	NS=347;DP=1551;AC=1;AN=694;AF=0.0014409;RA=1538;AA=6;SR=774|764;SA=1|5;SB=0.16667;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	78266	.	T	A	0.136	PASS	NS=354;DP=1640;AC=1;AN=708;AF=0.0014124;RA=1632;AA=4;SR=840|792;SA=2|2;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TV
+20	78455	.	G	A	99.0	PASS	NS=342;DP=1209;AC=3;AN=684;AF=0.004386;RA=1190;AA=12;SR=657|533;SA=5|7;SB=0.41667;AB=0.45;ABR=9;ABA=11;RUN=1;SNP;TS;CpG
+20	78515	.	G	A	15.5	PASS	NS=201;DP=435;AC=1;AN=402;AF=0.0024876;RA=429;AA=2;SR=37|392;SA=0|2;SB=0;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	78691	.	T	G	0.408	PASS	NS=164;DP=352;AC=1;AN=328;AF=0.0030488;RA=346;AA=3;SR=10|336;SA=0|3;SB=0;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	79234	rs6045990	T	C	99.0	PASS	NS=185;DP=299;AC=221;AN=370;AF=0.5973;RA=126;AA=171;SR=83|43;SA=113|58;SB=0.66082;AB=0.57447;ABR=27;ABA=20;RUN=1;SNP;TS
+20	79509	.	A	G	6.23	PASS	NS=341;DP=1250;AC=1;AN=682;AF=0.0014663;RA=1242;AA=3;SR=618|624;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	79697	.	A	G	6.18	PASS	NS=129;DP=195;AC=1;AN=258;AF=0.003876;RA=191;AA=2;SR=53|138;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	79749	.	A	T	0.0964	PASS	NS=158;DP=301;AC=2;AN=316;AF=0.0063291;RA=290;AA=3;SR=117|173;SA=2|1;SB=0.66667;AB=0.5;ABR=3;ABA=3;RUN=1;SNP;TV
+20	79969	.	T	G	6.07	PASS	NS=214;DP=647;AC=1;AN=428;AF=0.0023364;RA=643;AA=2;SR=615|28;SA=2|0;SB=1;AB=0;ABR=0;ABA=2;RUN=2;SNP;TV
+20	80071	rs6046657	G	A	99.0	PASS	NS=299;DP=809;AC=271;AN=598;AF=0.45318;RA=473;AA=335;SR=453|20;SA=325|10;SB=0.97015;AB=0.53559;ABR=158;ABA=137;RUN=1;SNP;TS
+20	80079	.	G	A	27.1	PASS	NS=316;DP=898;AC=7;AN=632;AF=0.011076;RA=888;AA=8;SR=851|37;SA=6|2;SB=0.75;AB=0.73333;ABR=22;ABA=8;RUN=1;SNP;TS;CpG
+20	80095	.	A	G	0.0807	PASS	NS=324;DP=1080;AC=3;AN=648;AF=0.0046296;RA=1063;AA=7;SR=935|128;SA=4|3;SB=0.57143;AB=0.61538;ABR=8;ABA=5;RUN=2;SNP;TS
+20	80165	.	G	T	0.0494	PASS	NS=365;DP=2212;AC=1;AN=730;AF=0.0013699;RA=2191;AA=14;SR=1178|1013;SA=1|13;SB=0.071429;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	80174	.	A	T	0.633	PASS	NS=369;DP=2363;AC=1;AN=738;AF=0.001355;RA=2353;AA=2;SR=1187|1166;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TV
+20	80251	.	T	C	2.09	PASS	NS=369;DP=2247;AC=1;AN=738;AF=0.001355;RA=2212;AA=25;SR=1205|1007;SA=5|20;SB=0.2;AB=0.22222;ABR=2;ABA=7;RUN=3;SNP;TS
+20	80289	.	C	A	1.02	PASS	NS=367;DP=2183;AC=1;AN=734;AF=0.0013624;RA=2177;AA=3;SR=1321|856;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TV
+20	80359	.	T	C	0.834	PASS	NS=367;DP=2201;AC=1;AN=734;AF=0.0013624;RA=2177;AA=7;SR=1148|1029;SA=6|1;SB=0.85714;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	80448	.	A	G	0.782	PASS	NS=367;DP=2320;AC=1;AN=734;AF=0.0013624;RA=2310;AA=4;SR=1056|1254;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	80481	.	G	C	99.0	PASS	NS=368;DP=2442;AC=48;AN=736;AF=0.065217;RA=2286;AA=149;SR=1092|1194;SA=62|87;SB=0.41611;AB=0.50794;ABR=128;ABA=122;RUN=1;SNP;TV
+20	80497	.	G	T	0.851	PASS	NS=366;DP=2581;AC=1;AN=732;AF=0.0013661;RA=2572;AA=5;SR=1218|1354;SA=2|3;SB=0.4;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TV
+20	80513	.	C	G	25.9	PASS	NS=369;DP=2672;AC=1;AN=738;AF=0.001355;RA=2659;AA=6;SR=1308|1351;SA=3|3;SB=0.5;AB=0.33333;ABR=2;ABA=4;RUN=2;SNP;TV
+20	80525	.	C	A	0.0588	PASS	NS=365;DP=2634;AC=1;AN=730;AF=0.0013699;RA=2619;AA=5;SR=1324|1295;SA=3|2;SB=0.6;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	80655	rs2196239	A	G	99.0	PASS	NS=366;DP=2328;AC=646;AN=732;AF=0.88251;RA=331;AA=1993;SR=147|184;SA=829|1164;SB=0.41596;AB=0.56156;ABR=260;ABA=203;RUN=1;SNP;TS
+20	80725	.	T	A	8.94	PASS	NS=366;DP=2067;AC=1;AN=732;AF=0.0013661;RA=2061;AA=2;SR=1019|1042;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	80728	.	C	G	99.0	PASS	NS=366;DP=2029;AC=17;AN=732;AF=0.023224;RA=1969;AA=56;SR=983|986;SA=27|29;SB=0.48214;AB=0.5045;ABR=56;ABA=55;RUN=1;SNP;TV
+20	80838	.	C	T	76.1	PASS	NS=365;DP=2253;AC=1;AN=730;AF=0.0013699;RA=2239;AA=6;SR=953|1286;SA=1|5;SB=0.16667;AB=0.5;ABR=4;ABA=4;RUN=1;SNP;TS;CpG
+20	80856	.	C	G	0.0837	PASS	NS=363;DP=2218;AC=1;AN=726;AF=0.0013774;RA=2206;AA=4;SR=931|1275;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	80865	.	A	C	0.0761	PASS	NS=363;DP=2195;AC=1;AN=726;AF=0.0013774;RA=2187;AA=5;SR=937|1250;SA=4|1;SB=0.8;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	80887	.	G	A	58.7	PASS	NS=361;DP=2159;AC=1;AN=722;AF=0.001385;RA=2148;AA=6;SR=901|1247;SA=3|3;SB=0.5;AB=0.55556;ABR=5;ABA=4;RUN=1;SNP;TS
+20	81001	.	T	C	39.3	PASS	NS=364;DP=1961;AC=1;AN=728;AF=0.0013736;RA=1955;AA=3;SR=979|976;SA=3|0;SB=1;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS
+20	81017	.	C	T	0.602	PASS	NS=358;DP=1953;AC=1;AN=716;AF=0.0013966;RA=1946;AA=3;SR=966|980;SA=2|1;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	81071	.	A	G	99.0	PASS	NS=363;DP=1794;AC=6;AN=726;AF=0.0082645;RA=1756;AA=20;SR=873|883;SA=8|12;SB=0.4;AB=0.38462;ABR=10;ABA=16;RUN=1;SNP;TS
+20	81282	.	A	T	3.99	PASS	NS=361;DP=1909;AC=1;AN=722;AF=0.001385;RA=1900;AA=4;SR=1029|871;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	81297	.	T	A	9.74	PASS	NS=360;DP=1948;AC=1;AN=720;AF=0.0013889;RA=1931;AA=6;SR=1062|869;SA=4|2;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	81298	.	G	A	99.0	PASS	NS=360;DP=1942;AC=5;AN=720;AF=0.0069444;RA=1923;AA=17;SR=1058|865;SA=11|6;SB=0.64706;AB=0.40909;ABR=9;ABA=13;RUN=1;SNP;TS
+20	81481	.	A	G	0.751	PASS	NS=354;DP=1746;AC=1;AN=708;AF=0.0014124;RA=1737;AA=3;SR=786|951;SA=2|1;SB=0.66667;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	81550	.	G	T	13.7	PASS	NS=351;DP=1755;AC=1;AN=702;AF=0.0014245;RA=1750;AA=3;SR=809|941;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	81551	.	A	T	10.2	PASS	NS=350;DP=1763;AC=1;AN=700;AF=0.0014286;RA=1754;AA=2;SR=809|945;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	81561	.	A	G	0.396	PASS	NS=348;DP=1704;AC=1;AN=696;AF=0.0014368;RA=1696;AA=3;SR=816|880;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	81602	.	C	G	1.28	PASS	NS=348;DP=1658;AC=1;AN=696;AF=0.0014368;RA=1645;AA=3;SR=860|785;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	81679	.	T	G	4.28	PASS	NS=350;DP=1612;AC=1;AN=700;AF=0.0014286;RA=1602;AA=5;SR=664|938;SA=1|4;SB=0.2;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	81692	.	T	C	4.66	PASS	NS=347;DP=1557;AC=1;AN=694;AF=0.0014409;RA=1550;AA=5;SR=624|926;SA=1|4;SB=0.2;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	81715	.	C	G	5.01	PASS	NS=344;DP=1520;AC=1;AN=688;AF=0.0014535;RA=1513;AA=2;SR=584|929;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	81966	.	G	A	15.2	PASS	NS=187;DP=338;AC=1;AN=374;AF=0.0026738;RA=329;AA=4;SR=172|157;SA=4|0;SB=1;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS;CpG
+20	82012	rs34365171	T	C	57.6	PASS	NS=161;DP=273;AC=49;AN=322;AF=0.15217;RA=222;AA=41;SR=75|147;SA=16|25;SB=0.39024;AB=0.6;ABR=15;ABA=10;RUN=2;SNP;TS;CpG
+20	82119	.	G	A	1.23	PASS	NS=223;DP=490;AC=1;AN=446;AF=0.0022422;RA=486;AA=2;SR=322|164;SA=1|1;SB=0.5;AB=0;ABR=0;ABA=2;RUN=1;SNP;TS
+20	82168	.	G	A	0.0662	PASS	NS=223;DP=456;AC=1;AN=446;AF=0.0022422;RA=447;AA=3;SR=316|131;SA=2|1;SB=0.66667;AB=0;ABR=0;ABA=2;RUN=1;SNP;TS;CpG
+20	82204	rs6036079	T	C	60.6	PASS	NS=275;DP=670;AC=17;AN=550;AF=0.030909;RA=633;AA=23;SR=366|267;SA=16|7;SB=0.69565;AB=0.5;ABR=11;ABA=11;RUN=1;SNP;TS;CpG
+20	82215	rs6036082	G	A	99.0	PASS	NS=313;DP=849;AC=97;AN=626;AF=0.15495;RA=715;AA=126;SR=411|304;SA=85|41;SB=0.6746;AB=0.49645;ABR=70;ABA=71;RUN=1;SNP;TS;CpG
+20	82217	rs1836442	G	A	99.0	PASS	NS=314;DP=864;AC=493;AN=628;AF=0.78503;RA=182;AA=666;SR=108|74;SA=392|274;SB=0.58859;AB=0.46875;ABR=75;ABA=83;RUN=1;SNP;TS;CpG
+20	82223	.	C	T	99.0	PASS	NS=325;DP=994;AC=20;AN=650;AF=0.030769;RA=956;AA=34;SR=548|408;SA=18|16;SB=0.52941;AB=0.53488;ABR=23;ABA=19;RUN=1;SNP;TS
+20	82239	.	A	T	7.56	PASS	NS=344;DP=1299;AC=1;AN=688;AF=0.0014535;RA=1285;AA=2;SR=747|538;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	82258	.	A	G	14.1	PASS	NS=355;DP=1549;AC=2;AN=710;AF=0.0028169;RA=1536;AA=8;SR=883|653;SA=3|5;SB=0.375;AB=0.61538;ABR=8;ABA=5;RUN=3;SNP;TS
+20	82309	.	G	A	0.136	PASS	NS=356;DP=1542;AC=1;AN=712;AF=0.0014045;RA=1528;AA=6;SR=935|593;SA=3|3;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=5;SNP;TS
+20	82359	.	T	C	15.4	PASS	NS=365;DP=1749;AC=1;AN=730;AF=0.0013699;RA=1734;AA=8;SR=1094|640;SA=5|3;SB=0.625;AB=0.625;ABR=5;ABA=3;RUN=3;SNP;TS
+20	82415	.	A	C	23.9	PASS	NS=369;DP=1845;AC=1;AN=738;AF=0.001355;RA=1831;AA=10;SR=1068|763;SA=6|4;SB=0.6;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TV
+20	82416	rs7266748	T	C	99.0	PASS	NS=369;DP=1849;AC=16;AN=738;AF=0.02168;RA=1813;AA=31;SR=1060|753;SA=14|17;SB=0.45161;AB=0.57627;ABR=34;ABA=25;RUN=1;SNP;TS
+20	82446	.	C	G	59.2	PASS	NS=359;DP=1707;AC=1;AN=718;AF=0.0013928;RA=1700;AA=4;SR=909|791;SA=2|2;SB=0.5;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TV
+20	82460	.	C	T	9.05	PASS	NS=363;DP=1665;AC=1;AN=726;AF=0.0013774;RA=1657;AA=3;SR=856|801;SA=2|1;SB=0.66667;AB=0.25;ABR=1;ABA=3;RUN=2;SNP;TS
+20	82571	.	T	C	12.6	PASS	NS=351;DP=1817;AC=1;AN=702;AF=0.0014245;RA=1807;AA=4;SR=940|867;SA=3|1;SB=0.75;AB=0.5;ABR=3;ABA=3;RUN=1;SNP;TS
+20	82701	rs62190471	T	C	99.0	PASS	NS=351;DP=1848;AC=103;AN=702;AF=0.14672;RA=1578;AA=267;SR=848|730;SA=159|108;SB=0.59551;AB=0.5063;ABR=241;ABA=235;RUN=1;SNP;TS
+20	82729	.	G	C	7.54	PASS	NS=348;DP=1793;AC=1;AN=696;AF=0.0014368;RA=1782;AA=5;SR=948|834;SA=2|3;SB=0.4;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	82783	.	C	G	0.355	PASS	NS=364;DP=1952;AC=1;AN=728;AF=0.0013736;RA=1940;AA=3;SR=954|986;SA=1|2;SB=0.33333;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TV
+20	82898	.	C	T	99.0	PASS	NS=367;DP=2131;AC=3;AN=734;AF=0.0040872;RA=2111;AA=11;SR=1035|1076;SA=7|4;SB=0.63636;AB=0.68966;ABR=20;ABA=9;RUN=3;SNP;TS
+20	82923	.	T	A	0.244	PASS	NS=368;DP=2124;AC=1;AN=736;AF=0.0013587;RA=2113;AA=2;SR=1084|1029;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	82991	.	G	C	11.7	PASS	NS=367;DP=1988;AC=1;AN=734;AF=0.0013624;RA=1974;AA=3;SR=1070|904;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	83034	.	T	C	1.7	PASS	NS=367;DP=2054;AC=1;AN=734;AF=0.0013624;RA=2021;AA=8;SR=1049|972;SA=6|2;SB=0.75;AB=0;ABR=0;ABA=2;RUN=1;SNP;TS
+20	83129	.	A	G	0.056	PASS	NS=367;DP=2217;AC=1;AN=734;AF=0.0013624;RA=2204;AA=6;SR=1098|1106;SA=0|6;SB=0;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TS
+20	83154	.	C	G	0.0482	PASS	NS=368;DP=2149;AC=1;AN=736;AF=0.0013587;RA=2137;AA=6;SR=1070|1067;SA=3|3;SB=0.5;AB=0.5;ABR=1;ABA=1;RUN=1;SNP;TV
+20	83196	rs62190472	A	T	99.0	PASS	NS=368;DP=1931;AC=14;AN=736;AF=0.019022;RA=1884;AA=39;SR=936|948;SA=18|21;SB=0.46154;AB=0.47619;ABR=30;ABA=33;RUN=3;SNP;TV
+20	83231	.	G	A	2.47	PASS	NS=339;DP=1326;AC=1;AN=678;AF=0.0014749;RA=1312;AA=5;SR=685|627;SA=3|2;SB=0.6;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	83481	.	G	T	0.0764	PASS	NS=363;DP=2028;AC=1;AN=726;AF=0.0013774;RA=2017;AA=7;SR=858|1159;SA=3|4;SB=0.42857;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	83485	.	A	C	2.92	PASS	NS=363;DP=2053;AC=1;AN=726;AF=0.0013774;RA=2047;AA=4;SR=881|1166;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	83492	.	A	T	2.75	PASS	NS=361;DP=2031;AC=1;AN=722;AF=0.001385;RA=2016;AA=11;SR=866|1150;SA=9|2;SB=0.81818;AB=0.625;ABR=5;ABA=3;RUN=6;SNP;TV
+20	83501	.	G	A	0.105	PASS	NS=362;DP=2022;AC=1;AN=724;AF=0.0013812;RA=2015;AA=2;SR=889|1126;SA=1|1;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=3;SNP;TS
+20	83570	rs6048967	T	G	99.0	PASS	NS=366;DP=2101;AC=53;AN=732;AF=0.072404;RA=1942;AA=152;SR=1026|916;SA=88|64;SB=0.57895;AB=0.47685;ABR=103;ABA=113;RUN=3;SNP;TV
+20	83611	.	C	A	99.0	PASS	NS=367;DP=2005;AC=13;AN=734;AF=0.017711;RA=1959;AA=41;SR=1062|897;SA=20|21;SB=0.4878;AB=0.51852;ABR=42;ABA=38;RUN=1;SNP;TV
+20	83613	.	T	C	0.232	PASS	NS=367;DP=2011;AC=1;AN=734;AF=0.0013624;RA=2004;AA=4;SR=1083|921;SA=2|2;SB=0.5;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	83629	.	C	T	5.45	PASS	NS=363;DP=1970;AC=1;AN=726;AF=0.0013774;RA=1962;AA=3;SR=1038|924;SA=2|1;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS;CpG
+20	83666	.	G	T	0.202	PASS	NS=360;DP=1983;AC=1;AN=720;AF=0.0013889;RA=1977;AA=3;SR=1132|845;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	83732	.	A	T	0.0538	PASS	NS=369;DP=2058;AC=1;AN=738;AF=0.001355;RA=2035;AA=9;SR=1048|987;SA=1|8;SB=0.11111;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	83765	.	A	G	1.78	PASS	NS=369;DP=2031;AC=1;AN=738;AF=0.001355;RA=2018;AA=3;SR=1058|960;SA=2|1;SB=0.66667;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	83777	.	T	C	0.0484	PASS	NS=368;DP=2022;AC=1;AN=736;AF=0.0013587;RA=2013;AA=6;SR=1109|904;SA=6|0;SB=1;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	83819	.	A	T	1.79	PASS	NS=366;DP=2143;AC=1;AN=732;AF=0.0013661;RA=2133;AA=3;SR=1253|880;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	83929	.	G	A	99.0	PASS	NS=365;DP=2235;AC=2;AN=730;AF=0.0027397;RA=2216;AA=10;SR=999|1217;SA=2|8;SB=0.2;AB=0.61538;ABR=16;ABA=10;RUN=1;SNP;TS
+20	83934	.	C	T	0.265	PASS	NS=365;DP=2214;AC=1;AN=730;AF=0.0013699;RA=2192;AA=3;SR=983|1209;SA=2|1;SB=0.66667;AB=0.83333;ABR=10;ABA=2;RUN=2;SNP;TS
+20	83966	.	C	T	0.338	PASS	NS=370;DP=2246;AC=1;AN=740;AF=0.0013514;RA=2222;AA=6;SR=1045|1177;SA=4|2;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	83971	.	C	T	22.1	PASS	NS=368;DP=2238;AC=2;AN=736;AF=0.0027174;RA=2220;AA=11;SR=1057|1163;SA=7|4;SB=0.63636;AB=0.5;ABR=8;ABA=8;RUN=1;SNP;TS;CpG
+20	83996	.	C	G	99.0	PASS	NS=366;DP=2129;AC=25;AN=732;AF=0.034153;RA=2061;AA=56;SR=1024|1037;SA=22|34;SB=0.39286;AB=0.5283;ABR=56;ABA=50;RUN=1;SNP;TV
+20	84003	.	A	G	0.091	PASS	NS=365;DP=2098;AC=1;AN=730;AF=0.0013699;RA=2068;AA=12;SR=1047|1021;SA=1|11;SB=0.083333;AB=0.85714;ABR=12;ABA=2;RUN=1;SNP;TS
+20	84079	.	G	A	45.3	PASS	NS=360;DP=1898;AC=1;AN=720;AF=0.0013889;RA=1874;AA=10;SR=901|973;SA=7|3;SB=0.7;AB=0.44444;ABR=4;ABA=5;RUN=3;SNP;TS
+20	84201	.	G	A	99.0	PASS	NS=355;DP=1809;AC=4;AN=710;AF=0.0056338;RA=1784;AA=14;SR=830|954;SA=9|5;SB=0.64286;AB=0.5;ABR=11;ABA=11;RUN=2;SNP;TS
+20	84351	.	G	A	1.43	PASS	NS=363;DP=2151;AC=1;AN=726;AF=0.0013774;RA=2138;AA=4;SR=1159|979;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	84358	.	T	C	0.98	PASS	NS=360;DP=2134;AC=1;AN=720;AF=0.0013889;RA=2108;AA=13;SR=1150|958;SA=9|4;SB=0.69231;AB=0.8;ABR=12;ABA=3;RUN=1;SNP;TS
+20	84488	.	A	G	0.241	PASS	NS=365;DP=2176;AC=2;AN=730;AF=0.0027397;RA=2139;AA=9;SR=1014|1125;SA=3|6;SB=0.33333;AB=0.5;ABR=3;ABA=3;RUN=3;SNP;TS;CpG
+20	84499	.	G	A	27.9	PASS	NS=364;DP=2141;AC=1;AN=728;AF=0.0013736;RA=2118;AA=11;SR=1047|1071;SA=5|6;SB=0.45455;AB=0.55556;ABR=5;ABA=4;RUN=2;SNP;TS
+20	84504	.	G	A	35.0	PASS	NS=366;DP=2125;AC=3;AN=732;AF=0.0040984;RA=2098;AA=13;SR=1028|1070;SA=10|3;SB=0.76923;AB=0.36364;ABR=4;ABA=7;RUN=2;SNP;TS
+20	84666	.	G	A	99.0	PASS	NS=368;DP=2163;AC=3;AN=736;AF=0.0040761;RA=2140;AA=15;SR=1118|1022;SA=6|9;SB=0.4;AB=0.28571;ABR=4;ABA=10;RUN=4;SNP;TS;CpG
+20	84727	.	G	A	88.5	PASS	NS=371;DP=2412;AC=2;AN=742;AF=0.0026954;RA=2393;AA=10;SR=1261|1132;SA=4|6;SB=0.4;AB=0.5625;ABR=9;ABA=7;RUN=1;SNP;TS
+20	84892	.	C	T	99.0	PASS	NS=368;DP=2536;AC=8;AN=736;AF=0.01087;RA=2499;AA=25;SR=1170|1329;SA=12|13;SB=0.48;AB=0.55102;ABR=27;ABA=21;RUN=1;SNP;TS
+20	84906	.	T	C	99.0	PASS	NS=369;DP=2485;AC=7;AN=738;AF=0.0094851;RA=2422;AA=30;SR=1127|1295;SA=20|10;SB=0.66667;AB=0.58491;ABR=31;ABA=20;RUN=1;SNP;TS;CpG
+20	84934	.	C	T	0.156	PASS	NS=369;DP=2365;AC=1;AN=738;AF=0.001355;RA=2353;AA=4;SR=1081|1272;SA=3|1;SB=0.75;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	84937	.	T	A	0.102	PASS	NS=369;DP=2325;AC=2;AN=738;AF=0.00271;RA=2299;AA=11;SR=1060|1239;SA=3|8;SB=0.27273;AB=0.76923;ABR=10;ABA=3;RUN=2;SNP;TV
+20	84949	.	G	A	1.84	PASS	NS=369;DP=2295;AC=1;AN=738;AF=0.001355;RA=2281;AA=5;SR=1075|1206;SA=1|4;SB=0.2;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	85116	rs7268260	C	T	99.0	PASS	NS=367;DP=2259;AC=49;AN=734;AF=0.066757;RA=2119;AA=129;SR=989|1130;SA=54|75;SB=0.4186;AB=0.50679;ABR=112;ABA=106;RUN=1;SNP;TS
+20	85180	.	A	G	2.49	PASS	NS=366;DP=2123;AC=1;AN=732;AF=0.0013661;RA=2111;AA=3;SR=882|1229;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	85182	.	C	T	6.7	PASS	NS=365;DP=2111;AC=1;AN=730;AF=0.0013699;RA=2100;AA=2;SR=874|1226;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	85195	.	A	G	0.062	PASS	NS=354;DP=2020;AC=1;AN=708;AF=0.0014124;RA=2010;AA=5;SR=851|1159;SA=2|3;SB=0.4;AB=0.875;ABR=14;ABA=2;RUN=3;SNP;TS
+20	85371	.	A	G	3.11	PASS	NS=349;DP=2019;AC=1;AN=698;AF=0.0014327;RA=2008;AA=2;SR=1054|954;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	85388	.	G	A	2.07	PASS	NS=364;DP=2082;AC=1;AN=728;AF=0.0013736;RA=2071;AA=4;SR=1054|1017;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	85414	.	G	C	0.348	PASS	NS=369;DP=2163;AC=1;AN=738;AF=0.001355;RA=2147;AA=5;SR=1106|1041;SA=3|2;SB=0.6;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TV
+20	85492	.	T	C	2.17	PASS	NS=369;DP=2347;AC=1;AN=738;AF=0.001355;RA=2323;AA=6;SR=1170|1153;SA=4|2;SB=0.66667;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TS
+20	85530	.	G	A	1.82	PASS	NS=366;DP=1908;AC=1;AN=732;AF=0.0013661;RA=1900;AA=3;SR=984|916;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	85875	.	A	G	38.7	PASS	NS=357;DP=1986;AC=2;AN=714;AF=0.0028011;RA=1979;AA=6;SR=1078|901;SA=4|2;SB=0.66667;AB=0.44444;ABR=4;ABA=5;RUN=1;SNP;TS
+20	85937	.	G	C	99.0	PASS	NS=369;DP=2379;AC=3;AN=738;AF=0.004065;RA=2348;AA=15;SR=1362|986;SA=9|6;SB=0.6;AB=0.38095;ABR=8;ABA=13;RUN=1;SNP;TV
+20	86055	.	A	C	0.233	PASS	NS=369;DP=2109;AC=1;AN=738;AF=0.001355;RA=2095;AA=7;SR=1161|934;SA=5|2;SB=0.71429;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	86103	.	G	T	10.5	PASS	NS=355;DP=2067;AC=1;AN=710;AF=0.0014085;RA=2052;AA=6;SR=1129|923;SA=2|4;SB=0.33333;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TV
+20	86115	.	G	A	99.0	PASS	NS=356;DP=2026;AC=16;AN=712;AF=0.022472;RA=1969;AA=51;SR=1039|930;SA=28|23;SB=0.54902;AB=0.48837;ABR=42;ABA=44;RUN=1;SNP;TS;CpG
+20	86335	.	T	A	2.87	PASS	NS=357;DP=2032;AC=2;AN=714;AF=0.0028011;RA=2003;AA=17;SR=925|1078;SA=0|17;SB=0;AB=0.625;ABR=10;ABA=6;RUN=6;SNP;TV
+20	86458	.	C	T	0.0675	PASS	NS=362;DP=1974;AC=1;AN=724;AF=0.0013812;RA=1959;AA=2;SR=1098|861;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	86620	.	T	A	4.96	PASS	NS=368;DP=2381;AC=1;AN=736;AF=0.0013587;RA=2365;AA=3;SR=1199|1166;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	86691	.	C	T	0.306	PASS	NS=359;DP=2285;AC=1;AN=718;AF=0.0013928;RA=2274;AA=4;SR=1261|1013;SA=2|2;SB=0.5;AB=0.84615;ABR=11;ABA=2;RUN=1;SNP;TS
+20	86719	.	A	G	0.0505	PASS	NS=362;DP=2130;AC=1;AN=724;AF=0.0013812;RA=2108;AA=9;SR=1090|1018;SA=0|9;SB=0;AB=0.75;ABR=3;ABA=1;RUN=1;SNP;TS
+20	86757	.	A	G	2.16	PASS	NS=364;DP=2159;AC=1;AN=728;AF=0.0013736;RA=2147;AA=4;SR=1029|1118;SA=1|3;SB=0.25;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	86823	.	T	G	1.16	PASS	NS=360;DP=1894;AC=1;AN=720;AF=0.0013889;RA=1867;AA=9;SR=870|997;SA=1|8;SB=0.11111;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	87003	.	A	C	43.6	PASS	NS=357;DP=2114;AC=1;AN=714;AF=0.0014006;RA=2103;AA=10;SR=846|1257;SA=8|2;SB=0.8;AB=0.28571;ABR=2;ABA=5;RUN=1;SNP;TV
+20	87029	.	C	A	6.64	PASS	NS=353;DP=2097;AC=1;AN=706;AF=0.0014164;RA=2090;AA=5;SR=842|1248;SA=4|1;SB=0.8;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	87067	.	A	T	0.0727	PASS	NS=349;DP=1846;AC=1;AN=698;AF=0.0014327;RA=1839;AA=4;SR=850|989;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	87112	rs34383360	G	A	99.0	PASS	NS=350;DP=1657;AC=181;AN=700;AF=0.25857;RA=1252;AA=400;SR=740|512;SA=233|167;SB=0.5825;AB=0.51139;ABR=247;ABA=236;RUN=4;SNP;TS;CpG
+20	87230	.	G	A	0.205	PASS	NS=347;DP=1809;AC=4;AN=694;AF=0.0057637;RA=1779;AA=26;SR=812|967;SA=1|25;SB=0.038462;AB=0.71429;ABR=15;ABA=6;RUN=8;SNP;TS
+20	87254	.	C	T	99.0	PASS	NS=333;DP=1705;AC=3;AN=666;AF=0.0045045;RA=1687;AA=11;SR=755|932;SA=5|6;SB=0.45455;AB=0.5;ABR=4;ABA=4;RUN=2;SNP;TS
+20	87265	.	A	G	0.41	PASS	NS=335;DP=1686;AC=1;AN=670;AF=0.0014925;RA=1680;AA=3;SR=813|867;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	87313	.	A	G	1.57	PASS	NS=354;DP=1886;AC=1;AN=708;AF=0.0014124;RA=1880;AA=2;SR=941|939;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	87314	.	A	T	0.279	PASS	NS=354;DP=1882;AC=1;AN=708;AF=0.0014124;RA=1874;AA=3;SR=939|935;SA=2|1;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	87362	.	A	G	99.0	PASS	NS=345;DP=1823;AC=26;AN=690;AF=0.037681;RA=1732;AA=89;SR=879|853;SA=46|43;SB=0.51685;AB=0.46809;ABR=66;ABA=75;RUN=1;SNP;TS
+20	87416	rs1935386	A	C	99.0	PASS	NS=357;DP=1755;AC=511;AN=714;AF=0.71569;RA=537;AA=1217;SR=259|278;SA=650|567;SB=0.5341;AB=0.48414;ABR=290;ABA=309;RUN=3;SNP;TV
+20	87471	.	T	C	0.608	PASS	NS=349;DP=1783;AC=1;AN=698;AF=0.0014327;RA=1768;AA=5;SR=935|833;SA=1|4;SB=0.2;AB=0.86667;ABR=13;ABA=2;RUN=1;SNP;TS
+20	87555	.	T	A	0.0485	PASS	NS=355;DP=1728;AC=1;AN=710;AF=0.0014085;RA=1715;AA=7;SR=840|875;SA=0|7;SB=0;AB=0.75;ABR=6;ABA=2;RUN=5;SNP;TV
+20	87682	.	G	A	0.887	PASS	NS=355;DP=1823;AC=1;AN=710;AF=0.0014085;RA=1803;AA=4;SR=925|878;SA=2|2;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TS
+20	87790	.	C	T	99.0	PASS	NS=345;DP=1766;AC=16;AN=690;AF=0.023188;RA=1705;AA=49;SR=867|838;SA=32|17;SB=0.65306;AB=0.5102;ABR=50;ABA=46;RUN=2;SNP;TS
+20	88003	.	A	G	1.57	PASS	NS=343;DP=1528;AC=1;AN=686;AF=0.0014577;RA=1524;AA=3;SR=698|826;SA=2|1;SB=0.66667;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	88031	.	T	C	1.06	PASS	NS=347;DP=1727;AC=1;AN=694;AF=0.0014409;RA=1710;AA=4;SR=899|811;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	88058	.	T	C	0.444	PASS	NS=367;DP=2138;AC=1;AN=734;AF=0.0013624;RA=2122;AA=7;SR=1196|926;SA=4|3;SB=0.57143;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS;CpG
+20	88072	.	C	T	99.0	PASS	NS=372;DP=2307;AC=6;AN=744;AF=0.0080645;RA=2286;AA=17;SR=1310|976;SA=6|11;SB=0.35294;AB=0.54545;ABR=18;ABA=15;RUN=1;SNP;TS;CpG
+20	88123	.	C	T	0.301	PASS	NS=357;DP=2104;AC=1;AN=714;AF=0.0014006;RA=2091;AA=5;SR=1202|889;SA=3|2;SB=0.6;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS;CpG
+20	88155	.	T	C	99.0	PASS	NS=364;DP=2136;AC=17;AN=728;AF=0.023352;RA=2082;AA=41;SR=1144|938;SA=30|11;SB=0.73171;AB=0.60494;ABR=49;ABA=32;RUN=1;SNP;TS
+20	88162	.	G	A	47.4	PASS	NS=369;DP=2151;AC=1;AN=738;AF=0.001355;RA=2139;AA=7;SR=1175|964;SA=2|5;SB=0.28571;AB=0.61538;ABR=8;ABA=5;RUN=2;SNP;TS;CpG
+20	88320	.	A	T	0.798	PASS	NS=350;DP=1709;AC=1;AN=700;AF=0.0014286;RA=1700;AA=3;SR=1029|671;SA=1|2;SB=0.33333;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TV
+20	88565	.	A	G	0.361	PASS	NS=331;DP=1574;AC=1;AN=662;AF=0.0015106;RA=1565;AA=3;SR=773|792;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	88647	.	T	G	0.076	PASS	NS=363;DP=2151;AC=1;AN=726;AF=0.0013774;RA=2140;AA=4;SR=1060|1080;SA=0|4;SB=0;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	88750	.	T	C	5.86	PASS	NS=360;DP=1753;AC=1;AN=720;AF=0.0013889;RA=1747;AA=2;SR=887|860;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	88814	.	T	C	0.327	PASS	NS=335;DP=1461;AC=1;AN=670;AF=0.0014925;RA=1447;AA=4;SR=749|698;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TS
+20	88827	rs6051504	C	A	99.0	PASS	NS=328;DP=1379;AC=133;AN=656;AF=0.20274;RA=1086;AA=290;SR=531|555;SA=135|155;SB=0.46552;AB=0.4788;ABR=192;ABA=209;RUN=6;SNP;TV
+20	88874	.	C	T	3.41	PASS	NS=346;DP=1464;AC=1;AN=692;AF=0.0014451;RA=1450;AA=3;SR=694|756;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	88880	.	T	C	69.1	PASS	NS=352;DP=1515;AC=9;AN=704;AF=0.012784;RA=1470;AA=16;SR=727|743;SA=11|5;SB=0.6875;AB=0.6;ABR=21;ABA=13;RUN=1;SNP;TS
+20	88924	.	A	T	15.2	PASS	NS=357;DP=1741;AC=2;AN=714;AF=0.0028011;RA=1730;AA=6;SR=863|867;SA=3|3;SB=0.5;AB=0.5;ABR=5;ABA=5;RUN=2;SNP;TV
+20	89032	.	C	T	87.2	PASS	NS=356;DP=1715;AC=1;AN=712;AF=0.0014045;RA=1703;AA=6;SR=753|950;SA=4|2;SB=0.66667;AB=0.16667;ABR=1;ABA=5;RUN=1;SNP;TS;CpG
+20	89057	.	T	C	11.1	PASS	NS=346;DP=1555;AC=1;AN=692;AF=0.0014451;RA=1546;AA=2;SR=644|902;SA=2|0;SB=1;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	89061	.	C	T	3.13	PASS	NS=338;DP=1513;AC=1;AN=676;AF=0.0014793;RA=1503;AA=3;SR=618|885;SA=3|0;SB=1;AB=0.78571;ABR=11;ABA=3;RUN=1;SNP;TS
+20	89208	.	T	C	1.55	PASS	NS=348;DP=1527;AC=1;AN=696;AF=0.0014368;RA=1515;AA=2;SR=795|720;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	89322	.	C	G	0.0545	PASS	NS=296;DP=1182;AC=1;AN=592;AF=0.0016892;RA=1176;AA=2;SR=694|482;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	89442	.	G	T	0.338	PASS	NS=345;DP=1852;AC=1;AN=690;AF=0.0014493;RA=1844;AA=6;SR=1099|745;SA=3|3;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=3;SNP;TV
+20	89517	.	A	T	4.6	PASS	NS=360;DP=2035;AC=1;AN=720;AF=0.0013889;RA=2030;AA=2;SR=1134|896;SA=1|1;SB=0.5;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	89661	.	G	A	47.0	PASS	NS=366;DP=2184;AC=2;AN=732;AF=0.0027322;RA=2175;AA=5;SR=1085|1090;SA=4|1;SB=0.8;AB=0.55556;ABR=5;ABA=4;RUN=1;SNP;TS
+20	89739	.	T	A	0.145	PASS	NS=359;DP=1950;AC=2;AN=718;AF=0.0027855;RA=1928;AA=8;SR=951|977;SA=8|0;SB=1;AB=0.625;ABR=5;ABA=3;RUN=1;SNP;TV
+20	89750	.	G	T	0.157	PASS	NS=361;DP=1896;AC=1;AN=722;AF=0.001385;RA=1882;AA=10;SR=971|911;SA=7|3;SB=0.7;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TV
+20	89784	.	C	T	4.3	PASS	NS=350;DP=1854;AC=1;AN=700;AF=0.0014286;RA=1848;AA=3;SR=1005|843;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	89860	.	C	A	2.95	PASS	NS=371;DP=2493;AC=1;AN=742;AF=0.0013477;RA=2480;AA=9;SR=1216|1264;SA=3|6;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TV
+20	89871	.	T	G	3.36	PASS	NS=364;DP=2415;AC=1;AN=728;AF=0.0013736;RA=2403;AA=9;SR=1148|1255;SA=0|9;SB=0;AB=0.66667;ABR=6;ABA=3;RUN=3;SNP;TV
+20	90008	rs1858595	C	A	99.0	PASS	NS=346;DP=1902;AC=69;AN=692;AF=0.099711;RA=1671;AA=228;SR=919|752;SA=125|103;SB=0.54825;AB=0.48;ABR=168;ABA=182;RUN=4;SNP;TV
+20	90187	.	A	C	0.0959	PASS	NS=370;DP=2329;AC=1;AN=740;AF=0.0013514;RA=2306;AA=14;SR=1020|1286;SA=7|7;SB=0.5;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	90407	.	G	A	99.0	PASS	NS=368;DP=2398;AC=1;AN=736;AF=0.0013587;RA=2378;AA=11;SR=1117|1261;SA=3|8;SB=0.27273;AB=0.35714;ABR=5;ABA=9;RUN=2;SNP;TS;CpG
+20	90509	.	G	A	0.677	PASS	NS=370;DP=2346;AC=1;AN=740;AF=0.0013514;RA=2331;AA=2;SR=1216|1115;SA=1|1;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TS
+20	90541	.	C	T	99.0	PASS	NS=371;DP=2334;AC=4;AN=742;AF=0.0053908;RA=2300;AA=23;SR=1229|1071;SA=11|12;SB=0.47826;AB=0.41667;ABR=15;ABA=21;RUN=1;SNP;TS;CpG
+20	90542	.	G	A	0.692	PASS	NS=371;DP=2337;AC=1;AN=742;AF=0.0013477;RA=2318;AA=16;SR=1245|1073;SA=2|14;SB=0.125;AB=0.66667;ABR=6;ABA=3;RUN=3;SNP;TS;CpG
+20	90570	.	G	A	23.7	PASS	NS=370;DP=2343;AC=1;AN=740;AF=0.0013514;RA=2331;AA=6;SR=1221|1110;SA=3|3;SB=0.5;AB=0.42857;ABR=3;ABA=4;RUN=3;SNP;TS
+20	90628	.	G	T	6.52	PASS	NS=371;DP=2396;AC=1;AN=742;AF=0.0013477;RA=2379;AA=6;SR=1154|1225;SA=1|5;SB=0.16667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	90688	.	T	C	0.367	PASS	NS=370;DP=2304;AC=1;AN=740;AF=0.0013514;RA=2272;AA=15;SR=946|1326;SA=6|9;SB=0.4;AB=0.84615;ABR=11;ABA=2;RUN=2;SNP;TS
+20	90752	.	A	C	0.122	PASS	NS=370;DP=2411;AC=1;AN=740;AF=0.0013514;RA=2399;AA=6;SR=1210|1189;SA=6|0;SB=1;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	90795	.	C	T	0.18	PASS	NS=368;DP=2454;AC=1;AN=736;AF=0.0013587;RA=2443;AA=4;SR=1318|1125;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	90814	.	T	C	43.3	PASS	NS=368;DP=2403;AC=4;AN=736;AF=0.0054348;RA=2388;AA=10;SR=1294|1094;SA=4|6;SB=0.4;AB=0.6;ABR=12;ABA=8;RUN=1;SNP;TS
+20	90826	.	T	A	0.0721	PASS	NS=367;DP=2295;AC=1;AN=734;AF=0.0013624;RA=2287;AA=5;SR=1231|1056;SA=3|2;SB=0.6;AB=0.83333;ABR=10;ABA=2;RUN=4;SNP;TV
+20	90984	rs1077784	A	G	99.0	PASS	NS=361;DP=2035;AC=150;AN=722;AF=0.20776;RA=1619;AA=410;SR=766|853;SA=181|229;SB=0.44146;AB=0.5;ABR=331;ABA=330;RUN=1;SNP;TS
+20	91053	.	G	A	1.89	PASS	NS=361;DP=2062;AC=1;AN=722;AF=0.001385;RA=2051;AA=4;SR=1080|971;SA=3|1;SB=0.75;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	91072	.	G	A	9.59	PASS	NS=361;DP=2180;AC=1;AN=722;AF=0.001385;RA=2166;AA=8;SR=1078|1088;SA=1|7;SB=0.125;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	91088	rs2002370	C	T	99.0	PASS	NS=363;DP=2177;AC=616;AN=726;AF=0.84848;RA=386;AA=1782;SR=187|199;SA=833|949;SB=0.46745;AB=0.49684;ABR=236;ABA=239;RUN=1;SNP;TS
+20	91217	.	T	C	0.0587	PASS	NS=369;DP=2369;AC=2;AN=738;AF=0.00271;RA=2361;AA=5;SR=1348|1013;SA=3|2;SB=0.6;AB=0.8;ABR=12;ABA=3;RUN=1;SNP;TS;CpG
+20	91227	rs6107256	C	T	99.0	PASS	NS=369;DP=2355;AC=25;AN=738;AF=0.033875;RA=2274;AA=74;SR=1302|972;SA=44|30;SB=0.59459;AB=0.46018;ABR=52;ABA=61;RUN=3;SNP;TS
+20	91346	rs11698455	G	A	99.0	PASS	NS=369;DP=2207;AC=150;AN=738;AF=0.20325;RA=1744;AA=456;SR=974|770;SA=250|206;SB=0.54825;AB=0.49656;ABR=361;ABA=363;RUN=2;SNP;TS
+20	91474	.	C	A	0.361	PASS	NS=369;DP=2458;AC=1;AN=738;AF=0.001355;RA=2449;AA=4;SR=1260|1189;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=5;SNP;TV
+20	91497	.	A	G	0.291	PASS	NS=370;DP=2513;AC=1;AN=740;AF=0.0013514;RA=2504;AA=3;SR=1280|1224;SA=2|1;SB=0.66667;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS;CpG
+20	91508	rs6051659	G	A	99.0	PASS	NS=369;DP=2483;AC=621;AN=738;AF=0.84146;RA=424;AA=2039;SR=222|202;SA=1036|1003;SB=0.50809;AB=0.52604;ABR=303;ABA=270;RUN=1;SNP;TS
+20	91707	rs8122066	C	T	99.0	PASS	NS=369;DP=2273;AC=112;AN=738;AF=0.15176;RA=1930;AA=291;SR=948|982;SA=137|154;SB=0.47079;AB=0.53738;ABR=230;ABA=197;RUN=1;SNP;TS
+20	91716	.	C	T	99.0	PASS	NS=368;DP=2309;AC=6;AN=736;AF=0.0081522;RA=2285;AA=18;SR=1117|1168;SA=7|11;SB=0.38889;AB=0.60465;ABR=26;ABA=17;RUN=2;SNP;TS
+20	91718	.	C	T	61.6	PASS	NS=368;DP=2338;AC=3;AN=736;AF=0.0040761;RA=2322;AA=10;SR=1129|1193;SA=8|2;SB=0.8;AB=0.5;ABR=9;ABA=9;RUN=2;SNP;TS
+20	91778	.	T	A	2.05	PASS	NS=366;DP=2459;AC=1;AN=732;AF=0.0013661;RA=2444;AA=7;SR=1123|1321;SA=5|2;SB=0.71429;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TV
+20	91863	.	A	G	1.48	PASS	NS=364;DP=2501;AC=1;AN=728;AF=0.0013736;RA=2488;AA=4;SR=1261|1227;SA=3|1;SB=0.75;AB=0.6;ABR=3;ABA=2;RUN=4;SNP;TS
+20	91920	.	C	A	1.42	PASS	NS=368;DP=2547;AC=1;AN=736;AF=0.0013587;RA=2530;AA=6;SR=1225|1305;SA=3|3;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	91937	.	T	A	15.2	PASS	NS=368;DP=2523;AC=1;AN=736;AF=0.0013587;RA=2492;AA=7;SR=1179|1313;SA=5|2;SB=0.71429;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	91951	.	G	A	99.0	PASS	NS=364;DP=2528;AC=3;AN=728;AF=0.0041209;RA=2504;AA=12;SR=1185|1319;SA=5|7;SB=0.41667;AB=0.62069;ABR=18;ABA=11;RUN=1;SNP;TS
+20	91971	.	G	A	99.0	PASS	NS=367;DP=2448;AC=4;AN=734;AF=0.0054496;RA=2412;AA=26;SR=1136|1276;SA=9|17;SB=0.34615;AB=0.54545;ABR=24;ABA=20;RUN=1;SNP;TS
+20	91987	.	A	C	2.61	PASS	NS=366;DP=2461;AC=1;AN=732;AF=0.0013661;RA=2447;AA=8;SR=1115|1332;SA=5|3;SB=0.625;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	91991	.	G	C	99.0	PASS	NS=367;DP=2461;AC=12;AN=734;AF=0.016349;RA=2421;AA=30;SR=1104|1317;SA=12|18;SB=0.4;AB=0.525;ABR=21;ABA=19;RUN=2;SNP;TV
+20	92037	.	G	T	18.0	PASS	NS=369;DP=2484;AC=1;AN=738;AF=0.001355;RA=2465;AA=11;SR=1128|1337;SA=6|5;SB=0.54545;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	92080	.	T	C	99.0	PASS	NS=363;DP=2461;AC=10;AN=726;AF=0.013774;RA=2425;AA=32;SR=1182|1243;SA=15|17;SB=0.46875;AB=0.46341;ABR=19;ABA=22;RUN=1;SNP;TS
+20	92091	.	C	A	3.93	PASS	NS=363;DP=2512;AC=1;AN=726;AF=0.0013774;RA=2502;AA=3;SR=1238|1264;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TV
+20	92171	.	T	G	0.0778	PASS	NS=361;DP=2344;AC=1;AN=722;AF=0.001385;RA=2332;AA=6;SR=1179|1153;SA=1|5;SB=0.16667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	92207	.	T	C	1.8	PASS	NS=360;DP=2413;AC=1;AN=720;AF=0.0013889;RA=2409;AA=2;SR=1146|1263;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS;CpG
+20	92366	rs13039134	A	G	99.0	PASS	NS=359;DP=2411;AC=131;AN=718;AF=0.18245;RA=1937;AA=464;SR=930|1007;SA=219|245;SB=0.47198;AB=0.50995;ABR=282;ABA=269;RUN=1;SNP;TS
+20	92383	.	T	C	0.775	PASS	NS=364;DP=2395;AC=1;AN=728;AF=0.0013736;RA=2377;AA=6;SR=1138|1239;SA=5|1;SB=0.83333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	92421	.	A	C	8.1	PASS	NS=366;DP=2327;AC=1;AN=732;AF=0.0013661;RA=2315;AA=6;SR=1224|1091;SA=5|1;SB=0.83333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	92441	.	T	C	2.12	PASS	NS=364;DP=2420;AC=1;AN=728;AF=0.0013736;RA=2406;AA=6;SR=1351|1055;SA=2|4;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	92492	.	G	A	0.0468	PASS	NS=366;DP=2377;AC=1;AN=732;AF=0.0013661;RA=2366;AA=2;SR=1174|1192;SA=1|1;SB=0.5;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TS
+20	92527	rs1418260	A	G	99.0	PASS	NS=371;DP=2105;AC=644;AN=742;AF=0.86792;RA=317;AA=1752;SR=144|173;SA=822|930;SB=0.46918;AB=0.51415;ABR=218;ABA=198;RUN=1;SNP;TS;CpG
+20	92712	.	T	C	0.198	PASS	NS=361;DP=2260;AC=1;AN=722;AF=0.001385;RA=2241;AA=10;SR=1190|1051;SA=6|4;SB=0.6;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	92774	.	T	C	0.403	PASS	NS=364;DP=2560;AC=1;AN=728;AF=0.0013736;RA=2548;AA=3;SR=1242|1306;SA=2|1;SB=0.66667;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TS
+20	92816	.	T	C	0.817	PASS	NS=369;DP=2431;AC=1;AN=738;AF=0.001355;RA=2407;AA=12;SR=1073|1334;SA=2|10;SB=0.16667;AB=0.77778;ABR=7;ABA=2;RUN=3;SNP;TS
+20	92865	.	T	C	10.2	PASS	NS=346;DP=2171;AC=2;AN=692;AF=0.0028902;RA=2155;AA=5;SR=1041|1114;SA=3|2;SB=0.6;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS;CpG
+20	92891	rs6051804	A	G	99.0	PASS	NS=353;DP=2023;AC=99;AN=706;AF=0.14023;RA=1744;AA=258;SR=877|867;SA=137|121;SB=0.53101;AB=0.47804;ABR=185;ABA=200;RUN=1;SNP;TS
+20	92972	.	G	A	9.84	PASS	NS=362;DP=2148;AC=1;AN=724;AF=0.0013812;RA=2140;AA=6;SR=1068|1072;SA=2|4;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	93066	.	C	T	0.0559	PASS	NS=356;DP=2150;AC=1;AN=712;AF=0.0014045;RA=2137;AA=3;SR=1048|1089;SA=1|2;SB=0.33333;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TS
+20	93114	.	C	T	0.601	PASS	NS=356;DP=2138;AC=1;AN=712;AF=0.0014045;RA=2132;AA=2;SR=970|1162;SA=1|1;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TS
+20	93169	rs6051834	C	T	99.0	PASS	NS=352;DP=2227;AC=25;AN=704;AF=0.035511;RA=2133;AA=88;SR=999|1134;SA=36|52;SB=0.40909;AB=0.44681;ABR=63;ABA=77;RUN=1;SNP;TS
+20	93175	.	C	A	0.159	PASS	NS=359;DP=2283;AC=1;AN=718;AF=0.0013928;RA=2272;AA=5;SR=1057|1215;SA=2|3;SB=0.4;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TV
+20	93327	.	T	C	99.0	PASS	NS=352;DP=1862;AC=25;AN=704;AF=0.035511;RA=1797;AA=60;SR=792|1005;SA=20|40;SB=0.33333;AB=0.53535;ABR=53;ABA=46;RUN=3;SNP;TS
+20	93343	.	T	C	1.43	PASS	NS=351;DP=1897;AC=1;AN=702;AF=0.0014245;RA=1886;AA=3;SR=804|1082;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	93356	.	C	T	0.0835	PASS	NS=365;DP=1919;AC=1;AN=730;AF=0.0013699;RA=1910;AA=2;SR=804|1106;SA=1|1;SB=0.5;AB=0.78571;ABR=11;ABA=2;RUN=1;SNP;TS
+20	93389	.	A	G	10.9	PASS	NS=361;DP=1775;AC=2;AN=722;AF=0.0027701;RA=1758;AA=5;SR=744|1014;SA=3|2;SB=0.6;AB=0.5;ABR=4;ABA=4;RUN=1;SNP;TS
+20	93406	.	T	C	99.0	PASS	NS=350;DP=1595;AC=7;AN=700;AF=0.01;RA=1573;AA=18;SR=651|922;SA=10|8;SB=0.55556;AB=0.55;ABR=22;ABA=18;RUN=1;SNP;TS
+20	93428	.	T	C	3.27	PASS	NS=334;DP=1422;AC=1;AN=668;AF=0.001497;RA=1415;AA=3;SR=565|850;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS;CpG
+20	93440	rs6051847	A	G	99.0	PASS	NS=327;DP=1360;AC=157;AN=654;AF=0.24006;RA=1041;AA=315;SR=395|646;SA=136|179;SB=0.43175;AB=0.50992;ABR=180;ABA=172;RUN=2;SNP;TS
+20	93499	rs6051856	T	C	99.0	PASS	NS=365;DP=1887;AC=82;AN=730;AF=0.11233;RA=1681;AA=203;SR=679|1002;SA=79|124;SB=0.38916;AB=0.48855;ABR=128;ABA=134;RUN=1;SNP;TS;CpG
+20	93684	rs6037600	A	G	60.8	PASS	NS=182;DP=336;AC=34;AN=364;AF=0.093407;RA=256;AA=30;SR=174|82;SA=19|11;SB=0.63333;AB=0.34783;ABR=8;ABA=14;RUN=1;SNP;TS;CpG
+20	93704	.	G	C	64.2	PASS	NS=230;DP=445;AC=12;AN=460;AF=0.026087;RA=428;AA=12;SR=245|183;SA=4|8;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	93718	.	T	C	99.0	PASS	NS=260;DP=565;AC=55;AN=520;AF=0.10577;RA=498;AA=64;SR=267|231;SA=37|27;SB=0.57812;AB=0.5;ABR=30;ABA=30;RUN=2;SNP;TS
+20	93739	.	A	G	99.0	PASS	NS=278;DP=706;AC=75;AN=556;AF=0.13489;RA=582;AA=91;SR=316|266;SA=55|36;SB=0.6044;AB=0.48235;ABR=41;ABA=44;RUN=1;SNP;TS;CpG
+20	93931	rs6051884	G	A	99.0	PASS	NS=325;DP=1064;AC=167;AN=650;AF=0.25692;RA=811;AA=248;SR=366|445;SA=126|122;SB=0.50806;AB=0.55128;ABR=129;ABA=105;RUN=1;SNP;TS
+20	94019	.	C	T	0.498	PASS	NS=360;DP=1907;AC=1;AN=720;AF=0.0013889;RA=1900;AA=5;SR=1175|725;SA=3|2;SB=0.6;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	94036	.	G	A	99.0	PASS	NS=355;DP=1929;AC=25;AN=710;AF=0.035211;RA=1850;AA=68;SR=1138|712;SA=44|24;SB=0.64706;AB=0.48958;ABR=47;ABA=49;RUN=1;SNP;TS
+20	94087	.	T	C	25.9	PASS	NS=364;DP=1913;AC=2;AN=728;AF=0.0027473;RA=1901;AA=7;SR=1020|881;SA=4|3;SB=0.57143;AB=0.5;ABR=4;ABA=4;RUN=2;SNP;TS;CpG
+20	94091	rs6051892	T	C	99.0	PASS	NS=363;DP=1926;AC=93;AN=726;AF=0.1281;RA=1686;AA=228;SR=919|767;SA=116|112;SB=0.50877;AB=0.4822;ABR=149;ABA=156;RUN=1;SNP;TS
+20	94179	.	G	A	9.12	PASS	NS=356;DP=1627;AC=1;AN=712;AF=0.0014045;RA=1617;AA=3;SR=942|675;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	94256	.	A	C	0.101	PASS	NS=355;DP=1594;AC=1;AN=710;AF=0.0014085;RA=1565;AA=4;SR=725|840;SA=3|1;SB=0.75;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	94307	.	C	A	8.46	PASS	NS=339;DP=1691;AC=1;AN=678;AF=0.0014749;RA=1675;AA=4;SR=703|972;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	94528	rs59920385	T	G	99.0	PASS	NS=349;DP=1836;AC=84;AN=698;AF=0.12034;RA=1656;AA=177;SR=898|758;SA=96|81;SB=0.54237;AB=0.52747;ABR=144;ABA=129;RUN=1;SNP;TV
+20	94588	.	G	A	0.244	PASS	NS=364;DP=2022;AC=2;AN=728;AF=0.0027473;RA=2006;AA=7;SR=1153|853;SA=5|2;SB=0.71429;AB=0.80952;ABR=17;ABA=3;RUN=1;SNP;TS
+20	94592	rs60976651	T	A	99.0	PASS	NS=365;DP=2021;AC=89;AN=730;AF=0.12192;RA=1806;AA=212;SR=1024|782;SA=123|89;SB=0.58019;AB=0.5216;ABR=169;ABA=155;RUN=3;SNP;TV
+20	94624	.	G	T	99.0	PASS	NS=361;DP=1991;AC=15;AN=722;AF=0.020776;RA=1949;AA=39;SR=1051|898;SA=25|14;SB=0.64103;AB=0.5;ABR=17;ABA=17;RUN=2;SNP;TV
+20	94704	.	G	A	99.0	PASS	NS=361;DP=2028;AC=2;AN=722;AF=0.0027701;RA=2015;AA=8;SR=958|1057;SA=4|4;SB=0.5;AB=0.41667;ABR=5;ABA=7;RUN=1;SNP;TS;CpG
+20	94717	.	T	C	57.7	PASS	NS=365;DP=1994;AC=1;AN=730;AF=0.0013699;RA=1985;AA=6;SR=926|1059;SA=4|2;SB=0.66667;AB=0.55556;ABR=5;ABA=4;RUN=1;SNP;TS
+20	94760	.	A	G	99.0	PASS	NS=356;DP=2012;AC=22;AN=712;AF=0.030899;RA=1957;AA=50;SR=987|970;SA=19|31;SB=0.38;AB=0.55046;ABR=60;ABA=48;RUN=2;SNP;TS
+20	94794	.	T	C	0.713	PASS	NS=365;DP=2100;AC=1;AN=730;AF=0.0013699;RA=2091;AA=2;SR=1072|1019;SA=1|1;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	94952	rs1857092	G	T	99.0	PASS	NS=360;DP=2103;AC=157;AN=720;AF=0.21806;RA=1678;AA=422;SR=854|824;SA=209|213;SB=0.49526;AB=0.49323;ABR=255;ABA=262;RUN=3;SNP;TV
+20	94973	.	T	A	0.162	PASS	NS=363;DP=2064;AC=1;AN=726;AF=0.0013774;RA=2059;AA=2;SR=1059|1000;SA=1|1;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	95052	.	T	C	54.2	PASS	NS=361;DP=1889;AC=1;AN=722;AF=0.001385;RA=1877;AA=5;SR=937|940;SA=2|3;SB=0.4;AB=0.33333;ABR=2;ABA=4;RUN=1;SNP;TS
+20	95093	rs6037629	T	G	99.0	PASS	NS=364;DP=1944;AC=95;AN=728;AF=0.13049;RA=1730;AA=212;SR=840|890;SA=99|113;SB=0.46698;AB=0.46619;ABR=131;ABA=150;RUN=1;SNP;TV
+20	95104	.	A	G	4.49	PASS	NS=362;DP=1930;AC=1;AN=724;AF=0.0013812;RA=1921;AA=3;SR=930|991;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	95186	.	T	C	6.33	PASS	NS=359;DP=1991;AC=1;AN=718;AF=0.0013928;RA=1986;AA=3;SR=977|1009;SA=1|2;SB=0.33333;AB=0;ABR=0;ABA=3;RUN=1;SNP;TS
+20	95249	.	C	G	1.12	PASS	NS=363;DP=1934;AC=1;AN=726;AF=0.0013774;RA=1923;AA=4;SR=955|968;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	95360	.	C	G	0.0671	PASS	NS=365;DP=2104;AC=1;AN=730;AF=0.0013699;RA=2088;AA=3;SR=1177|911;SA=2|1;SB=0.66667;AB=0.86667;ABR=13;ABA=2;RUN=1;SNP;TV
+20	95601	.	A	G	10.6	PASS	NS=368;DP=2205;AC=1;AN=736;AF=0.0013587;RA=2172;AA=14;SR=1077|1095;SA=2|12;SB=0.14286;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	95603	.	T	C	0.0469	PASS	NS=347;DP=1778;AC=1;AN=694;AF=0.0014409;RA=1758;AA=5;SR=858|900;SA=1|4;SB=0.2;AB=0.8;ABR=8;ABA=2;RUN=3;SNP;TS
+20	95619	.	C	T	33.4	PASS	NS=368;DP=2234;AC=2;AN=736;AF=0.0027174;RA=2205;AA=8;SR=1105|1100;SA=7|1;SB=0.875;AB=0.57143;ABR=8;ABA=6;RUN=1;SNP;TS
+20	95627	.	C	T	99.0	PASS	NS=368;DP=2216;AC=6;AN=736;AF=0.0081522;RA=2175;AA=22;SR=1082|1093;SA=10|12;SB=0.45455;AB=0.40541;ABR=15;ABA=21;RUN=1;SNP;TS;CpG
+20	95781	.	A	T	0.36	PASS	NS=363;DP=2225;AC=1;AN=726;AF=0.0013774;RA=2185;AA=10;SR=1083|1102;SA=6|4;SB=0.6;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	95836	.	T	C	5.74	PASS	NS=365;DP=2341;AC=1;AN=730;AF=0.0013699;RA=2320;AA=11;SR=1153|1167;SA=7|4;SB=0.63636;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	95989	.	C	T	0.0518	PASS	NS=364;DP=2264;AC=1;AN=728;AF=0.0013736;RA=2235;AA=5;SR=1159|1076;SA=4|1;SB=0.8;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	96026	.	C	T	83.3	PASS	NS=362;DP=2328;AC=2;AN=724;AF=0.0027624;RA=2304;AA=10;SR=1145|1159;SA=4|6;SB=0.4;AB=0.57895;ABR=11;ABA=8;RUN=2;SNP;TS
+20	96038	.	G	C	0.823	PASS	NS=362;DP=2311;AC=2;AN=724;AF=0.0027624;RA=2279;AA=19;SR=1095|1184;SA=9|10;SB=0.47368;AB=0.5;ABR=4;ABA=4;RUN=2;SNP;TV
+20	96141	.	T	C	0.0737	PASS	NS=367;DP=2161;AC=1;AN=734;AF=0.0013624;RA=2126;AA=13;SR=1101|1025;SA=13|0;SB=1;AB=0.75;ABR=3;ABA=1;RUN=1;SNP;TS;CpG
+20	96166	.	C	T	1.2	PASS	NS=367;DP=2187;AC=2;AN=734;AF=0.0027248;RA=2169;AA=7;SR=1101|1068;SA=3|4;SB=0.42857;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TS;CpG
+20	96213	.	C	A	0.0772	PASS	NS=359;DP=2247;AC=1;AN=718;AF=0.0013928;RA=2231;AA=8;SR=994|1237;SA=3|5;SB=0.375;AB=0.85714;ABR=12;ABA=2;RUN=1;SNP;TV
+20	96325	.	C	T	0.047	PASS	NS=364;DP=2278;AC=1;AN=728;AF=0.0013736;RA=2256;AA=8;SR=1018|1238;SA=5|3;SB=0.625;AB=0.8;ABR=4;ABA=1;RUN=1;SNP;TS
+20	96369	.	A	G	99.0	PASS	NS=366;DP=2148;AC=9;AN=732;AF=0.012295;RA=2087;AA=37;SR=1003|1084;SA=14|23;SB=0.37838;AB=0.5;ABR=21;ABA=20;RUN=2;SNP;TS;CpG
+20	96421	.	G	C	1.04	PASS	NS=363;DP=2132;AC=1;AN=726;AF=0.0013774;RA=2103;AA=12;SR=943|1160;SA=6|6;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	96497	.	C	G	16.9	PASS	NS=362;DP=1926;AC=2;AN=724;AF=0.0027624;RA=1908;AA=6;SR=907|1001;SA=5|1;SB=0.83333;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TV
+20	96579	.	G	A	24.7	PASS	NS=359;DP=1704;AC=5;AN=718;AF=0.0069638;RA=1670;AA=17;SR=848|822;SA=9|8;SB=0.52941;AB=0.52632;ABR=10;ABA=9;RUN=1;SNP;TS
+20	96646	.	G	A	0.141	PASS	NS=364;DP=1850;AC=2;AN=728;AF=0.0027473;RA=1823;AA=6;SR=961|862;SA=4|2;SB=0.66667;AB=0.57143;ABR=4;ABA=3;RUN=2;SNP;TS
+20	96670	.	C	T	2.72	PASS	NS=366;DP=1963;AC=1;AN=732;AF=0.0013661;RA=1953;AA=4;SR=1050|903;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	96695	.	C	T	13.0	PASS	NS=364;DP=1927;AC=2;AN=728;AF=0.0027473;RA=1894;AA=13;SR=1024|870;SA=12|1;SB=0.92308;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TS
+20	96815	.	A	G	0.711	PASS	NS=371;DP=2127;AC=1;AN=742;AF=0.0013477;RA=2098;AA=18;SR=1051|1047;SA=1|17;SB=0.055556;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS;CpG
+20	96857	.	T	A	0.885	PASS	NS=366;DP=2378;AC=1;AN=732;AF=0.0013661;RA=2341;AA=12;SR=1217|1124;SA=11|1;SB=0.91667;AB=0.57143;ABR=4;ABA=2;RUN=3;SNP;TV
+20	96872	.	G	T	0.0924	PASS	NS=368;DP=2394;AC=1;AN=736;AF=0.0013587;RA=2385;AA=5;SR=1289|1096;SA=0|5;SB=0;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TV
+20	96891	.	C	T	4.45	PASS	NS=365;DP=2401;AC=1;AN=730;AF=0.0013699;RA=2387;AA=4;SR=1293|1094;SA=1|3;SB=0.25;AB=0;ABR=0;ABA=2;RUN=2;SNP;TS
+20	96923	.	C	A	99.0	PASS	NS=363;DP=2448;AC=20;AN=726;AF=0.027548;RA=2358;AA=85;SR=1286|1072;SA=56|29;SB=0.65882;AB=0.45385;ABR=59;ABA=71;RUN=2;SNP;TV
+20	96931	rs6052070	A	G	99.0	PASS	NS=365;DP=2424;AC=256;AN=730;AF=0.35068;RA=1586;AA=831;SR=882|704;SA=463|368;SB=0.55716;AB=0.50916;ABR=389;ABA=373;RUN=1;SNP;TS;CpG
+20	97048	.	G	T	0.0453	PASS	NS=367;DP=2268;AC=1;AN=734;AF=0.0013624;RA=2250;AA=9;SR=1094|1156;SA=2|7;SB=0.22222;AB=0.66667;ABR=2;ABA=1;RUN=2;SNP;TV
+20	97122	rs6515824	C	T	99.0	PASS	NS=366;DP=2087;AC=168;AN=732;AF=0.22951;RA=1606;AA=470;SR=818|788;SA=230|240;SB=0.48936;AB=0.49234;ABR=257;ABA=261;RUN=1;SNP;TS
+20	97227	.	A	C	87.6	PASS	NS=358;DP=1952;AC=2;AN=716;AF=0.0027933;RA=1912;AA=35;SR=1012|900;SA=33|2;SB=0.94286;AB=0.42857;ABR=6;ABA=8;RUN=2;SNP;TV
+20	97271	.	A	T	10.8	PASS	NS=367;DP=2260;AC=1;AN=734;AF=0.0013624;RA=2241;AA=3;SR=1067|1174;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	97285	.	T	C	0.442	PASS	NS=363;DP=2215;AC=1;AN=726;AF=0.0013774;RA=2169;AA=24;SR=1010|1159;SA=6|18;SB=0.25;AB=0.6;ABR=3;ABA=2;RUN=3;SNP;TS
+20	97371	.	G	A	99.0	PASS	NS=365;DP=2386;AC=16;AN=730;AF=0.021918;RA=2319;AA=54;SR=1350|969;SA=26|28;SB=0.48148;AB=0.48958;ABR=47;ABA=49;RUN=1;SNP;TS
+20	97394	rs6052094	A	G	99.0	PASS	NS=346;DP=2074;AC=185;AN=692;AF=0.26734;RA=1552;AA=509;SR=904|648;SA=280|229;SB=0.5501;AB=0.46933;ABR=176;ABA=199;RUN=2;SNP;TS;CpG
+20	97458	.	A	G	68.2	PASS	NS=365;DP=2315;AC=1;AN=730;AF=0.0013699;RA=2304;AA=7;SR=1121|1183;SA=3|4;SB=0.42857;AB=0.45455;ABR=5;ABA=6;RUN=2;SNP;TS
+20	97465	.	G	C	2.86	PASS	NS=365;DP=2309;AC=1;AN=730;AF=0.0013699;RA=2285;AA=9;SR=1111|1174;SA=1|8;SB=0.11111;AB=0.6;ABR=3;ABA=2;RUN=3;SNP;TV
+20	97526	.	C	G	0.0531	PASS	NS=370;DP=2381;AC=1;AN=740;AF=0.0013514;RA=2370;AA=2;SR=1223|1147;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	97564	.	T	G	0.0531	PASS	NS=369;DP=2445;AC=1;AN=738;AF=0.001355;RA=2425;AA=8;SR=1233|1192;SA=0|8;SB=0;AB=0.78571;ABR=11;ABA=3;RUN=1;SNP;TV
+20	97804	.	G	C	12.2	PASS	NS=367;DP=2119;AC=2;AN=734;AF=0.0027248;RA=2109;AA=4;SR=1004|1105;SA=3|1;SB=0.75;AB=0.6;ABR=6;ABA=4;RUN=1;SNP;TV
+20	97915	.	A	T	0.991	PASS	NS=359;DP=1872;AC=1;AN=718;AF=0.0013928;RA=1857;AA=5;SR=936|921;SA=1|4;SB=0.2;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	98008	.	T	C	99.0	PASS	NS=335;DP=1359;AC=19;AN=670;AF=0.028358;RA=1305;AA=48;SR=640|665;SA=24|24;SB=0.5;AB=0.48571;ABR=34;ABA=36;RUN=3;SNP;TS
+20	98061	.	G	T	0.0607	PASS	NS=331;DP=1432;AC=1;AN=662;AF=0.0015106;RA=1423;AA=5;SR=794|629;SA=3|2;SB=0.6;AB=0.9;ABR=18;ABA=2;RUN=1;SNP;TV
+20	98439	.	T	C	99.0	PASS	NS=369;DP=2319;AC=29;AN=738;AF=0.039295;RA=2221;AA=84;SR=1227|994;SA=55|29;SB=0.65476;AB=0.56627;ABR=94;ABA=71;RUN=1;SNP;TS
+20	98447	.	T	G	99.0	PASS	NS=371;DP=2416;AC=29;AN=742;AF=0.039084;RA=2311;AA=89;SR=1239|1072;SA=49|40;SB=0.55056;AB=0.52941;ABR=81;ABA=72;RUN=2;SNP;TV
+20	98491	.	C	T	99.0	PASS	NS=370;DP=2385;AC=2;AN=740;AF=0.0027027;RA=2364;AA=8;SR=1167|1197;SA=6|2;SB=0.75;AB=0.55556;ABR=10;ABA=8;RUN=1;SNP;TS
+20	98688	.	T	C	99.0	PASS	NS=362;DP=2160;AC=28;AN=724;AF=0.038674;RA=2090;AA=64;SR=1092|998;SA=29|35;SB=0.45312;AB=0.54839;ABR=68;ABA=55;RUN=2;SNP;TS;CpG
+20	98741	.	C	T	99.0	PASS	NS=367;DP=2469;AC=26;AN=734;AF=0.035422;RA=2377;AA=81;SR=1083|1294;SA=40|41;SB=0.49383;AB=0.51538;ABR=67;ABA=63;RUN=2;SNP;TS;CpG
+20	98792	.	G	C	99.0	PASS	NS=371;DP=2401;AC=32;AN=742;AF=0.043127;RA=2291;AA=92;SR=1124|1167;SA=41|51;SB=0.44565;AB=0.52632;ABR=80;ABA=70;RUN=1;SNP;TV
+20	98796	.	G	T	0.637	PASS	NS=369;DP=2424;AC=1;AN=738;AF=0.001355;RA=2407;AA=13;SR=1185|1222;SA=10|3;SB=0.76923;AB=0.72727;ABR=8;ABA=3;RUN=4;SNP;TV
+20	98905	.	T	C	0.0446	PASS	NS=368;DP=2477;AC=1;AN=736;AF=0.0013587;RA=2462;AA=9;SR=1319|1143;SA=3|6;SB=0.33333;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TS
+20	98908	.	A	T	6.25	PASS	NS=370;DP=2483;AC=1;AN=740;AF=0.0013514;RA=2471;AA=7;SR=1328|1143;SA=3|4;SB=0.42857;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	98930	rs6116135	G	A	99.0	PASS	NS=370;DP=2431;AC=159;AN=740;AF=0.21486;RA=1920;AA=502;SR=1041|879;SA=269|233;SB=0.53586;AB=0.54773;ABR=350;ABA=287;RUN=1;SNP;TS
+20	98957	.	A	G	99.0	PASS	NS=370;DP=2423;AC=2;AN=740;AF=0.0027027;RA=2404;AA=13;SR=1270|1134;SA=6|7;SB=0.46154;AB=0.41176;ABR=7;ABA=10;RUN=1;SNP;TS
+20	98991	.	T	C	4.43	PASS	NS=370;DP=2386;AC=1;AN=740;AF=0.0013514;RA=2377;AA=3;SR=1217|1160;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=3;SNP;TS
+20	99132	.	G	T	0.374	PASS	NS=371;DP=2502;AC=1;AN=742;AF=0.0013477;RA=2492;AA=6;SR=1292|1200;SA=3|3;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TV
+20	99200	.	C	G	47.2	PASS	NS=368;DP=2476;AC=1;AN=736;AF=0.0013587;RA=2464;AA=5;SR=1140|1324;SA=2|3;SB=0.4;AB=0.33333;ABR=2;ABA=4;RUN=1;SNP;TV
+20	99228	.	C	T	48.9	PASS	NS=368;DP=2404;AC=4;AN=736;AF=0.0054348;RA=2382;AA=12;SR=1087|1295;SA=5|7;SB=0.41667;AB=0.5;ABR=9;ABA=9;RUN=4;SNP;TS
+20	99318	.	G	T	0.264	PASS	NS=368;DP=2147;AC=1;AN=736;AF=0.0013587;RA=2135;AA=8;SR=914|1221;SA=6|2;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	99500	.	C	A	99.0	PASS	NS=366;DP=2130;AC=35;AN=732;AF=0.047814;RA=2048;AA=75;SR=792|1256;SA=26|49;SB=0.34667;AB=0.512;ABR=64;ABA=60;RUN=1;SNP;TV
+20	99554	.	C	A	5.17	PASS	NS=365;DP=2104;AC=1;AN=730;AF=0.0013699;RA=2095;AA=4;SR=846|1249;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	99563	.	T	C	0.153	PASS	NS=365;DP=2130;AC=1;AN=730;AF=0.0013699;RA=2126;AA=3;SR=906|1220;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	99612	.	A	G	1.43	PASS	NS=370;DP=2190;AC=1;AN=740;AF=0.0013514;RA=2185;AA=2;SR=1213|972;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TS
+20	99627	.	G	T	1.72	PASS	NS=369;DP=2210;AC=1;AN=738;AF=0.001355;RA=2203;AA=6;SR=1239|964;SA=3|3;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	99632	.	T	C	2.53	PASS	NS=369;DP=2206;AC=1;AN=738;AF=0.001355;RA=2197;AA=3;SR=1231|966;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	99653	.	C	A	0.0845	PASS	NS=366;DP=2296;AC=1;AN=732;AF=0.0013661;RA=2287;AA=5;SR=1195|1092;SA=3|2;SB=0.6;AB=0.77778;ABR=7;ABA=2;RUN=4;SNP;TV
+20	99667	.	C	T	99.0	PASS	NS=367;DP=2225;AC=5;AN=734;AF=0.006812;RA=2197;AA=21;SR=1101|1096;SA=9|12;SB=0.42857;AB=0.54545;ABR=24;ABA=20;RUN=1;SNP;TS
+20	99704	.	T	C	0.0612	PASS	NS=370;DP=2145;AC=1;AN=740;AF=0.0013514;RA=2141;AA=2;SR=997|1144;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	99734	.	C	T	0.0662	PASS	NS=366;DP=2113;AC=1;AN=732;AF=0.0013661;RA=2101;AA=6;SR=956|1145;SA=4|2;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	99801	.	G	A	99.0	PASS	NS=367;DP=1968;AC=88;AN=734;AF=0.11989;RA=1750;AA=214;SR=977|773;SA=103|111;SB=0.48131;AB=0.46021;ABR=133;ABA=154;RUN=1;SNP;TS
+20	99919	.	A	T	4.0	PASS	NS=359;DP=2099;AC=1;AN=718;AF=0.0013928;RA=2092;AA=2;SR=1038|1054;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	100030	.	G	T	2.4	PASS	NS=361;DP=1980;AC=1;AN=722;AF=0.001385;RA=1969;AA=9;SR=986|983;SA=6|3;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=3;SNP;TV
+20	100133	.	T	C	2.2	PASS	NS=359;DP=2041;AC=1;AN=718;AF=0.0013928;RA=2033;AA=3;SR=936|1097;SA=2|1;SB=0.66667;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TS
+20	100134	.	A	G	72.1	PASS	NS=360;DP=2052;AC=1;AN=720;AF=0.0013889;RA=2042;AA=5;SR=942|1100;SA=2|3;SB=0.4;AB=0.33333;ABR=2;ABA=4;RUN=1;SNP;TS
+20	100172	.	G	C	16.2	PASS	NS=356;DP=2127;AC=1;AN=712;AF=0.0014045;RA=2120;AA=2;SR=996|1124;SA=2|0;SB=1;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	100184	.	A	G	68.0	PASS	NS=360;DP=2141;AC=3;AN=720;AF=0.0041667;RA=2125;AA=12;SR=1021|1104;SA=4|8;SB=0.33333;AB=0.58824;ABR=10;ABA=7;RUN=1;SNP;TS;CpG
+20	100190	.	A	T	99.0	PASS	NS=360;DP=2144;AC=20;AN=720;AF=0.027778;RA=2093;AA=43;SR=1027|1066;SA=23|20;SB=0.53488;AB=0.56044;ABR=51;ABA=40;RUN=1;SNP;TV
+20	100272	rs6052354	C	T	99.0	PASS	NS=352;DP=1860;AC=85;AN=704;AF=0.12074;RA=1684;AA=174;SR=855|829;SA=90|84;SB=0.51724;AB=0.48826;ABR=104;ABA=109;RUN=6;SNP;TS
+20	100275	.	C	G	27.0	PASS	NS=354;DP=1879;AC=1;AN=708;AF=0.0014124;RA=1870;AA=5;SR=954|916;SA=2|3;SB=0.4;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TV
+20	100277	.	A	G	0.355	PASS	NS=351;DP=1863;AC=1;AN=702;AF=0.0014245;RA=1857;AA=3;SR=938|919;SA=0|3;SB=0;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TS;CpG
+20	100279	.	T	C	99.0	PASS	NS=349;DP=1846;AC=9;AN=698;AF=0.012894;RA=1829;AA=13;SR=926|903;SA=3|10;SB=0.23077;AB=0.52381;ABR=11;ABA=10;RUN=2;SNP;TS
+20	100308	.	A	G	5.47	PASS	NS=354;DP=1794;AC=1;AN=708;AF=0.0014124;RA=1781;AA=3;SR=814|967;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	100339	.	C	A	99.0	PASS	NS=356;DP=1834;AC=18;AN=712;AF=0.025281;RA=1785;AA=45;SR=760|1025;SA=16|29;SB=0.35556;AB=0.50667;ABR=38;ABA=37;RUN=2;SNP;TV
+20	100495	rs6052380	G	A	99.0	PASS	NS=359;DP=2056;AC=85;AN=718;AF=0.11838;RA=1866;AA=181;SR=948|918;SA=93|88;SB=0.51381;AB=0.548;ABR=137;ABA=113;RUN=1;SNP;TS
+20	100505	rs6037772	T	C	99.0	PASS	NS=357;DP=2026;AC=83;AN=714;AF=0.11625;RA=1853;AA=167;SR=909|944;SA=83|84;SB=0.49701;AB=0.57025;ABR=138;ABA=104;RUN=1;SNP;TS
+20	100515	.	T	A	1.58	PASS	NS=357;DP=1978;AC=1;AN=714;AF=0.0014006;RA=1971;AA=3;SR=933|1038;SA=0|3;SB=0;AB=0.77778;ABR=7;ABA=2;RUN=4;SNP;TV
+20	100537	.	C	A	8.5	PASS	NS=360;DP=1925;AC=1;AN=720;AF=0.0013889;RA=1910;AA=6;SR=851|1059;SA=4|2;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	100554	.	T	C	5.56	PASS	NS=361;DP=1910;AC=1;AN=722;AF=0.001385;RA=1902;AA=3;SR=827|1075;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	100564	.	T	C	0.454	PASS	NS=359;DP=1868;AC=1;AN=718;AF=0.0013928;RA=1865;AA=2;SR=825|1040;SA=1|1;SB=0.5;AB=0.81818;ABR=9;ABA=2;RUN=2;SNP;TS;CpG
+20	100569	.	A	G	0.0539	PASS	NS=353;DP=1836;AC=1;AN=706;AF=0.0014164;RA=1825;AA=3;SR=832|993;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TS
+20	100592	.	T	C	6.17	PASS	NS=350;DP=1763;AC=1;AN=700;AF=0.0014286;RA=1756;AA=3;SR=892|864;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	100645	.	C	T	99.0	PASS	NS=355;DP=1769;AC=2;AN=710;AF=0.0028169;RA=1753;AA=12;SR=929|824;SA=8|4;SB=0.66667;AB=0.42857;ABR=9;ABA=12;RUN=1;SNP;TS;CpG
+20	100678	.	C	T	99.0	PASS	NS=351;DP=1593;AC=77;AN=702;AF=0.10969;RA=1411;AA=177;SR=563|848;SA=177|0;SB=1;AB=0.69182;ABR=220;ABA=97;RUN=4;SNP;TS
+20	100699	rs6116236	C	T	99.0	PASS	NS=348;DP=1572;AC=178;AN=696;AF=0.25575;RA=1157;AA=387;SR=473|684;SA=178|209;SB=0.45995;AB=0.49265;ABR=201;ABA=204;RUN=2;SNP;TS
+20	100700	.	A	C	0.0548	PASS	NS=350;DP=1624;AC=1;AN=700;AF=0.0014286;RA=1609;AA=7;SR=721|888;SA=2|5;SB=0.28571;AB=0.5;ABR=1;ABA=1;RUN=4;SNP;TV
+20	100764	.	C	T	20.8	PASS	NS=353;DP=1810;AC=1;AN=706;AF=0.0014164;RA=1805;AA=3;SR=774|1031;SA=1|2;SB=0.33333;AB=0.5;ABR=3;ABA=3;RUN=1;SNP;TS
+20	100767	.	T	G	99.0	PASS	NS=355;DP=1827;AC=8;AN=710;AF=0.011268;RA=1795;AA=25;SR=765|1030;SA=6|19;SB=0.24;AB=0.45714;ABR=16;ABA=19;RUN=1;SNP;TV
+20	100816	.	A	G	1.13	PASS	NS=346;DP=1873;AC=1;AN=692;AF=0.0014451;RA=1867;AA=2;SR=836|1031;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	100854	.	T	A	93.6	PASS	NS=346;DP=1891;AC=1;AN=692;AF=0.0014451;RA=1877;AA=10;SR=914|963;SA=4|6;SB=0.4;AB=0.33333;ABR=4;ABA=8;RUN=2;SNP;TV
+20	100862	.	C	A	6.72	PASS	NS=347;DP=1913;AC=1;AN=694;AF=0.0014409;RA=1902;AA=4;SR=956|946;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	100881	.	T	C	0.499	PASS	NS=353;DP=1949;AC=1;AN=706;AF=0.0014164;RA=1943;AA=2;SR=1035|908;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	100904	.	T	C	4.63	PASS	NS=358;DP=1912;AC=1;AN=716;AF=0.0013966;RA=1906;AA=2;SR=1075|831;SA=1|1;SB=0.5;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	101020	.	T	C	1.07	PASS	NS=357;DP=1819;AC=1;AN=714;AF=0.0014006;RA=1807;AA=4;SR=962|845;SA=3|1;SB=0.75;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	101235	.	T	G	39.9	PASS	NS=365;DP=2094;AC=3;AN=730;AF=0.0041096;RA=2082;AA=8;SR=1042|1040;SA=4|4;SB=0.5;AB=0.41667;ABR=5;ABA=7;RUN=2;SNP;TV
+20	101355	.	T	C	99.0	PASS	NS=362;DP=2122;AC=25;AN=724;AF=0.03453;RA=2066;AA=51;SR=947|1119;SA=17|34;SB=0.33333;AB=0.58036;ABR=65;ABA=47;RUN=1;SNP;TS
+20	101362	rs6139361	G	A	99.0	PASS	NS=362;DP=2073;AC=86;AN=724;AF=0.11878;RA=1825;AA=242;SR=817|1008;SA=107|135;SB=0.44215;AB=0.54505;ABR=242;ABA=202;RUN=3;SNP;TS
+20	101437	.	C	T	99.0	PASS	NS=364;DP=1982;AC=21;AN=728;AF=0.028846;RA=1917;AA=58;SR=1001|916;SA=24|34;SB=0.41379;AB=0.46667;ABR=42;ABA=48;RUN=1;SNP;TS
+20	101449	.	A	G	99.0	PASS	NS=362;DP=1984;AC=1;AN=724;AF=0.0013812;RA=1971;AA=10;SR=1065|906;SA=5|5;SB=0.5;AB=0;ABR=0;ABA=10;RUN=1;SNP;TS
+20	101513	.	T	C	99.0	PASS	NS=364;DP=2010;AC=3;AN=728;AF=0.0041209;RA=1985;AA=11;SR=952|1033;SA=4|7;SB=0.36364;AB=0.47059;ABR=8;ABA=9;RUN=1;SNP;TS
+20	101515	.	G	A	25.8	PASS	NS=364;DP=1991;AC=1;AN=728;AF=0.0013736;RA=1979;AA=5;SR=946|1033;SA=3|2;SB=0.6;AB=0.5;ABR=4;ABA=4;RUN=2;SNP;TS
+20	101521	.	A	T	3.47	PASS	NS=365;DP=1956;AC=1;AN=730;AF=0.0013699;RA=1949;AA=3;SR=905|1044;SA=2|1;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	101567	.	A	G	31.0	PASS	NS=359;DP=1818;AC=1;AN=718;AF=0.0013928;RA=1808;AA=5;SR=875|933;SA=1|4;SB=0.2;AB=0.375;ABR=3;ABA=5;RUN=1;SNP;TS
+20	101590	.	C	A	0.0543	PASS	NS=355;DP=1773;AC=1;AN=710;AF=0.0014085;RA=1756;AA=9;SR=848|908;SA=1|8;SB=0.11111;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	101905	rs1342843	G	C	99.0	PASS	NS=370;DP=2159;AC=13;AN=740;AF=0.017568;RA=2107;AA=46;SR=1075|1032;SA=30|16;SB=0.65217;AB=0.46988;ABR=39;ABA=44;RUN=1;SNP;TV
+20	101918	.	C	T	99.0	PASS	NS=368;DP=2159;AC=29;AN=736;AF=0.039402;RA=2069;AA=83;SR=1068|1001;SA=46|37;SB=0.55422;AB=0.59296;ABR=118;ABA=80;RUN=3;SNP;TS
+20	102181	rs6052493	T	C	99.0	PASS	NS=370;DP=2299;AC=310;AN=740;AF=0.41892;RA=1354;AA=940;SR=740|614;SA=508|432;SB=0.54043;AB=0.51446;ABR=427;ABA=401;RUN=2;SNP;TS
+20	102203	rs6116301	T	C	99.0	PASS	NS=369;DP=2327;AC=7;AN=738;AF=0.0094851;RA=2305;AA=15;SR=1223|1082;SA=11|4;SB=0.73333;AB=0.72727;ABR=24;ABA=9;RUN=2;SNP;TS
+20	102205	.	A	G	7.9	PASS	NS=368;DP=2331;AC=2;AN=736;AF=0.0027174;RA=2314;AA=5;SR=1222|1092;SA=2|3;SB=0.4;AB=0.57143;ABR=4;ABA=3;RUN=1;SNP;TS
+20	102278	.	C	A	0.0803	PASS	NS=370;DP=2369;AC=1;AN=740;AF=0.0013514;RA=2353;AA=11;SR=1241|1112;SA=4|7;SB=0.36364;AB=0.76923;ABR=10;ABA=3;RUN=2;SNP;TV
+20	102312	.	A	G	39.1	PASS	NS=369;DP=2482;AC=1;AN=738;AF=0.001355;RA=2466;AA=6;SR=1292|1174;SA=3|3;SB=0.5;AB=0.63636;ABR=7;ABA=4;RUN=2;SNP;TS
+20	102387	.	C	A	0.0651	PASS	NS=372;DP=2764;AC=1;AN=744;AF=0.0013441;RA=2750;AA=8;SR=1316|1434;SA=3|5;SB=0.375;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	102441	.	T	C	99.0	PASS	NS=370;DP=2720;AC=18;AN=740;AF=0.024324;RA=2616;AA=92;SR=1328|1288;SA=36|56;SB=0.3913;AB=0.51075;ABR=95;ABA=91;RUN=1;SNP;TS
+20	102464	.	G	C	99.0	PASS	NS=368;DP=2753;AC=4;AN=736;AF=0.0054348;RA=2720;AA=13;SR=1339|1381;SA=9|4;SB=0.69231;AB=0.56667;ABR=17;ABA=13;RUN=1;SNP;TV
+20	102485	.	A	G	0.539	PASS	NS=372;DP=2911;AC=1;AN=744;AF=0.0013441;RA=2902;AA=4;SR=1393|1509;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	102510	.	C	T	0.0965	PASS	NS=368;DP=2818;AC=1;AN=736;AF=0.0013587;RA=2807;AA=3;SR=1294|1513;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS;CpG
+20	102511	.	G	A	0.0598	PASS	NS=369;DP=2815;AC=1;AN=738;AF=0.001355;RA=2803;AA=6;SR=1297|1506;SA=5|1;SB=0.83333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	102519	.	G	A	9.8	PASS	NS=369;DP=2741;AC=1;AN=738;AF=0.001355;RA=2734;AA=4;SR=1271|1463;SA=1|3;SB=0.25;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	102524	.	A	G	99.0	PASS	NS=370;DP=2710;AC=31;AN=740;AF=0.041892;RA=2605;AA=99;SR=1195|1410;SA=45|54;SB=0.45455;AB=0.54082;ABR=106;ABA=90;RUN=1;SNP;TS
+20	102631	.	G	A	2.6	PASS	NS=367;DP=2311;AC=1;AN=734;AF=0.0013624;RA=2298;AA=4;SR=1160|1138;SA=1|3;SB=0.25;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	102760	.	A	G	0.319	PASS	NS=371;DP=2530;AC=1;AN=742;AF=0.0013477;RA=2521;AA=5;SR=1100|1421;SA=1|4;SB=0.2;AB=0.83333;ABR=10;ABA=2;RUN=2;SNP;TS
+20	102799	rs6107455	G	A	99.0	PASS	NS=367;DP=2411;AC=188;AN=734;AF=0.25613;RA=1818;AA=585;SR=812|1006;SA=250|335;SB=0.42735;AB=0.49346;ABR=377;ABA=383;RUN=1;SNP;TS
+20	103002	.	G	A	59.3	PASS	NS=365;DP=2072;AC=1;AN=730;AF=0.0013699;RA=2051;AA=6;SR=1068|983;SA=3|3;SB=0.5;AB=0.33333;ABR=2;ABA=4;RUN=1;SNP;TS
+20	103003	.	C	G	0.107	PASS	NS=365;DP=2089;AC=1;AN=730;AF=0.0013699;RA=2079;AA=2;SR=1075|1004;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	103119	.	T	C	5.14	PASS	NS=362;DP=2079;AC=1;AN=724;AF=0.0013812;RA=2070;AA=2;SR=950|1120;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	103308	.	A	T	99.0	PASS	NS=367;DP=1956;AC=21;AN=734;AF=0.02861;RA=1908;AA=46;SR=920|988;SA=23|23;SB=0.5;AB=0.56061;ABR=37;ABA=29;RUN=1;SNP;TV
+20	103351	.	C	A	99.0	PASS	NS=362;DP=2013;AC=23;AN=724;AF=0.031768;RA=1954;AA=58;SR=1062|892;SA=37|21;SB=0.63793;AB=0.49438;ABR=44;ABA=45;RUN=4;SNP;TV
+20	103487	.	A	G	99.0	PASS	NS=367;DP=2018;AC=26;AN=734;AF=0.035422;RA=1949;AA=62;SR=873|1076;SA=26|36;SB=0.41935;AB=0.52577;ABR=51;ABA=46;RUN=1;SNP;TS
+20	103517	rs3968581	A	T	99.0	PASS	NS=362;DP=1991;AC=307;AN=724;AF=0.42403;RA=1246;AA=741;SR=604|642;SA=340|401;SB=0.45884;AB=0.49821;ABR=278;ABA=279;RUN=1;SNP;TV
+20	103565	.	A	G	31.2	PASS	NS=360;DP=2009;AC=1;AN=720;AF=0.0013889;RA=2002;AA=5;SR=1066|936;SA=3|2;SB=0.6;AB=0;ABR=0;ABA=4;RUN=1;SNP;TS
+20	103642	.	C	G	99.0	PASS	NS=361;DP=1999;AC=90;AN=722;AF=0.12465;RA=1791;AA=200;SR=906|885;SA=106|94;SB=0.53;AB=0.50545;ABR=139;ABA=134;RUN=1;SNP;TV
+20	103645	.	T	C	3.37	PASS	NS=362;DP=1984;AC=1;AN=724;AF=0.0013812;RA=1980;AA=3;SR=1009|971;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	103659	.	T	G	0.587	PASS	NS=355;DP=1968;AC=1;AN=710;AF=0.0014085;RA=1961;AA=6;SR=994|967;SA=2|4;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	103694	.	C	T	9.34	PASS	NS=360;DP=2012;AC=1;AN=720;AF=0.0013889;RA=2005;AA=2;SR=1039|966;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	103722	.	T	C	3.92	PASS	NS=365;DP=2168;AC=1;AN=730;AF=0.0013699;RA=2161;AA=4;SR=1157|1004;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	103762	.	G	A	5.05	PASS	NS=367;DP=2133;AC=1;AN=734;AF=0.0013624;RA=2122;AA=2;SR=1144|978;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	103813	.	G	A	99.0	PASS	NS=362;DP=1974;AC=23;AN=724;AF=0.031768;RA=1909;AA=59;SR=1009|900;SA=35|24;SB=0.59322;AB=0.58779;ABR=77;ABA=54;RUN=1;SNP;TS
+20	103826	.	T	C	1.89	PASS	NS=360;DP=1939;AC=1;AN=720;AF=0.0013889;RA=1930;AA=2;SR=993|937;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	104114	.	G	C	99.0	PASS	NS=361;DP=2017;AC=4;AN=722;AF=0.0055402;RA=2002;AA=12;SR=921|1081;SA=3|9;SB=0.25;AB=0.5;ABR=11;ABA=11;RUN=1;SNP;TV
+20	104292	.	A	G	0.304	PASS	NS=360;DP=2180;AC=1;AN=720;AF=0.0013889;RA=2177;AA=2;SR=1102|1075;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS;CpG
+20	104330	.	A	T	0.0694	PASS	NS=366;DP=2128;AC=1;AN=732;AF=0.0013661;RA=2121;AA=3;SR=1033|1088;SA=1|2;SB=0.33333;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	104367	.	T	G	0.273	PASS	NS=366;DP=2220;AC=1;AN=732;AF=0.0013661;RA=2206;AA=8;SR=1142|1064;SA=5|3;SB=0.625;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	104402	.	T	G	0.435	PASS	NS=362;DP=2078;AC=1;AN=724;AF=0.0013812;RA=2064;AA=10;SR=1163|901;SA=1|9;SB=0.1;AB=0.6;ABR=3;ABA=2;RUN=3;SNP;TV
+20	104520	rs6052623	A	G	99.0	PASS	NS=366;DP=2249;AC=90;AN=732;AF=0.12295;RA=1999;AA=247;SR=942|1057;SA=126|121;SB=0.51012;AB=0.52493;ABR=200;ABA=181;RUN=2;SNP;TS
+20	104532	.	C	T	9.69	PASS	NS=370;DP=2249;AC=1;AN=740;AF=0.0013514;RA=2239;AA=3;SR=1069|1170;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	104534	rs6116404	T	C	99.0	PASS	NS=371;DP=2257;AC=27;AN=742;AF=0.036388;RA=2156;AA=93;SR=1027|1129;SA=49|44;SB=0.52688;AB=0.51852;ABR=84;ABA=78;RUN=1;SNP;TS
+20	104604	.	T	C	99.0	PASS	NS=364;DP=2148;AC=30;AN=728;AF=0.041209;RA=2078;AA=61;SR=1065|1013;SA=29|32;SB=0.47541;AB=0.52632;ABR=50;ABA=42;RUN=1;SNP;TS;CpG
+20	104610	.	C	A	0.102	PASS	NS=365;DP=2131;AC=1;AN=730;AF=0.0013699;RA=2113;AA=14;SR=1080|1033;SA=4|10;SB=0.28571;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	104716	.	C	A	0.52	PASS	NS=368;DP=2299;AC=1;AN=736;AF=0.0013587;RA=2289;AA=7;SR=1070|1219;SA=2|5;SB=0.28571;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TV
+20	104808	.	G	T	13.4	PASS	NS=361;DP=2053;AC=1;AN=722;AF=0.001385;RA=2046;AA=3;SR=998|1048;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	104899	rs6116429	C	T	99.0	PASS	NS=358;DP=1718;AC=155;AN=716;AF=0.21648;RA=1331;AA=378;SR=675|656;SA=191|187;SB=0.50529;AB=0.49703;ABR=251;ABA=251;RUN=2;SNP;TS
+20	104902	.	T	A	0.0554	PASS	NS=358;DP=1715;AC=1;AN=716;AF=0.0013966;RA=1704;AA=4;SR=864|840;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	104959	.	G	C	4.15	PASS	NS=355;DP=1738;AC=1;AN=710;AF=0.0014085;RA=1728;AA=3;SR=833|895;SA=1|2;SB=0.33333;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TV
+20	105111	.	T	A	0.299	PASS	NS=353;DP=2057;AC=1;AN=706;AF=0.0014164;RA=2048;AA=2;SR=1090|958;SA=1|1;SB=0.5;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TV
+20	105131	.	T	C	0.314	PASS	NS=354;DP=1957;AC=1;AN=708;AF=0.0014124;RA=1953;AA=2;SR=1047|906;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	105239	.	A	C	7.74	PASS	NS=353;DP=1694;AC=1;AN=706;AF=0.0014164;RA=1682;AA=6;SR=893|789;SA=3|3;SB=0.5;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TV
+20	105359	.	G	T	85.9	PASS	NS=343;DP=1740;AC=3;AN=686;AF=0.0043732;RA=1730;AA=7;SR=780|950;SA=5|2;SB=0.71429;AB=0.5;ABR=7;ABA=7;RUN=1;SNP;TV
+20	105407	.	T	C	6.06	PASS	NS=347;DP=1867;AC=1;AN=694;AF=0.0014409;RA=1860;AA=2;SR=843|1017;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	105450	.	A	G	1.12	PASS	NS=353;DP=1846;AC=1;AN=706;AF=0.0014164;RA=1842;AA=2;SR=803|1039;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	105477	.	A	G	0.259	PASS	NS=350;DP=1929;AC=1;AN=700;AF=0.0014286;RA=1925;AA=2;SR=871|1054;SA=1|1;SB=0.5;AB=0.84615;ABR=11;ABA=2;RUN=1;SNP;TS
+20	105540	.	A	G	2.1	PASS	NS=348;DP=1862;AC=1;AN=696;AF=0.0014368;RA=1855;AA=4;SR=957|898;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	105930	.	G	T	11.5	PASS	NS=362;DP=2051;AC=1;AN=724;AF=0.0013812;RA=2038;AA=2;SR=1081|957;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	106063	.	T	C	0.044	PASS	NS=362;DP=2061;AC=1;AN=724;AF=0.0013812;RA=2041;AA=5;SR=905|1136;SA=3|2;SB=0.6;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	106098	.	A	G	99.0	PASS	NS=362;DP=1933;AC=14;AN=724;AF=0.019337;RA=1875;AA=55;SR=915|960;SA=20|35;SB=0.36364;AB=0.43023;ABR=37;ABA=49;RUN=1;SNP;TS
+20	106169	.	A	C	5.1	PASS	NS=363;DP=1990;AC=1;AN=726;AF=0.0013774;RA=1985;AA=4;SR=1081|904;SA=4|0;SB=1;AB=0;ABR=0;ABA=2;RUN=1;SNP;TV
+20	106204	.	A	G	14.8	PASS	NS=367;DP=1984;AC=2;AN=734;AF=0.0027248;RA=1967;AA=6;SR=965|1002;SA=1|5;SB=0.16667;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TS
+20	106371	.	C	A	27.8	PASS	NS=357;DP=1931;AC=1;AN=714;AF=0.0014006;RA=1919;AA=9;SR=1070|849;SA=4|5;SB=0.44444;AB=0.33333;ABR=2;ABA=4;RUN=5;SNP;TV
+20	106411	.	C	A	99.0	PASS	NS=353;DP=1798;AC=6;AN=706;AF=0.0084986;RA=1782;AA=15;SR=908|874;SA=8|7;SB=0.53333;AB=0.5;ABR=13;ABA=13;RUN=3;SNP;TV
+20	106550	.	T	C	0.176	PASS	NS=348;DP=1664;AC=1;AN=696;AF=0.0014368;RA=1657;AA=3;SR=738|919;SA=2|1;SB=0.66667;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS;CpG
+20	106604	.	T	C	0.162	PASS	NS=359;DP=1894;AC=1;AN=718;AF=0.0013928;RA=1887;AA=3;SR=817|1070;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS;CpG
+20	106609	.	A	G	22.0	PASS	NS=360;DP=1886;AC=1;AN=720;AF=0.0013889;RA=1872;AA=5;SR=801|1071;SA=3|2;SB=0.6;AB=0;ABR=0;ABA=3;RUN=1;SNP;TS
+20	106613	.	A	G	99.0	PASS	NS=363;DP=1933;AC=17;AN=726;AF=0.023416;RA=1878;AA=52;SR=795|1083;SA=23|29;SB=0.44231;AB=0.45833;ABR=44;ABA=52;RUN=1;SNP;TS
+20	106635	rs4813713	G	A	99.0	PASS	NS=364;DP=1892;AC=261;AN=728;AF=0.35852;RA=1263;AA=626;SR=506|757;SA=246|380;SB=0.39297;AB=0.48309;ABR=300;ABA=321;RUN=1;SNP;TS;CpG
+20	107011	.	A	G	33.8	PASS	NS=303;DP=833;AC=1;AN=606;AF=0.0016502;RA=827;AA=4;SR=348|479;SA=2|2;SB=0.5;AB=0.5;ABR=3;ABA=3;RUN=1;SNP;TS
+20	107071	.	G	A	0.0548	PASS	NS=297;DP=963;AC=1;AN=594;AF=0.0016835;RA=954;AA=4;SR=622|332;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	107118	.	C	T	0.0477	PASS	NS=310;DP=1008;AC=3;AN=620;AF=0.0048387;RA=1002;AA=3;SR=698|304;SA=2|1;SB=0.66667;AB=0;ABR=0;ABA=1;RUN=1;SNP;TS
+20	107120	.	T	G	11.1	PASS	NS=306;DP=986;AC=1;AN=612;AF=0.001634;RA=974;AA=7;SR=677|297;SA=2|5;SB=0.28571;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	107152	.	A	G	38.9	PASS	NS=307;DP=943;AC=5;AN=614;AF=0.0081433;RA=930;AA=9;SR=548|382;SA=6|3;SB=0.66667;AB=0.75;ABR=3;ABA=1;RUN=3;SNP;TS;CpG
+20	107160	rs8115570	C	G	99.0	PASS	NS=312;DP=969;AC=4;AN=624;AF=0.0064103;RA=951;AA=12;SR=546|405;SA=5|7;SB=0.41667;AB=0.4;ABR=6;ABA=9;RUN=2;SNP;TV
+20	107201	rs6116516	G	A	99.0	PASS	NS=317;DP=936;AC=24;AN=634;AF=0.037855;RA=883;AA=51;SR=486|397;SA=36|15;SB=0.70588;AB=0.40278;ABR=29;ABA=43;RUN=1;SNP;TS;CpG
+20	107273	.	C	A	0.855	PASS	NS=298;DP=985;AC=1;AN=596;AF=0.0016779;RA=978;AA=3;SR=689|289;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TV
+20	107457	rs6037980	T	C	99.0	PASS	NS=350;DP=1623;AC=91;AN=700;AF=0.13;RA=1430;AA=185;SR=730|700;SA=101|84;SB=0.54595;AB=0.52964;ABR=134;ABA=117;RUN=1;SNP;TS
+20	107563	.	T	G	1.01	PASS	NS=353;DP=1642;AC=1;AN=706;AF=0.0014164;RA=1604;AA=29;SR=596|1008;SA=25|4;SB=0.86207;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TV
+20	107613	rs6037984	T	G	99.0	PASS	NS=350;DP=1383;AC=68;AN=700;AF=0.097143;RA=1287;AA=95;SR=532|755;SA=36|59;SB=0.37895;AB=0.58621;ABR=68;ABA=48;RUN=1;SNP;TV
+20	107682	.	T	C	1.66	PASS	NS=328;DP=1188;AC=1;AN=656;AF=0.0015244;RA=1174;AA=7;SR=513|661;SA=6|1;SB=0.85714;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TS
+20	107739	.	C	T	19.1	PASS	NS=309;DP=939;AC=1;AN=618;AF=0.0016181;RA=931;AA=4;SR=333|598;SA=2|2;SB=0.5;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TS;CpG
+20	107955	.	C	T	0.385	PASS	NS=353;DP=1950;AC=2;AN=706;AF=0.0028329;RA=1935;AA=7;SR=1127|808;SA=4|3;SB=0.57143;AB=0.76923;ABR=10;ABA=3;RUN=2;SNP;TS
+20	107972	.	T	C	8.26	PASS	NS=356;DP=1989;AC=1;AN=712;AF=0.0014045;RA=1981;AA=3;SR=1113|868;SA=2|1;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	107980	.	T	C	3.5	PASS	NS=353;DP=2021;AC=1;AN=706;AF=0.0014164;RA=2005;AA=6;SR=1111|894;SA=3|3;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	107995	.	A	G	0.878	PASS	NS=353;DP=2018;AC=1;AN=706;AF=0.0014164;RA=2007;AA=2;SR=1100|907;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	108012	.	A	C	0.159	PASS	NS=352;DP=1969;AC=1;AN=704;AF=0.0014205;RA=1957;AA=8;SR=1101|856;SA=6|2;SB=0.75;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	108015	.	T	C	6.58	PASS	NS=353;DP=1948;AC=1;AN=706;AF=0.0014164;RA=1941;AA=3;SR=1097|844;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	108017	.	C	T	0.235	PASS	NS=355;DP=1935;AC=1;AN=710;AF=0.0014085;RA=1924;AA=4;SR=1088|836;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=5;SNP;TS
+20	108135	.	G	A	0.105	PASS	NS=359;DP=1667;AC=1;AN=718;AF=0.0013928;RA=1654;AA=4;SR=1019|635;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	108187	rs6038013	A	G	99.0	PASS	NS=357;DP=1712;AC=83;AN=714;AF=0.11625;RA=1508;AA=195;SR=874|634;SA=103|92;SB=0.52821;AB=0.54895;ABR=157;ABA=128;RUN=1;SNP;TS
+20	108192	.	G	A	99.0	PASS	NS=359;DP=1741;AC=3;AN=718;AF=0.0041783;RA=1721;AA=14;SR=975|746;SA=7|7;SB=0.5;AB=0.33333;ABR=6;ABA=12;RUN=4;SNP;TS
+20	108286	rs6116576	T	G	99.0	PASS	NS=360;DP=1849;AC=159;AN=720;AF=0.22083;RA=1402;AA=404;SR=743|659;SA=205|199;SB=0.50743;AB=0.46593;ABR=253;ABA=274;RUN=1;SNP;TV
+20	108328	rs1954267	A	C	99.0	PASS	NS=362;DP=2007;AC=628;AN=724;AF=0.8674;RA=315;AA=1690;SR=139|176;SA=829|861;SB=0.49053;AB=0.52174;ABR=204;ABA=187;RUN=1;SNP;TV
+20	108333	.	G	A	3.94	PASS	NS=360;DP=2056;AC=1;AN=720;AF=0.0013889;RA=2044;AA=5;SR=980|1064;SA=3|2;SB=0.6;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	108642	.	T	C	0.532	PASS	NS=216;DP=749;AC=1;AN=432;AF=0.0023148;RA=741;AA=3;SR=201|540;SA=0|3;SB=0;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS;CpG
+20	108711	.	A	C	99.0	PASS	NS=227;DP=741;AC=10;AN=454;AF=0.022026;RA=723;AA=15;SR=265|458;SA=7|8;SB=0.46667;AB=0.51724;ABR=15;ABA=14;RUN=1;SNP;TV
+20	108793	.	C	G	68.9	PASS	NS=193;DP=364;AC=8;AN=386;AF=0.020725;RA=352;AA=10;SR=228|124;SA=6|4;SB=0.6;AB=0.57895;ABR=11;ABA=8;RUN=1;SNP;TV
+20	108889	.	G	C	99.0	PASS	NS=353;DP=1305;AC=22;AN=706;AF=0.031161;RA=1259;AA=38;SR=644|615;SA=22|16;SB=0.57895;AB=0.5;ABR=21;ABA=21;RUN=2;SNP;TV
+20	108949	rs6053004	T	G	99.0	PASS	NS=329;DP=1082;AC=61;AN=658;AF=0.092705;RA=988;AA=92;SR=653|335;SA=70|22;SB=0.76087;AB=0.53;ABR=53;ABA=47;RUN=1;SNP;TV
+20	108958	rs34635961	A	C	99.0	PASS	NS=324;DP=1013;AC=125;AN=648;AF=0.1929;RA=809;AA=201;SR=551|258;SA=141|60;SB=0.70149;AB=0.5503;ABR=93;ABA=75;RUN=2;SNP;TV
+20	109043	.	G	T	13.5	PASS	NS=342;DP=1318;AC=1;AN=684;AF=0.001462;RA=1299;AA=4;SR=862|437;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	109213	.	A	C	37.3	PASS	NS=366;DP=1810;AC=1;AN=732;AF=0.0013661;RA=1803;AA=4;SR=998|805;SA=3|1;SB=0.75;AB=0.2;ABR=1;ABA=4;RUN=1;SNP;TV
+20	109258	.	T	C	3.83	PASS	NS=370;DP=2046;AC=1;AN=740;AF=0.0013514;RA=2039;AA=3;SR=1134|905;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	109272	rs6038037	C	G	99.0	PASS	NS=367;DP=2020;AC=90;AN=734;AF=0.12262;RA=1774;AA=241;SR=983|791;SA=127|114;SB=0.52697;AB=0.50142;ABR=177;ABA=175;RUN=2;SNP;TV
+20	109273	.	T	A	7.99	PASS	NS=367;DP=2018;AC=1;AN=734;AF=0.0013624;RA=2012;AA=2;SR=1110|902;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	109288	rs6053032	G	C	99.0	PASS	NS=364;DP=1921;AC=90;AN=728;AF=0.12363;RA=1686;AA=221;SR=898|788;SA=120|101;SB=0.54299;AB=0.51133;ABR=158;ABA=148;RUN=1;SNP;TV
+20	109358	.	T	C	0.707	PASS	NS=358;DP=2101;AC=1;AN=716;AF=0.0013966;RA=2093;AA=5;SR=1099|994;SA=4|1;SB=0.8;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	109377	rs11700281	A	C	99.0	PASS	NS=361;DP=2239;AC=21;AN=722;AF=0.029086;RA=2161;AA=75;SR=1073|1088;SA=46|29;SB=0.61333;AB=0.49635;ABR=68;ABA=68;RUN=2;SNP;TV
+20	109385	.	A	G	1.51	PASS	NS=363;DP=2269;AC=1;AN=726;AF=0.0013774;RA=2254;AA=8;SR=1091|1163;SA=5|3;SB=0.625;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS;CpG
+20	109422	.	T	A	99.0	PASS	NS=366;DP=2242;AC=24;AN=732;AF=0.032787;RA=2159;AA=76;SR=1039|1120;SA=30|46;SB=0.39474;AB=0.48387;ABR=60;ABA=64;RUN=1;SNP;TV
+20	109440	.	T	C	0.386	PASS	NS=362;DP=2222;AC=1;AN=724;AF=0.0013812;RA=2218;AA=3;SR=1057|1161;SA=1|2;SB=0.33333;AB=0.77778;ABR=7;ABA=2;RUN=3;SNP;TS
+20	109575	.	A	G	0.588	PASS	NS=364;DP=2020;AC=1;AN=728;AF=0.0013736;RA=2008;AA=4;SR=931|1077;SA=3|1;SB=0.75;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	109582	.	T	G	23.2	PASS	NS=362;DP=1967;AC=3;AN=724;AF=0.0041436;RA=1957;AA=6;SR=907|1050;SA=3|3;SB=0.5;AB=0.58333;ABR=7;ABA=5;RUN=1;SNP;TV
+20	109707	.	G	A	0.971	PASS	NS=323;DP=1467;AC=1;AN=646;AF=0.001548;RA=1455;AA=3;SR=669|786;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	109725	.	T	C	0.908	PASS	NS=336;DP=1492;AC=1;AN=672;AF=0.0014881;RA=1479;AA=7;SR=670|809;SA=6|1;SB=0.85714;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	109736	.	T	C	0.074	PASS	NS=342;DP=1489;AC=1;AN=684;AF=0.001462;RA=1478;AA=5;SR=680|798;SA=4|1;SB=0.8;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	109783	.	T	C	99.0	PASS	NS=342;DP=1544;AC=26;AN=684;AF=0.038012;RA=1472;AA=66;SR=641|831;SA=28|38;SB=0.42424;AB=0.46364;ABR=51;ABA=57;RUN=2;SNP;TS
+20	109889	.	T	C	0.545	PASS	NS=365;DP=2083;AC=1;AN=730;AF=0.0013699;RA=2077;AA=4;SR=1096|981;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	109901	.	A	G	99.0	PASS	NS=364;DP=2112;AC=28;AN=728;AF=0.038462;RA=2028;AA=78;SR=1064|964;SA=39|39;SB=0.5;AB=0.46479;ABR=66;ABA=74;RUN=1;SNP;TS
+20	109933	.	G	A	0.166	PASS	NS=357;DP=1915;AC=1;AN=714;AF=0.0014006;RA=1908;AA=3;SR=1017|891;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TS
+20	109947	.	T	A	4.68	PASS	NS=352;DP=1833;AC=2;AN=704;AF=0.0028409;RA=1822;AA=4;SR=950|872;SA=1|3;SB=0.25;AB=0.5;ABR=3;ABA=3;RUN=2;SNP;TV
+20	109997	.	C	T	0.0475	PASS	NS=346;DP=1655;AC=1;AN=692;AF=0.0014451;RA=1639;AA=11;SR=790|849;SA=10|1;SB=0.90909;AB=0.5;ABR=3;ABA=3;RUN=8;SNP;TS
+20	110058	rs6053093	G	C	99.0	PASS	NS=338;DP=1651;AC=146;AN=676;AF=0.21598;RA=1306;AA=340;SR=717|589;SA=189|151;SB=0.55588;AB=0.4978;ABR=226;ABA=226;RUN=1;SNP;TV
+20	110082	.	A	G	99.0	PASS	NS=337;DP=1696;AC=5;AN=674;AF=0.0074184;RA=1677;AA=14;SR=1008|669;SA=5|9;SB=0.35714;AB=0.47826;ABR=11;ABA=12;RUN=1;SNP;TS
+20	110098	rs6053101	A	G	99.0	PASS	NS=347;DP=1831;AC=242;AN=694;AF=0.3487;RA=1250;AA=577;SR=767|483;SA=353|224;SB=0.61179;AB=0.51826;ABR=298;ABA=277;RUN=3;SNP;TS
+20	110124	.	T	C	0.105	PASS	NS=365;DP=2096;AC=1;AN=730;AF=0.0013699;RA=2091;AA=3;SR=1273|818;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS;CpG
+20	110234	.	G	A	0.759	PASS	NS=350;DP=1744;AC=1;AN=700;AF=0.0014286;RA=1727;AA=4;SR=739|988;SA=3|1;SB=0.75;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	110315	.	T	C	0.0966	PASS	NS=337;DP=1589;AC=1;AN=674;AF=0.0014837;RA=1583;AA=3;SR=729|854;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	110366	.	C	A	99.0	PASS	NS=340;DP=1634;AC=7;AN=680;AF=0.010294;RA=1602;AA=28;SR=724|878;SA=18|10;SB=0.64286;AB=0.39474;ABR=15;ABA=23;RUN=3;SNP;TV
+20	110404	.	G	A	26.7	PASS	NS=351;DP=1839;AC=1;AN=702;AF=0.0014245;RA=1826;AA=5;SR=727|1099;SA=4|1;SB=0.8;AB=0.625;ABR=5;ABA=3;RUN=1;SNP;TS
+20	110417	.	G	A	7.25	PASS	NS=363;DP=1934;AC=1;AN=726;AF=0.0013774;RA=1923;AA=4;SR=782|1141;SA=0|4;SB=0;AB=0;ABR=0;ABA=2;RUN=1;SNP;TS
+20	110427	.	A	G	0.108	PASS	NS=364;DP=2009;AC=1;AN=728;AF=0.0013736;RA=2000;AA=3;SR=826|1174;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	110442	.	C	A	9.88	PASS	NS=367;DP=2074;AC=1;AN=734;AF=0.0013624;RA=2060;AA=5;SR=845|1215;SA=3|2;SB=0.6;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	110520	.	A	G	8.32	PASS	NS=351;DP=1771;AC=1;AN=702;AF=0.0014245;RA=1759;AA=3;SR=809|950;SA=2|1;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	110536	.	T	C	55.6	PASS	NS=359;DP=1709;AC=1;AN=718;AF=0.0013928;RA=1697;AA=6;SR=784|913;SA=4|2;SB=0.66667;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TS;CpG
+20	110564	.	T	C	1.51	PASS	NS=360;DP=1650;AC=1;AN=720;AF=0.0013889;RA=1637;AA=5;SR=750|887;SA=3|2;SB=0.6;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TS
+20	110702	rs8124420	C	T	99.0	PASS	NS=244;DP=491;AC=104;AN=488;AF=0.21311;RA=368;AA=102;SR=39|329;SA=6|96;SB=0.058824;AB=0.50617;ABR=41;ABA=38;RUN=1;SNP;TS;CpG
+20	110773	.	G	A	0.095	PASS	NS=223;DP=443;AC=18;AN=446;AF=0.040359;RA=425;AA=14;SR=61|364;SA=3|11;SB=0.21429;AB=0.57895;ABR=11;ABA=7;RUN=2;SNP;TS;CpG
+20	110875	rs57572545	C	T	99.0	PASS	NS=165;DP=461;AC=14;AN=330;AF=0.042424;RA=439;AA=21;SR=7|432;SA=0|21;SB=0;AB=0.52941;ABR=18;ABA=16;RUN=2;SNP;TS;CpG
+20	110970	rs13045727	G	A	99.0	PASS	NS=88;DP=160;AC=37;AN=176;AF=0.21023;RA=125;AA=32;SR=6|119;SA=0|32;SB=0;AB=0.54545;ABR=12;ABA=9;RUN=1;SNP;TS;CpG
+20	110976	.	G	A	67.8	PASS	NS=80;DP=137;AC=6;AN=160;AF=0.0375;RA=127;AA=8;SR=4|123;SA=0|8;SB=0;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS;CpG
+20	110979	rs8118833	A	G	99.0	PASS	NS=41;DP=61;AC=39;AN=82;AF=0.47561;RA=29;AA=30;SR=4|25;SA=0|30;SB=0;AB=0.375;ABR=3;ABA=4;RUN=1;SNP;TS
+20	111531	.	G	A	0.0614	PASS	NS=6;DP=8;AC=4;AN=12;AF=0.33333;RA=3;AA=4;SR=0|3;SA=0|4;SB=0;AB=0;ABR=0;ABA=0;RUN=7;SNP;TS
+20	116405	rs6107677	G	A	49.6	PASS	NS=55;DP=69;AC=26;AN=110;AF=0.23636;RA=52;AA=16;SR=49|3;SA=16|0;SB=1;AB=0;ABR=0;ABA=0;RUN=2;SNP;TS
+20	116545	rs6116924	G	A	95.2	PASS	NS=65;DP=84;AC=19;AN=130;AF=0.14615;RA=70;AA=13;SR=67|3;SA=13|0;SB=1;AB=0.5;ABR=3;ABA=3;RUN=1;SNP;TS;CpG
+20	116652	.	A	T	0.615	PASS	NS=305;DP=848;AC=1;AN=610;AF=0.0016393;RA=842;AA=3;SR=602|240;SA=3|0;SB=1;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	116787	rs6053657	A	G	99.0	PASS	NS=293;DP=885;AC=195;AN=586;AF=0.33276;RA=619;AA=263;SR=450|169;SA=196|67;SB=0.74525;AB=0.52709;ABR=107;ABA=95;RUN=2;SNP;TS;CpG
+20	116986	.	G	T	0.068	PASS	NS=200;DP=396;AC=1;AN=400;AF=0.0025;RA=385;AA=4;SR=239|146;SA=0|4;SB=0;AB=0.5;ABR=1;ABA=1;RUN=1;SNP;TV
+20	117254	.	T	C	99.0	PASS	NS=360;DP=1886;AC=3;AN=720;AF=0.0041667;RA=1869;AA=10;SR=1183|686;SA=6|4;SB=0.6;AB=0.6087;ABR=14;ABA=9;RUN=1;SNP;TS
+20	117290	.	T	G	99.0	PASS	NS=358;DP=1981;AC=49;AN=716;AF=0.068436;RA=1888;AA=79;SR=1178|710;SA=41|38;SB=0.51899;AB=0.7807;ABR=267;ABA=74;RUN=2;SNP;TV
+20	117305	.	T	C	3.02	PASS	NS=359;DP=2077;AC=1;AN=718;AF=0.0013928;RA=2064;AA=3;SR=1224|840;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	117312	.	G	A	0.499	PASS	NS=364;DP=2121;AC=3;AN=728;AF=0.0041209;RA=2108;AA=8;SR=1235|873;SA=5|3;SB=0.625;AB=0.7619;ABR=16;ABA=5;RUN=2;SNP;TS
+20	117329	.	T	C	6.59	PASS	NS=361;DP=2185;AC=1;AN=722;AF=0.001385;RA=2178;AA=2;SR=1178|1000;SA=1|1;SB=0.5;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	117475	.	T	C	1.49	PASS	NS=367;DP=2292;AC=1;AN=734;AF=0.0013624;RA=2284;AA=4;SR=1049|1235;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS;CpG
+20	117575	.	A	G	0.598	PASS	NS=358;DP=2097;AC=1;AN=716;AF=0.0013966;RA=2089;AA=3;SR=957|1132;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TS;CpG
+20	117618	.	T	G	0.0451	PASS	NS=366;DP=2178;AC=1;AN=732;AF=0.0013661;RA=2162;AA=10;SR=1020|1142;SA=8|2;SB=0.8;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TV
+20	117683	.	G	C	0.218	PASS	NS=359;DP=2011;AC=2;AN=718;AF=0.0027855;RA=1997;AA=5;SR=926|1071;SA=3|2;SB=0.6;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TV
+20	117685	.	T	A	0.339	PASS	NS=360;DP=2018;AC=1;AN=720;AF=0.0013889;RA=2009;AA=2;SR=939|1070;SA=1|1;SB=0.5;AB=0.83333;ABR=10;ABA=2;RUN=2;SNP;TV
+20	117719	.	T	C	99.0	PASS	NS=363;DP=2041;AC=1;AN=726;AF=0.0013774;RA=2030;AA=8;SR=948|1082;SA=7|1;SB=0.875;AB=0.36364;ABR=4;ABA=7;RUN=2;SNP;TS
+20	117742	.	T	A	0.194	PASS	NS=361;DP=1998;AC=1;AN=722;AF=0.001385;RA=1990;AA=4;SR=956|1034;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	117749	.	C	G	8.36	PASS	NS=360;DP=1983;AC=1;AN=720;AF=0.0013889;RA=1974;AA=4;SR=956|1018;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	117769	.	A	G	3.93	PASS	NS=358;DP=1977;AC=1;AN=716;AF=0.0013966;RA=1968;AA=4;SR=942|1026;SA=1|3;SB=0.25;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	117770	.	C	T	1.74	PASS	NS=359;DP=1977;AC=1;AN=718;AF=0.0013928;RA=1969;AA=2;SR=938|1031;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	117892	.	C	T	99.0	PASS	NS=363;DP=2099;AC=4;AN=726;AF=0.0055096;RA=2082;AA=14;SR=1169|913;SA=6|8;SB=0.42857;AB=0.56667;ABR=17;ABA=13;RUN=1;SNP;TS;CpG
+20	117925	.	G	C	3.85	PASS	NS=367;DP=2130;AC=1;AN=734;AF=0.0013624;RA=2121;AA=2;SR=1246|875;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	117968	.	G	A	69.7	PASS	NS=362;DP=2113;AC=1;AN=724;AF=0.0013812;RA=2094;AA=9;SR=1143|951;SA=6|3;SB=0.66667;AB=0.33333;ABR=3;ABA=6;RUN=2;SNP;TS
+20	117971	.	T	C	0.191	PASS	NS=361;DP=2106;AC=1;AN=722;AF=0.001385;RA=2096;AA=4;SR=1139|957;SA=3|1;SB=0.75;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS;CpG
+20	118008	rs59748275	G	A	99.0	PASS	NS=369;DP=2249;AC=98;AN=738;AF=0.13279;RA=1978;AA=264;SR=1025|953;SA=161|103;SB=0.60985;AB=0.51459;ABR=194;ABA=183;RUN=1;SNP;TS
+20	118034	.	A	G	43.1	PASS	NS=368;DP=2280;AC=1;AN=736;AF=0.0013587;RA=2262;AA=8;SR=1177|1085;SA=2|6;SB=0.25;AB=0.63636;ABR=7;ABA=4;RUN=1;SNP;TS
+20	118087	rs57860644	A	G	99.0	PASS	NS=366;DP=2284;AC=95;AN=732;AF=0.12978;RA=1966;AA=308;SR=1170|796;SA=194|114;SB=0.62987;AB=0.51454;ABR=230;ABA=214;RUN=1;SNP;TS;CpG
+20	118150	rs58312283	A	G	99.0	PASS	NS=366;DP=2270;AC=96;AN=732;AF=0.13115;RA=1946;AA=312;SR=1208|738;SA=191|121;SB=0.61218;AB=0.50302;ABR=250;ABA=246;RUN=1;SNP;TS;CpG
+20	118166	.	C	T	75.1	PASS	NS=369;DP=2290;AC=1;AN=738;AF=0.001355;RA=2268;AA=8;SR=1313|955;SA=2|6;SB=0.25;AB=0.14286;ABR=1;ABA=6;RUN=1;SNP;TS
+20	118169	.	T	C	0.287	PASS	NS=369;DP=2281;AC=1;AN=738;AF=0.001355;RA=2254;AA=14;SR=1275|979;SA=9|5;SB=0.64286;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	118222	.	A	G	99.0	PASS	NS=367;DP=2462;AC=20;AN=734;AF=0.027248;RA=2368;AA=84;SR=1080|1288;SA=41|43;SB=0.4881;AB=0.47134;ABR=74;ABA=82;RUN=1;SNP;TS;CpG
+20	118249	.	C	A	2.99	PASS	NS=369;DP=2568;AC=1;AN=738;AF=0.001355;RA=2555;AA=6;SR=1170|1385;SA=3|3;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	118252	.	T	C	41.3	PASS	NS=369;DP=2588;AC=1;AN=738;AF=0.001355;RA=2562;AA=10;SR=1173|1389;SA=6|4;SB=0.6;AB=0.57143;ABR=4;ABA=3;RUN=1;SNP;TS
+20	118410	.	T	C	99.0	PASS	NS=366;DP=2417;AC=3;AN=732;AF=0.0040984;RA=2365;AA=26;SR=1156|1209;SA=17|9;SB=0.65385;AB=0.52174;ABR=12;ABA=11;RUN=1;SNP;TS
+20	118477	.	G	C	40.1	PASS	NS=368;DP=2524;AC=1;AN=736;AF=0.0013587;RA=2501;AA=9;SR=1136|1365;SA=4|5;SB=0.44444;AB=0.55556;ABR=5;ABA=4;RUN=1;SNP;TV
+20	118525	.	T	A	0.143	PASS	NS=369;DP=2559;AC=1;AN=738;AF=0.001355;RA=2528;AA=5;SR=1373|1155;SA=3|2;SB=0.6;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	118535	.	G	A	99.0	PASS	NS=370;DP=2547;AC=25;AN=740;AF=0.033784;RA=2432;AA=98;SR=1401|1031;SA=47|51;SB=0.47959;AB=0.51872;ABR=97;ABA=89;RUN=1;SNP;TS;CpG
+20	118618	.	C	T	1.78	PASS	NS=367;DP=2563;AC=1;AN=734;AF=0.0013624;RA=2546;AA=3;SR=1375|1171;SA=1|2;SB=0.33333;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	118657	.	C	T	0.168	PASS	NS=368;DP=2612;AC=1;AN=736;AF=0.0013587;RA=2602;AA=3;SR=1428|1174;SA=2|1;SB=0.66667;AB=0.85714;ABR=12;ABA=2;RUN=1;SNP;TS
+20	118780	.	T	C	0.605	PASS	NS=368;DP=2715;AC=1;AN=736;AF=0.0013587;RA=2696;AA=6;SR=1421|1275;SA=1|5;SB=0.16667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	118803	.	C	T	2.66	PASS	NS=370;DP=2742;AC=1;AN=740;AF=0.0013514;RA=2728;AA=4;SR=1422|1306;SA=2|2;SB=0.5;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TS
+20	118878	.	C	A	4.89	PASS	NS=371;DP=2432;AC=1;AN=742;AF=0.0013477;RA=2419;AA=6;SR=1178|1241;SA=4|2;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	118954	.	G	A	0.29	PASS	NS=357;DP=2361;AC=3;AN=714;AF=0.0042017;RA=2337;AA=8;SR=1048|1289;SA=4|4;SB=0.5;AB=0.33333;ABR=2;ABA=4;RUN=2;SNP;TS
+20	118963	.	C	T	0.62	PASS	NS=359;DP=2420;AC=1;AN=718;AF=0.0013928;RA=2411;AA=4;SR=1067|1344;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	118973	.	G	C	1.48	PASS	NS=365;DP=2459;AC=2;AN=730;AF=0.0027397;RA=2422;AA=13;SR=1098|1324;SA=7|6;SB=0.53846;AB=0.55556;ABR=5;ABA=4;RUN=1;SNP;TV
+20	119005	.	A	C	0.0651	PASS	NS=368;DP=2535;AC=1;AN=736;AF=0.0013587;RA=2503;AA=21;SR=1147|1356;SA=19|2;SB=0.90476;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	119035	.	G	C	1.82	PASS	NS=366;DP=2461;AC=1;AN=732;AF=0.0013661;RA=2443;AA=8;SR=1160|1283;SA=7|1;SB=0.875;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	119056	.	A	C	99.0	PASS	NS=368;DP=2408;AC=22;AN=736;AF=0.029891;RA=2343;AA=61;SR=1089|1254;SA=30|31;SB=0.4918;AB=0.57895;ABR=77;ABA=55;RUN=4;SNP;TV
+20	119085	.	G	T	11.6	PASS	NS=369;DP=2362;AC=1;AN=738;AF=0.001355;RA=2353;AA=3;SR=1098|1255;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	119295	.	C	T	5.3	PASS	NS=370;DP=2159;AC=1;AN=740;AF=0.0013514;RA=2150;AA=7;SR=909|1241;SA=3|4;SB=0.42857;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	119420	.	A	G	2.58	PASS	NS=365;DP=2001;AC=1;AN=730;AF=0.0013699;RA=1996;AA=3;SR=955|1041;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS;CpG
+20	119421	.	A	G	72.7	PASS	NS=366;DP=2005;AC=3;AN=732;AF=0.0040984;RA=1990;AA=10;SR=951|1039;SA=5|5;SB=0.5;AB=0.52941;ABR=9;ABA=8;RUN=1;SNP;TS
+20	119496	.	C	A	0.46	PASS	NS=355;DP=1848;AC=1;AN=710;AF=0.0014085;RA=1840;AA=5;SR=837|1003;SA=2|3;SB=0.4;AB=0.77778;ABR=7;ABA=2;RUN=5;SNP;TV
+20	119518	.	C	T	0.149	PASS	NS=356;DP=1941;AC=1;AN=712;AF=0.0014045;RA=1932;AA=2;SR=900|1032;SA=1|1;SB=0.5;AB=0.85714;ABR=12;ABA=2;RUN=3;SNP;TS
+20	119534	.	A	G	99.0	PASS	NS=360;DP=2109;AC=39;AN=720;AF=0.054167;RA=1989;AA=114;SR=879|1110;SA=47|67;SB=0.41228;AB=0.47396;ABR=91;ABA=101;RUN=3;SNP;TS
+20	119596	.	A	G	99.0	PASS	NS=366;DP=2103;AC=39;AN=732;AF=0.053279;RA=2004;AA=97;SR=874|1130;SA=41|56;SB=0.42268;AB=0.54706;ABR=93;ABA=76;RUN=1;SNP;TS
+20	119599	.	A	T	4.27	PASS	NS=365;DP=2081;AC=1;AN=730;AF=0.0013699;RA=2067;AA=5;SR=906|1161;SA=4|1;SB=0.8;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	119714	.	G	A	0.547	PASS	NS=314;DP=1079;AC=1;AN=628;AF=0.0015924;RA=1068;AA=6;SR=496|572;SA=2|4;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS;CpG
+20	119730	rs6053859	A	G	99.0	PASS	NS=308;DP=1035;AC=49;AN=616;AF=0.079545;RA=956;AA=69;SR=376|580;SA=24|45;SB=0.34783;AB=0.52427;ABR=54;ABA=48;RUN=1;SNP;TS;CpG
+20	119734	.	T	C	4.93	PASS	NS=310;DP=1053;AC=1;AN=620;AF=0.0016129;RA=1034;AA=10;SR=379|655;SA=2|8;SB=0.2;AB=0.5;ABR=3;ABA=3;RUN=3;SNP;TS
+20	119897	.	T	C	0.0526	PASS	NS=263;DP=770;AC=1;AN=526;AF=0.0019011;RA=760;AA=7;SR=349|411;SA=4|3;SB=0.57143;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS;CpG
+20	119918	.	A	G	44.3	PASS	NS=294;DP=924;AC=3;AN=588;AF=0.005102;RA=911;AA=11;SR=340|571;SA=2|9;SB=0.18182;AB=0.52632;ABR=10;ABA=9;RUN=1;SNP;TS
+20	119945	.	T	C	0.0906	PASS	NS=335;DP=1320;AC=1;AN=670;AF=0.0014925;RA=1312;AA=3;SR=458|854;SA=1|2;SB=0.33333;AB=0.7;ABR=7;ABA=3;RUN=2;SNP;TS;CpG
+20	119983	.	T	C	18.0	PASS	NS=351;DP=1675;AC=1;AN=702;AF=0.0014245;RA=1664;AA=4;SR=800|864;SA=2|2;SB=0.5;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	119986	.	T	A	99.0	PASS	NS=348;DP=1647;AC=34;AN=696;AF=0.048851;RA=1580;AA=64;SR=781|799;SA=29|35;SB=0.45312;AB=0.55046;ABR=60;ABA=49;RUN=3;SNP;TV
+20	119992	.	A	T	0.112	PASS	NS=348;DP=1643;AC=1;AN=696;AF=0.0014368;RA=1632;AA=3;SR=839|793;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	120093	rs6038351	T	C	99.0	PASS	NS=336;DP=1402;AC=35;AN=672;AF=0.052083;RA=1335;AA=61;SR=744|591;SA=39|22;SB=0.63934;AB=0.53153;ABR=59;ABA=52;RUN=1;SNP;TS
+20	120127	.	T	C	99.0	PASS	NS=345;DP=1541;AC=39;AN=690;AF=0.056522;RA=1447;AA=87;SR=872|575;SA=51|36;SB=0.58621;AB=0.47436;ABR=74;ABA=82;RUN=1;SNP;TS
+20	120210	.	G	C	99.0	PASS	NS=366;DP=2009;AC=16;AN=732;AF=0.021858;RA=1951;AA=51;SR=1192|759;SA=31|20;SB=0.60784;AB=0.44595;ABR=33;ABA=40;RUN=1;SNP;TV
+20	120234	.	C	A	99.0	PASS	NS=363;DP=1980;AC=21;AN=726;AF=0.028926;RA=1914;AA=62;SR=1162|752;SA=31|31;SB=0.5;AB=0.53982;ABR=61;ABA=52;RUN=6;SNP;TV
+20	120289	.	T	C	1.51	PASS	NS=359;DP=2131;AC=1;AN=718;AF=0.0013928;RA=2120;AA=4;SR=1226|894;SA=2|2;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	120327	.	A	G	99.0	PASS	NS=365;DP=2183;AC=3;AN=730;AF=0.0041096;RA=2172;AA=9;SR=1158|1014;SA=4|5;SB=0.44444;AB=0.52941;ABR=9;ABA=8;RUN=1;SNP;TS;CpG
+20	120353	.	T	C	99.0	PASS	NS=361;DP=2069;AC=15;AN=722;AF=0.020776;RA=2029;AA=35;SR=1056|973;SA=16|19;SB=0.45714;AB=0.34043;ABR=16;ABA=31;RUN=1;SNP;TS;CpG
+20	120463	.	T	C	0.168	PASS	NS=357;DP=2200;AC=1;AN=714;AF=0.0014006;RA=2187;AA=4;SR=1102|1085;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TS
+20	120464	.	T	C	0.96	PASS	NS=357;DP=2188;AC=1;AN=714;AF=0.0014006;RA=2158;AA=17;SR=1089|1069;SA=3|14;SB=0.17647;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	120471	rs6117088	A	G	99.0	PASS	NS=355;DP=2155;AC=292;AN=710;AF=0.41127;RA=1332;AA=818;SR=667|665;SA=419|399;SB=0.51222;AB=0.50122;ABR=411;ABA=408;RUN=2;SNP;TS;CpG
+20	120487	.	A	G	0.161	PASS	NS=361;DP=2223;AC=1;AN=722;AF=0.001385;RA=2217;AA=2;SR=1044|1173;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS;CpG
+20	120491	.	G	A	2.04	PASS	NS=361;DP=2213;AC=1;AN=722;AF=0.001385;RA=2201;AA=3;SR=1022|1179;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=4;SNP;TS
+20	120534	.	T	A	2.45	PASS	NS=366;DP=2334;AC=1;AN=732;AF=0.0013661;RA=2317;AA=6;SR=1093|1224;SA=2|4;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	120535	.	G	A	3.2	PASS	NS=366;DP=2332;AC=1;AN=732;AF=0.0013661;RA=2321;AA=5;SR=1104|1217;SA=2|3;SB=0.4;AB=0.57143;ABR=4;ABA=3;RUN=1;SNP;TS
+20	120553	.	G	A	99.0	PASS	NS=363;DP=2295;AC=38;AN=726;AF=0.052342;RA=2196;AA=93;SR=1087|1109;SA=46|47;SB=0.49462;AB=0.5509;ABR=92;ABA=75;RUN=1;SNP;TS
+20	120746	.	A	G	0.107	PASS	NS=356;DP=2078;AC=1;AN=712;AF=0.0014045;RA=2073;AA=3;SR=1040|1033;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	120761	.	A	G	4.72	PASS	NS=360;DP=2025;AC=2;AN=720;AF=0.0027778;RA=2013;AA=7;SR=1011|1002;SA=2|5;SB=0.28571;AB=0.72727;ABR=8;ABA=3;RUN=1;SNP;TS
+20	120863	.	T	C	7.31	PASS	NS=356;DP=2117;AC=1;AN=712;AF=0.0014045;RA=2108;AA=2;SR=1114|994;SA=1|1;SB=0.5;AB=0;ABR=0;ABA=2;RUN=1;SNP;TS
+20	120911	.	T	C	4.66	PASS	NS=364;DP=2171;AC=1;AN=728;AF=0.0013736;RA=2152;AA=3;SR=1110|1042;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	121040	.	C	T	0.0497	PASS	NS=351;DP=2064;AC=1;AN=702;AF=0.0014245;RA=2047;AA=3;SR=1039|1008;SA=3|0;SB=1;AB=0.8;ABR=4;ABA=1;RUN=1;SNP;TS
+20	121125	.	A	G	2.32	PASS	NS=362;DP=2128;AC=1;AN=724;AF=0.0013812;RA=2124;AA=3;SR=1089|1035;SA=3|0;SB=1;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	121188	.	G	A	99.0	PASS	NS=363;DP=1947;AC=35;AN=726;AF=0.048209;RA=1842;AA=103;SR=897|945;SA=51|52;SB=0.49515;AB=0.4069;ABR=59;ABA=86;RUN=2;SNP;TS
+20	121235	.	C	T	0.234	PASS	NS=360;DP=1946;AC=1;AN=720;AF=0.0013889;RA=1935;AA=3;SR=820|1115;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	121288	.	G	A	43.3	PASS	NS=364;DP=2030;AC=1;AN=728;AF=0.0013736;RA=2021;AA=5;SR=756|1265;SA=1|4;SB=0.2;AB=0.625;ABR=5;ABA=3;RUN=1;SNP;TS;CpG
+20	121310	rs6053983	A	C	99.0	PASS	NS=358;DP=1910;AC=195;AN=716;AF=0.27235;RA=1431;AA=477;SR=602|829;SA=212|265;SB=0.44444;AB=0.52581;ABR=326;ABA=294;RUN=1;SNP;TV
+20	121478	rs6117152	C	A	99.0	PASS	NS=332;DP=1073;AC=248;AN=664;AF=0.37349;RA=685;AA=338;SR=373|312;SA=200|138;SB=0.59172;AB=0.49371;ABR=157;ABA=143;RUN=1;SNP;TV
+20	121493	.	C	T	99.0	PASS	NS=304;DP=848;AC=120;AN=608;AF=0.19737;RA=641;AA=202;SR=285|356;SA=94|108;SB=0.46535;AB=0.59302;ABR=204;ABA=137;RUN=18;SNP;TS
+20	121543	.	C	T	73.2	PASS	NS=355;DP=1309;AC=2;AN=710;AF=0.0028169;RA=1270;AA=6;SR=571|699;SA=3|3;SB=0.5;AB=0.33333;ABR=3;ABA=5;RUN=1;SNP;TS
+20	121609	rs61132478	G	C	99.0	PASS	NS=362;DP=1963;AC=22;AN=724;AF=0.030387;RA=1886;AA=71;SR=987|899;SA=41|30;SB=0.57746;AB=0.496;ABR=62;ABA=63;RUN=1;SNP;TV
+20	121682	.	C	A	2.49	PASS	NS=361;DP=1952;AC=1;AN=722;AF=0.001385;RA=1941;AA=6;SR=1070|871;SA=3|3;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	121727	.	T	C	0.137	PASS	NS=365;DP=2073;AC=1;AN=730;AF=0.0013699;RA=2064;AA=4;SR=1229|835;SA=3|1;SB=0.75;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TS;CpG
+20	121761	.	G	A	0.814	PASS	NS=363;DP=1992;AC=1;AN=726;AF=0.0013774;RA=1983;AA=4;SR=1067|916;SA=1|3;SB=0.25;AB=0.81818;ABR=9;ABA=2;RUN=2;SNP;TS
+20	121787	.	A	G	5.77	PASS	NS=368;DP=1959;AC=1;AN=736;AF=0.0013587;RA=1946;AA=6;SR=952|994;SA=3|3;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS;CpG
+20	121824	rs6038402	C	T	99.0	PASS	NS=366;DP=1902;AC=299;AN=732;AF=0.40847;RA=1098;AA=764;SR=470|628;SA=353|411;SB=0.46204;AB=0.48175;ABR=330;ABA=346;RUN=1;SNP;TS
+20	121975	.	C	T	0.0658	PASS	NS=368;DP=2209;AC=1;AN=736;AF=0.0013587;RA=2200;AA=2;SR=1147|1053;SA=2|0;SB=1;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS;CpG
+20	121976	rs6038405	G	A	99.0	PASS	NS=368;DP=2174;AC=320;AN=736;AF=0.43478;RA=1282;AA=888;SR=680|602;SA=467|421;SB=0.5259;AB=0.50249;ABR=404;ABA=399;RUN=1;SNP;TS;CpG
+20	121986	.	A	G	29.8	PASS	NS=366;DP=2153;AC=4;AN=732;AF=0.0054645;RA=2143;AA=7;SR=1159|984;SA=3|4;SB=0.42857;AB=0.69565;ABR=16;ABA=7;RUN=1;SNP;TS
+20	122072	.	T	C	0.195	PASS	NS=369;DP=2181;AC=4;AN=738;AF=0.0054201;RA=2151;AA=13;SR=1122|1029;SA=13|0;SB=1;AB=0.76;ABR=19;ABA=6;RUN=1;SNP;TS
+20	122202	.	C	T	2.54	PASS	NS=365;DP=2275;AC=1;AN=730;AF=0.0013699;RA=2262;AA=3;SR=1021|1241;SA=2|1;SB=0.66667;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	122214	.	A	T	0.559	PASS	NS=368;DP=2327;AC=1;AN=736;AF=0.0013587;RA=2321;AA=5;SR=1038|1283;SA=3|2;SB=0.6;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	122337	.	A	G	13.1	PASS	NS=370;DP=2216;AC=1;AN=740;AF=0.0013514;RA=2208;AA=4;SR=1130|1078;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	122411	.	C	T	1.75	PASS	NS=366;DP=2162;AC=1;AN=732;AF=0.0013661;RA=2155;AA=3;SR=1002|1153;SA=2|1;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	122505	.	T	G	99.0	PASS	NS=358;DP=2049;AC=24;AN=716;AF=0.03352;RA=1985;AA=61;SR=948|1037;SA=23|38;SB=0.37705;AB=0.48936;ABR=46;ABA=48;RUN=1;SNP;TV
+20	122508	rs6117214	G	A	99.0	PASS	NS=358;DP=2024;AC=118;AN=716;AF=0.1648;RA=1718;AA=301;SR=831|887;SA=133|168;SB=0.44186;AB=0.51299;ABR=237;ABA=224;RUN=4;SNP;TS
+20	122511	.	T	C	99.0	PASS	NS=363;DP=2032;AC=20;AN=726;AF=0.027548;RA=1967;AA=59;SR=932|1035;SA=27|32;SB=0.45763;AB=0.39706;ABR=27;ABA=41;RUN=2;SNP;TS
+20	122548	.	C	T	99.0	PASS	NS=356;DP=1990;AC=37;AN=712;AF=0.051966;RA=1899;AA=86;SR=950|949;SA=49|37;SB=0.56977;AB=0.51471;ABR=70;ABA=66;RUN=6;SNP;TS
+20	122637	.	G	T	0.0819	PASS	NS=365;DP=2023;AC=1;AN=730;AF=0.0013699;RA=2003;AA=14;SR=955|1048;SA=6|8;SB=0.42857;AB=0.75;ABR=3;ABA=1;RUN=2;SNP;TV
+20	122706	.	G	A	13.0	PASS	NS=362;DP=2089;AC=3;AN=724;AF=0.0041436;RA=2063;AA=10;SR=944|1119;SA=6|4;SB=0.6;AB=0.4375;ABR=7;ABA=9;RUN=5;SNP;TS
+20	122770	.	T	C	0.0898	PASS	NS=359;DP=2007;AC=1;AN=718;AF=0.0013928;RA=2001;AA=3;SR=951|1050;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	122897	.	C	G	63.7	PASS	NS=367;DP=2167;AC=1;AN=734;AF=0.0013624;RA=2145;AA=11;SR=1277|868;SA=6|5;SB=0.54545;AB=0.45455;ABR=5;ABA=6;RUN=2;SNP;TV
+20	122913	.	G	C	33.5	PASS	NS=368;DP=2131;AC=1;AN=736;AF=0.0013587;RA=2115;AA=7;SR=1201|914;SA=5|2;SB=0.71429;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TV
+20	122977	.	T	A	0.153	PASS	NS=368;DP=2071;AC=3;AN=736;AF=0.0040761;RA=2056;AA=6;SR=1062|994;SA=3|3;SB=0.5;AB=0.71429;ABR=10;ABA=4;RUN=4;SNP;TV
+20	122995	.	C	G	0.222	PASS	NS=368;DP=2170;AC=1;AN=736;AF=0.0013587;RA=2158;AA=3;SR=1124|1034;SA=3|0;SB=1;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	123021	.	C	T	0.0437	PASS	NS=368;DP=2290;AC=2;AN=736;AF=0.0027174;RA=2281;AA=4;SR=1221|1060;SA=3|1;SB=0.75;AB=0.76923;ABR=10;ABA=3;RUN=3;SNP;TS
+20	123037	.	T	C	99.0	PASS	NS=367;DP=2305;AC=4;AN=734;AF=0.0054496;RA=2285;AA=13;SR=1267|1018;SA=10|3;SB=0.76923;AB=0.63333;ABR=19;ABA=11;RUN=2;SNP;TS
+20	123073	.	C	T	0.404	PASS	NS=371;DP=2357;AC=2;AN=742;AF=0.0026954;RA=2341;AA=7;SR=1293|1048;SA=5|2;SB=0.71429;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TS
+20	123251	.	T	C	71.0	PASS	NS=363;DP=2413;AC=1;AN=726;AF=0.0013774;RA=2393;AA=10;SR=1226|1167;SA=7|3;SB=0.7;AB=0.5;ABR=4;ABA=4;RUN=1;SNP;TS
+20	123318	.	T	C	99.0	PASS	NS=367;DP=2371;AC=24;AN=734;AF=0.032698;RA=2289;AA=73;SR=1174|1115;SA=41|32;SB=0.56164;AB=0.5;ABR=56;ABA=56;RUN=1;SNP;TS
+20	123404	.	T	A	6.08	PASS	NS=365;DP=2328;AC=1;AN=730;AF=0.0013699;RA=2304;AA=6;SR=1114|1190;SA=4|2;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	123499	.	C	T	99.0	PASS	NS=367;DP=2330;AC=5;AN=734;AF=0.006812;RA=2298;AA=18;SR=1062|1236;SA=6|12;SB=0.33333;AB=0.38462;ABR=10;ABA=16;RUN=2;SNP;TS
+20	123500	.	A	G	0.191	PASS	NS=367;DP=2342;AC=1;AN=734;AF=0.0013624;RA=2317;AA=13;SR=1062|1255;SA=3|10;SB=0.23077;AB=0.77778;ABR=7;ABA=2;RUN=3;SNP;TS;CpG
+20	123513	.	A	G	1.47	PASS	NS=368;DP=2373;AC=1;AN=736;AF=0.0013587;RA=2358;AA=5;SR=1071|1287;SA=2|3;SB=0.4;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TS
+20	123556	.	C	G	7.19	PASS	NS=371;DP=2383;AC=1;AN=742;AF=0.0013477;RA=2370;AA=6;SR=1058|1312;SA=2|4;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	123564	.	T	C	0.229	PASS	NS=372;DP=2373;AC=1;AN=744;AF=0.0013441;RA=2348;AA=10;SR=1045|1303;SA=3|7;SB=0.3;AB=0.72727;ABR=8;ABA=2;RUN=5;SNP;TS
+20	123809	.	A	T	0.953	PASS	NS=356;DP=1910;AC=1;AN=712;AF=0.0014045;RA=1896;AA=7;SR=843|1053;SA=5|2;SB=0.71429;AB=0.625;ABR=5;ABA=3;RUN=2;SNP;TV
+20	123979	.	C	A	0.314	PASS	NS=363;DP=2152;AC=1;AN=726;AF=0.0013774;RA=2141;AA=3;SR=1118|1023;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	124059	.	C	T	37.8	PASS	NS=358;DP=1984;AC=3;AN=716;AF=0.0041899;RA=1971;AA=7;SR=971|1000;SA=5|2;SB=0.71429;AB=0.44444;ABR=4;ABA=5;RUN=1;SNP;TS;CpG
+20	124060	.	G	A	34.6	PASS	NS=359;DP=1991;AC=1;AN=718;AF=0.0013928;RA=1983;AA=3;SR=995|988;SA=2|1;SB=0.66667;AB=0.5;ABR=3;ABA=3;RUN=2;SNP;TS;CpG
+20	124137	.	C	A	0.0701	PASS	NS=357;DP=1933;AC=1;AN=714;AF=0.0014006;RA=1922;AA=4;SR=990|932;SA=0|4;SB=0;AB=0.5;ABR=1;ABA=1;RUN=2;SNP;TV
+20	124148	.	A	G	0.344	PASS	NS=358;DP=1957;AC=2;AN=716;AF=0.0027933;RA=1947;AA=6;SR=989|958;SA=1|5;SB=0.16667;AB=0.8;ABR=12;ABA=3;RUN=1;SNP;TS
+20	124229	.	T	C	0.672	PASS	NS=356;DP=1979;AC=1;AN=712;AF=0.0014045;RA=1972;AA=4;SR=1025|947;SA=1|3;SB=0.25;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	124230	.	A	G	0.0816	PASS	NS=356;DP=1970;AC=1;AN=712;AF=0.0014045;RA=1959;AA=4;SR=1026|933;SA=1|3;SB=0.25;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	124249	.	A	G	99.0	PASS	NS=359;DP=1969;AC=41;AN=718;AF=0.057103;RA=1864;AA=101;SR=974|890;SA=55|46;SB=0.54455;AB=0.51977;ABR=92;ABA=85;RUN=1;SNP;TS;CpG
+20	124302	rs6038528	A	C	99.0	PASS	NS=358;DP=2007;AC=319;AN=716;AF=0.44553;RA=1185;AA=819;SR=577|608;SA=392|427;SB=0.47863;AB=0.51934;ABR=376;ABA=348;RUN=2;SNP;TV
+20	124335	.	C	T	99.0	PASS	NS=361;DP=2035;AC=4;AN=722;AF=0.0055402;RA=2013;AA=15;SR=929|1084;SA=10|5;SB=0.66667;AB=0.3913;ABR=9;ABA=14;RUN=1;SNP;TS
+20	124412	rs6054328	C	T	99.0	PASS	NS=357;DP=2005;AC=307;AN=714;AF=0.42997;RA=1207;AA=795;SR=602|605;SA=400|395;SB=0.50314;AB=0.51286;ABR=379;ABA=360;RUN=1;SNP;TS
+20	124511	.	T	A	0.647	PASS	NS=365;DP=2141;AC=1;AN=730;AF=0.0013699;RA=2133;AA=4;SR=1077|1056;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TV
+20	124607	.	A	G	2.28	PASS	NS=357;DP=1872;AC=1;AN=714;AF=0.0014006;RA=1865;AA=2;SR=930|935;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	124737	.	A	C	99.0	PASS	NS=367;DP=2024;AC=4;AN=734;AF=0.0054496;RA=2003;AA=16;SR=1046|957;SA=11|5;SB=0.6875;AB=0.26316;ABR=5;ABA=14;RUN=1;SNP;TV
+20	124827	.	T	C	1.7	PASS	NS=367;DP=2059;AC=1;AN=734;AF=0.0013624;RA=2048;AA=4;SR=987|1061;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	124848	.	A	G	36.5	PASS	NS=364;DP=2077;AC=1;AN=728;AF=0.0013736;RA=2060;AA=6;SR=966|1094;SA=2|4;SB=0.33333;AB=0.57143;ABR=4;ABA=3;RUN=1;SNP;TS
+20	124878	.	G	A	0.22	PASS	NS=361;DP=2060;AC=1;AN=722;AF=0.001385;RA=2049;AA=4;SR=974|1075;SA=3|1;SB=0.75;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	124920	.	A	G	76.0	PASS	NS=361;DP=1956;AC=1;AN=722;AF=0.001385;RA=1949;AA=6;SR=984|965;SA=2|4;SB=0.33333;AB=0.14286;ABR=1;ABA=6;RUN=1;SNP;TS;CpG
+20	124942	.	A	T	1.44	PASS	NS=362;DP=2015;AC=1;AN=724;AF=0.0013812;RA=2007;AA=4;SR=1107|900;SA=1|3;SB=0.25;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	124998	rs6117341	T	C	99.0	PASS	NS=366;DP=2204;AC=29;AN=732;AF=0.039617;RA=2131;AA=66;SR=1132|999;SA=36|30;SB=0.54545;AB=0.54902;ABR=56;ABA=46;RUN=1;SNP;TS
+20	125096	.	C	G	4.18	PASS	NS=363;DP=2095;AC=1;AN=726;AF=0.0013774;RA=2082;AA=2;SR=1071|1011;SA=2|0;SB=1;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	125109	.	A	T	0.0858	PASS	NS=365;DP=2091;AC=2;AN=730;AF=0.0027397;RA=2080;AA=7;SR=1103|977;SA=7|0;SB=1;AB=0.66667;ABR=6;ABA=3;RUN=8;SNP;TV
+20	125121	rs1342137	C	T	99.0	PASS	NS=364;DP=2075;AC=208;AN=728;AF=0.28571;RA=1472;AA=599;SR=826|646;SA=335|264;SB=0.55927;AB=0.49868;ABR=377;ABA=378;RUN=1;SNP;TS
+20	125179	.	C	A	99.0	PASS	NS=368;DP=2155;AC=7;AN=736;AF=0.0095109;RA=2127;AA=26;SR=1123|1004;SA=16|10;SB=0.61538;AB=0.36842;ABR=14;ABA=24;RUN=2;SNP;TV
+20	125266	.	T	A	3.47	PASS	NS=364;DP=2138;AC=1;AN=728;AF=0.0013736;RA=2123;AA=5;SR=907|1216;SA=1|4;SB=0.2;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	125381	.	A	G	4.69	PASS	NS=362;DP=2102;AC=1;AN=724;AF=0.0013812;RA=2094;AA=3;SR=919|1175;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	125450	.	G	A	0.364	PASS	NS=359;DP=1881;AC=1;AN=718;AF=0.0013928;RA=1868;AA=5;SR=862|1006;SA=1|4;SB=0.2;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	125470	.	A	G	0.602	PASS	NS=360;DP=1870;AC=1;AN=720;AF=0.0013889;RA=1855;AA=5;SR=909|946;SA=3|2;SB=0.6;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
diff -r 000000000000 -r b001b50f2009 test-data/test_annotated_hapmap.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_annotated_hapmap.vcf	Mon Jan 27 09:28:06 2014 -0500
@@ -0,0 +1,1003 @@
+##fileformat=VCFv4.0
+##fileDate=20110215
+##source=freeBayes version 0.4.1
+##reference=/d2/data/references/build_37/human_reference_v37.fa
+##phasing=none
+##commandline="/share/software/freebayes/bin/freebayes --stdin --no-filters --min-alternate-count 2 --posterior-integration-depth 100 --pvar 0.01 --vcf /d1/data/1000G/20101123/filteringTests/AFR/mosaik/noFilters/Pipeline/none//freebayes/freebayes.20:0-1000000.baq.20110210.vcf --fasta-reference /d2/data/references/build_37/human_reference_v37.fa --region 20:0..1000000"
+##vcfPytools=merge freebayes.20:0-1000000.baq.20110210.vcf, freebayes.20:1000000-2000000.baq.20110210.vcf, freebayes.20:2000000-3000000.baq.20110210.vcf, freebayes.20:3000000-4000000.baq.20110210.vcf, freebayes.20:4000000-5000000.baq.20110210.vcf, freebayes.20:5000000-6000000.baq.20110210.vcf, freebayes.20:6000000-7000000.baq.20110210.vcf, freebayes.20:7000000-8000000.baq.20110210.vcf, freebayes.20:8000000-9000000.baq.20110210.vcf, freebayes.20:9000000-10000000.baq.20110210.vcf, freebayes.20:10000000-11000000.baq.20110210.vcf, freebayes.20:11000000-12000000.baq.20110210.vcf, freebayes.20:12000000-13000000.baq.20110210.vcf, freebayes.20:13000000-14000000.baq.20110210.vcf, freebayes.20:14000000-15000000.baq.20110210.vcf, freebayes.20:15000000-16000000.baq.20110210.vcf, freebayes.20:16000000-17000000.baq.20110210.vcf, freebayes.20:17000000-18000000.baq.20110210.vcf, freebayes.20:18000000-19000000.baq.20110210.vcf, freebayes.20:19000000-20000000.baq.20110210.vcf, freebayes.20:20000000-21000000.baq.20110210.vcf, freebayes.20:21000000-22000000.baq.20110210.vcf, freebayes.20:22000000-23000000.baq.20110210.vcf, freebayes.20:23000000-24000000.baq.20110210.vcf, freebayes.20:24000000-25000000.baq.20110210.vcf, freebayes.20:25000000-26000000.baq.20110210.vcf, freebayes.20:26000000-27000000.baq.20110210.vcf, freebayes.20:27000000-28000000.baq.20110210.vcf, freebayes.20:28000000-29000000.baq.20110210.vcf, freebayes.20:29000000-30000000.baq.20110210.vcf, freebayes.20:30000000-31000000.baq.20110210.vcf, freebayes.20:31000000-32000000.baq.20110210.vcf, freebayes.20:32000000-33000000.baq.20110210.vcf, freebayes.20:33000000-34000000.baq.20110210.vcf, freebayes.20:34000000-35000000.baq.20110210.vcf, freebayes.20:35000000-36000000.baq.20110210.vcf, freebayes.20:36000000-37000000.baq.20110210.vcf, freebayes.20:37000000-38000000.baq.20110210.vcf, freebayes.20:38000000-39000000.baq.20110210.vcf, freebayes.20:39000000-40000000.baq.20110210.vcf, freebayes.20:40000000-41000000.baq.20110210.vcf, freebayes.20:41000000-42000000.baq.20110210.vcf, freebayes.20:42000000-43000000.baq.20110210.vcf, freebayes.20:43000000-44000000.baq.20110210.vcf, freebayes.20:44000000-45000000.baq.20110210.vcf, freebayes.20:45000000-46000000.baq.20110210.vcf, freebayes.20:46000000-47000000.baq.20110210.vcf, freebayes.20:47000000-48000000.baq.20110210.vcf, freebayes.20:48000000-49000000.baq.20110210.vcf, freebayes.20:49000000-50000000.baq.20110210.vcf, freebayes.20:50000000-51000000.baq.20110210.vcf, freebayes.20:51000000-52000000.baq.20110210.vcf, freebayes.20:52000000-53000000.baq.20110210.vcf, freebayes.20:53000000-54000000.baq.20110210.vcf, freebayes.20:54000000-55000000.baq.20110210.vcf, freebayes.20:55000000-56000000.baq.20110210.vcf, freebayes.20:56000000-57000000.baq.20110210.vcf, freebayes.20:57000000-58000000.baq.20110210.vcf, freebayes.20:58000000-59000000.baq.20110210.vcf, freebayes.20:59000000-60000000.baq.20110210.vcf, freebayes.20:60000000-61000000.baq.20110210.vcf, freebayes.20:61000000-62000000.baq.20110210.vcf, freebayes.20:62000000-63000000.baq.20110210.vcf, freebayes.20:63000000-63025520.baq.20110210.vcf
+##vcfPytools=
+##vcfPytools=annotated vcf file with hapmap file /Users/rc/work/galaxy_lims/galaxy-central/database/files/000/dataset_59.dat
+##INFO=<ID=REPEAT,Number=1,Type=String,Description="Description of the local repeat structures flanking the current position">
+##INFO=<ID=DEL,Number=1,Type=Integer,Description="Length of deletion allele, if present">
+##INFO=<ID=INS,Number=1,Type=Integer,Description="Length of insertion allele, if present">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
+##INFO=<ID=HM3A,Number=0,Type=Flag,Description="Hapmap3.2 membership (with different alleles), determined from file /Users/rc/work/galaxy_lims/galaxy-central/database/files/000/dataset_59.dat">
+##INFO=<ID=TV,Number=0,Type=Flag,Description="transversion SNP">
+##INFO=<ID=TS,Number=0,Type=Flag,Description="transition SNP">
+##INFO=<ID=RA,Number=1,Type=Integer,Description="Reference allele observations">
+##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
+##INFO=<ID=AA,Number=1,Type=Integer,Description="Alternate allele observations">
+##INFO=<ID=ABA,Number=1,Type=Integer,Description="Alternate allele balance count: the number of sequence reads from apparent heterozygotes supporting the alternate allele">
+##INFO=<ID=AC,Number=1,Type=Integer,Description="Total number of alternate alleles in called genotypes">
+##INFO=<ID=AB,Number=1,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
+##INFO=<ID=AF,Number=1,Type=Float,Description="Estimated allele frequency in the range (0,1]">
+##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
+##INFO=<ID=ABR,Number=1,Type=Integer,Description="Reference allele balance count: the number of sequence reads from apparent heterozygotes supporting the reference allele">
+##INFO=<ID=HM3,Number=0,Type=Flag,Description="Hapmap3.2 membership determined from file /Users/rc/work/galaxy_lims/galaxy-central/database/files/000/dataset_59.dat">
+##INFO=<ID=RUN,Number=1,Type=Integer,Description="Homopolymer run length: the number of consecutive nucleotides in the reference genome matching the alternate allele prior to the current position">
+##INFO=<ID=SR,Number=1,Type=Integer,Description="Number of reference observations by strand, delimited by |: [forward]|[reverse]">
+##INFO=<ID=CpG,Number=0,Type=Flag,Description="CpG site (either CpG, TpG or CpA)">
+##INFO=<ID=MNP,Number=0,Type=Integer,Description="Length of MNP allele, if present">
+##INFO=<ID=SNP,Number=0,Type=Flag,Description="SNP allele">
+##INFO=<ID=SB,Number=1,Type=Float,Description="Strand bias for the alternate allele: a number between 0 and 1 representing the ratio of forward strand sequence reads showing the alternate allele to all reads, considering only reads from individuals called as heterozygous">
+##INFO=<ID=SA,Number=1,Type=Integer,Description="Number of alternate observations by strand, delimited by |: [forward]|[reverse]">
+##FORMAT=<ID=AA,Number=1,Type=Integer,Description="Alternate allele observations">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=SR,Number=1,Type=Integer,Description="Number of reference observations by strand, delimited by |: [forward]|[reverse]">
+##FORMAT=<ID=RA,Number=1,Type=Integer,Description="Reference allele observations">
+##FORMAT=<ID=SA,Number=1,Type=Integer,Description="Number of alternate observations by strand, delimited by |: [forward]|[reverse]">
+##FORMAT=<ID=GL,Number=1,Type=Float,Description="Genotype Likelihood">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
+20	60479	.	C	T	75.2	PASS	NS=368;DP=2111;AC=4;AN=736;AF=0.0054348;RA=2096;AA=9;SR=1153|943;SA=5|4;SB=0.55556;AB=0.47059;ABR=8;ABA=9;RUN=2;SNP;TS
+20	60571	.	C	A	99.0	PASS	NS=366;DP=2338;AC=6;AN=732;AF=0.0081967;RA=2293;AA=30;SR=1123|1170;SA=19|11;SB=0.63333;AB=0.51515;ABR=17;ABA=16;RUN=1;SNP;TV
+20	60828	.	T	G	8.94	PASS	NS=361;DP=2341;AC=3;AN=722;AF=0.0041551;RA=2267;AA=30;SR=1101|1166;SA=15|15;SB=0.5;AB=0.16667;ABR=1;ABA=4;RUN=3;SNP;TV
+20	61098	.	C	T	99.0	PASS	NS=366;DP=1780;AC=140;AN=732;AF=0.19126;RA=1457;AA=317;SR=600|857;SA=132|185;SB=0.4164;AB=0.56587;ABR=262;ABA=198;RUN=2;SNP;TS
+20	61270	.	A	C	1.01	PASS	NS=220;DP=449;AC=18;AN=440;AF=0.040909;RA=423;AA=23;SR=165|258;SA=6|17;SB=0.26087;AB=0.61111;ABR=11;ABA=7;RUN=1;SNP;TV
+20	61388	.	T	C	46.6	PASS	NS=314;DP=1036;AC=2;AN=628;AF=0.0031847;RA=1025;AA=6;SR=709|316;SA=2|4;SB=0.33333;AB=0.5;ABR=5;ABA=5;RUN=1;SNP;TS
+20	61409	.	A	G	36.0	PASS	NS=340;DP=1212;AC=1;AN=680;AF=0.0014706;RA=1207;AA=4;SR=876|331;SA=2|2;SB=0.5;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS
+20	61517	.	C	T	13.8	PASS	NS=363;DP=2032;AC=1;AN=726;AF=0.0013774;RA=2019;AA=7;SR=1200|819;SA=7|0;SB=1;AB=0.72727;ABR=8;ABA=3;RUN=4;SNP;TS
+20	61535	.	A	G	0.0666	PASS	NS=362;DP=2048;AC=1;AN=724;AF=0.0013812;RA=2037;AA=4;SR=1150|887;SA=3|1;SB=0.75;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	61586	.	C	A	0.0941	PASS	NS=362;DP=1953;AC=1;AN=724;AF=0.0013812;RA=1941;AA=6;SR=1062|879;SA=3|3;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	61651	.	C	A	99.0	PASS	NS=369;DP=2217;AC=6;AN=738;AF=0.0081301;RA=2190;AA=22;SR=1230|960;SA=12|10;SB=0.54545;AB=0.41176;ABR=14;ABA=20;RUN=4;SNP;TV
+20	61724	.	A	C	99.0	PASS	NS=369;DP=2442;AC=6;AN=738;AF=0.0081301;RA=2409;AA=29;SR=1205|1204;SA=16|13;SB=0.55172;AB=0.48889;ABR=22;ABA=23;RUN=2;SNP;TV
+20	61795	.	G	T	99.0	PASS	NS=368;DP=2464;AC=324;AN=736;AF=0.44022;RA=1426;AA=1032;SR=740|686;SA=519|513;SB=0.50291;AB=0.49956;ABR=568;ABA=565;RUN=1;SNP;TV;HM3
+20	61807	.	G	T	16.2	PASS	NS=369;DP=2523;AC=2;AN=738;AF=0.00271;RA=2506;AA=7;SR=1311|1195;SA=4|3;SB=0.57143;AB=0.625;ABR=5;ABA=3;RUN=1;SNP;TV
+20	61848	.	A	G	0.0723	PASS	NS=370;DP=2478;AC=1;AN=740;AF=0.0013514;RA=2458;AA=9;SR=1313|1145;SA=2|7;SB=0.22222;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TS;CpG
+20	61909	.	C	G	0.224	PASS	NS=366;DP=2253;AC=1;AN=732;AF=0.0013661;RA=2240;AA=4;SR=1131|1109;SA=1|3;SB=0.25;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	61986	.	G	A	0.054	PASS	NS=364;DP=2106;AC=1;AN=728;AF=0.0013736;RA=2072;AA=26;SR=906|1166;SA=0|26;SB=0;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	62100	.	T	C	82.3	PASS	NS=363;DP=2082;AC=3;AN=726;AF=0.0041322;RA=2069;AA=8;SR=1052|1017;SA=2|6;SB=0.25;AB=0.5;ABR=7;ABA=7;RUN=1;SNP;TS
+20	62255	.	T	C	99.0	PASS	NS=361;DP=2204;AC=1;AN=722;AF=0.001385;RA=2195;AA=6;SR=1247|948;SA=6|0;SB=1;AB=0.57143;ABR=8;ABA=6;RUN=1;SNP;TS
+20	62348	.	A	G	99.0	PASS	NS=350;DP=1861;AC=2;AN=700;AF=0.0028571;RA=1845;AA=10;SR=949|896;SA=3|7;SB=0.3;AB=0.23077;ABR=3;ABA=10;RUN=1;SNP;TS
+20	62420	.	A	G	46.8	PASS	NS=364;DP=1821;AC=1;AN=728;AF=0.0013736;RA=1812;AA=3;SR=933|879;SA=0|3;SB=0;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS
+20	62471	.	G	A	43.6	PASS	NS=350;DP=1782;AC=2;AN=700;AF=0.0028571;RA=1772;AA=7;SR=891|881;SA=3|4;SB=0.42857;AB=0.69231;ABR=9;ABA=4;RUN=1;SNP;TS;CpG
+20	62530	.	A	G	1.17	PASS	NS=364;DP=2137;AC=1;AN=728;AF=0.0013736;RA=2129;AA=4;SR=1034|1095;SA=1|3;SB=0.25;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	62545	.	C	G	99.0	PASS	NS=348;DP=2043;AC=5;AN=696;AF=0.0071839;RA=2018;AA=17;SR=907|1111;SA=9|8;SB=0.52941;AB=0.44828;ABR=13;ABA=16;RUN=1;SNP;TV
+20	62553	.	T	C	0.193	PASS	NS=345;DP=2009;AC=2;AN=690;AF=0.0028986;RA=1986;AA=5;SR=869|1117;SA=3|2;SB=0.6;AB=0.76923;ABR=10;ABA=3;RUN=2;SNP;TS
+20	62673	.	G	T	0.556	PASS	NS=359;DP=2225;AC=1;AN=718;AF=0.0013928;RA=2218;AA=5;SR=1217|1001;SA=2|3;SB=0.4;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	62727	.	C	T	8.51	PASS	NS=347;DP=1801;AC=1;AN=694;AF=0.0014409;RA=1794;AA=2;SR=906|888;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	62731	.	C	A	99.0	PASS	NS=345;DP=1727;AC=22;AN=690;AF=0.031884;RA=1666;AA=55;SR=840|826;SA=26|29;SB=0.47273;AB=0.53061;ABR=52;ABA=46;RUN=2;SNP;TV
+20	62739	.	T	C	7.0	PASS	NS=342;DP=1646;AC=1;AN=684;AF=0.001462;RA=1623;AA=7;SR=812|811;SA=5|2;SB=0.71429;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	62770	.	G	C	3.33	PASS	NS=324;DP=1429;AC=1;AN=648;AF=0.0015432;RA=1422;AA=3;SR=655|767;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	62783	.	A	G	17.3	PASS	NS=328;DP=1471;AC=1;AN=656;AF=0.0015244;RA=1455;AA=8;SR=665|790;SA=4|4;SB=0.5;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TS
+20	62881	.	G	T	0.253	PASS	NS=345;DP=1772;AC=1;AN=690;AF=0.0014493;RA=1761;AA=7;SR=910|851;SA=3|4;SB=0.42857;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	62946	.	T	A	83.9	PASS	NS=349;DP=1880;AC=1;AN=698;AF=0.0014327;RA=1868;AA=5;SR=787|1081;SA=3|2;SB=0.6;AB=0.58333;ABR=7;ABA=5;RUN=2;SNP;TV
+20	62997	.	A	T	5.74	PASS	NS=364;DP=2195;AC=1;AN=728;AF=0.0013736;RA=2190;AA=2;SR=1042|1148;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	63054	.	A	G	48.5	PASS	NS=364;DP=2097;AC=3;AN=728;AF=0.0041209;RA=2082;AA=8;SR=1090|992;SA=5|3;SB=0.625;AB=0.52941;ABR=9;ABA=8;RUN=2;SNP;TS
+20	63055	.	A	G	0.234	PASS	NS=362;DP=2088;AC=1;AN=724;AF=0.0013812;RA=2078;AA=4;SR=1096|982;SA=2|2;SB=0.5;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	63063	.	T	C	0.0841	PASS	NS=363;DP=2065;AC=1;AN=726;AF=0.0013774;RA=2059;AA=2;SR=1083|976;SA=1|1;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	63141	.	T	C	2.61	PASS	NS=360;DP=1900;AC=1;AN=720;AF=0.0013889;RA=1891;AA=2;SR=1041|850;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	63197	.	T	A	0.305	PASS	NS=364;DP=2047;AC=1;AN=728;AF=0.0013736;RA=2037;AA=5;SR=1067|970;SA=1|4;SB=0.2;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TV
+20	63231	.	T	G	99.0	PASS	NS=360;DP=2025;AC=76;AN=720;AF=0.10556;RA=1828;AA=186;SR=914|914;SA=102|84;SB=0.54839;AB=0.52581;ABR=163;ABA=145;RUN=1;SNP;TV
+20	63244	.	A	C	99.0	PASS	NS=364;DP=1991;AC=84;AN=728;AF=0.11538;RA=1701;AA=284;SR=871|830;SA=132|152;SB=0.46479;AB=0.46951;ABR=154;ABA=174;RUN=2;SNP;TV;HM3
+20	63245	.	C	A	4.67	PASS	NS=364;DP=2000;AC=1;AN=728;AF=0.0013736;RA=1990;AA=6;SR=1010|980;SA=3|3;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TV
+20	63351	.	A	G	30.7	PASS	NS=369;DP=2363;AC=1;AN=738;AF=0.001355;RA=2354;AA=5;SR=1414|940;SA=4|1;SB=0.8;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TS
+20	63360	.	C	T	38.4	PASS	NS=367;DP=2348;AC=2;AN=734;AF=0.0027248;RA=2334;AA=4;SR=1363|971;SA=0|4;SB=0;AB=0.63636;ABR=7;ABA=4;RUN=1;SNP;TS
+20	63426	.	G	T	99.0	PASS	NS=369;DP=2178;AC=5;AN=738;AF=0.0067751;RA=2146;AA=17;SR=1263|883;SA=8|9;SB=0.47059;AB=0.69231;ABR=27;ABA=12;RUN=1;SNP;TV
+20	63452	.	C	G	99.0	PASS	NS=369;DP=2242;AC=22;AN=738;AF=0.02981;RA=2169;AA=68;SR=1220|949;SA=40|28;SB=0.58824;AB=0.47321;ABR=53;ABA=59;RUN=1;SNP;TV
+20	63466	.	A	G	0.305	PASS	NS=369;DP=2343;AC=1;AN=738;AF=0.001355;RA=2334;AA=3;SR=1290|1044;SA=1|2;SB=0.33333;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	63521	.	G	A	33.5	PASS	NS=370;DP=2387;AC=1;AN=740;AF=0.0013514;RA=2376;AA=3;SR=1217|1159;SA=2|1;SB=0.66667;AB=0.33333;ABR=2;ABA=3;RUN=1;SNP;TS
+20	63680	.	A	G	0.841	PASS	NS=371;DP=2758;AC=1;AN=742;AF=0.0013477;RA=2741;AA=5;SR=1422|1319;SA=3|2;SB=0.6;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS;CpG
+20	63733	.	C	T	99.0	PASS	NS=366;DP=2571;AC=58;AN=732;AF=0.079235;RA=2363;AA=200;SR=1311|1052;SA=101|99;SB=0.505;AB=0.50291;ABR=173;ABA=171;RUN=1;SNP;TS;CpG
+20	63746	.	C	T	0.0651	PASS	NS=369;DP=2564;AC=1;AN=738;AF=0.001355;RA=2552;AA=3;SR=1391|1161;SA=2|1;SB=0.66667;AB=0.84615;ABR=11;ABA=2;RUN=1;SNP;TS
+20	63799	.	C	T	99.0	PASS	NS=367;DP=2322;AC=331;AN=734;AF=0.45095;RA=1274;AA=1026;SR=610|664;SA=489|537;SB=0.47661;AB=0.53157;ABR=564;ABA=494;RUN=3;SNP;TS;HM3
+20	63808	.	G	C	99.0	PASS	NS=368;DP=2352;AC=61;AN=736;AF=0.08288;RA=2168;AA=171;SR=1043|1125;SA=80|91;SB=0.46784;AB=0.56869;ABR=178;ABA=134;RUN=1;SNP;TV
+20	63967	.	A	G	99.0	PASS	NS=370;DP=2363;AC=21;AN=740;AF=0.028378;RA=2276;AA=68;SR=911|1365;SA=26|42;SB=0.38235;AB=0.48837;ABR=63;ABA=66;RUN=1;SNP;TS
+20	63983	.	C	T	0.569	PASS	NS=371;DP=2349;AC=1;AN=742;AF=0.0013477;RA=2334;AA=3;SR=892|1442;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	64016	.	G	A	32.3	PASS	NS=370;DP=2259;AC=1;AN=740;AF=0.0013514;RA=2231;AA=15;SR=854|1377;SA=1|14;SB=0.066667;AB=0.5;ABR=3;ABA=3;RUN=2;SNP;TS
+20	64062	.	G	A	62.0	PASS	NS=370;DP=2274;AC=1;AN=740;AF=0.0013514;RA=2264;AA=6;SR=953|1311;SA=3|3;SB=0.5;AB=0.14286;ABR=1;ABA=6;RUN=3;SNP;TS
+20	64150	.	C	A	99.0	PASS	NS=368;DP=2268;AC=38;AN=736;AF=0.05163;RA=2160;AA=103;SR=881|1279;SA=41|62;SB=0.39806;AB=0.545;ABR=109;ABA=90;RUN=1;SNP;TV
+20	64175	.	A	G	97.6	PASS	NS=369;DP=2213;AC=1;AN=738;AF=0.001355;RA=2192;AA=10;SR=838|1354;SA=3|7;SB=0.3;AB=0.22222;ABR=2;ABA=7;RUN=3;SNP;TS
+20	64186	.	C	G	99.0	PASS	NS=369;DP=2166;AC=4;AN=738;AF=0.0054201;RA=2111;AA=20;SR=858|1253;SA=9|11;SB=0.45;AB=0.5;ABR=12;ABA=12;RUN=1;SNP;TV
+20	64539	.	A	T	0.0711	PASS	NS=352;DP=1674;AC=1;AN=704;AF=0.0014205;RA=1667;AA=4;SR=856|811;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=5;SNP;TV
+20	64560	.	A	G	0.0799	PASS	NS=358;DP=1831;AC=1;AN=716;AF=0.0013966;RA=1824;AA=4;SR=1057|767;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	64568	.	A	C	1.98	PASS	NS=355;DP=1856;AC=1;AN=710;AF=0.0014085;RA=1842;AA=7;SR=1124|718;SA=5|2;SB=0.71429;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	64587	.	A	G	1.36	PASS	NS=357;DP=1971;AC=1;AN=714;AF=0.0014006;RA=1963;AA=3;SR=1234|729;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	64597	.	T	C	0.152	PASS	NS=359;DP=1981;AC=1;AN=718;AF=0.0013928;RA=1974;AA=3;SR=1238|736;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	64618	.	G	A	0.794	PASS	NS=361;DP=2018;AC=1;AN=722;AF=0.001385;RA=2011;AA=3;SR=1263|748;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=4;SNP;TS
+20	64624	.	T	C	5.08	PASS	NS=364;DP=2000;AC=1;AN=728;AF=0.0013736;RA=1994;AA=3;SR=1238|756;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	64625	.	A	G	99.0	PASS	NS=363;DP=1995;AC=1;AN=726;AF=0.0013774;RA=1980;AA=7;SR=1229|751;SA=6|1;SB=0.85714;AB=0.5;ABR=5;ABA=5;RUN=1;SNP;TS
+20	64647	.	T	C	0.188	PASS	NS=362;DP=1911;AC=1;AN=724;AF=0.0013812;RA=1899;AA=5;SR=1157|742;SA=3|2;SB=0.6;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	64656	.	C	T	2.15	PASS	NS=368;DP=1875;AC=1;AN=736;AF=0.0013587;RA=1866;AA=3;SR=1113|753;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	64672	.	T	C	48.3	PASS	NS=365;DP=1877;AC=1;AN=730;AF=0.0013699;RA=1869;AA=5;SR=1097|772;SA=3|2;SB=0.6;AB=0.375;ABR=3;ABA=5;RUN=1;SNP;TS
+20	64771	.	A	G	0.563	PASS	NS=365;DP=2023;AC=1;AN=730;AF=0.0013699;RA=2017;AA=2;SR=1315|702;SA=1|1;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TS
+20	64898	.	G	A	49.7	PASS	NS=371;DP=2342;AC=1;AN=742;AF=0.0013477;RA=2329;AA=7;SR=1249|1080;SA=3|4;SB=0.42857;AB=0.14286;ABR=1;ABA=6;RUN=1;SNP;TS
+20	64913	.	G	T	0.846	PASS	NS=370;DP=2344;AC=1;AN=740;AF=0.0013514;RA=2333;AA=5;SR=1234|1099;SA=1|4;SB=0.2;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TV
+20	65122	.	T	C	1.23	PASS	NS=368;DP=2280;AC=1;AN=736;AF=0.0013587;RA=2265;AA=3;SR=976|1289;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	65173	.	C	G	12.2	PASS	NS=370;DP=2118;AC=1;AN=740;AF=0.0013514;RA=2104;AA=4;SR=947|1157;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	65240	.	G	A	89.4	PASS	NS=364;DP=2106;AC=2;AN=728;AF=0.0027473;RA=2087;AA=8;SR=941|1146;SA=0|8;SB=0;AB=0.25;ABR=2;ABA=6;RUN=1;SNP;TS
+20	65241	.	T	C	0.371	PASS	NS=364;DP=2101;AC=1;AN=728;AF=0.0013736;RA=2087;AA=8;SR=934|1153;SA=7|1;SB=0.875;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	65288	.	G	T	99.0	PASS	NS=364;DP=2003;AC=21;AN=728;AF=0.028846;RA=1924;AA=76;SR=915|1009;SA=29|47;SB=0.38158;AB=0.4963;ABR=67;ABA=68;RUN=1;SNP;TV
+20	65317	.	A	C	0.0806	PASS	NS=365;DP=1967;AC=1;AN=730;AF=0.0013699;RA=1957;AA=4;SR=954|1003;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	65335	.	T	G	99.0	PASS	NS=363;DP=1773;AC=12;AN=726;AF=0.016529;RA=1744;AA=22;SR=831|913;SA=11|11;SB=0.5;AB=0.46875;ABR=15;ABA=17;RUN=1;SNP;TV
+20	65338	.	A	T	0.813	PASS	NS=362;DP=1726;AC=1;AN=724;AF=0.0013812;RA=1715;AA=3;SR=799|916;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	65562	.	A	G	6.8	PASS	NS=325;DP=1375;AC=2;AN=650;AF=0.0030769;RA=1343;AA=4;SR=759|584;SA=2|2;SB=0.5;AB=0.7;ABR=7;ABA=3;RUN=1;SNP;TS
+20	65578	.	T	C	3.24	PASS	NS=327;DP=1379;AC=1;AN=654;AF=0.0015291;RA=1375;AA=3;SR=790|585;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	65632	.	C	T	40.9	PASS	NS=366;DP=1714;AC=1;AN=732;AF=0.0013661;RA=1703;AA=5;SR=918|785;SA=3|2;SB=0.6;AB=0.2;ABR=1;ABA=4;RUN=1;SNP;TS
+20	65850	.	G	A	0.111	PASS	NS=307;DP=1146;AC=1;AN=614;AF=0.0016287;RA=1128;AA=3;SR=696|432;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	65900	.	G	A	99.0	PASS	NS=325;DP=1412;AC=530;AN=650;AF=0.81538;RA=271;AA=1129;SR=145|126;SA=639|490;SB=0.56599;AB=0.47594;ABR=178;ABA=193;RUN=1;SNP;TS;CpG
+20	65986	.	G	A	8.36	PASS	NS=370;DP=2269;AC=3;AN=740;AF=0.0040541;RA=2255;AA=6;SR=1197|1058;SA=2|4;SB=0.33333;AB=0;ABR=0;ABA=2;RUN=2;SNP;TS
+20	66029	.	T	C	0.101	PASS	NS=339;DP=1544;AC=1;AN=678;AF=0.0014749;RA=1526;AA=7;SR=748|778;SA=6|1;SB=0.85714;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	66060	.	C	T	6.42	PASS	NS=324;DP=1304;AC=1;AN=648;AF=0.0015432;RA=1297;AA=3;SR=613|684;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	66248	.	C	T	12.0	PASS	NS=288;DP=1080;AC=1;AN=576;AF=0.0017361;RA=1074;AA=2;SR=440|634;SA=2|0;SB=1;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	66370	.	G	A	99.0	PASS	NS=262;DP=824;AC=404;AN=524;AF=0.77099;RA=185;AA=629;SR=79|106;SA=267|362;SB=0.42448;AB=0.55801;ABR=101;ABA=79;RUN=1;SNP;TS
+20	66388	.	C	T	0.809	PASS	NS=269;DP=809;AC=1;AN=538;AF=0.0018587;RA=798;AA=3;SR=351|447;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	66620	.	C	T	2.19	PASS	NS=338;DP=1326;AC=1;AN=676;AF=0.0014793;RA=1319;AA=3;SR=634|685;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=4;SNP;TS
+20	66705	.	C	T	4.94	PASS	NS=292;DP=835;AC=8;AN=584;AF=0.013699;RA=819;AA=10;SR=483|336;SA=3|7;SB=0.3;AB=0.5;ABR=6;ABA=6;RUN=1;SNP;TS
+20	66890	.	G	T	6.54	PASS	NS=313;DP=1102;AC=1;AN=626;AF=0.0015974;RA=1097;AA=4;SR=670|427;SA=3|1;SB=0.75;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	67080	.	A	G	0.371	PASS	NS=355;DP=1745;AC=1;AN=710;AF=0.0014085;RA=1732;AA=4;SR=907|825;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	67421	.	A	C	0.0555	PASS	NS=363;DP=1999;AC=1;AN=726;AF=0.0013774;RA=1990;AA=6;SR=945|1045;SA=4|2;SB=0.66667;AB=0.5;ABR=1;ABA=1;RUN=1;SNP;TV
+20	67461	.	A	G	99.0	PASS	NS=357;DP=1894;AC=4;AN=714;AF=0.0056022;RA=1872;AA=14;SR=841|1031;SA=8|6;SB=0.57143;AB=0.5;ABR=13;ABA=13;RUN=2;SNP;TS;CpG
+20	67563	.	A	G	3.64	PASS	NS=360;DP=1912;AC=1;AN=720;AF=0.0013889;RA=1904;AA=4;SR=1033|871;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TS
+20	67572	.	A	T	0.0602	PASS	NS=363;DP=1887;AC=1;AN=726;AF=0.0013774;RA=1871;AA=6;SR=1028|843;SA=1|5;SB=0.16667;AB=0.5;ABR=1;ABA=1;RUN=2;SNP;TV
+20	67573	.	C	T	4.67	PASS	NS=364;DP=1888;AC=1;AN=728;AF=0.0013736;RA=1878;AA=6;SR=1028|850;SA=3|3;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	67641	.	C	T	99.0	PASS	NS=364;DP=1910;AC=23;AN=728;AF=0.031593;RA=1837;AA=67;SR=897|940;SA=35|32;SB=0.52239;AB=0.52679;ABR=59;ABA=53;RUN=1;SNP;TS
+20	67644	.	T	C	40.4	PASS	NS=365;DP=1899;AC=2;AN=730;AF=0.0027397;RA=1887;AA=9;SR=933|954;SA=4|5;SB=0.44444;AB=0.44444;ABR=4;ABA=5;RUN=1;SNP;TS;CpG
+20	67646	.	G	A	3.98	PASS	NS=365;DP=1897;AC=1;AN=730;AF=0.0013699;RA=1877;AA=6;SR=923|954;SA=2|4;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	67752	.	T	A	0.292	PASS	NS=367;DP=2181;AC=2;AN=734;AF=0.0027248;RA=2163;AA=6;SR=1201|962;SA=3|3;SB=0.5;AB=0.82353;ABR=14;ABA=3;RUN=2;SNP;TV
+20	67760	.	C	T	67.6	PASS	NS=367;DP=2169;AC=1;AN=734;AF=0.0013624;RA=2152;AA=5;SR=1181|971;SA=2|3;SB=0.4;AB=0.33333;ABR=2;ABA=4;RUN=1;SNP;TS;CpG
+20	67765	.	C	T	99.0	PASS	NS=369;DP=2200;AC=3;AN=738;AF=0.004065;RA=2178;AA=11;SR=1201|977;SA=6|5;SB=0.54545;AB=0.42857;ABR=6;ABA=8;RUN=1;SNP;TS;CpG
+20	67831	.	C	T	0.781	PASS	NS=371;DP=2294;AC=1;AN=742;AF=0.0013477;RA=2281;AA=5;SR=1237|1044;SA=2|3;SB=0.4;AB=0;ABR=0;ABA=2;RUN=4;SNP;TS
+20	67949	.	G	T	10.4	PASS	NS=366;DP=2315;AC=1;AN=732;AF=0.0013661;RA=2282;AA=12;SR=1321|961;SA=2|10;SB=0.16667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	67976	.	T	A	0.679	PASS	NS=369;DP=2408;AC=1;AN=738;AF=0.001355;RA=2397;AA=6;SR=1299|1098;SA=2|4;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	68015	.	C	T	0.113	PASS	NS=369;DP=2466;AC=1;AN=738;AF=0.001355;RA=2453;AA=5;SR=1313|1140;SA=3|2;SB=0.6;AB=0.875;ABR=14;ABA=2;RUN=2;SNP;TS
+20	68055	.	A	G	0.102	PASS	NS=370;DP=2540;AC=1;AN=740;AF=0.0013514;RA=2522;AA=5;SR=1296|1226;SA=4|1;SB=0.8;AB=0.86667;ABR=13;ABA=2;RUN=1;SNP;TS
+20	68075	.	T	C	0.0657	PASS	NS=370;DP=2582;AC=1;AN=740;AF=0.0013514;RA=2562;AA=8;SR=1291|1271;SA=5|3;SB=0.625;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	68123	.	C	A	0.0592	PASS	NS=369;DP=2705;AC=1;AN=738;AF=0.001355;RA=2685;AA=13;SR=1300|1385;SA=11|2;SB=0.84615;AB=0.8;ABR=4;ABA=1;RUN=1;SNP;TV
+20	68182	.	A	T	99.0	PASS	NS=368;DP=2675;AC=2;AN=736;AF=0.0027174;RA=2653;AA=10;SR=1458|1195;SA=6|4;SB=0.6;AB=0.2;ABR=2;ABA=8;RUN=2;SNP;TV
+20	68190	.	T	C	0.109	PASS	NS=368;DP=2678;AC=1;AN=736;AF=0.0013587;RA=2661;AA=5;SR=1481|1180;SA=3|2;SB=0.6;AB=0.83333;ABR=10;ABA=2;RUN=3;SNP;TS
+20	68205	.	A	G	31.9	PASS	NS=369;DP=2686;AC=1;AN=738;AF=0.001355;RA=2672;AA=6;SR=1492|1180;SA=2|4;SB=0.33333;AB=0.57143;ABR=4;ABA=3;RUN=1;SNP;TS
+20	68264	.	T	C	99.0	PASS	NS=369;DP=2558;AC=98;AN=738;AF=0.13279;RA=2173;AA=376;SR=1055|1118;SA=202|174;SB=0.53723;AB=0.48951;ABR=280;ABA=292;RUN=1;SNP;TS
+20	68474	.	A	G	31.0	PASS	NS=370;DP=2532;AC=2;AN=740;AF=0.0027027;RA=2507;AA=14;SR=1171|1336;SA=2|12;SB=0.14286;AB=0.58333;ABR=7;ABA=5;RUN=1;SNP;TS
+20	68505	.	A	G	0.483	PASS	NS=369;DP=2490;AC=1;AN=738;AF=0.001355;RA=2477;AA=3;SR=1140|1337;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	68535	.	G	A	99.0	PASS	NS=369;DP=2573;AC=12;AN=738;AF=0.01626;RA=2503;AA=58;SR=1186|1317;SA=32|26;SB=0.55172;AB=0.50893;ABR=57;ABA=55;RUN=1;SNP;TS
+20	68618	.	G	A	99.0	PASS	NS=368;DP=2561;AC=21;AN=736;AF=0.028533;RA=2451;AA=93;SR=1224|1227;SA=48|45;SB=0.51613;AB=0.45517;ABR=66;ABA=78;RUN=1;SNP;TS
+20	68657	.	C	A	3.85	PASS	NS=370;DP=2602;AC=1;AN=740;AF=0.0013514;RA=2585;AA=9;SR=1214|1371;SA=6|3;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	68660	.	C	A	99.0	PASS	NS=370;DP=2608;AC=2;AN=740;AF=0.0027027;RA=2591;AA=14;SR=1221|1370;SA=8|6;SB=0.57143;AB=0.44;ABR=11;ABA=14;RUN=2;SNP;TV
+20	68664	.	A	C	0.0666	PASS	NS=370;DP=2602;AC=1;AN=740;AF=0.0013514;RA=2571;AA=12;SR=1212|1359;SA=6|6;SB=0.5;AB=0.5;ABR=1;ABA=1;RUN=1;SNP;TV
+20	68667	.	T	G	99.0	PASS	NS=370;DP=2607;AC=2;AN=740;AF=0.0027027;RA=2584;AA=15;SR=1201|1383;SA=5|10;SB=0.33333;AB=0.41176;ABR=7;ABA=10;RUN=2;SNP;TV
+20	68749	.	T	C	99.0	PASS	NS=368;DP=2323;AC=426;AN=736;AF=0.5788;RA=983;AA=1334;SR=457|526;SA=640|694;SB=0.47976;AB=0.47215;ABR=568;ABA=632;RUN=1;SNP;TS;CpG;HM3
+20	68799	.	T	C	1.55	PASS	NS=367;DP=2269;AC=2;AN=734;AF=0.0027248;RA=2213;AA=15;SR=1064|1149;SA=14|1;SB=0.93333;AB=0.66667;ABR=8;ABA=4;RUN=1;SNP;TS
+20	68815	.	C	T	0.275	PASS	NS=367;DP=2245;AC=1;AN=734;AF=0.0013624;RA=2226;AA=3;SR=1051|1175;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	68826	.	A	T	2.17	PASS	NS=370;DP=2244;AC=1;AN=740;AF=0.0013514;RA=2223;AA=5;SR=1043|1180;SA=4|1;SB=0.8;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	68926	.	T	C	0.43	PASS	NS=369;DP=2139;AC=2;AN=738;AF=0.00271;RA=2120;AA=4;SR=904|1216;SA=1|3;SB=0.25;AB=0.61538;ABR=8;ABA=3;RUN=1;SNP;TS
+20	68975	.	C	G	1.62	PASS	NS=367;DP=2121;AC=1;AN=734;AF=0.0013624;RA=2105;AA=4;SR=767|1338;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	68987	.	G	T	2.55	PASS	NS=369;DP=2074;AC=1;AN=738;AF=0.001355;RA=2059;AA=8;SR=732|1327;SA=3|5;SB=0.375;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	69049	.	T	A	0.201	PASS	NS=361;DP=2045;AC=1;AN=722;AF=0.001385;RA=2038;AA=5;SR=936|1102;SA=2|3;SB=0.4;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TV
+20	69066	.	C	G	14.2	PASS	NS=360;DP=2078;AC=3;AN=720;AF=0.0041667;RA=2069;AA=8;SR=1074|995;SA=1|7;SB=0.125;AB=0.45455;ABR=5;ABA=6;RUN=2;SNP;TV
+20	69094	.	G	A	99.0	PASS	NS=362;DP=2092;AC=318;AN=724;AF=0.43923;RA=1227;AA=857;SR=691|536;SA=451|406;SB=0.52625;AB=0.49681;ABR=389;ABA=392;RUN=1;SNP;TS;HM3
+20	69130	.	C	A	11.5	PASS	NS=365;DP=2014;AC=1;AN=730;AF=0.0013699;RA=2007;AA=3;SR=1082|925;SA=2|1;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	69145	.	A	G	0.195	PASS	NS=367;DP=1999;AC=2;AN=734;AF=0.0027248;RA=1991;AA=5;SR=1033|958;SA=3|2;SB=0.6;AB=0.7;ABR=7;ABA=3;RUN=2;SNP;TS;CpG
+20	69262	.	A	T	1.7	PASS	NS=365;DP=2053;AC=1;AN=730;AF=0.0013699;RA=2047;AA=3;SR=1145|902;SA=2|1;SB=0.66667;AB=0;ABR=0;ABA=2;RUN=3;SNP;TV
+20	69305	.	T	C	0.123	PASS	NS=367;DP=1964;AC=1;AN=734;AF=0.0013624;RA=1956;AA=3;SR=1101|855;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	69355	.	C	T	4.52	PASS	NS=367;DP=2009;AC=1;AN=734;AF=0.0013624;RA=2000;AA=3;SR=970|1030;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS;CpG
+20	69376	.	G	A	0.665	PASS	NS=367;DP=2085;AC=1;AN=734;AF=0.0013624;RA=2077;AA=3;SR=1003|1074;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TS
+20	69408	.	C	T	99.0	PASS	NS=366;DP=2154;AC=38;AN=732;AF=0.051913;RA=2013;AA=133;SR=894|1119;SA=60|73;SB=0.45113;AB=0.51685;ABR=138;ABA=128;RUN=1;SNP;TS;CpG
+20	69486	.	C	G	0.0652	PASS	NS=362;DP=1836;AC=1;AN=724;AF=0.0013812;RA=1820;AA=2;SR=1092|728;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	69641	.	C	A	0.0576	PASS	NS=367;DP=2135;AC=2;AN=734;AF=0.0027248;RA=2121;AA=8;SR=1038|1083;SA=6|2;SB=0.75;AB=0.8125;ABR=13;ABA=3;RUN=3;SNP;TV
+20	69656	.	T	C	0.253	PASS	NS=366;DP=2096;AC=1;AN=732;AF=0.0013661;RA=2090;AA=2;SR=1030|1060;SA=0|2;SB=0;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	69668	.	T	C	40.6	PASS	NS=365;DP=2114;AC=1;AN=730;AF=0.0013699;RA=2104;AA=6;SR=1026|1078;SA=4|2;SB=0.66667;AB=0.5;ABR=4;ABA=4;RUN=1;SNP;TS
+20	69707	.	T	A	0.375	PASS	NS=366;DP=2148;AC=1;AN=732;AF=0.0013661;RA=2143;AA=2;SR=1011|1132;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TV
+20	69723	.	T	A	0.883	PASS	NS=363;DP=2037;AC=1;AN=726;AF=0.0013774;RA=2026;AA=2;SR=945|1081;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	69752	.	A	C	1.31	PASS	NS=362;DP=1984;AC=1;AN=724;AF=0.0013812;RA=1977;AA=2;SR=932|1045;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	69821	.	A	T	0.479	PASS	NS=364;DP=1967;AC=1;AN=728;AF=0.0013736;RA=1960;AA=3;SR=958|1002;SA=3|0;SB=1;AB=0.75;ABR=6;ABA=2;RUN=4;SNP;TV
+20	69835	.	A	G	0.671	PASS	NS=363;DP=1953;AC=1;AN=726;AF=0.0013774;RA=1943;AA=5;SR=936|1007;SA=3|2;SB=0.6;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	69903	.	T	A	0.0459	PASS	NS=362;DP=1913;AC=1;AN=724;AF=0.0013812;RA=1904;AA=5;SR=821|1083;SA=3|2;SB=0.6;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	69951	.	A	T	0.159	PASS	NS=354;DP=1819;AC=2;AN=708;AF=0.0028249;RA=1810;AA=8;SR=774|1036;SA=6|2;SB=0.75;AB=0.78571;ABR=11;ABA=3;RUN=4;SNP;TV
+20	69966	.	T	C	0.661	PASS	NS=351;DP=1768;AC=2;AN=702;AF=0.002849;RA=1762;AA=4;SR=773|989;SA=2|2;SB=0.5;AB=0.76923;ABR=10;ABA=3;RUN=1;SNP;TS;CpG
+20	70470	.	A	G	4.57	PASS	NS=359;DP=1690;AC=1;AN=718;AF=0.0013928;RA=1681;AA=2;SR=1065|616;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	70490	.	C	T	0.934	PASS	NS=358;DP=1682;AC=5;AN=716;AF=0.0069832;RA=1665;AA=12;SR=962|703;SA=11|1;SB=0.91667;AB=0.2;ABR=1;ABA=4;RUN=5;SNP;TS
+20	70604	.	A	T	0.698	PASS	NS=360;DP=1795;AC=2;AN=720;AF=0.0027778;RA=1776;AA=10;SR=1075|701;SA=9|1;SB=0.9;AB=0.57143;ABR=4;ABA=3;RUN=4;SNP;TV
+20	70611	.	G	A	0.143	PASS	NS=362;DP=1806;AC=1;AN=724;AF=0.0013812;RA=1788;AA=5;SR=1077|711;SA=1|4;SB=0.2;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	70696	.	T	C	1.72	PASS	NS=365;DP=1849;AC=1;AN=730;AF=0.0013699;RA=1839;AA=4;SR=983|856;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	70785	.	A	G	99.0	PASS	NS=368;DP=1990;AC=14;AN=736;AF=0.019022;RA=1938;AA=40;SR=1005|933;SA=20|20;SB=0.5;AB=0.51852;ABR=42;ABA=38;RUN=1;SNP;TS
+20	70804	.	C	T	4.03	PASS	NS=369;DP=2057;AC=1;AN=738;AF=0.001355;RA=2042;AA=5;SR=1069|973;SA=2|3;SB=0.4;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	70917	.	T	C	1.54	PASS	NS=369;DP=2193;AC=1;AN=738;AF=0.001355;RA=2182;AA=2;SR=1110|1072;SA=1|1;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	70920	.	A	G	99.0	PASS	NS=368;DP=2172;AC=13;AN=736;AF=0.017663;RA=2121;AA=45;SR=1084|1037;SA=24|21;SB=0.53333;AB=0.38462;ABR=25;ABA=40;RUN=2;SNP;TS
+20	70980	.	G	A	99.0	PASS	NS=368;DP=2339;AC=39;AN=736;AF=0.052989;RA=2221;AA=106;SR=1223|998;SA=71|35;SB=0.66981;AB=0.57416;ABR=120;ABA=89;RUN=1;SNP;TS
+20	71013	.	A	C	0.0504	PASS	NS=371;DP=2390;AC=1;AN=742;AF=0.0013477;RA=2371;AA=12;SR=1359|1012;SA=2|10;SB=0.16667;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	71015	.	T	C	0.569	PASS	NS=371;DP=2398;AC=1;AN=742;AF=0.0013477;RA=2390;AA=5;SR=1364|1026;SA=4|1;SB=0.8;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TS
+20	71037	.	T	C	0.223	PASS	NS=369;DP=2289;AC=1;AN=738;AF=0.001355;RA=2279;AA=4;SR=1353|926;SA=3|1;SB=0.75;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	71079	.	C	T	99.0	PASS	NS=370;DP=2338;AC=60;AN=740;AF=0.081081;RA=2168;AA=166;SR=1421|747;SA=102|64;SB=0.61446;AB=0.53086;ABR=129;ABA=113;RUN=1;SNP;TS
+20	71093	.	G	A	99.0	PASS	NS=365;DP=2393;AC=93;AN=730;AF=0.1274;RA=2085;AA=299;SR=1382|703;SA=194|105;SB=0.64883;AB=0.5317;ABR=260;ABA=225;RUN=1;SNP;TS
+20	71281	.	G	A	66.6	PASS	NS=369;DP=2496;AC=2;AN=738;AF=0.00271;RA=2481;AA=11;SR=1273|1208;SA=4|7;SB=0.36364;AB=0.66667;ABR=12;ABA=6;RUN=1;SNP;TS;CpG
+20	71290	.	A	G	0.526	PASS	NS=368;DP=2466;AC=1;AN=736;AF=0.0013587;RA=2448;AA=4;SR=1262|1186;SA=1|3;SB=0.25;AB=0.81818;ABR=9;ABA=2;RUN=3;SNP;TS
+20	71454	.	T	C	0.691	PASS	NS=370;DP=2518;AC=1;AN=740;AF=0.0013514;RA=2498;AA=5;SR=1203|1295;SA=2|3;SB=0.4;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	71543	.	A	G	1.37	PASS	NS=369;DP=2378;AC=1;AN=738;AF=0.001355;RA=2369;AA=6;SR=1023|1346;SA=3|3;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=3;SNP;TS;CpG
+20	71549	.	G	T	99.0	PASS	NS=370;DP=2354;AC=49;AN=740;AF=0.066216;RA=2139;AA=210;SR=769|1370;SA=208|2;SB=0.99048;AB=0.68065;ABR=211;ABA=99;RUN=4;SNP;TV
+20	71726	.	C	A	5.19	PASS	NS=363;DP=2309;AC=1;AN=726;AF=0.0013774;RA=2301;AA=3;SR=1162|1139;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	71809	.	G	A	27.3	PASS	NS=354;DP=1947;AC=1;AN=708;AF=0.0014124;RA=1937;AA=3;SR=923|1014;SA=1|2;SB=0.33333;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS
+20	71850	.	T	C	0.131	PASS	NS=358;DP=2062;AC=1;AN=716;AF=0.0013966;RA=2055;AA=2;SR=1053|1002;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	71859	.	G	A	14.4	PASS	NS=355;DP=2030;AC=3;AN=710;AF=0.0042254;RA=2010;AA=7;SR=1055|955;SA=2|5;SB=0.28571;AB=0.5;ABR=4;ABA=4;RUN=1;SNP;TS;CpG
+20	71926	.	T	A	4.2	PASS	NS=336;DP=1791;AC=1;AN=672;AF=0.0014881;RA=1787;AA=2;SR=879|908;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	71929	.	T	A	0.237	PASS	NS=336;DP=1782;AC=1;AN=672;AF=0.0014881;RA=1773;AA=3;SR=875|898;SA=1|2;SB=0.33333;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TV
+20	72002	.	A	C	0.101	PASS	NS=340;DP=1976;AC=1;AN=680;AF=0.0014706;RA=1960;AA=10;SR=1100|860;SA=9|1;SB=0.9;AB=0.75;ABR=3;ABA=1;RUN=1;SNP;TV
+20	72036	.	G	A	99.0	PASS	NS=349;DP=2037;AC=6;AN=698;AF=0.008596;RA=2022;AA=11;SR=1106|916;SA=5|6;SB=0.45455;AB=0.60714;ABR=17;ABA=11;RUN=1;SNP;TS;CpG
+20	72206	.	T	G	1.43	PASS	NS=370;DP=2151;AC=1;AN=740;AF=0.0013514;RA=2144;AA=4;SR=1129|1015;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	72287	.	A	G	0.0526	PASS	NS=369;DP=2216;AC=1;AN=738;AF=0.001355;RA=2210;AA=2;SR=1016|1194;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	72331	.	T	A	0.125	PASS	NS=367;DP=2265;AC=1;AN=734;AF=0.0013624;RA=2246;AA=7;SR=1089|1157;SA=6|1;SB=0.85714;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	72406	.	C	T	0.0949	PASS	NS=366;DP=2205;AC=1;AN=732;AF=0.0013661;RA=2191;AA=2;SR=1075|1116;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	72570	.	C	A	2.37	PASS	NS=365;DP=1829;AC=1;AN=730;AF=0.0013699;RA=1810;AA=13;SR=969|841;SA=6|7;SB=0.46154;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	72604	.	A	G	2.22	PASS	NS=363;DP=2084;AC=1;AN=726;AF=0.0013774;RA=2079;AA=3;SR=1043|1036;SA=2|1;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	72632	.	G	T	99.0	PASS	NS=367;DP=2170;AC=21;AN=734;AF=0.02861;RA=2099;AA=67;SR=1017|1082;SA=36|31;SB=0.53731;AB=0.54167;ABR=65;ABA=55;RUN=2;SNP;TV
+20	72665	.	G	A	99.0	PASS	NS=365;DP=2216;AC=3;AN=730;AF=0.0041096;RA=2198;AA=11;SR=1006|1192;SA=3|8;SB=0.27273;AB=0.5;ABR=10;ABA=10;RUN=2;SNP;TS
+20	72719	.	C	T	99.0	PASS	NS=360;DP=2045;AC=12;AN=720;AF=0.016667;RA=2005;AA=33;SR=968|1037;SA=19|14;SB=0.57576;AB=0.52174;ABR=36;ABA=32;RUN=3;SNP;TS
+20	72747	.	T	A	0.163	PASS	NS=368;DP=2073;AC=1;AN=736;AF=0.0013587;RA=2062;AA=4;SR=1092|970;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TV
+20	72771	.	A	T	1.48	PASS	NS=371;DP=2071;AC=1;AN=742;AF=0.0013477;RA=2062;AA=3;SR=1149|913;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	72772	.	A	G	0.311	PASS	NS=371;DP=2065;AC=2;AN=742;AF=0.0026954;RA=2051;AA=5;SR=1145|906;SA=3|2;SB=0.6;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TS
+20	72815	.	T	C	25.8	PASS	NS=367;DP=2079;AC=2;AN=734;AF=0.0027248;RA=2062;AA=8;SR=1133|929;SA=4|4;SB=0.5;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TS
+20	72820	.	C	A	3.07	PASS	NS=366;DP=2061;AC=1;AN=732;AF=0.0013661;RA=2048;AA=5;SR=1097|951;SA=4|1;SB=0.8;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	72882	.	T	C	4.28	PASS	NS=369;DP=2031;AC=1;AN=738;AF=0.001355;RA=2013;AA=5;SR=914|1099;SA=4|1;SB=0.8;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	72887	.	A	G	2.42	PASS	NS=367;DP=2020;AC=1;AN=734;AF=0.0013624;RA=2004;AA=6;SR=906|1098;SA=4|2;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=3;SNP;TS
+20	72890	.	A	G	1.25	PASS	NS=366;DP=2018;AC=1;AN=732;AF=0.0013661;RA=2006;AA=3;SR=910|1096;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	72892	.	G	A	99.0	PASS	NS=365;DP=2011;AC=36;AN=730;AF=0.049315;RA=1913;AA=88;SR=863|1050;SA=43|45;SB=0.48864;AB=0.56647;ABR=98;ABA=73;RUN=5;SNP;TS
+20	72894	.	T	C	77.5	PASS	NS=365;DP=2035;AC=1;AN=730;AF=0.0013699;RA=2010;AA=11;SR=921|1089;SA=4|7;SB=0.36364;AB=0.14286;ABR=1;ABA=6;RUN=1;SNP;TS;CpG
+20	73014	.	C	G	12.4	PASS	NS=368;DP=2017;AC=1;AN=736;AF=0.0013587;RA=1989;AA=3;SR=858|1131;SA=2|1;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	73136	.	T	A	5.76	PASS	NS=282;DP=784;AC=3;AN=564;AF=0.0053191;RA=758;AA=7;SR=402|356;SA=5|2;SB=0.71429;AB=0;ABR=0;ABA=2;RUN=1;SNP;TV
+20	73268	.	G	T	0.0695	PASS	NS=346;DP=1716;AC=1;AN=692;AF=0.0014451;RA=1710;AA=4;SR=1061|649;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	73369	.	C	T	5.68	PASS	NS=365;DP=1955;AC=1;AN=730;AF=0.0013699;RA=1943;AA=6;SR=800|1143;SA=3|3;SB=0.5;AB=0.7;ABR=7;ABA=3;RUN=4;SNP;TS
+20	73416	.	C	T	0.0527	PASS	NS=362;DP=1908;AC=1;AN=724;AF=0.0013812;RA=1894;AA=3;SR=937|957;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	73431	.	C	G	1.76	PASS	NS=363;DP=1863;AC=1;AN=726;AF=0.0013774;RA=1856;AA=3;SR=950|906;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	73719	.	C	A	99.0	PASS	NS=277;DP=997;AC=18;AN=554;AF=0.032491;RA=964;AA=30;SR=443|521;SA=18|12;SB=0.6;AB=0.40909;ABR=9;ABA=13;RUN=1;SNP;TV
+20	73767	.	A	G	3.17	PASS	NS=284;DP=893;AC=1;AN=568;AF=0.0017606;RA=883;AA=3;SR=402|481;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	73852	.	T	G	99.0	PASS	NS=335;DP=1416;AC=7;AN=670;AF=0.010448;RA=1377;AA=28;SR=855|522;SA=8|20;SB=0.28571;AB=0.375;ABR=9;ABA=15;RUN=2;SNP;TV
+20	73858	.	C	T	96.7	PASS	NS=341;DP=1497;AC=9;AN=682;AF=0.013196;RA=1483;AA=13;SR=916|567;SA=8|5;SB=0.61538;AB=0.64516;ABR=20;ABA=11;RUN=1;SNP;TS
+20	73888	.	G	A	0.0568	PASS	NS=351;DP=1692;AC=1;AN=702;AF=0.0014245;RA=1679;AA=4;SR=945|734;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	73957	.	G	A	13.1	PASS	NS=368;DP=2167;AC=1;AN=736;AF=0.0013587;RA=2158;AA=3;SR=1176|982;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	74009	.	C	T	3.44	PASS	NS=369;DP=2230;AC=1;AN=738;AF=0.001355;RA=2224;AA=2;SR=1283|941;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	74053	.	A	T	6.52	PASS	NS=366;DP=2231;AC=1;AN=732;AF=0.0013661;RA=2219;AA=4;SR=1326|893;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	74073	.	T	A	0.0672	PASS	NS=365;DP=2246;AC=1;AN=730;AF=0.0013699;RA=2237;AA=2;SR=1302|935;SA=2|0;SB=1;AB=0.4;ABR=2;ABA=2;RUN=1;SNP;TV
+20	74142	.	A	G	0.849	PASS	NS=370;DP=2293;AC=1;AN=740;AF=0.0013514;RA=2273;AA=7;SR=1239|1034;SA=2|5;SB=0.28571;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TS
+20	74232	.	T	C	0.106	PASS	NS=366;DP=2368;AC=1;AN=732;AF=0.0013661;RA=2348;AA=6;SR=1206|1142;SA=5|1;SB=0.83333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	74247	.	T	C	99.0	PASS	NS=365;DP=2372;AC=1;AN=730;AF=0.0013699;RA=2353;AA=9;SR=1194|1159;SA=2|7;SB=0.22222;AB=0.3;ABR=3;ABA=7;RUN=1;SNP;TS;CpG
+20	74281	.	C	T	3.59	PASS	NS=366;DP=2430;AC=2;AN=732;AF=0.0027322;RA=2418;AA=5;SR=1176|1242;SA=1|4;SB=0.2;AB=0.33333;ABR=2;ABA=4;RUN=2;SNP;TS
+20	74297	.	A	T	0.214	PASS	NS=367;DP=2402;AC=1;AN=734;AF=0.0013624;RA=2379;AA=5;SR=1148|1231;SA=1|4;SB=0.2;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	74347	.	G	A	99.0	PASS	NS=371;DP=2504;AC=76;AN=742;AF=0.10243;RA=2237;AA=253;SR=1152|1085;SA=127|126;SB=0.50198;AB=0.52459;ABR=224;ABA=203;RUN=1;SNP;TS;HM3
+20	74355	.	G	T	0.613	PASS	NS=368;DP=2548;AC=1;AN=736;AF=0.0013587;RA=2530;AA=9;SR=1322|1208;SA=5|4;SB=0.55556;AB=0.8125;ABR=13;ABA=2;RUN=1;SNP;TV
+20	74545	.	T	A	1.96	PASS	NS=361;DP=2030;AC=3;AN=722;AF=0.0041551;RA=2012;AA=12;SR=933|1079;SA=4|8;SB=0.33333;AB=0.55;ABR=11;ABA=9;RUN=1;SNP;TV
+20	74595	.	G	C	0.696	PASS	NS=364;DP=2054;AC=1;AN=728;AF=0.0013736;RA=2046;AA=4;SR=1037|1009;SA=1|3;SB=0.25;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	74617	.	A	G	4.15	PASS	NS=365;DP=2159;AC=1;AN=730;AF=0.0013699;RA=2139;AA=6;SR=1030|1109;SA=5|1;SB=0.83333;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	74651	.	T	G	55.6	PASS	NS=367;DP=2262;AC=3;AN=734;AF=0.0040872;RA=2241;AA=12;SR=985|1256;SA=5|7;SB=0.41667;AB=0.46154;ABR=6;ABA=7;RUN=1;SNP;TV
+20	74747	.	C	T	0.125	PASS	NS=355;DP=2085;AC=2;AN=710;AF=0.0028169;RA=2069;AA=10;SR=1059|1010;SA=9|1;SB=0.9;AB=0.57143;ABR=4;ABA=3;RUN=2;SNP;TS
+20	74776	.	T	C	0.0648	PASS	NS=357;DP=2083;AC=1;AN=714;AF=0.0014006;RA=2066;AA=5;SR=1096|970;SA=2|3;SB=0.4;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	74801	.	T	C	0.234	PASS	NS=361;DP=1925;AC=1;AN=722;AF=0.001385;RA=1921;AA=2;SR=960|961;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	74873	.	T	A	0.0536	PASS	NS=337;DP=1479;AC=2;AN=674;AF=0.0029674;RA=1470;AA=4;SR=610|860;SA=2|2;SB=0.5;AB=0.7;ABR=7;ABA=3;RUN=2;SNP;TV
+20	74885	.	C	A	0.412	PASS	NS=342;DP=1549;AC=1;AN=684;AF=0.001462;RA=1540;AA=4;SR=692|848;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=5;SNP;TV
+20	74995	.	T	A	0.177	PASS	NS=365;DP=2238;AC=1;AN=730;AF=0.0013699;RA=2203;AA=16;SR=1233|970;SA=14|2;SB=0.875;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TV
+20	75003	.	T	A	0.703	PASS	NS=365;DP=2252;AC=1;AN=730;AF=0.0013699;RA=2235;AA=3;SR=1241|994;SA=2|1;SB=0.66667;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	75026	.	G	A	6.27	PASS	NS=361;DP=2078;AC=3;AN=722;AF=0.0041551;RA=2063;AA=9;SR=1109|954;SA=6|3;SB=0.66667;AB=0.6;ABR=6;ABA=4;RUN=1;SNP;TS
+20	75040	.	T	C	2.13	PASS	NS=367;DP=2087;AC=1;AN=734;AF=0.0013624;RA=2076;AA=3;SR=1074|1002;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	75245	.	T	A	3.0	PASS	NS=363;DP=2162;AC=1;AN=726;AF=0.0013774;RA=2150;AA=3;SR=1018|1132;SA=1|2;SB=0.33333;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	75254	.	C	A	99.0	PASS	NS=362;DP=2018;AC=255;AN=724;AF=0.35221;RA=1339;AA=657;SR=615|724;SA=345|312;SB=0.52511;AB=0.52083;ABR=450;ABA=401;RUN=2;SNP;TV;HM3
+20	75280	.	A	G	0.0778	PASS	NS=350;DP=1862;AC=1;AN=700;AF=0.0014286;RA=1823;AA=17;SR=786|1037;SA=0|17;SB=0;AB=0.5;ABR=1;ABA=1;RUN=1;SNP;TS
+20	75389	.	C	T	2.19	PASS	NS=361;DP=2144;AC=1;AN=722;AF=0.001385;RA=2136;AA=4;SR=1054|1082;SA=3|1;SB=0.75;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	75514	.	C	T	0.116	PASS	NS=369;DP=2263;AC=1;AN=738;AF=0.001355;RA=2248;AA=7;SR=1190|1058;SA=5|2;SB=0.71429;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TS
+20	75516	.	A	G	99.0	PASS	NS=369;DP=2296;AC=5;AN=738;AF=0.0067751;RA=2273;AA=14;SR=1217|1056;SA=3|11;SB=0.21429;AB=0.42105;ABR=8;ABA=11;RUN=1;SNP;TS
+20	75691	.	C	G	1.39	PASS	NS=370;DP=2164;AC=1;AN=740;AF=0.0013514;RA=2149;AA=6;SR=933|1216;SA=3|3;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	75729	.	C	G	99.0	PASS	NS=368;DP=2200;AC=13;AN=736;AF=0.017663;RA=2156;AA=37;SR=1063|1093;SA=19|18;SB=0.51351;AB=0.50667;ABR=38;ABA=36;RUN=1;SNP;TV
+20	75790	.	G	T	0.37	PASS	NS=366;DP=2147;AC=1;AN=732;AF=0.0013661;RA=2139;AA=5;SR=1124|1015;SA=1|4;SB=0.2;AB=0.6;ABR=3;ABA=2;RUN=4;SNP;TV
+20	75813	.	G	T	45.2	PASS	NS=367;DP=2170;AC=2;AN=734;AF=0.0027248;RA=2155;AA=11;SR=1100|1055;SA=3|8;SB=0.27273;AB=0.22222;ABR=2;ABA=7;RUN=2;SNP;TV
+20	75880	.	G	A	4.19	PASS	NS=369;DP=2153;AC=3;AN=738;AF=0.004065;RA=2139;AA=7;SR=1037|1102;SA=4|3;SB=0.57143;AB=0.5;ABR=5;ABA=5;RUN=3;SNP;TS
+20	75999	.	T	C	99.0	PASS	NS=371;DP=2394;AC=21;AN=742;AF=0.028302;RA=2315;AA=63;SR=1290|1025;SA=41|22;SB=0.65079;AB=0.50794;ABR=64;ABA=61;RUN=1;SNP;TS
+20	76282	.	G	A	2.2	PASS	NS=370;DP=2122;AC=1;AN=740;AF=0.0013514;RA=2113;AA=2;SR=1137|976;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	76316	.	T	G	0.0522	PASS	NS=353;DP=2029;AC=1;AN=706;AF=0.0014164;RA=2019;AA=6;SR=1099|920;SA=2|4;SB=0.33333;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TV
+20	76317	.	A	T	0.0577	PASS	NS=353;DP=2039;AC=1;AN=706;AF=0.0014164;RA=2028;AA=4;SR=1106|922;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=3;SNP;TV
+20	76388	.	G	A	99.0	PASS	NS=371;DP=2615;AC=3;AN=742;AF=0.0040431;RA=2588;AA=14;SR=1183|1405;SA=7|7;SB=0.5;AB=0.54167;ABR=13;ABA=11;RUN=1;SNP;TS;CpG
+20	76407	.	C	T	0.047	PASS	NS=369;DP=2638;AC=1;AN=738;AF=0.001355;RA=2620;AA=7;SR=1141|1479;SA=6|1;SB=0.85714;AB=0.5;ABR=1;ABA=1;RUN=3;SNP;TS
+20	76477	.	G	T	0.0468	PASS	NS=369;DP=2510;AC=1;AN=738;AF=0.001355;RA=2495;AA=8;SR=1108|1387;SA=7|1;SB=0.875;AB=0.83333;ABR=5;ABA=1;RUN=1;SNP;TV
+20	76519	.	T	C	55.2	PASS	NS=367;DP=2405;AC=1;AN=734;AF=0.0013624;RA=2395;AA=6;SR=1135|1260;SA=4|2;SB=0.66667;AB=0.44444;ABR=4;ABA=5;RUN=1;SNP;TS
+20	76526	.	G	A	97.7	PASS	NS=365;DP=2372;AC=1;AN=730;AF=0.0013699;RA=2355;AA=6;SR=1100|1255;SA=2|4;SB=0.33333;AB=0.625;ABR=10;ABA=6;RUN=1;SNP;TS
+20	76559	.	G	A	0.0519	PASS	NS=366;DP=2361;AC=1;AN=732;AF=0.0013661;RA=2351;AA=3;SR=1069|1282;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	76614	.	T	C	0.355	PASS	NS=364;DP=2186;AC=1;AN=728;AF=0.0013736;RA=2180;AA=2;SR=1061|1119;SA=1|1;SB=0.5;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	76631	.	T	A	0.135	PASS	NS=362;DP=2146;AC=1;AN=724;AF=0.0013812;RA=2138;AA=4;SR=1088|1050;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TV
+20	76668	.	T	C	0.299	PASS	NS=370;DP=2308;AC=1;AN=740;AF=0.0013514;RA=2288;AA=7;SR=1196|1092;SA=5|2;SB=0.71429;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	76669	.	T	A	3.27	PASS	NS=370;DP=2325;AC=1;AN=740;AF=0.0013514;RA=2319;AA=3;SR=1215|1104;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	76689	.	T	C	14.1	PASS	NS=369;DP=2386;AC=1;AN=738;AF=0.001355;RA=2371;AA=7;SR=1247|1124;SA=4|3;SB=0.57143;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TS
+20	76796	.	T	C	18.7	PASS	NS=368;DP=2408;AC=3;AN=736;AF=0.0040761;RA=2393;AA=9;SR=1269|1124;SA=6|3;SB=0.66667;AB=0.76667;ABR=23;ABA=7;RUN=1;SNP;TS
+20	76801	.	G	A	1.02	PASS	NS=364;DP=2385;AC=1;AN=728;AF=0.0013736;RA=2372;AA=4;SR=1252|1120;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	76915	.	A	G	99.0	PASS	NS=366;DP=2285;AC=3;AN=732;AF=0.0040984;RA=2256;AA=11;SR=1262|994;SA=8|3;SB=0.72727;AB=0.5;ABR=10;ABA=9;RUN=1;SNP;TS
+20	76920	.	G	A	65.7	PASS	NS=367;DP=2288;AC=2;AN=734;AF=0.0027248;RA=2276;AA=7;SR=1297|979;SA=5|2;SB=0.71429;AB=0.58824;ABR=10;ABA=7;RUN=2;SNP;TS
+20	76934	.	A	G	40.7	PASS	NS=368;DP=2253;AC=2;AN=736;AF=0.0027174;RA=2238;AA=6;SR=1276|962;SA=2|4;SB=0.33333;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TS
+20	76962	.	T	C	99.0	PASS	NS=369;DP=2127;AC=599;AN=738;AF=0.81165;RA=436;AA=1670;SR=226|210;SA=898|772;SB=0.53772;AB=0.51024;ABR=299;ABA=281;RUN=2;SNP;TS;CpG;HM3
+20	77013	.	C	T	47.1	PASS	NS=370;DP=2371;AC=2;AN=740;AF=0.0027027;RA=2361;AA=5;SR=1049|1312;SA=1|4;SB=0.2;AB=0.57143;ABR=8;ABA=5;RUN=1;SNP;TS;CpG
+20	77025	.	A	G	99.0	PASS	NS=370;DP=2398;AC=4;AN=740;AF=0.0054054;RA=2351;AA=24;SR=1035|1316;SA=5|19;SB=0.20833;AB=0.57143;ABR=24;ABA=18;RUN=1;SNP;TS;CpG
+20	77115	.	A	G	0.997	PASS	NS=371;DP=2355;AC=1;AN=742;AF=0.0013477;RA=2344;AA=4;SR=1291|1053;SA=1|3;SB=0.25;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	77225	.	T	C	0.928	PASS	NS=366;DP=2199;AC=1;AN=732;AF=0.0013661;RA=2192;AA=3;SR=986|1206;SA=2|1;SB=0.66667;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	77264	.	C	T	0.0587	PASS	NS=369;DP=2275;AC=1;AN=738;AF=0.001355;RA=2261;AA=5;SR=1054|1207;SA=3|2;SB=0.6;AB=0.8;ABR=4;ABA=1;RUN=1;SNP;TS
+20	77327	.	G	T	24.8	PASS	NS=367;DP=2294;AC=2;AN=734;AF=0.0027248;RA=2282;AA=10;SR=1172|1110;SA=6|4;SB=0.6;AB=0.6875;ABR=11;ABA=5;RUN=2;SNP;TV
+20	77393	.	G	A	32.7	PASS	NS=367;DP=2297;AC=1;AN=734;AF=0.0013624;RA=2277;AA=11;SR=1261|1016;SA=6|5;SB=0.54545;AB=0.5;ABR=4;ABA=4;RUN=3;SNP;TS;CpG
+20	77484	.	A	T	0.241	PASS	NS=369;DP=2290;AC=1;AN=738;AF=0.001355;RA=2283;AA=5;SR=1203|1080;SA=4|1;SB=0.8;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	77499	.	G	T	0.058	PASS	NS=369;DP=2269;AC=1;AN=738;AF=0.001355;RA=2260;AA=4;SR=1216|1044;SA=1|3;SB=0.25;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	77655	.	T	C	0.0462	PASS	NS=371;DP=2542;AC=1;AN=742;AF=0.0013477;RA=2533;AA=3;SR=1188|1345;SA=2|1;SB=0.66667;AB=0.83333;ABR=10;ABA=2;RUN=2;SNP;TS;CpG
+20	77816	.	G	A	99.0	PASS	NS=369;DP=2224;AC=16;AN=738;AF=0.02168;RA=2161;AA=45;SR=1004|1157;SA=21|24;SB=0.46667;AB=0.53571;ABR=45;ABA=37;RUN=1;SNP;TS
+20	77870	.	A	G	0.0585	PASS	NS=368;DP=2214;AC=1;AN=736;AF=0.0013587;RA=2176;AA=15;SR=836|1340;SA=3|12;SB=0.2;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TS
+20	77871	.	C	T	28.8	PASS	NS=368;DP=2215;AC=4;AN=736;AF=0.0054348;RA=2200;AA=11;SR=831|1369;SA=6|5;SB=0.54545;AB=0.75;ABR=9;ABA=3;RUN=1;SNP;TS;CpG
+20	77884	.	T	C	2.39	PASS	NS=369;DP=2325;AC=1;AN=738;AF=0.001355;RA=2308;AA=4;SR=832|1476;SA=3|1;SB=0.75;AB=0;ABR=0;ABA=2;RUN=2;SNP;TS;CpG
+20	77890	.	T	C	13.2	PASS	NS=369;DP=2347;AC=1;AN=738;AF=0.001355;RA=2324;AA=5;SR=842|1482;SA=3|2;SB=0.6;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	78254	.	C	T	99.0	PASS	NS=345;DP=1534;AC=11;AN=690;AF=0.015942;RA=1494;AA=34;SR=751|743;SA=18|16;SB=0.52941;AB=0.58824;ABR=50;ABA=34;RUN=1;SNP;TS
+20	78255	.	C	A	0.0735	PASS	NS=347;DP=1551;AC=1;AN=694;AF=0.0014409;RA=1538;AA=6;SR=774|764;SA=1|5;SB=0.16667;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	78266	.	T	A	0.136	PASS	NS=354;DP=1640;AC=1;AN=708;AF=0.0014124;RA=1632;AA=4;SR=840|792;SA=2|2;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TV
+20	78455	.	G	A	99.0	PASS	NS=342;DP=1209;AC=3;AN=684;AF=0.004386;RA=1190;AA=12;SR=657|533;SA=5|7;SB=0.41667;AB=0.45;ABR=9;ABA=11;RUN=1;SNP;TS;CpG
+20	78515	.	G	A	15.5	PASS	NS=201;DP=435;AC=1;AN=402;AF=0.0024876;RA=429;AA=2;SR=37|392;SA=0|2;SB=0;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	78691	.	T	G	0.408	PASS	NS=164;DP=352;AC=1;AN=328;AF=0.0030488;RA=346;AA=3;SR=10|336;SA=0|3;SB=0;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	79234	.	T	C	99.0	PASS	NS=185;DP=299;AC=221;AN=370;AF=0.5973;RA=126;AA=171;SR=83|43;SA=113|58;SB=0.66082;AB=0.57447;ABR=27;ABA=20;RUN=1;SNP;TS
+20	79509	.	A	G	6.23	PASS	NS=341;DP=1250;AC=1;AN=682;AF=0.0014663;RA=1242;AA=3;SR=618|624;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	79697	.	A	G	6.18	PASS	NS=129;DP=195;AC=1;AN=258;AF=0.003876;RA=191;AA=2;SR=53|138;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	79749	.	A	T	0.0964	PASS	NS=158;DP=301;AC=2;AN=316;AF=0.0063291;RA=290;AA=3;SR=117|173;SA=2|1;SB=0.66667;AB=0.5;ABR=3;ABA=3;RUN=1;SNP;TV
+20	79969	.	T	G	6.07	PASS	NS=214;DP=647;AC=1;AN=428;AF=0.0023364;RA=643;AA=2;SR=615|28;SA=2|0;SB=1;AB=0;ABR=0;ABA=2;RUN=2;SNP;TV
+20	80071	.	G	A	99.0	PASS	NS=299;DP=809;AC=271;AN=598;AF=0.45318;RA=473;AA=335;SR=453|20;SA=325|10;SB=0.97015;AB=0.53559;ABR=158;ABA=137;RUN=1;SNP;TS
+20	80079	.	G	A	27.1	PASS	NS=316;DP=898;AC=7;AN=632;AF=0.011076;RA=888;AA=8;SR=851|37;SA=6|2;SB=0.75;AB=0.73333;ABR=22;ABA=8;RUN=1;SNP;TS;CpG
+20	80095	.	A	G	0.0807	PASS	NS=324;DP=1080;AC=3;AN=648;AF=0.0046296;RA=1063;AA=7;SR=935|128;SA=4|3;SB=0.57143;AB=0.61538;ABR=8;ABA=5;RUN=2;SNP;TS
+20	80165	.	G	T	0.0494	PASS	NS=365;DP=2212;AC=1;AN=730;AF=0.0013699;RA=2191;AA=14;SR=1178|1013;SA=1|13;SB=0.071429;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	80174	.	A	T	0.633	PASS	NS=369;DP=2363;AC=1;AN=738;AF=0.001355;RA=2353;AA=2;SR=1187|1166;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TV
+20	80251	.	T	C	2.09	PASS	NS=369;DP=2247;AC=1;AN=738;AF=0.001355;RA=2212;AA=25;SR=1205|1007;SA=5|20;SB=0.2;AB=0.22222;ABR=2;ABA=7;RUN=3;SNP;TS
+20	80289	.	C	A	1.02	PASS	NS=367;DP=2183;AC=1;AN=734;AF=0.0013624;RA=2177;AA=3;SR=1321|856;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TV
+20	80359	.	T	C	0.834	PASS	NS=367;DP=2201;AC=1;AN=734;AF=0.0013624;RA=2177;AA=7;SR=1148|1029;SA=6|1;SB=0.85714;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	80448	.	A	G	0.782	PASS	NS=367;DP=2320;AC=1;AN=734;AF=0.0013624;RA=2310;AA=4;SR=1056|1254;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	80481	.	G	C	99.0	PASS	NS=368;DP=2442;AC=48;AN=736;AF=0.065217;RA=2286;AA=149;SR=1092|1194;SA=62|87;SB=0.41611;AB=0.50794;ABR=128;ABA=122;RUN=1;SNP;TV
+20	80497	.	G	T	0.851	PASS	NS=366;DP=2581;AC=1;AN=732;AF=0.0013661;RA=2572;AA=5;SR=1218|1354;SA=2|3;SB=0.4;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TV
+20	80513	.	C	G	25.9	PASS	NS=369;DP=2672;AC=1;AN=738;AF=0.001355;RA=2659;AA=6;SR=1308|1351;SA=3|3;SB=0.5;AB=0.33333;ABR=2;ABA=4;RUN=2;SNP;TV
+20	80525	.	C	A	0.0588	PASS	NS=365;DP=2634;AC=1;AN=730;AF=0.0013699;RA=2619;AA=5;SR=1324|1295;SA=3|2;SB=0.6;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	80655	.	A	G	99.0	PASS	NS=366;DP=2328;AC=646;AN=732;AF=0.88251;RA=331;AA=1993;SR=147|184;SA=829|1164;SB=0.41596;AB=0.56156;ABR=260;ABA=203;RUN=1;SNP;TS;HM3
+20	80725	.	T	A	8.94	PASS	NS=366;DP=2067;AC=1;AN=732;AF=0.0013661;RA=2061;AA=2;SR=1019|1042;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	80728	.	C	G	99.0	PASS	NS=366;DP=2029;AC=17;AN=732;AF=0.023224;RA=1969;AA=56;SR=983|986;SA=27|29;SB=0.48214;AB=0.5045;ABR=56;ABA=55;RUN=1;SNP;TV
+20	80838	.	C	T	76.1	PASS	NS=365;DP=2253;AC=1;AN=730;AF=0.0013699;RA=2239;AA=6;SR=953|1286;SA=1|5;SB=0.16667;AB=0.5;ABR=4;ABA=4;RUN=1;SNP;TS;CpG
+20	80856	.	C	G	0.0837	PASS	NS=363;DP=2218;AC=1;AN=726;AF=0.0013774;RA=2206;AA=4;SR=931|1275;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	80865	.	A	C	0.0761	PASS	NS=363;DP=2195;AC=1;AN=726;AF=0.0013774;RA=2187;AA=5;SR=937|1250;SA=4|1;SB=0.8;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	80887	.	G	A	58.7	PASS	NS=361;DP=2159;AC=1;AN=722;AF=0.001385;RA=2148;AA=6;SR=901|1247;SA=3|3;SB=0.5;AB=0.55556;ABR=5;ABA=4;RUN=1;SNP;TS
+20	81001	.	T	C	39.3	PASS	NS=364;DP=1961;AC=1;AN=728;AF=0.0013736;RA=1955;AA=3;SR=979|976;SA=3|0;SB=1;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS
+20	81017	.	C	T	0.602	PASS	NS=358;DP=1953;AC=1;AN=716;AF=0.0013966;RA=1946;AA=3;SR=966|980;SA=2|1;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	81071	.	A	G	99.0	PASS	NS=363;DP=1794;AC=6;AN=726;AF=0.0082645;RA=1756;AA=20;SR=873|883;SA=8|12;SB=0.4;AB=0.38462;ABR=10;ABA=16;RUN=1;SNP;TS
+20	81282	.	A	T	3.99	PASS	NS=361;DP=1909;AC=1;AN=722;AF=0.001385;RA=1900;AA=4;SR=1029|871;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	81297	.	T	A	9.74	PASS	NS=360;DP=1948;AC=1;AN=720;AF=0.0013889;RA=1931;AA=6;SR=1062|869;SA=4|2;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	81298	.	G	A	99.0	PASS	NS=360;DP=1942;AC=5;AN=720;AF=0.0069444;RA=1923;AA=17;SR=1058|865;SA=11|6;SB=0.64706;AB=0.40909;ABR=9;ABA=13;RUN=1;SNP;TS
+20	81481	.	A	G	0.751	PASS	NS=354;DP=1746;AC=1;AN=708;AF=0.0014124;RA=1737;AA=3;SR=786|951;SA=2|1;SB=0.66667;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	81550	.	G	T	13.7	PASS	NS=351;DP=1755;AC=1;AN=702;AF=0.0014245;RA=1750;AA=3;SR=809|941;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	81551	.	A	T	10.2	PASS	NS=350;DP=1763;AC=1;AN=700;AF=0.0014286;RA=1754;AA=2;SR=809|945;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	81561	.	A	G	0.396	PASS	NS=348;DP=1704;AC=1;AN=696;AF=0.0014368;RA=1696;AA=3;SR=816|880;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	81602	.	C	G	1.28	PASS	NS=348;DP=1658;AC=1;AN=696;AF=0.0014368;RA=1645;AA=3;SR=860|785;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	81679	.	T	G	4.28	PASS	NS=350;DP=1612;AC=1;AN=700;AF=0.0014286;RA=1602;AA=5;SR=664|938;SA=1|4;SB=0.2;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	81692	.	T	C	4.66	PASS	NS=347;DP=1557;AC=1;AN=694;AF=0.0014409;RA=1550;AA=5;SR=624|926;SA=1|4;SB=0.2;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	81715	.	C	G	5.01	PASS	NS=344;DP=1520;AC=1;AN=688;AF=0.0014535;RA=1513;AA=2;SR=584|929;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	81966	.	G	A	15.2	PASS	NS=187;DP=338;AC=1;AN=374;AF=0.0026738;RA=329;AA=4;SR=172|157;SA=4|0;SB=1;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS;CpG
+20	82012	.	T	C	57.6	PASS	NS=161;DP=273;AC=49;AN=322;AF=0.15217;RA=222;AA=41;SR=75|147;SA=16|25;SB=0.39024;AB=0.6;ABR=15;ABA=10;RUN=2;SNP;TS;CpG
+20	82119	.	G	A	1.23	PASS	NS=223;DP=490;AC=1;AN=446;AF=0.0022422;RA=486;AA=2;SR=322|164;SA=1|1;SB=0.5;AB=0;ABR=0;ABA=2;RUN=1;SNP;TS
+20	82168	.	G	A	0.0662	PASS	NS=223;DP=456;AC=1;AN=446;AF=0.0022422;RA=447;AA=3;SR=316|131;SA=2|1;SB=0.66667;AB=0;ABR=0;ABA=2;RUN=1;SNP;TS;CpG
+20	82204	.	T	C	60.6	PASS	NS=275;DP=670;AC=17;AN=550;AF=0.030909;RA=633;AA=23;SR=366|267;SA=16|7;SB=0.69565;AB=0.5;ABR=11;ABA=11;RUN=1;SNP;TS;CpG
+20	82215	.	G	A	99.0	PASS	NS=313;DP=849;AC=97;AN=626;AF=0.15495;RA=715;AA=126;SR=411|304;SA=85|41;SB=0.6746;AB=0.49645;ABR=70;ABA=71;RUN=1;SNP;TS;CpG
+20	82217	.	G	A	99.0	PASS	NS=314;DP=864;AC=493;AN=628;AF=0.78503;RA=182;AA=666;SR=108|74;SA=392|274;SB=0.58859;AB=0.46875;ABR=75;ABA=83;RUN=1;SNP;TS;CpG
+20	82223	.	C	T	99.0	PASS	NS=325;DP=994;AC=20;AN=650;AF=0.030769;RA=956;AA=34;SR=548|408;SA=18|16;SB=0.52941;AB=0.53488;ABR=23;ABA=19;RUN=1;SNP;TS
+20	82239	.	A	T	7.56	PASS	NS=344;DP=1299;AC=1;AN=688;AF=0.0014535;RA=1285;AA=2;SR=747|538;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	82258	.	A	G	14.1	PASS	NS=355;DP=1549;AC=2;AN=710;AF=0.0028169;RA=1536;AA=8;SR=883|653;SA=3|5;SB=0.375;AB=0.61538;ABR=8;ABA=5;RUN=3;SNP;TS
+20	82309	.	G	A	0.136	PASS	NS=356;DP=1542;AC=1;AN=712;AF=0.0014045;RA=1528;AA=6;SR=935|593;SA=3|3;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=5;SNP;TS
+20	82359	.	T	C	15.4	PASS	NS=365;DP=1749;AC=1;AN=730;AF=0.0013699;RA=1734;AA=8;SR=1094|640;SA=5|3;SB=0.625;AB=0.625;ABR=5;ABA=3;RUN=3;SNP;TS
+20	82415	.	A	C	23.9	PASS	NS=369;DP=1845;AC=1;AN=738;AF=0.001355;RA=1831;AA=10;SR=1068|763;SA=6|4;SB=0.6;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TV
+20	82416	.	T	C	99.0	PASS	NS=369;DP=1849;AC=16;AN=738;AF=0.02168;RA=1813;AA=31;SR=1060|753;SA=14|17;SB=0.45161;AB=0.57627;ABR=34;ABA=25;RUN=1;SNP;TS;HM3
+20	82446	.	C	G	59.2	PASS	NS=359;DP=1707;AC=1;AN=718;AF=0.0013928;RA=1700;AA=4;SR=909|791;SA=2|2;SB=0.5;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TV
+20	82460	.	C	T	9.05	PASS	NS=363;DP=1665;AC=1;AN=726;AF=0.0013774;RA=1657;AA=3;SR=856|801;SA=2|1;SB=0.66667;AB=0.25;ABR=1;ABA=3;RUN=2;SNP;TS
+20	82571	.	T	C	12.6	PASS	NS=351;DP=1817;AC=1;AN=702;AF=0.0014245;RA=1807;AA=4;SR=940|867;SA=3|1;SB=0.75;AB=0.5;ABR=3;ABA=3;RUN=1;SNP;TS
+20	82701	.	T	C	99.0	PASS	NS=351;DP=1848;AC=103;AN=702;AF=0.14672;RA=1578;AA=267;SR=848|730;SA=159|108;SB=0.59551;AB=0.5063;ABR=241;ABA=235;RUN=1;SNP;TS
+20	82729	.	G	C	7.54	PASS	NS=348;DP=1793;AC=1;AN=696;AF=0.0014368;RA=1782;AA=5;SR=948|834;SA=2|3;SB=0.4;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	82783	.	C	G	0.355	PASS	NS=364;DP=1952;AC=1;AN=728;AF=0.0013736;RA=1940;AA=3;SR=954|986;SA=1|2;SB=0.33333;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TV
+20	82898	.	C	T	99.0	PASS	NS=367;DP=2131;AC=3;AN=734;AF=0.0040872;RA=2111;AA=11;SR=1035|1076;SA=7|4;SB=0.63636;AB=0.68966;ABR=20;ABA=9;RUN=3;SNP;TS
+20	82923	.	T	A	0.244	PASS	NS=368;DP=2124;AC=1;AN=736;AF=0.0013587;RA=2113;AA=2;SR=1084|1029;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	82991	.	G	C	11.7	PASS	NS=367;DP=1988;AC=1;AN=734;AF=0.0013624;RA=1974;AA=3;SR=1070|904;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	83034	.	T	C	1.7	PASS	NS=367;DP=2054;AC=1;AN=734;AF=0.0013624;RA=2021;AA=8;SR=1049|972;SA=6|2;SB=0.75;AB=0;ABR=0;ABA=2;RUN=1;SNP;TS
+20	83129	.	A	G	0.056	PASS	NS=367;DP=2217;AC=1;AN=734;AF=0.0013624;RA=2204;AA=6;SR=1098|1106;SA=0|6;SB=0;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TS
+20	83154	.	C	G	0.0482	PASS	NS=368;DP=2149;AC=1;AN=736;AF=0.0013587;RA=2137;AA=6;SR=1070|1067;SA=3|3;SB=0.5;AB=0.5;ABR=1;ABA=1;RUN=1;SNP;TV
+20	83196	.	A	T	99.0	PASS	NS=368;DP=1931;AC=14;AN=736;AF=0.019022;RA=1884;AA=39;SR=936|948;SA=18|21;SB=0.46154;AB=0.47619;ABR=30;ABA=33;RUN=3;SNP;TV
+20	83231	.	G	A	2.47	PASS	NS=339;DP=1326;AC=1;AN=678;AF=0.0014749;RA=1312;AA=5;SR=685|627;SA=3|2;SB=0.6;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	83481	.	G	T	0.0764	PASS	NS=363;DP=2028;AC=1;AN=726;AF=0.0013774;RA=2017;AA=7;SR=858|1159;SA=3|4;SB=0.42857;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	83485	.	A	C	2.92	PASS	NS=363;DP=2053;AC=1;AN=726;AF=0.0013774;RA=2047;AA=4;SR=881|1166;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	83492	.	A	T	2.75	PASS	NS=361;DP=2031;AC=1;AN=722;AF=0.001385;RA=2016;AA=11;SR=866|1150;SA=9|2;SB=0.81818;AB=0.625;ABR=5;ABA=3;RUN=6;SNP;TV
+20	83501	.	G	A	0.105	PASS	NS=362;DP=2022;AC=1;AN=724;AF=0.0013812;RA=2015;AA=2;SR=889|1126;SA=1|1;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=3;SNP;TS
+20	83570	.	T	G	99.0	PASS	NS=366;DP=2101;AC=53;AN=732;AF=0.072404;RA=1942;AA=152;SR=1026|916;SA=88|64;SB=0.57895;AB=0.47685;ABR=103;ABA=113;RUN=3;SNP;TV
+20	83611	.	C	A	99.0	PASS	NS=367;DP=2005;AC=13;AN=734;AF=0.017711;RA=1959;AA=41;SR=1062|897;SA=20|21;SB=0.4878;AB=0.51852;ABR=42;ABA=38;RUN=1;SNP;TV
+20	83613	.	T	C	0.232	PASS	NS=367;DP=2011;AC=1;AN=734;AF=0.0013624;RA=2004;AA=4;SR=1083|921;SA=2|2;SB=0.5;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	83629	.	C	T	5.45	PASS	NS=363;DP=1970;AC=1;AN=726;AF=0.0013774;RA=1962;AA=3;SR=1038|924;SA=2|1;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS;CpG
+20	83666	.	G	T	0.202	PASS	NS=360;DP=1983;AC=1;AN=720;AF=0.0013889;RA=1977;AA=3;SR=1132|845;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	83732	.	A	T	0.0538	PASS	NS=369;DP=2058;AC=1;AN=738;AF=0.001355;RA=2035;AA=9;SR=1048|987;SA=1|8;SB=0.11111;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	83765	.	A	G	1.78	PASS	NS=369;DP=2031;AC=1;AN=738;AF=0.001355;RA=2018;AA=3;SR=1058|960;SA=2|1;SB=0.66667;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	83777	.	T	C	0.0484	PASS	NS=368;DP=2022;AC=1;AN=736;AF=0.0013587;RA=2013;AA=6;SR=1109|904;SA=6|0;SB=1;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	83819	.	A	T	1.79	PASS	NS=366;DP=2143;AC=1;AN=732;AF=0.0013661;RA=2133;AA=3;SR=1253|880;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	83929	.	G	A	99.0	PASS	NS=365;DP=2235;AC=2;AN=730;AF=0.0027397;RA=2216;AA=10;SR=999|1217;SA=2|8;SB=0.2;AB=0.61538;ABR=16;ABA=10;RUN=1;SNP;TS
+20	83934	.	C	T	0.265	PASS	NS=365;DP=2214;AC=1;AN=730;AF=0.0013699;RA=2192;AA=3;SR=983|1209;SA=2|1;SB=0.66667;AB=0.83333;ABR=10;ABA=2;RUN=2;SNP;TS
+20	83966	.	C	T	0.338	PASS	NS=370;DP=2246;AC=1;AN=740;AF=0.0013514;RA=2222;AA=6;SR=1045|1177;SA=4|2;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	83971	.	C	T	22.1	PASS	NS=368;DP=2238;AC=2;AN=736;AF=0.0027174;RA=2220;AA=11;SR=1057|1163;SA=7|4;SB=0.63636;AB=0.5;ABR=8;ABA=8;RUN=1;SNP;TS;CpG
+20	83996	.	C	G	99.0	PASS	NS=366;DP=2129;AC=25;AN=732;AF=0.034153;RA=2061;AA=56;SR=1024|1037;SA=22|34;SB=0.39286;AB=0.5283;ABR=56;ABA=50;RUN=1;SNP;TV
+20	84003	.	A	G	0.091	PASS	NS=365;DP=2098;AC=1;AN=730;AF=0.0013699;RA=2068;AA=12;SR=1047|1021;SA=1|11;SB=0.083333;AB=0.85714;ABR=12;ABA=2;RUN=1;SNP;TS
+20	84079	.	G	A	45.3	PASS	NS=360;DP=1898;AC=1;AN=720;AF=0.0013889;RA=1874;AA=10;SR=901|973;SA=7|3;SB=0.7;AB=0.44444;ABR=4;ABA=5;RUN=3;SNP;TS
+20	84201	.	G	A	99.0	PASS	NS=355;DP=1809;AC=4;AN=710;AF=0.0056338;RA=1784;AA=14;SR=830|954;SA=9|5;SB=0.64286;AB=0.5;ABR=11;ABA=11;RUN=2;SNP;TS
+20	84351	.	G	A	1.43	PASS	NS=363;DP=2151;AC=1;AN=726;AF=0.0013774;RA=2138;AA=4;SR=1159|979;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	84358	.	T	C	0.98	PASS	NS=360;DP=2134;AC=1;AN=720;AF=0.0013889;RA=2108;AA=13;SR=1150|958;SA=9|4;SB=0.69231;AB=0.8;ABR=12;ABA=3;RUN=1;SNP;TS
+20	84488	.	A	G	0.241	PASS	NS=365;DP=2176;AC=2;AN=730;AF=0.0027397;RA=2139;AA=9;SR=1014|1125;SA=3|6;SB=0.33333;AB=0.5;ABR=3;ABA=3;RUN=3;SNP;TS;CpG
+20	84499	.	G	A	27.9	PASS	NS=364;DP=2141;AC=1;AN=728;AF=0.0013736;RA=2118;AA=11;SR=1047|1071;SA=5|6;SB=0.45455;AB=0.55556;ABR=5;ABA=4;RUN=2;SNP;TS
+20	84504	.	G	A	35.0	PASS	NS=366;DP=2125;AC=3;AN=732;AF=0.0040984;RA=2098;AA=13;SR=1028|1070;SA=10|3;SB=0.76923;AB=0.36364;ABR=4;ABA=7;RUN=2;SNP;TS
+20	84666	.	G	A	99.0	PASS	NS=368;DP=2163;AC=3;AN=736;AF=0.0040761;RA=2140;AA=15;SR=1118|1022;SA=6|9;SB=0.4;AB=0.28571;ABR=4;ABA=10;RUN=4;SNP;TS;CpG
+20	84727	.	G	A	88.5	PASS	NS=371;DP=2412;AC=2;AN=742;AF=0.0026954;RA=2393;AA=10;SR=1261|1132;SA=4|6;SB=0.4;AB=0.5625;ABR=9;ABA=7;RUN=1;SNP;TS
+20	84892	.	C	T	99.0	PASS	NS=368;DP=2536;AC=8;AN=736;AF=0.01087;RA=2499;AA=25;SR=1170|1329;SA=12|13;SB=0.48;AB=0.55102;ABR=27;ABA=21;RUN=1;SNP;TS
+20	84906	.	T	C	99.0	PASS	NS=369;DP=2485;AC=7;AN=738;AF=0.0094851;RA=2422;AA=30;SR=1127|1295;SA=20|10;SB=0.66667;AB=0.58491;ABR=31;ABA=20;RUN=1;SNP;TS;CpG
+20	84934	.	C	T	0.156	PASS	NS=369;DP=2365;AC=1;AN=738;AF=0.001355;RA=2353;AA=4;SR=1081|1272;SA=3|1;SB=0.75;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	84937	.	T	A	0.102	PASS	NS=369;DP=2325;AC=2;AN=738;AF=0.00271;RA=2299;AA=11;SR=1060|1239;SA=3|8;SB=0.27273;AB=0.76923;ABR=10;ABA=3;RUN=2;SNP;TV
+20	84949	.	G	A	1.84	PASS	NS=369;DP=2295;AC=1;AN=738;AF=0.001355;RA=2281;AA=5;SR=1075|1206;SA=1|4;SB=0.2;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	85116	.	C	T	99.0	PASS	NS=367;DP=2259;AC=49;AN=734;AF=0.066757;RA=2119;AA=129;SR=989|1130;SA=54|75;SB=0.4186;AB=0.50679;ABR=112;ABA=106;RUN=1;SNP;TS
+20	85180	.	A	G	2.49	PASS	NS=366;DP=2123;AC=1;AN=732;AF=0.0013661;RA=2111;AA=3;SR=882|1229;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	85182	.	C	T	6.7	PASS	NS=365;DP=2111;AC=1;AN=730;AF=0.0013699;RA=2100;AA=2;SR=874|1226;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	85195	.	A	G	0.062	PASS	NS=354;DP=2020;AC=1;AN=708;AF=0.0014124;RA=2010;AA=5;SR=851|1159;SA=2|3;SB=0.4;AB=0.875;ABR=14;ABA=2;RUN=3;SNP;TS
+20	85371	.	A	G	3.11	PASS	NS=349;DP=2019;AC=1;AN=698;AF=0.0014327;RA=2008;AA=2;SR=1054|954;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	85388	.	G	A	2.07	PASS	NS=364;DP=2082;AC=1;AN=728;AF=0.0013736;RA=2071;AA=4;SR=1054|1017;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	85414	.	G	C	0.348	PASS	NS=369;DP=2163;AC=1;AN=738;AF=0.001355;RA=2147;AA=5;SR=1106|1041;SA=3|2;SB=0.6;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TV
+20	85492	.	T	C	2.17	PASS	NS=369;DP=2347;AC=1;AN=738;AF=0.001355;RA=2323;AA=6;SR=1170|1153;SA=4|2;SB=0.66667;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TS
+20	85530	.	G	A	1.82	PASS	NS=366;DP=1908;AC=1;AN=732;AF=0.0013661;RA=1900;AA=3;SR=984|916;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	85875	.	A	G	38.7	PASS	NS=357;DP=1986;AC=2;AN=714;AF=0.0028011;RA=1979;AA=6;SR=1078|901;SA=4|2;SB=0.66667;AB=0.44444;ABR=4;ABA=5;RUN=1;SNP;TS
+20	85937	.	G	C	99.0	PASS	NS=369;DP=2379;AC=3;AN=738;AF=0.004065;RA=2348;AA=15;SR=1362|986;SA=9|6;SB=0.6;AB=0.38095;ABR=8;ABA=13;RUN=1;SNP;TV
+20	86055	.	A	C	0.233	PASS	NS=369;DP=2109;AC=1;AN=738;AF=0.001355;RA=2095;AA=7;SR=1161|934;SA=5|2;SB=0.71429;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	86103	.	G	T	10.5	PASS	NS=355;DP=2067;AC=1;AN=710;AF=0.0014085;RA=2052;AA=6;SR=1129|923;SA=2|4;SB=0.33333;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TV
+20	86115	.	G	A	99.0	PASS	NS=356;DP=2026;AC=16;AN=712;AF=0.022472;RA=1969;AA=51;SR=1039|930;SA=28|23;SB=0.54902;AB=0.48837;ABR=42;ABA=44;RUN=1;SNP;TS;CpG
+20	86335	.	T	A	2.87	PASS	NS=357;DP=2032;AC=2;AN=714;AF=0.0028011;RA=2003;AA=17;SR=925|1078;SA=0|17;SB=0;AB=0.625;ABR=10;ABA=6;RUN=6;SNP;TV
+20	86458	.	C	T	0.0675	PASS	NS=362;DP=1974;AC=1;AN=724;AF=0.0013812;RA=1959;AA=2;SR=1098|861;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	86620	.	T	A	4.96	PASS	NS=368;DP=2381;AC=1;AN=736;AF=0.0013587;RA=2365;AA=3;SR=1199|1166;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	86691	.	C	T	0.306	PASS	NS=359;DP=2285;AC=1;AN=718;AF=0.0013928;RA=2274;AA=4;SR=1261|1013;SA=2|2;SB=0.5;AB=0.84615;ABR=11;ABA=2;RUN=1;SNP;TS
+20	86719	.	A	G	0.0505	PASS	NS=362;DP=2130;AC=1;AN=724;AF=0.0013812;RA=2108;AA=9;SR=1090|1018;SA=0|9;SB=0;AB=0.75;ABR=3;ABA=1;RUN=1;SNP;TS
+20	86757	.	A	G	2.16	PASS	NS=364;DP=2159;AC=1;AN=728;AF=0.0013736;RA=2147;AA=4;SR=1029|1118;SA=1|3;SB=0.25;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	86823	.	T	G	1.16	PASS	NS=360;DP=1894;AC=1;AN=720;AF=0.0013889;RA=1867;AA=9;SR=870|997;SA=1|8;SB=0.11111;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	87003	.	A	C	43.6	PASS	NS=357;DP=2114;AC=1;AN=714;AF=0.0014006;RA=2103;AA=10;SR=846|1257;SA=8|2;SB=0.8;AB=0.28571;ABR=2;ABA=5;RUN=1;SNP;TV
+20	87029	.	C	A	6.64	PASS	NS=353;DP=2097;AC=1;AN=706;AF=0.0014164;RA=2090;AA=5;SR=842|1248;SA=4|1;SB=0.8;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	87067	.	A	T	0.0727	PASS	NS=349;DP=1846;AC=1;AN=698;AF=0.0014327;RA=1839;AA=4;SR=850|989;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	87112	.	G	A	99.0	PASS	NS=350;DP=1657;AC=181;AN=700;AF=0.25857;RA=1252;AA=400;SR=740|512;SA=233|167;SB=0.5825;AB=0.51139;ABR=247;ABA=236;RUN=4;SNP;TS;CpG
+20	87230	.	G	A	0.205	PASS	NS=347;DP=1809;AC=4;AN=694;AF=0.0057637;RA=1779;AA=26;SR=812|967;SA=1|25;SB=0.038462;AB=0.71429;ABR=15;ABA=6;RUN=8;SNP;TS
+20	87254	.	C	T	99.0	PASS	NS=333;DP=1705;AC=3;AN=666;AF=0.0045045;RA=1687;AA=11;SR=755|932;SA=5|6;SB=0.45455;AB=0.5;ABR=4;ABA=4;RUN=2;SNP;TS
+20	87265	.	A	G	0.41	PASS	NS=335;DP=1686;AC=1;AN=670;AF=0.0014925;RA=1680;AA=3;SR=813|867;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	87313	.	A	G	1.57	PASS	NS=354;DP=1886;AC=1;AN=708;AF=0.0014124;RA=1880;AA=2;SR=941|939;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	87314	.	A	T	0.279	PASS	NS=354;DP=1882;AC=1;AN=708;AF=0.0014124;RA=1874;AA=3;SR=939|935;SA=2|1;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	87362	.	A	G	99.0	PASS	NS=345;DP=1823;AC=26;AN=690;AF=0.037681;RA=1732;AA=89;SR=879|853;SA=46|43;SB=0.51685;AB=0.46809;ABR=66;ABA=75;RUN=1;SNP;TS
+20	87416	.	A	C	99.0	PASS	NS=357;DP=1755;AC=511;AN=714;AF=0.71569;RA=537;AA=1217;SR=259|278;SA=650|567;SB=0.5341;AB=0.48414;ABR=290;ABA=309;RUN=3;SNP;TV;HM3
+20	87471	.	T	C	0.608	PASS	NS=349;DP=1783;AC=1;AN=698;AF=0.0014327;RA=1768;AA=5;SR=935|833;SA=1|4;SB=0.2;AB=0.86667;ABR=13;ABA=2;RUN=1;SNP;TS
+20	87555	.	T	A	0.0485	PASS	NS=355;DP=1728;AC=1;AN=710;AF=0.0014085;RA=1715;AA=7;SR=840|875;SA=0|7;SB=0;AB=0.75;ABR=6;ABA=2;RUN=5;SNP;TV
+20	87682	.	G	A	0.887	PASS	NS=355;DP=1823;AC=1;AN=710;AF=0.0014085;RA=1803;AA=4;SR=925|878;SA=2|2;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TS
+20	87790	.	C	T	99.0	PASS	NS=345;DP=1766;AC=16;AN=690;AF=0.023188;RA=1705;AA=49;SR=867|838;SA=32|17;SB=0.65306;AB=0.5102;ABR=50;ABA=46;RUN=2;SNP;TS
+20	88003	.	A	G	1.57	PASS	NS=343;DP=1528;AC=1;AN=686;AF=0.0014577;RA=1524;AA=3;SR=698|826;SA=2|1;SB=0.66667;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	88031	.	T	C	1.06	PASS	NS=347;DP=1727;AC=1;AN=694;AF=0.0014409;RA=1710;AA=4;SR=899|811;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	88058	.	T	C	0.444	PASS	NS=367;DP=2138;AC=1;AN=734;AF=0.0013624;RA=2122;AA=7;SR=1196|926;SA=4|3;SB=0.57143;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS;CpG
+20	88072	.	C	T	99.0	PASS	NS=372;DP=2307;AC=6;AN=744;AF=0.0080645;RA=2286;AA=17;SR=1310|976;SA=6|11;SB=0.35294;AB=0.54545;ABR=18;ABA=15;RUN=1;SNP;TS;CpG
+20	88123	.	C	T	0.301	PASS	NS=357;DP=2104;AC=1;AN=714;AF=0.0014006;RA=2091;AA=5;SR=1202|889;SA=3|2;SB=0.6;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS;CpG
+20	88155	.	T	C	99.0	PASS	NS=364;DP=2136;AC=17;AN=728;AF=0.023352;RA=2082;AA=41;SR=1144|938;SA=30|11;SB=0.73171;AB=0.60494;ABR=49;ABA=32;RUN=1;SNP;TS
+20	88162	.	G	A	47.4	PASS	NS=369;DP=2151;AC=1;AN=738;AF=0.001355;RA=2139;AA=7;SR=1175|964;SA=2|5;SB=0.28571;AB=0.61538;ABR=8;ABA=5;RUN=2;SNP;TS;CpG
+20	88320	.	A	T	0.798	PASS	NS=350;DP=1709;AC=1;AN=700;AF=0.0014286;RA=1700;AA=3;SR=1029|671;SA=1|2;SB=0.33333;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TV
+20	88565	.	A	G	0.361	PASS	NS=331;DP=1574;AC=1;AN=662;AF=0.0015106;RA=1565;AA=3;SR=773|792;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	88647	.	T	G	0.076	PASS	NS=363;DP=2151;AC=1;AN=726;AF=0.0013774;RA=2140;AA=4;SR=1060|1080;SA=0|4;SB=0;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	88750	.	T	C	5.86	PASS	NS=360;DP=1753;AC=1;AN=720;AF=0.0013889;RA=1747;AA=2;SR=887|860;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	88814	.	T	C	0.327	PASS	NS=335;DP=1461;AC=1;AN=670;AF=0.0014925;RA=1447;AA=4;SR=749|698;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TS
+20	88827	.	C	A	99.0	PASS	NS=328;DP=1379;AC=133;AN=656;AF=0.20274;RA=1086;AA=290;SR=531|555;SA=135|155;SB=0.46552;AB=0.4788;ABR=192;ABA=209;RUN=6;SNP;TV
+20	88874	.	C	T	3.41	PASS	NS=346;DP=1464;AC=1;AN=692;AF=0.0014451;RA=1450;AA=3;SR=694|756;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	88880	.	T	C	69.1	PASS	NS=352;DP=1515;AC=9;AN=704;AF=0.012784;RA=1470;AA=16;SR=727|743;SA=11|5;SB=0.6875;AB=0.6;ABR=21;ABA=13;RUN=1;SNP;TS
+20	88924	.	A	T	15.2	PASS	NS=357;DP=1741;AC=2;AN=714;AF=0.0028011;RA=1730;AA=6;SR=863|867;SA=3|3;SB=0.5;AB=0.5;ABR=5;ABA=5;RUN=2;SNP;TV
+20	89032	.	C	T	87.2	PASS	NS=356;DP=1715;AC=1;AN=712;AF=0.0014045;RA=1703;AA=6;SR=753|950;SA=4|2;SB=0.66667;AB=0.16667;ABR=1;ABA=5;RUN=1;SNP;TS;CpG
+20	89057	.	T	C	11.1	PASS	NS=346;DP=1555;AC=1;AN=692;AF=0.0014451;RA=1546;AA=2;SR=644|902;SA=2|0;SB=1;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	89061	.	C	T	3.13	PASS	NS=338;DP=1513;AC=1;AN=676;AF=0.0014793;RA=1503;AA=3;SR=618|885;SA=3|0;SB=1;AB=0.78571;ABR=11;ABA=3;RUN=1;SNP;TS
+20	89208	.	T	C	1.55	PASS	NS=348;DP=1527;AC=1;AN=696;AF=0.0014368;RA=1515;AA=2;SR=795|720;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	89322	.	C	G	0.0545	PASS	NS=296;DP=1182;AC=1;AN=592;AF=0.0016892;RA=1176;AA=2;SR=694|482;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	89442	.	G	T	0.338	PASS	NS=345;DP=1852;AC=1;AN=690;AF=0.0014493;RA=1844;AA=6;SR=1099|745;SA=3|3;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=3;SNP;TV
+20	89517	.	A	T	4.6	PASS	NS=360;DP=2035;AC=1;AN=720;AF=0.0013889;RA=2030;AA=2;SR=1134|896;SA=1|1;SB=0.5;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	89661	.	G	A	47.0	PASS	NS=366;DP=2184;AC=2;AN=732;AF=0.0027322;RA=2175;AA=5;SR=1085|1090;SA=4|1;SB=0.8;AB=0.55556;ABR=5;ABA=4;RUN=1;SNP;TS
+20	89739	.	T	A	0.145	PASS	NS=359;DP=1950;AC=2;AN=718;AF=0.0027855;RA=1928;AA=8;SR=951|977;SA=8|0;SB=1;AB=0.625;ABR=5;ABA=3;RUN=1;SNP;TV
+20	89750	.	G	T	0.157	PASS	NS=361;DP=1896;AC=1;AN=722;AF=0.001385;RA=1882;AA=10;SR=971|911;SA=7|3;SB=0.7;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TV
+20	89784	.	C	T	4.3	PASS	NS=350;DP=1854;AC=1;AN=700;AF=0.0014286;RA=1848;AA=3;SR=1005|843;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	89860	.	C	A	2.95	PASS	NS=371;DP=2493;AC=1;AN=742;AF=0.0013477;RA=2480;AA=9;SR=1216|1264;SA=3|6;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TV
+20	89871	.	T	G	3.36	PASS	NS=364;DP=2415;AC=1;AN=728;AF=0.0013736;RA=2403;AA=9;SR=1148|1255;SA=0|9;SB=0;AB=0.66667;ABR=6;ABA=3;RUN=3;SNP;TV
+20	90008	.	C	A	99.0	PASS	NS=346;DP=1902;AC=69;AN=692;AF=0.099711;RA=1671;AA=228;SR=919|752;SA=125|103;SB=0.54825;AB=0.48;ABR=168;ABA=182;RUN=4;SNP;TV
+20	90187	.	A	C	0.0959	PASS	NS=370;DP=2329;AC=1;AN=740;AF=0.0013514;RA=2306;AA=14;SR=1020|1286;SA=7|7;SB=0.5;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	90407	.	G	A	99.0	PASS	NS=368;DP=2398;AC=1;AN=736;AF=0.0013587;RA=2378;AA=11;SR=1117|1261;SA=3|8;SB=0.27273;AB=0.35714;ABR=5;ABA=9;RUN=2;SNP;TS;CpG
+20	90509	.	G	A	0.677	PASS	NS=370;DP=2346;AC=1;AN=740;AF=0.0013514;RA=2331;AA=2;SR=1216|1115;SA=1|1;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TS
+20	90541	.	C	T	99.0	PASS	NS=371;DP=2334;AC=4;AN=742;AF=0.0053908;RA=2300;AA=23;SR=1229|1071;SA=11|12;SB=0.47826;AB=0.41667;ABR=15;ABA=21;RUN=1;SNP;TS;CpG
+20	90542	.	G	A	0.692	PASS	NS=371;DP=2337;AC=1;AN=742;AF=0.0013477;RA=2318;AA=16;SR=1245|1073;SA=2|14;SB=0.125;AB=0.66667;ABR=6;ABA=3;RUN=3;SNP;TS;CpG
+20	90570	.	G	A	23.7	PASS	NS=370;DP=2343;AC=1;AN=740;AF=0.0013514;RA=2331;AA=6;SR=1221|1110;SA=3|3;SB=0.5;AB=0.42857;ABR=3;ABA=4;RUN=3;SNP;TS
+20	90628	.	G	T	6.52	PASS	NS=371;DP=2396;AC=1;AN=742;AF=0.0013477;RA=2379;AA=6;SR=1154|1225;SA=1|5;SB=0.16667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	90688	.	T	C	0.367	PASS	NS=370;DP=2304;AC=1;AN=740;AF=0.0013514;RA=2272;AA=15;SR=946|1326;SA=6|9;SB=0.4;AB=0.84615;ABR=11;ABA=2;RUN=2;SNP;TS
+20	90752	.	A	C	0.122	PASS	NS=370;DP=2411;AC=1;AN=740;AF=0.0013514;RA=2399;AA=6;SR=1210|1189;SA=6|0;SB=1;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	90795	.	C	T	0.18	PASS	NS=368;DP=2454;AC=1;AN=736;AF=0.0013587;RA=2443;AA=4;SR=1318|1125;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	90814	.	T	C	43.3	PASS	NS=368;DP=2403;AC=4;AN=736;AF=0.0054348;RA=2388;AA=10;SR=1294|1094;SA=4|6;SB=0.4;AB=0.6;ABR=12;ABA=8;RUN=1;SNP;TS
+20	90826	.	T	A	0.0721	PASS	NS=367;DP=2295;AC=1;AN=734;AF=0.0013624;RA=2287;AA=5;SR=1231|1056;SA=3|2;SB=0.6;AB=0.83333;ABR=10;ABA=2;RUN=4;SNP;TV
+20	90984	.	A	G	99.0	PASS	NS=361;DP=2035;AC=150;AN=722;AF=0.20776;RA=1619;AA=410;SR=766|853;SA=181|229;SB=0.44146;AB=0.5;ABR=331;ABA=330;RUN=1;SNP;TS;HM3
+20	91053	.	G	A	1.89	PASS	NS=361;DP=2062;AC=1;AN=722;AF=0.001385;RA=2051;AA=4;SR=1080|971;SA=3|1;SB=0.75;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	91072	.	G	A	9.59	PASS	NS=361;DP=2180;AC=1;AN=722;AF=0.001385;RA=2166;AA=8;SR=1078|1088;SA=1|7;SB=0.125;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	91088	.	C	T	99.0	PASS	NS=363;DP=2177;AC=616;AN=726;AF=0.84848;RA=386;AA=1782;SR=187|199;SA=833|949;SB=0.46745;AB=0.49684;ABR=236;ABA=239;RUN=1;SNP;TS
+20	91217	.	T	C	0.0587	PASS	NS=369;DP=2369;AC=2;AN=738;AF=0.00271;RA=2361;AA=5;SR=1348|1013;SA=3|2;SB=0.6;AB=0.8;ABR=12;ABA=3;RUN=1;SNP;TS;CpG
+20	91227	.	C	T	99.0	PASS	NS=369;DP=2355;AC=25;AN=738;AF=0.033875;RA=2274;AA=74;SR=1302|972;SA=44|30;SB=0.59459;AB=0.46018;ABR=52;ABA=61;RUN=3;SNP;TS
+20	91346	.	G	A	99.0	PASS	NS=369;DP=2207;AC=150;AN=738;AF=0.20325;RA=1744;AA=456;SR=974|770;SA=250|206;SB=0.54825;AB=0.49656;ABR=361;ABA=363;RUN=2;SNP;TS
+20	91474	.	C	A	0.361	PASS	NS=369;DP=2458;AC=1;AN=738;AF=0.001355;RA=2449;AA=4;SR=1260|1189;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=5;SNP;TV
+20	91497	.	A	G	0.291	PASS	NS=370;DP=2513;AC=1;AN=740;AF=0.0013514;RA=2504;AA=3;SR=1280|1224;SA=2|1;SB=0.66667;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS;CpG
+20	91508	.	G	A	99.0	PASS	NS=369;DP=2483;AC=621;AN=738;AF=0.84146;RA=424;AA=2039;SR=222|202;SA=1036|1003;SB=0.50809;AB=0.52604;ABR=303;ABA=270;RUN=1;SNP;TS;HM3
+20	91707	.	C	T	99.0	PASS	NS=369;DP=2273;AC=112;AN=738;AF=0.15176;RA=1930;AA=291;SR=948|982;SA=137|154;SB=0.47079;AB=0.53738;ABR=230;ABA=197;RUN=1;SNP;TS;HM3
+20	91716	.	C	T	99.0	PASS	NS=368;DP=2309;AC=6;AN=736;AF=0.0081522;RA=2285;AA=18;SR=1117|1168;SA=7|11;SB=0.38889;AB=0.60465;ABR=26;ABA=17;RUN=2;SNP;TS
+20	91718	.	C	T	61.6	PASS	NS=368;DP=2338;AC=3;AN=736;AF=0.0040761;RA=2322;AA=10;SR=1129|1193;SA=8|2;SB=0.8;AB=0.5;ABR=9;ABA=9;RUN=2;SNP;TS
+20	91778	.	T	A	2.05	PASS	NS=366;DP=2459;AC=1;AN=732;AF=0.0013661;RA=2444;AA=7;SR=1123|1321;SA=5|2;SB=0.71429;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TV
+20	91863	.	A	G	1.48	PASS	NS=364;DP=2501;AC=1;AN=728;AF=0.0013736;RA=2488;AA=4;SR=1261|1227;SA=3|1;SB=0.75;AB=0.6;ABR=3;ABA=2;RUN=4;SNP;TS
+20	91920	.	C	A	1.42	PASS	NS=368;DP=2547;AC=1;AN=736;AF=0.0013587;RA=2530;AA=6;SR=1225|1305;SA=3|3;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TV
+20	91937	.	T	A	15.2	PASS	NS=368;DP=2523;AC=1;AN=736;AF=0.0013587;RA=2492;AA=7;SR=1179|1313;SA=5|2;SB=0.71429;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	91951	.	G	A	99.0	PASS	NS=364;DP=2528;AC=3;AN=728;AF=0.0041209;RA=2504;AA=12;SR=1185|1319;SA=5|7;SB=0.41667;AB=0.62069;ABR=18;ABA=11;RUN=1;SNP;TS
+20	91971	.	G	A	99.0	PASS	NS=367;DP=2448;AC=4;AN=734;AF=0.0054496;RA=2412;AA=26;SR=1136|1276;SA=9|17;SB=0.34615;AB=0.54545;ABR=24;ABA=20;RUN=1;SNP;TS
+20	91987	.	A	C	2.61	PASS	NS=366;DP=2461;AC=1;AN=732;AF=0.0013661;RA=2447;AA=8;SR=1115|1332;SA=5|3;SB=0.625;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	91991	.	G	C	99.0	PASS	NS=367;DP=2461;AC=12;AN=734;AF=0.016349;RA=2421;AA=30;SR=1104|1317;SA=12|18;SB=0.4;AB=0.525;ABR=21;ABA=19;RUN=2;SNP;TV
+20	92037	.	G	T	18.0	PASS	NS=369;DP=2484;AC=1;AN=738;AF=0.001355;RA=2465;AA=11;SR=1128|1337;SA=6|5;SB=0.54545;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	92080	.	T	C	99.0	PASS	NS=363;DP=2461;AC=10;AN=726;AF=0.013774;RA=2425;AA=32;SR=1182|1243;SA=15|17;SB=0.46875;AB=0.46341;ABR=19;ABA=22;RUN=1;SNP;TS
+20	92091	.	C	A	3.93	PASS	NS=363;DP=2512;AC=1;AN=726;AF=0.0013774;RA=2502;AA=3;SR=1238|1264;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TV
+20	92171	.	T	G	0.0778	PASS	NS=361;DP=2344;AC=1;AN=722;AF=0.001385;RA=2332;AA=6;SR=1179|1153;SA=1|5;SB=0.16667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	92207	.	T	C	1.8	PASS	NS=360;DP=2413;AC=1;AN=720;AF=0.0013889;RA=2409;AA=2;SR=1146|1263;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS;CpG
+20	92366	.	A	G	99.0	PASS	NS=359;DP=2411;AC=131;AN=718;AF=0.18245;RA=1937;AA=464;SR=930|1007;SA=219|245;SB=0.47198;AB=0.50995;ABR=282;ABA=269;RUN=1;SNP;TS
+20	92383	.	T	C	0.775	PASS	NS=364;DP=2395;AC=1;AN=728;AF=0.0013736;RA=2377;AA=6;SR=1138|1239;SA=5|1;SB=0.83333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	92421	.	A	C	8.1	PASS	NS=366;DP=2327;AC=1;AN=732;AF=0.0013661;RA=2315;AA=6;SR=1224|1091;SA=5|1;SB=0.83333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	92441	.	T	C	2.12	PASS	NS=364;DP=2420;AC=1;AN=728;AF=0.0013736;RA=2406;AA=6;SR=1351|1055;SA=2|4;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	92492	.	G	A	0.0468	PASS	NS=366;DP=2377;AC=1;AN=732;AF=0.0013661;RA=2366;AA=2;SR=1174|1192;SA=1|1;SB=0.5;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TS
+20	92527	.	A	G	99.0	PASS	NS=371;DP=2105;AC=644;AN=742;AF=0.86792;RA=317;AA=1752;SR=144|173;SA=822|930;SB=0.46918;AB=0.51415;ABR=218;ABA=198;RUN=1;SNP;TS;CpG
+20	92712	.	T	C	0.198	PASS	NS=361;DP=2260;AC=1;AN=722;AF=0.001385;RA=2241;AA=10;SR=1190|1051;SA=6|4;SB=0.6;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	92774	.	T	C	0.403	PASS	NS=364;DP=2560;AC=1;AN=728;AF=0.0013736;RA=2548;AA=3;SR=1242|1306;SA=2|1;SB=0.66667;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TS
+20	92816	.	T	C	0.817	PASS	NS=369;DP=2431;AC=1;AN=738;AF=0.001355;RA=2407;AA=12;SR=1073|1334;SA=2|10;SB=0.16667;AB=0.77778;ABR=7;ABA=2;RUN=3;SNP;TS
+20	92865	.	T	C	10.2	PASS	NS=346;DP=2171;AC=2;AN=692;AF=0.0028902;RA=2155;AA=5;SR=1041|1114;SA=3|2;SB=0.6;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS;CpG
+20	92891	.	A	G	99.0	PASS	NS=353;DP=2023;AC=99;AN=706;AF=0.14023;RA=1744;AA=258;SR=877|867;SA=137|121;SB=0.53101;AB=0.47804;ABR=185;ABA=200;RUN=1;SNP;TS
+20	92972	.	G	A	9.84	PASS	NS=362;DP=2148;AC=1;AN=724;AF=0.0013812;RA=2140;AA=6;SR=1068|1072;SA=2|4;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	93066	.	C	T	0.0559	PASS	NS=356;DP=2150;AC=1;AN=712;AF=0.0014045;RA=2137;AA=3;SR=1048|1089;SA=1|2;SB=0.33333;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TS
+20	93114	.	C	T	0.601	PASS	NS=356;DP=2138;AC=1;AN=712;AF=0.0014045;RA=2132;AA=2;SR=970|1162;SA=1|1;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TS
+20	93169	.	C	T	99.0	PASS	NS=352;DP=2227;AC=25;AN=704;AF=0.035511;RA=2133;AA=88;SR=999|1134;SA=36|52;SB=0.40909;AB=0.44681;ABR=63;ABA=77;RUN=1;SNP;TS
+20	93175	.	C	A	0.159	PASS	NS=359;DP=2283;AC=1;AN=718;AF=0.0013928;RA=2272;AA=5;SR=1057|1215;SA=2|3;SB=0.4;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TV
+20	93327	.	T	C	99.0	PASS	NS=352;DP=1862;AC=25;AN=704;AF=0.035511;RA=1797;AA=60;SR=792|1005;SA=20|40;SB=0.33333;AB=0.53535;ABR=53;ABA=46;RUN=3;SNP;TS
+20	93343	.	T	C	1.43	PASS	NS=351;DP=1897;AC=1;AN=702;AF=0.0014245;RA=1886;AA=3;SR=804|1082;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	93356	.	C	T	0.0835	PASS	NS=365;DP=1919;AC=1;AN=730;AF=0.0013699;RA=1910;AA=2;SR=804|1106;SA=1|1;SB=0.5;AB=0.78571;ABR=11;ABA=2;RUN=1;SNP;TS
+20	93389	.	A	G	10.9	PASS	NS=361;DP=1775;AC=2;AN=722;AF=0.0027701;RA=1758;AA=5;SR=744|1014;SA=3|2;SB=0.6;AB=0.5;ABR=4;ABA=4;RUN=1;SNP;TS
+20	93406	.	T	C	99.0	PASS	NS=350;DP=1595;AC=7;AN=700;AF=0.01;RA=1573;AA=18;SR=651|922;SA=10|8;SB=0.55556;AB=0.55;ABR=22;ABA=18;RUN=1;SNP;TS
+20	93428	.	T	C	3.27	PASS	NS=334;DP=1422;AC=1;AN=668;AF=0.001497;RA=1415;AA=3;SR=565|850;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS;CpG
+20	93440	.	A	G	99.0	PASS	NS=327;DP=1360;AC=157;AN=654;AF=0.24006;RA=1041;AA=315;SR=395|646;SA=136|179;SB=0.43175;AB=0.50992;ABR=180;ABA=172;RUN=2;SNP;TS
+20	93499	.	T	C	99.0	PASS	NS=365;DP=1887;AC=82;AN=730;AF=0.11233;RA=1681;AA=203;SR=679|1002;SA=79|124;SB=0.38916;AB=0.48855;ABR=128;ABA=134;RUN=1;SNP;TS;CpG;HM3
+20	93684	.	A	G	60.8	PASS	NS=182;DP=336;AC=34;AN=364;AF=0.093407;RA=256;AA=30;SR=174|82;SA=19|11;SB=0.63333;AB=0.34783;ABR=8;ABA=14;RUN=1;SNP;TS;CpG
+20	93704	.	G	C	64.2	PASS	NS=230;DP=445;AC=12;AN=460;AF=0.026087;RA=428;AA=12;SR=245|183;SA=4|8;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	93718	.	T	C	99.0	PASS	NS=260;DP=565;AC=55;AN=520;AF=0.10577;RA=498;AA=64;SR=267|231;SA=37|27;SB=0.57812;AB=0.5;ABR=30;ABA=30;RUN=2;SNP;TS
+20	93739	.	A	G	99.0	PASS	NS=278;DP=706;AC=75;AN=556;AF=0.13489;RA=582;AA=91;SR=316|266;SA=55|36;SB=0.6044;AB=0.48235;ABR=41;ABA=44;RUN=1;SNP;TS;CpG
+20	93931	.	G	A	99.0	PASS	NS=325;DP=1064;AC=167;AN=650;AF=0.25692;RA=811;AA=248;SR=366|445;SA=126|122;SB=0.50806;AB=0.55128;ABR=129;ABA=105;RUN=1;SNP;TS
+20	94019	.	C	T	0.498	PASS	NS=360;DP=1907;AC=1;AN=720;AF=0.0013889;RA=1900;AA=5;SR=1175|725;SA=3|2;SB=0.6;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	94036	.	G	A	99.0	PASS	NS=355;DP=1929;AC=25;AN=710;AF=0.035211;RA=1850;AA=68;SR=1138|712;SA=44|24;SB=0.64706;AB=0.48958;ABR=47;ABA=49;RUN=1;SNP;TS
+20	94087	.	T	C	25.9	PASS	NS=364;DP=1913;AC=2;AN=728;AF=0.0027473;RA=1901;AA=7;SR=1020|881;SA=4|3;SB=0.57143;AB=0.5;ABR=4;ABA=4;RUN=2;SNP;TS;CpG
+20	94091	.	T	C	99.0	PASS	NS=363;DP=1926;AC=93;AN=726;AF=0.1281;RA=1686;AA=228;SR=919|767;SA=116|112;SB=0.50877;AB=0.4822;ABR=149;ABA=156;RUN=1;SNP;TS
+20	94179	.	G	A	9.12	PASS	NS=356;DP=1627;AC=1;AN=712;AF=0.0014045;RA=1617;AA=3;SR=942|675;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	94256	.	A	C	0.101	PASS	NS=355;DP=1594;AC=1;AN=710;AF=0.0014085;RA=1565;AA=4;SR=725|840;SA=3|1;SB=0.75;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	94307	.	C	A	8.46	PASS	NS=339;DP=1691;AC=1;AN=678;AF=0.0014749;RA=1675;AA=4;SR=703|972;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	94528	.	T	G	99.0	PASS	NS=349;DP=1836;AC=84;AN=698;AF=0.12034;RA=1656;AA=177;SR=898|758;SA=96|81;SB=0.54237;AB=0.52747;ABR=144;ABA=129;RUN=1;SNP;TV
+20	94588	.	G	A	0.244	PASS	NS=364;DP=2022;AC=2;AN=728;AF=0.0027473;RA=2006;AA=7;SR=1153|853;SA=5|2;SB=0.71429;AB=0.80952;ABR=17;ABA=3;RUN=1;SNP;TS
+20	94592	.	T	A	99.0	PASS	NS=365;DP=2021;AC=89;AN=730;AF=0.12192;RA=1806;AA=212;SR=1024|782;SA=123|89;SB=0.58019;AB=0.5216;ABR=169;ABA=155;RUN=3;SNP;TV
+20	94624	.	G	T	99.0	PASS	NS=361;DP=1991;AC=15;AN=722;AF=0.020776;RA=1949;AA=39;SR=1051|898;SA=25|14;SB=0.64103;AB=0.5;ABR=17;ABA=17;RUN=2;SNP;TV
+20	94704	.	G	A	99.0	PASS	NS=361;DP=2028;AC=2;AN=722;AF=0.0027701;RA=2015;AA=8;SR=958|1057;SA=4|4;SB=0.5;AB=0.41667;ABR=5;ABA=7;RUN=1;SNP;TS;CpG
+20	94717	.	T	C	57.7	PASS	NS=365;DP=1994;AC=1;AN=730;AF=0.0013699;RA=1985;AA=6;SR=926|1059;SA=4|2;SB=0.66667;AB=0.55556;ABR=5;ABA=4;RUN=1;SNP;TS
+20	94760	.	A	G	99.0	PASS	NS=356;DP=2012;AC=22;AN=712;AF=0.030899;RA=1957;AA=50;SR=987|970;SA=19|31;SB=0.38;AB=0.55046;ABR=60;ABA=48;RUN=2;SNP;TS
+20	94794	.	T	C	0.713	PASS	NS=365;DP=2100;AC=1;AN=730;AF=0.0013699;RA=2091;AA=2;SR=1072|1019;SA=1|1;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	94952	.	G	T	99.0	PASS	NS=360;DP=2103;AC=157;AN=720;AF=0.21806;RA=1678;AA=422;SR=854|824;SA=209|213;SB=0.49526;AB=0.49323;ABR=255;ABA=262;RUN=3;SNP;TV
+20	94973	.	T	A	0.162	PASS	NS=363;DP=2064;AC=1;AN=726;AF=0.0013774;RA=2059;AA=2;SR=1059|1000;SA=1|1;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	95052	.	T	C	54.2	PASS	NS=361;DP=1889;AC=1;AN=722;AF=0.001385;RA=1877;AA=5;SR=937|940;SA=2|3;SB=0.4;AB=0.33333;ABR=2;ABA=4;RUN=1;SNP;TS
+20	95093	.	T	G	99.0	PASS	NS=364;DP=1944;AC=95;AN=728;AF=0.13049;RA=1730;AA=212;SR=840|890;SA=99|113;SB=0.46698;AB=0.46619;ABR=131;ABA=150;RUN=1;SNP;TV
+20	95104	.	A	G	4.49	PASS	NS=362;DP=1930;AC=1;AN=724;AF=0.0013812;RA=1921;AA=3;SR=930|991;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	95186	.	T	C	6.33	PASS	NS=359;DP=1991;AC=1;AN=718;AF=0.0013928;RA=1986;AA=3;SR=977|1009;SA=1|2;SB=0.33333;AB=0;ABR=0;ABA=3;RUN=1;SNP;TS
+20	95249	.	C	G	1.12	PASS	NS=363;DP=1934;AC=1;AN=726;AF=0.0013774;RA=1923;AA=4;SR=955|968;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	95360	.	C	G	0.0671	PASS	NS=365;DP=2104;AC=1;AN=730;AF=0.0013699;RA=2088;AA=3;SR=1177|911;SA=2|1;SB=0.66667;AB=0.86667;ABR=13;ABA=2;RUN=1;SNP;TV
+20	95601	.	A	G	10.6	PASS	NS=368;DP=2205;AC=1;AN=736;AF=0.0013587;RA=2172;AA=14;SR=1077|1095;SA=2|12;SB=0.14286;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	95603	.	T	C	0.0469	PASS	NS=347;DP=1778;AC=1;AN=694;AF=0.0014409;RA=1758;AA=5;SR=858|900;SA=1|4;SB=0.2;AB=0.8;ABR=8;ABA=2;RUN=3;SNP;TS
+20	95619	.	C	T	33.4	PASS	NS=368;DP=2234;AC=2;AN=736;AF=0.0027174;RA=2205;AA=8;SR=1105|1100;SA=7|1;SB=0.875;AB=0.57143;ABR=8;ABA=6;RUN=1;SNP;TS
+20	95627	.	C	T	99.0	PASS	NS=368;DP=2216;AC=6;AN=736;AF=0.0081522;RA=2175;AA=22;SR=1082|1093;SA=10|12;SB=0.45455;AB=0.40541;ABR=15;ABA=21;RUN=1;SNP;TS;CpG
+20	95781	.	A	T	0.36	PASS	NS=363;DP=2225;AC=1;AN=726;AF=0.0013774;RA=2185;AA=10;SR=1083|1102;SA=6|4;SB=0.6;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	95836	.	T	C	5.74	PASS	NS=365;DP=2341;AC=1;AN=730;AF=0.0013699;RA=2320;AA=11;SR=1153|1167;SA=7|4;SB=0.63636;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	95989	.	C	T	0.0518	PASS	NS=364;DP=2264;AC=1;AN=728;AF=0.0013736;RA=2235;AA=5;SR=1159|1076;SA=4|1;SB=0.8;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	96026	.	C	T	83.3	PASS	NS=362;DP=2328;AC=2;AN=724;AF=0.0027624;RA=2304;AA=10;SR=1145|1159;SA=4|6;SB=0.4;AB=0.57895;ABR=11;ABA=8;RUN=2;SNP;TS
+20	96038	.	G	C	0.823	PASS	NS=362;DP=2311;AC=2;AN=724;AF=0.0027624;RA=2279;AA=19;SR=1095|1184;SA=9|10;SB=0.47368;AB=0.5;ABR=4;ABA=4;RUN=2;SNP;TV
+20	96141	.	T	C	0.0737	PASS	NS=367;DP=2161;AC=1;AN=734;AF=0.0013624;RA=2126;AA=13;SR=1101|1025;SA=13|0;SB=1;AB=0.75;ABR=3;ABA=1;RUN=1;SNP;TS;CpG
+20	96166	.	C	T	1.2	PASS	NS=367;DP=2187;AC=2;AN=734;AF=0.0027248;RA=2169;AA=7;SR=1101|1068;SA=3|4;SB=0.42857;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TS;CpG
+20	96213	.	C	A	0.0772	PASS	NS=359;DP=2247;AC=1;AN=718;AF=0.0013928;RA=2231;AA=8;SR=994|1237;SA=3|5;SB=0.375;AB=0.85714;ABR=12;ABA=2;RUN=1;SNP;TV
+20	96325	.	C	T	0.047	PASS	NS=364;DP=2278;AC=1;AN=728;AF=0.0013736;RA=2256;AA=8;SR=1018|1238;SA=5|3;SB=0.625;AB=0.8;ABR=4;ABA=1;RUN=1;SNP;TS
+20	96369	.	A	G	99.0	PASS	NS=366;DP=2148;AC=9;AN=732;AF=0.012295;RA=2087;AA=37;SR=1003|1084;SA=14|23;SB=0.37838;AB=0.5;ABR=21;ABA=20;RUN=2;SNP;TS;CpG
+20	96421	.	G	C	1.04	PASS	NS=363;DP=2132;AC=1;AN=726;AF=0.0013774;RA=2103;AA=12;SR=943|1160;SA=6|6;SB=0.5;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	96497	.	C	G	16.9	PASS	NS=362;DP=1926;AC=2;AN=724;AF=0.0027624;RA=1908;AA=6;SR=907|1001;SA=5|1;SB=0.83333;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TV
+20	96579	.	G	A	24.7	PASS	NS=359;DP=1704;AC=5;AN=718;AF=0.0069638;RA=1670;AA=17;SR=848|822;SA=9|8;SB=0.52941;AB=0.52632;ABR=10;ABA=9;RUN=1;SNP;TS
+20	96646	.	G	A	0.141	PASS	NS=364;DP=1850;AC=2;AN=728;AF=0.0027473;RA=1823;AA=6;SR=961|862;SA=4|2;SB=0.66667;AB=0.57143;ABR=4;ABA=3;RUN=2;SNP;TS
+20	96670	.	C	T	2.72	PASS	NS=366;DP=1963;AC=1;AN=732;AF=0.0013661;RA=1953;AA=4;SR=1050|903;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	96695	.	C	T	13.0	PASS	NS=364;DP=1927;AC=2;AN=728;AF=0.0027473;RA=1894;AA=13;SR=1024|870;SA=12|1;SB=0.92308;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TS
+20	96815	.	A	G	0.711	PASS	NS=371;DP=2127;AC=1;AN=742;AF=0.0013477;RA=2098;AA=18;SR=1051|1047;SA=1|17;SB=0.055556;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS;CpG
+20	96857	.	T	A	0.885	PASS	NS=366;DP=2378;AC=1;AN=732;AF=0.0013661;RA=2341;AA=12;SR=1217|1124;SA=11|1;SB=0.91667;AB=0.57143;ABR=4;ABA=2;RUN=3;SNP;TV
+20	96872	.	G	T	0.0924	PASS	NS=368;DP=2394;AC=1;AN=736;AF=0.0013587;RA=2385;AA=5;SR=1289|1096;SA=0|5;SB=0;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TV
+20	96891	.	C	T	4.45	PASS	NS=365;DP=2401;AC=1;AN=730;AF=0.0013699;RA=2387;AA=4;SR=1293|1094;SA=1|3;SB=0.25;AB=0;ABR=0;ABA=2;RUN=2;SNP;TS
+20	96923	.	C	A	99.0	PASS	NS=363;DP=2448;AC=20;AN=726;AF=0.027548;RA=2358;AA=85;SR=1286|1072;SA=56|29;SB=0.65882;AB=0.45385;ABR=59;ABA=71;RUN=2;SNP;TV
+20	96931	.	A	G	99.0	PASS	NS=365;DP=2424;AC=256;AN=730;AF=0.35068;RA=1586;AA=831;SR=882|704;SA=463|368;SB=0.55716;AB=0.50916;ABR=389;ABA=373;RUN=1;SNP;TS;CpG;HM3
+20	97048	.	G	T	0.0453	PASS	NS=367;DP=2268;AC=1;AN=734;AF=0.0013624;RA=2250;AA=9;SR=1094|1156;SA=2|7;SB=0.22222;AB=0.66667;ABR=2;ABA=1;RUN=2;SNP;TV
+20	97122	.	C	T	99.0	PASS	NS=366;DP=2087;AC=168;AN=732;AF=0.22951;RA=1606;AA=470;SR=818|788;SA=230|240;SB=0.48936;AB=0.49234;ABR=257;ABA=261;RUN=1;SNP;TS
+20	97227	.	A	C	87.6	PASS	NS=358;DP=1952;AC=2;AN=716;AF=0.0027933;RA=1912;AA=35;SR=1012|900;SA=33|2;SB=0.94286;AB=0.42857;ABR=6;ABA=8;RUN=2;SNP;TV
+20	97271	.	A	T	10.8	PASS	NS=367;DP=2260;AC=1;AN=734;AF=0.0013624;RA=2241;AA=3;SR=1067|1174;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	97285	.	T	C	0.442	PASS	NS=363;DP=2215;AC=1;AN=726;AF=0.0013774;RA=2169;AA=24;SR=1010|1159;SA=6|18;SB=0.25;AB=0.6;ABR=3;ABA=2;RUN=3;SNP;TS
+20	97371	.	G	A	99.0	PASS	NS=365;DP=2386;AC=16;AN=730;AF=0.021918;RA=2319;AA=54;SR=1350|969;SA=26|28;SB=0.48148;AB=0.48958;ABR=47;ABA=49;RUN=1;SNP;TS
+20	97394	.	A	G	99.0	PASS	NS=346;DP=2074;AC=185;AN=692;AF=0.26734;RA=1552;AA=509;SR=904|648;SA=280|229;SB=0.5501;AB=0.46933;ABR=176;ABA=199;RUN=2;SNP;TS;CpG
+20	97458	.	A	G	68.2	PASS	NS=365;DP=2315;AC=1;AN=730;AF=0.0013699;RA=2304;AA=7;SR=1121|1183;SA=3|4;SB=0.42857;AB=0.45455;ABR=5;ABA=6;RUN=2;SNP;TS
+20	97465	.	G	C	2.86	PASS	NS=365;DP=2309;AC=1;AN=730;AF=0.0013699;RA=2285;AA=9;SR=1111|1174;SA=1|8;SB=0.11111;AB=0.6;ABR=3;ABA=2;RUN=3;SNP;TV
+20	97526	.	C	G	0.0531	PASS	NS=370;DP=2381;AC=1;AN=740;AF=0.0013514;RA=2370;AA=2;SR=1223|1147;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	97564	.	T	G	0.0531	PASS	NS=369;DP=2445;AC=1;AN=738;AF=0.001355;RA=2425;AA=8;SR=1233|1192;SA=0|8;SB=0;AB=0.78571;ABR=11;ABA=3;RUN=1;SNP;TV
+20	97804	.	G	C	12.2	PASS	NS=367;DP=2119;AC=2;AN=734;AF=0.0027248;RA=2109;AA=4;SR=1004|1105;SA=3|1;SB=0.75;AB=0.6;ABR=6;ABA=4;RUN=1;SNP;TV
+20	97915	.	A	T	0.991	PASS	NS=359;DP=1872;AC=1;AN=718;AF=0.0013928;RA=1857;AA=5;SR=936|921;SA=1|4;SB=0.2;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	98008	.	T	C	99.0	PASS	NS=335;DP=1359;AC=19;AN=670;AF=0.028358;RA=1305;AA=48;SR=640|665;SA=24|24;SB=0.5;AB=0.48571;ABR=34;ABA=36;RUN=3;SNP;TS
+20	98061	.	G	T	0.0607	PASS	NS=331;DP=1432;AC=1;AN=662;AF=0.0015106;RA=1423;AA=5;SR=794|629;SA=3|2;SB=0.6;AB=0.9;ABR=18;ABA=2;RUN=1;SNP;TV
+20	98439	.	T	C	99.0	PASS	NS=369;DP=2319;AC=29;AN=738;AF=0.039295;RA=2221;AA=84;SR=1227|994;SA=55|29;SB=0.65476;AB=0.56627;ABR=94;ABA=71;RUN=1;SNP;TS
+20	98447	.	T	G	99.0	PASS	NS=371;DP=2416;AC=29;AN=742;AF=0.039084;RA=2311;AA=89;SR=1239|1072;SA=49|40;SB=0.55056;AB=0.52941;ABR=81;ABA=72;RUN=2;SNP;TV
+20	98491	.	C	T	99.0	PASS	NS=370;DP=2385;AC=2;AN=740;AF=0.0027027;RA=2364;AA=8;SR=1167|1197;SA=6|2;SB=0.75;AB=0.55556;ABR=10;ABA=8;RUN=1;SNP;TS
+20	98688	.	T	C	99.0	PASS	NS=362;DP=2160;AC=28;AN=724;AF=0.038674;RA=2090;AA=64;SR=1092|998;SA=29|35;SB=0.45312;AB=0.54839;ABR=68;ABA=55;RUN=2;SNP;TS;CpG
+20	98741	.	C	T	99.0	PASS	NS=367;DP=2469;AC=26;AN=734;AF=0.035422;RA=2377;AA=81;SR=1083|1294;SA=40|41;SB=0.49383;AB=0.51538;ABR=67;ABA=63;RUN=2;SNP;TS;CpG
+20	98792	.	G	C	99.0	PASS	NS=371;DP=2401;AC=32;AN=742;AF=0.043127;RA=2291;AA=92;SR=1124|1167;SA=41|51;SB=0.44565;AB=0.52632;ABR=80;ABA=70;RUN=1;SNP;TV
+20	98796	.	G	T	0.637	PASS	NS=369;DP=2424;AC=1;AN=738;AF=0.001355;RA=2407;AA=13;SR=1185|1222;SA=10|3;SB=0.76923;AB=0.72727;ABR=8;ABA=3;RUN=4;SNP;TV
+20	98905	.	T	C	0.0446	PASS	NS=368;DP=2477;AC=1;AN=736;AF=0.0013587;RA=2462;AA=9;SR=1319|1143;SA=3|6;SB=0.33333;AB=0.66667;ABR=2;ABA=1;RUN=1;SNP;TS
+20	98908	.	A	T	6.25	PASS	NS=370;DP=2483;AC=1;AN=740;AF=0.0013514;RA=2471;AA=7;SR=1328|1143;SA=3|4;SB=0.42857;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	98930	.	G	A	99.0	PASS	NS=370;DP=2431;AC=159;AN=740;AF=0.21486;RA=1920;AA=502;SR=1041|879;SA=269|233;SB=0.53586;AB=0.54773;ABR=350;ABA=287;RUN=1;SNP;TS
+20	98957	.	A	G	99.0	PASS	NS=370;DP=2423;AC=2;AN=740;AF=0.0027027;RA=2404;AA=13;SR=1270|1134;SA=6|7;SB=0.46154;AB=0.41176;ABR=7;ABA=10;RUN=1;SNP;TS
+20	98991	.	T	C	4.43	PASS	NS=370;DP=2386;AC=1;AN=740;AF=0.0013514;RA=2377;AA=3;SR=1217|1160;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=3;SNP;TS
+20	99132	.	G	T	0.374	PASS	NS=371;DP=2502;AC=1;AN=742;AF=0.0013477;RA=2492;AA=6;SR=1292|1200;SA=3|3;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TV
+20	99200	.	C	G	47.2	PASS	NS=368;DP=2476;AC=1;AN=736;AF=0.0013587;RA=2464;AA=5;SR=1140|1324;SA=2|3;SB=0.4;AB=0.33333;ABR=2;ABA=4;RUN=1;SNP;TV
+20	99228	.	C	T	48.9	PASS	NS=368;DP=2404;AC=4;AN=736;AF=0.0054348;RA=2382;AA=12;SR=1087|1295;SA=5|7;SB=0.41667;AB=0.5;ABR=9;ABA=9;RUN=4;SNP;TS
+20	99318	.	G	T	0.264	PASS	NS=368;DP=2147;AC=1;AN=736;AF=0.0013587;RA=2135;AA=8;SR=914|1221;SA=6|2;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	99500	.	C	A	99.0	PASS	NS=366;DP=2130;AC=35;AN=732;AF=0.047814;RA=2048;AA=75;SR=792|1256;SA=26|49;SB=0.34667;AB=0.512;ABR=64;ABA=60;RUN=1;SNP;TV
+20	99554	.	C	A	5.17	PASS	NS=365;DP=2104;AC=1;AN=730;AF=0.0013699;RA=2095;AA=4;SR=846|1249;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	99563	.	T	C	0.153	PASS	NS=365;DP=2130;AC=1;AN=730;AF=0.0013699;RA=2126;AA=3;SR=906|1220;SA=1|2;SB=0.33333;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	99612	.	A	G	1.43	PASS	NS=370;DP=2190;AC=1;AN=740;AF=0.0013514;RA=2185;AA=2;SR=1213|972;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TS
+20	99627	.	G	T	1.72	PASS	NS=369;DP=2210;AC=1;AN=738;AF=0.001355;RA=2203;AA=6;SR=1239|964;SA=3|3;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	99632	.	T	C	2.53	PASS	NS=369;DP=2206;AC=1;AN=738;AF=0.001355;RA=2197;AA=3;SR=1231|966;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	99653	.	C	A	0.0845	PASS	NS=366;DP=2296;AC=1;AN=732;AF=0.0013661;RA=2287;AA=5;SR=1195|1092;SA=3|2;SB=0.6;AB=0.77778;ABR=7;ABA=2;RUN=4;SNP;TV
+20	99667	.	C	T	99.0	PASS	NS=367;DP=2225;AC=5;AN=734;AF=0.006812;RA=2197;AA=21;SR=1101|1096;SA=9|12;SB=0.42857;AB=0.54545;ABR=24;ABA=20;RUN=1;SNP;TS
+20	99704	.	T	C	0.0612	PASS	NS=370;DP=2145;AC=1;AN=740;AF=0.0013514;RA=2141;AA=2;SR=997|1144;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	99734	.	C	T	0.0662	PASS	NS=366;DP=2113;AC=1;AN=732;AF=0.0013661;RA=2101;AA=6;SR=956|1145;SA=4|2;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	99801	.	G	A	99.0	PASS	NS=367;DP=1968;AC=88;AN=734;AF=0.11989;RA=1750;AA=214;SR=977|773;SA=103|111;SB=0.48131;AB=0.46021;ABR=133;ABA=154;RUN=1;SNP;TS
+20	99919	.	A	T	4.0	PASS	NS=359;DP=2099;AC=1;AN=718;AF=0.0013928;RA=2092;AA=2;SR=1038|1054;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	100030	.	G	T	2.4	PASS	NS=361;DP=1980;AC=1;AN=722;AF=0.001385;RA=1969;AA=9;SR=986|983;SA=6|3;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=3;SNP;TV
+20	100133	.	T	C	2.2	PASS	NS=359;DP=2041;AC=1;AN=718;AF=0.0013928;RA=2033;AA=3;SR=936|1097;SA=2|1;SB=0.66667;AB=0.8;ABR=8;ABA=2;RUN=2;SNP;TS
+20	100134	.	A	G	72.1	PASS	NS=360;DP=2052;AC=1;AN=720;AF=0.0013889;RA=2042;AA=5;SR=942|1100;SA=2|3;SB=0.4;AB=0.33333;ABR=2;ABA=4;RUN=1;SNP;TS
+20	100172	.	G	C	16.2	PASS	NS=356;DP=2127;AC=1;AN=712;AF=0.0014045;RA=2120;AA=2;SR=996|1124;SA=2|0;SB=1;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	100184	.	A	G	68.0	PASS	NS=360;DP=2141;AC=3;AN=720;AF=0.0041667;RA=2125;AA=12;SR=1021|1104;SA=4|8;SB=0.33333;AB=0.58824;ABR=10;ABA=7;RUN=1;SNP;TS;CpG
+20	100190	.	A	T	99.0	PASS	NS=360;DP=2144;AC=20;AN=720;AF=0.027778;RA=2093;AA=43;SR=1027|1066;SA=23|20;SB=0.53488;AB=0.56044;ABR=51;ABA=40;RUN=1;SNP;TV
+20	100272	.	C	T	99.0	PASS	NS=352;DP=1860;AC=85;AN=704;AF=0.12074;RA=1684;AA=174;SR=855|829;SA=90|84;SB=0.51724;AB=0.48826;ABR=104;ABA=109;RUN=6;SNP;TS
+20	100275	.	C	G	27.0	PASS	NS=354;DP=1879;AC=1;AN=708;AF=0.0014124;RA=1870;AA=5;SR=954|916;SA=2|3;SB=0.4;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TV
+20	100277	.	A	G	0.355	PASS	NS=351;DP=1863;AC=1;AN=702;AF=0.0014245;RA=1857;AA=3;SR=938|919;SA=0|3;SB=0;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TS;CpG
+20	100279	.	T	C	99.0	PASS	NS=349;DP=1846;AC=9;AN=698;AF=0.012894;RA=1829;AA=13;SR=926|903;SA=3|10;SB=0.23077;AB=0.52381;ABR=11;ABA=10;RUN=2;SNP;TS
+20	100308	.	A	G	5.47	PASS	NS=354;DP=1794;AC=1;AN=708;AF=0.0014124;RA=1781;AA=3;SR=814|967;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	100339	.	C	A	99.0	PASS	NS=356;DP=1834;AC=18;AN=712;AF=0.025281;RA=1785;AA=45;SR=760|1025;SA=16|29;SB=0.35556;AB=0.50667;ABR=38;ABA=37;RUN=2;SNP;TV
+20	100495	.	G	A	99.0	PASS	NS=359;DP=2056;AC=85;AN=718;AF=0.11838;RA=1866;AA=181;SR=948|918;SA=93|88;SB=0.51381;AB=0.548;ABR=137;ABA=113;RUN=1;SNP;TS
+20	100505	.	T	C	99.0	PASS	NS=357;DP=2026;AC=83;AN=714;AF=0.11625;RA=1853;AA=167;SR=909|944;SA=83|84;SB=0.49701;AB=0.57025;ABR=138;ABA=104;RUN=1;SNP;TS;HM3
+20	100515	.	T	A	1.58	PASS	NS=357;DP=1978;AC=1;AN=714;AF=0.0014006;RA=1971;AA=3;SR=933|1038;SA=0|3;SB=0;AB=0.77778;ABR=7;ABA=2;RUN=4;SNP;TV
+20	100537	.	C	A	8.5	PASS	NS=360;DP=1925;AC=1;AN=720;AF=0.0013889;RA=1910;AA=6;SR=851|1059;SA=4|2;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	100554	.	T	C	5.56	PASS	NS=361;DP=1910;AC=1;AN=722;AF=0.001385;RA=1902;AA=3;SR=827|1075;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	100564	.	T	C	0.454	PASS	NS=359;DP=1868;AC=1;AN=718;AF=0.0013928;RA=1865;AA=2;SR=825|1040;SA=1|1;SB=0.5;AB=0.81818;ABR=9;ABA=2;RUN=2;SNP;TS;CpG
+20	100569	.	A	G	0.0539	PASS	NS=353;DP=1836;AC=1;AN=706;AF=0.0014164;RA=1825;AA=3;SR=832|993;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TS
+20	100592	.	T	C	6.17	PASS	NS=350;DP=1763;AC=1;AN=700;AF=0.0014286;RA=1756;AA=3;SR=892|864;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	100645	.	C	T	99.0	PASS	NS=355;DP=1769;AC=2;AN=710;AF=0.0028169;RA=1753;AA=12;SR=929|824;SA=8|4;SB=0.66667;AB=0.42857;ABR=9;ABA=12;RUN=1;SNP;TS;CpG
+20	100678	.	C	T	99.0	PASS	NS=351;DP=1593;AC=77;AN=702;AF=0.10969;RA=1411;AA=177;SR=563|848;SA=177|0;SB=1;AB=0.69182;ABR=220;ABA=97;RUN=4;SNP;TS
+20	100699	.	C	T	99.0	PASS	NS=348;DP=1572;AC=178;AN=696;AF=0.25575;RA=1157;AA=387;SR=473|684;SA=178|209;SB=0.45995;AB=0.49265;ABR=201;ABA=204;RUN=2;SNP;TS;HM3
+20	100700	.	A	C	0.0548	PASS	NS=350;DP=1624;AC=1;AN=700;AF=0.0014286;RA=1609;AA=7;SR=721|888;SA=2|5;SB=0.28571;AB=0.5;ABR=1;ABA=1;RUN=4;SNP;TV
+20	100764	.	C	T	20.8	PASS	NS=353;DP=1810;AC=1;AN=706;AF=0.0014164;RA=1805;AA=3;SR=774|1031;SA=1|2;SB=0.33333;AB=0.5;ABR=3;ABA=3;RUN=1;SNP;TS
+20	100767	.	T	G	99.0	PASS	NS=355;DP=1827;AC=8;AN=710;AF=0.011268;RA=1795;AA=25;SR=765|1030;SA=6|19;SB=0.24;AB=0.45714;ABR=16;ABA=19;RUN=1;SNP;TV
+20	100816	.	A	G	1.13	PASS	NS=346;DP=1873;AC=1;AN=692;AF=0.0014451;RA=1867;AA=2;SR=836|1031;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	100854	.	T	A	93.6	PASS	NS=346;DP=1891;AC=1;AN=692;AF=0.0014451;RA=1877;AA=10;SR=914|963;SA=4|6;SB=0.4;AB=0.33333;ABR=4;ABA=8;RUN=2;SNP;TV
+20	100862	.	C	A	6.72	PASS	NS=347;DP=1913;AC=1;AN=694;AF=0.0014409;RA=1902;AA=4;SR=956|946;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	100881	.	T	C	0.499	PASS	NS=353;DP=1949;AC=1;AN=706;AF=0.0014164;RA=1943;AA=2;SR=1035|908;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	100904	.	T	C	4.63	PASS	NS=358;DP=1912;AC=1;AN=716;AF=0.0013966;RA=1906;AA=2;SR=1075|831;SA=1|1;SB=0.5;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	101020	.	T	C	1.07	PASS	NS=357;DP=1819;AC=1;AN=714;AF=0.0014006;RA=1807;AA=4;SR=962|845;SA=3|1;SB=0.75;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	101235	.	T	G	39.9	PASS	NS=365;DP=2094;AC=3;AN=730;AF=0.0041096;RA=2082;AA=8;SR=1042|1040;SA=4|4;SB=0.5;AB=0.41667;ABR=5;ABA=7;RUN=2;SNP;TV
+20	101355	.	T	C	99.0	PASS	NS=362;DP=2122;AC=25;AN=724;AF=0.03453;RA=2066;AA=51;SR=947|1119;SA=17|34;SB=0.33333;AB=0.58036;ABR=65;ABA=47;RUN=1;SNP;TS
+20	101362	.	G	A	99.0	PASS	NS=362;DP=2073;AC=86;AN=724;AF=0.11878;RA=1825;AA=242;SR=817|1008;SA=107|135;SB=0.44215;AB=0.54505;ABR=242;ABA=202;RUN=3;SNP;TS;HM3
+20	101437	.	C	T	99.0	PASS	NS=364;DP=1982;AC=21;AN=728;AF=0.028846;RA=1917;AA=58;SR=1001|916;SA=24|34;SB=0.41379;AB=0.46667;ABR=42;ABA=48;RUN=1;SNP;TS
+20	101449	.	A	G	99.0	PASS	NS=362;DP=1984;AC=1;AN=724;AF=0.0013812;RA=1971;AA=10;SR=1065|906;SA=5|5;SB=0.5;AB=0;ABR=0;ABA=10;RUN=1;SNP;TS
+20	101513	.	T	C	99.0	PASS	NS=364;DP=2010;AC=3;AN=728;AF=0.0041209;RA=1985;AA=11;SR=952|1033;SA=4|7;SB=0.36364;AB=0.47059;ABR=8;ABA=9;RUN=1;SNP;TS
+20	101515	.	G	A	25.8	PASS	NS=364;DP=1991;AC=1;AN=728;AF=0.0013736;RA=1979;AA=5;SR=946|1033;SA=3|2;SB=0.6;AB=0.5;ABR=4;ABA=4;RUN=2;SNP;TS
+20	101521	.	A	T	3.47	PASS	NS=365;DP=1956;AC=1;AN=730;AF=0.0013699;RA=1949;AA=3;SR=905|1044;SA=2|1;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	101567	.	A	G	31.0	PASS	NS=359;DP=1818;AC=1;AN=718;AF=0.0013928;RA=1808;AA=5;SR=875|933;SA=1|4;SB=0.2;AB=0.375;ABR=3;ABA=5;RUN=1;SNP;TS
+20	101590	.	C	A	0.0543	PASS	NS=355;DP=1773;AC=1;AN=710;AF=0.0014085;RA=1756;AA=9;SR=848|908;SA=1|8;SB=0.11111;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	101905	.	G	C	99.0	PASS	NS=370;DP=2159;AC=13;AN=740;AF=0.017568;RA=2107;AA=46;SR=1075|1032;SA=30|16;SB=0.65217;AB=0.46988;ABR=39;ABA=44;RUN=1;SNP;TV
+20	101918	.	C	T	99.0	PASS	NS=368;DP=2159;AC=29;AN=736;AF=0.039402;RA=2069;AA=83;SR=1068|1001;SA=46|37;SB=0.55422;AB=0.59296;ABR=118;ABA=80;RUN=3;SNP;TS
+20	102181	.	T	C	99.0	PASS	NS=370;DP=2299;AC=310;AN=740;AF=0.41892;RA=1354;AA=940;SR=740|614;SA=508|432;SB=0.54043;AB=0.51446;ABR=427;ABA=401;RUN=2;SNP;TS;HM3
+20	102203	.	T	C	99.0	PASS	NS=369;DP=2327;AC=7;AN=738;AF=0.0094851;RA=2305;AA=15;SR=1223|1082;SA=11|4;SB=0.73333;AB=0.72727;ABR=24;ABA=9;RUN=2;SNP;TS
+20	102205	.	A	G	7.9	PASS	NS=368;DP=2331;AC=2;AN=736;AF=0.0027174;RA=2314;AA=5;SR=1222|1092;SA=2|3;SB=0.4;AB=0.57143;ABR=4;ABA=3;RUN=1;SNP;TS
+20	102278	.	C	A	0.0803	PASS	NS=370;DP=2369;AC=1;AN=740;AF=0.0013514;RA=2353;AA=11;SR=1241|1112;SA=4|7;SB=0.36364;AB=0.76923;ABR=10;ABA=3;RUN=2;SNP;TV
+20	102312	.	A	G	39.1	PASS	NS=369;DP=2482;AC=1;AN=738;AF=0.001355;RA=2466;AA=6;SR=1292|1174;SA=3|3;SB=0.5;AB=0.63636;ABR=7;ABA=4;RUN=2;SNP;TS
+20	102387	.	C	A	0.0651	PASS	NS=372;DP=2764;AC=1;AN=744;AF=0.0013441;RA=2750;AA=8;SR=1316|1434;SA=3|5;SB=0.375;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TV
+20	102441	.	T	C	99.0	PASS	NS=370;DP=2720;AC=18;AN=740;AF=0.024324;RA=2616;AA=92;SR=1328|1288;SA=36|56;SB=0.3913;AB=0.51075;ABR=95;ABA=91;RUN=1;SNP;TS
+20	102464	.	G	C	99.0	PASS	NS=368;DP=2753;AC=4;AN=736;AF=0.0054348;RA=2720;AA=13;SR=1339|1381;SA=9|4;SB=0.69231;AB=0.56667;ABR=17;ABA=13;RUN=1;SNP;TV
+20	102485	.	A	G	0.539	PASS	NS=372;DP=2911;AC=1;AN=744;AF=0.0013441;RA=2902;AA=4;SR=1393|1509;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	102510	.	C	T	0.0965	PASS	NS=368;DP=2818;AC=1;AN=736;AF=0.0013587;RA=2807;AA=3;SR=1294|1513;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS;CpG
+20	102511	.	G	A	0.0598	PASS	NS=369;DP=2815;AC=1;AN=738;AF=0.001355;RA=2803;AA=6;SR=1297|1506;SA=5|1;SB=0.83333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	102519	.	G	A	9.8	PASS	NS=369;DP=2741;AC=1;AN=738;AF=0.001355;RA=2734;AA=4;SR=1271|1463;SA=1|3;SB=0.25;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	102524	.	A	G	99.0	PASS	NS=370;DP=2710;AC=31;AN=740;AF=0.041892;RA=2605;AA=99;SR=1195|1410;SA=45|54;SB=0.45455;AB=0.54082;ABR=106;ABA=90;RUN=1;SNP;TS
+20	102631	.	G	A	2.6	PASS	NS=367;DP=2311;AC=1;AN=734;AF=0.0013624;RA=2298;AA=4;SR=1160|1138;SA=1|3;SB=0.25;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	102760	.	A	G	0.319	PASS	NS=371;DP=2530;AC=1;AN=742;AF=0.0013477;RA=2521;AA=5;SR=1100|1421;SA=1|4;SB=0.2;AB=0.83333;ABR=10;ABA=2;RUN=2;SNP;TS
+20	102799	.	G	A	99.0	PASS	NS=367;DP=2411;AC=188;AN=734;AF=0.25613;RA=1818;AA=585;SR=812|1006;SA=250|335;SB=0.42735;AB=0.49346;ABR=377;ABA=383;RUN=1;SNP;TS
+20	103002	.	G	A	59.3	PASS	NS=365;DP=2072;AC=1;AN=730;AF=0.0013699;RA=2051;AA=6;SR=1068|983;SA=3|3;SB=0.5;AB=0.33333;ABR=2;ABA=4;RUN=1;SNP;TS
+20	103003	.	C	G	0.107	PASS	NS=365;DP=2089;AC=1;AN=730;AF=0.0013699;RA=2079;AA=2;SR=1075|1004;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	103119	.	T	C	5.14	PASS	NS=362;DP=2079;AC=1;AN=724;AF=0.0013812;RA=2070;AA=2;SR=950|1120;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	103308	.	A	T	99.0	PASS	NS=367;DP=1956;AC=21;AN=734;AF=0.02861;RA=1908;AA=46;SR=920|988;SA=23|23;SB=0.5;AB=0.56061;ABR=37;ABA=29;RUN=1;SNP;TV
+20	103351	.	C	A	99.0	PASS	NS=362;DP=2013;AC=23;AN=724;AF=0.031768;RA=1954;AA=58;SR=1062|892;SA=37|21;SB=0.63793;AB=0.49438;ABR=44;ABA=45;RUN=4;SNP;TV
+20	103487	.	A	G	99.0	PASS	NS=367;DP=2018;AC=26;AN=734;AF=0.035422;RA=1949;AA=62;SR=873|1076;SA=26|36;SB=0.41935;AB=0.52577;ABR=51;ABA=46;RUN=1;SNP;TS
+20	103517	.	A	T	99.0	PASS	NS=362;DP=1991;AC=307;AN=724;AF=0.42403;RA=1246;AA=741;SR=604|642;SA=340|401;SB=0.45884;AB=0.49821;ABR=278;ABA=279;RUN=1;SNP;TV
+20	103565	.	A	G	31.2	PASS	NS=360;DP=2009;AC=1;AN=720;AF=0.0013889;RA=2002;AA=5;SR=1066|936;SA=3|2;SB=0.6;AB=0;ABR=0;ABA=4;RUN=1;SNP;TS
+20	103642	.	C	G	99.0	PASS	NS=361;DP=1999;AC=90;AN=722;AF=0.12465;RA=1791;AA=200;SR=906|885;SA=106|94;SB=0.53;AB=0.50545;ABR=139;ABA=134;RUN=1;SNP;TV
+20	103645	.	T	C	3.37	PASS	NS=362;DP=1984;AC=1;AN=724;AF=0.0013812;RA=1980;AA=3;SR=1009|971;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	103659	.	T	G	0.587	PASS	NS=355;DP=1968;AC=1;AN=710;AF=0.0014085;RA=1961;AA=6;SR=994|967;SA=2|4;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	103694	.	C	T	9.34	PASS	NS=360;DP=2012;AC=1;AN=720;AF=0.0013889;RA=2005;AA=2;SR=1039|966;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	103722	.	T	C	3.92	PASS	NS=365;DP=2168;AC=1;AN=730;AF=0.0013699;RA=2161;AA=4;SR=1157|1004;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	103762	.	G	A	5.05	PASS	NS=367;DP=2133;AC=1;AN=734;AF=0.0013624;RA=2122;AA=2;SR=1144|978;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	103813	.	G	A	99.0	PASS	NS=362;DP=1974;AC=23;AN=724;AF=0.031768;RA=1909;AA=59;SR=1009|900;SA=35|24;SB=0.59322;AB=0.58779;ABR=77;ABA=54;RUN=1;SNP;TS
+20	103826	.	T	C	1.89	PASS	NS=360;DP=1939;AC=1;AN=720;AF=0.0013889;RA=1930;AA=2;SR=993|937;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	104114	.	G	C	99.0	PASS	NS=361;DP=2017;AC=4;AN=722;AF=0.0055402;RA=2002;AA=12;SR=921|1081;SA=3|9;SB=0.25;AB=0.5;ABR=11;ABA=11;RUN=1;SNP;TV
+20	104292	.	A	G	0.304	PASS	NS=360;DP=2180;AC=1;AN=720;AF=0.0013889;RA=2177;AA=2;SR=1102|1075;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS;CpG
+20	104330	.	A	T	0.0694	PASS	NS=366;DP=2128;AC=1;AN=732;AF=0.0013661;RA=2121;AA=3;SR=1033|1088;SA=1|2;SB=0.33333;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	104367	.	T	G	0.273	PASS	NS=366;DP=2220;AC=1;AN=732;AF=0.0013661;RA=2206;AA=8;SR=1142|1064;SA=5|3;SB=0.625;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	104402	.	T	G	0.435	PASS	NS=362;DP=2078;AC=1;AN=724;AF=0.0013812;RA=2064;AA=10;SR=1163|901;SA=1|9;SB=0.1;AB=0.6;ABR=3;ABA=2;RUN=3;SNP;TV
+20	104520	.	A	G	99.0	PASS	NS=366;DP=2249;AC=90;AN=732;AF=0.12295;RA=1999;AA=247;SR=942|1057;SA=126|121;SB=0.51012;AB=0.52493;ABR=200;ABA=181;RUN=2;SNP;TS
+20	104532	.	C	T	9.69	PASS	NS=370;DP=2249;AC=1;AN=740;AF=0.0013514;RA=2239;AA=3;SR=1069|1170;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	104534	.	T	C	99.0	PASS	NS=371;DP=2257;AC=27;AN=742;AF=0.036388;RA=2156;AA=93;SR=1027|1129;SA=49|44;SB=0.52688;AB=0.51852;ABR=84;ABA=78;RUN=1;SNP;TS
+20	104604	.	T	C	99.0	PASS	NS=364;DP=2148;AC=30;AN=728;AF=0.041209;RA=2078;AA=61;SR=1065|1013;SA=29|32;SB=0.47541;AB=0.52632;ABR=50;ABA=42;RUN=1;SNP;TS;CpG
+20	104610	.	C	A	0.102	PASS	NS=365;DP=2131;AC=1;AN=730;AF=0.0013699;RA=2113;AA=14;SR=1080|1033;SA=4|10;SB=0.28571;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	104716	.	C	A	0.52	PASS	NS=368;DP=2299;AC=1;AN=736;AF=0.0013587;RA=2289;AA=7;SR=1070|1219;SA=2|5;SB=0.28571;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TV
+20	104808	.	G	T	13.4	PASS	NS=361;DP=2053;AC=1;AN=722;AF=0.001385;RA=2046;AA=3;SR=998|1048;SA=2|1;SB=0.66667;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	104899	.	C	T	99.0	PASS	NS=358;DP=1718;AC=155;AN=716;AF=0.21648;RA=1331;AA=378;SR=675|656;SA=191|187;SB=0.50529;AB=0.49703;ABR=251;ABA=251;RUN=2;SNP;TS
+20	104902	.	T	A	0.0554	PASS	NS=358;DP=1715;AC=1;AN=716;AF=0.0013966;RA=1704;AA=4;SR=864|840;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	104959	.	G	C	4.15	PASS	NS=355;DP=1738;AC=1;AN=710;AF=0.0014085;RA=1728;AA=3;SR=833|895;SA=1|2;SB=0.33333;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TV
+20	105111	.	T	A	0.299	PASS	NS=353;DP=2057;AC=1;AN=706;AF=0.0014164;RA=2048;AA=2;SR=1090|958;SA=1|1;SB=0.5;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TV
+20	105131	.	T	C	0.314	PASS	NS=354;DP=1957;AC=1;AN=708;AF=0.0014124;RA=1953;AA=2;SR=1047|906;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	105239	.	A	C	7.74	PASS	NS=353;DP=1694;AC=1;AN=706;AF=0.0014164;RA=1682;AA=6;SR=893|789;SA=3|3;SB=0.5;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TV
+20	105359	.	G	T	85.9	PASS	NS=343;DP=1740;AC=3;AN=686;AF=0.0043732;RA=1730;AA=7;SR=780|950;SA=5|2;SB=0.71429;AB=0.5;ABR=7;ABA=7;RUN=1;SNP;TV
+20	105407	.	T	C	6.06	PASS	NS=347;DP=1867;AC=1;AN=694;AF=0.0014409;RA=1860;AA=2;SR=843|1017;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	105450	.	A	G	1.12	PASS	NS=353;DP=1846;AC=1;AN=706;AF=0.0014164;RA=1842;AA=2;SR=803|1039;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	105477	.	A	G	0.259	PASS	NS=350;DP=1929;AC=1;AN=700;AF=0.0014286;RA=1925;AA=2;SR=871|1054;SA=1|1;SB=0.5;AB=0.84615;ABR=11;ABA=2;RUN=1;SNP;TS
+20	105540	.	A	G	2.1	PASS	NS=348;DP=1862;AC=1;AN=696;AF=0.0014368;RA=1855;AA=4;SR=957|898;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	105930	.	G	T	11.5	PASS	NS=362;DP=2051;AC=1;AN=724;AF=0.0013812;RA=2038;AA=2;SR=1081|957;SA=1|1;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	106063	.	T	C	0.044	PASS	NS=362;DP=2061;AC=1;AN=724;AF=0.0013812;RA=2041;AA=5;SR=905|1136;SA=3|2;SB=0.6;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	106098	.	A	G	99.0	PASS	NS=362;DP=1933;AC=14;AN=724;AF=0.019337;RA=1875;AA=55;SR=915|960;SA=20|35;SB=0.36364;AB=0.43023;ABR=37;ABA=49;RUN=1;SNP;TS
+20	106169	.	A	C	5.1	PASS	NS=363;DP=1990;AC=1;AN=726;AF=0.0013774;RA=1985;AA=4;SR=1081|904;SA=4|0;SB=1;AB=0;ABR=0;ABA=2;RUN=1;SNP;TV
+20	106204	.	A	G	14.8	PASS	NS=367;DP=1984;AC=2;AN=734;AF=0.0027248;RA=1967;AA=6;SR=965|1002;SA=1|5;SB=0.16667;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TS
+20	106371	.	C	A	27.8	PASS	NS=357;DP=1931;AC=1;AN=714;AF=0.0014006;RA=1919;AA=9;SR=1070|849;SA=4|5;SB=0.44444;AB=0.33333;ABR=2;ABA=4;RUN=5;SNP;TV
+20	106411	.	C	A	99.0	PASS	NS=353;DP=1798;AC=6;AN=706;AF=0.0084986;RA=1782;AA=15;SR=908|874;SA=8|7;SB=0.53333;AB=0.5;ABR=13;ABA=13;RUN=3;SNP;TV
+20	106550	.	T	C	0.176	PASS	NS=348;DP=1664;AC=1;AN=696;AF=0.0014368;RA=1657;AA=3;SR=738|919;SA=2|1;SB=0.66667;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS;CpG
+20	106604	.	T	C	0.162	PASS	NS=359;DP=1894;AC=1;AN=718;AF=0.0013928;RA=1887;AA=3;SR=817|1070;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS;CpG
+20	106609	.	A	G	22.0	PASS	NS=360;DP=1886;AC=1;AN=720;AF=0.0013889;RA=1872;AA=5;SR=801|1071;SA=3|2;SB=0.6;AB=0;ABR=0;ABA=3;RUN=1;SNP;TS
+20	106613	.	A	G	99.0	PASS	NS=363;DP=1933;AC=17;AN=726;AF=0.023416;RA=1878;AA=52;SR=795|1083;SA=23|29;SB=0.44231;AB=0.45833;ABR=44;ABA=52;RUN=1;SNP;TS
+20	106635	.	G	A	99.0	PASS	NS=364;DP=1892;AC=261;AN=728;AF=0.35852;RA=1263;AA=626;SR=506|757;SA=246|380;SB=0.39297;AB=0.48309;ABR=300;ABA=321;RUN=1;SNP;TS;CpG
+20	107011	.	A	G	33.8	PASS	NS=303;DP=833;AC=1;AN=606;AF=0.0016502;RA=827;AA=4;SR=348|479;SA=2|2;SB=0.5;AB=0.5;ABR=3;ABA=3;RUN=1;SNP;TS
+20	107071	.	G	A	0.0548	PASS	NS=297;DP=963;AC=1;AN=594;AF=0.0016835;RA=954;AA=4;SR=622|332;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	107118	.	C	T	0.0477	PASS	NS=310;DP=1008;AC=3;AN=620;AF=0.0048387;RA=1002;AA=3;SR=698|304;SA=2|1;SB=0.66667;AB=0;ABR=0;ABA=1;RUN=1;SNP;TS
+20	107120	.	T	G	11.1	PASS	NS=306;DP=986;AC=1;AN=612;AF=0.001634;RA=974;AA=7;SR=677|297;SA=2|5;SB=0.28571;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	107152	.	A	G	38.9	PASS	NS=307;DP=943;AC=5;AN=614;AF=0.0081433;RA=930;AA=9;SR=548|382;SA=6|3;SB=0.66667;AB=0.75;ABR=3;ABA=1;RUN=3;SNP;TS;CpG
+20	107160	.	C	G	99.0	PASS	NS=312;DP=969;AC=4;AN=624;AF=0.0064103;RA=951;AA=12;SR=546|405;SA=5|7;SB=0.41667;AB=0.4;ABR=6;ABA=9;RUN=2;SNP;TV
+20	107201	.	G	A	99.0	PASS	NS=317;DP=936;AC=24;AN=634;AF=0.037855;RA=883;AA=51;SR=486|397;SA=36|15;SB=0.70588;AB=0.40278;ABR=29;ABA=43;RUN=1;SNP;TS;CpG
+20	107273	.	C	A	0.855	PASS	NS=298;DP=985;AC=1;AN=596;AF=0.0016779;RA=978;AA=3;SR=689|289;SA=1|2;SB=0.33333;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TV
+20	107457	.	T	C	99.0	PASS	NS=350;DP=1623;AC=91;AN=700;AF=0.13;RA=1430;AA=185;SR=730|700;SA=101|84;SB=0.54595;AB=0.52964;ABR=134;ABA=117;RUN=1;SNP;TS
+20	107563	.	T	G	1.01	PASS	NS=353;DP=1642;AC=1;AN=706;AF=0.0014164;RA=1604;AA=29;SR=596|1008;SA=25|4;SB=0.86207;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TV
+20	107613	.	T	G	99.0	PASS	NS=350;DP=1383;AC=68;AN=700;AF=0.097143;RA=1287;AA=95;SR=532|755;SA=36|59;SB=0.37895;AB=0.58621;ABR=68;ABA=48;RUN=1;SNP;TV
+20	107682	.	T	C	1.66	PASS	NS=328;DP=1188;AC=1;AN=656;AF=0.0015244;RA=1174;AA=7;SR=513|661;SA=6|1;SB=0.85714;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TS
+20	107739	.	C	T	19.1	PASS	NS=309;DP=939;AC=1;AN=618;AF=0.0016181;RA=931;AA=4;SR=333|598;SA=2|2;SB=0.5;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TS;CpG
+20	107955	.	C	T	0.385	PASS	NS=353;DP=1950;AC=2;AN=706;AF=0.0028329;RA=1935;AA=7;SR=1127|808;SA=4|3;SB=0.57143;AB=0.76923;ABR=10;ABA=3;RUN=2;SNP;TS
+20	107972	.	T	C	8.26	PASS	NS=356;DP=1989;AC=1;AN=712;AF=0.0014045;RA=1981;AA=3;SR=1113|868;SA=2|1;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS;CpG
+20	107980	.	T	C	3.5	PASS	NS=353;DP=2021;AC=1;AN=706;AF=0.0014164;RA=2005;AA=6;SR=1111|894;SA=3|3;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	107995	.	A	G	0.878	PASS	NS=353;DP=2018;AC=1;AN=706;AF=0.0014164;RA=2007;AA=2;SR=1100|907;SA=1|1;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	108012	.	A	C	0.159	PASS	NS=352;DP=1969;AC=1;AN=704;AF=0.0014205;RA=1957;AA=8;SR=1101|856;SA=6|2;SB=0.75;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TV
+20	108015	.	T	C	6.58	PASS	NS=353;DP=1948;AC=1;AN=706;AF=0.0014164;RA=1941;AA=3;SR=1097|844;SA=2|1;SB=0.66667;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	108017	.	C	T	0.235	PASS	NS=355;DP=1935;AC=1;AN=710;AF=0.0014085;RA=1924;AA=4;SR=1088|836;SA=3|1;SB=0.75;AB=0.66667;ABR=4;ABA=2;RUN=5;SNP;TS
+20	108135	.	G	A	0.105	PASS	NS=359;DP=1667;AC=1;AN=718;AF=0.0013928;RA=1654;AA=4;SR=1019|635;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	108187	.	A	G	99.0	PASS	NS=357;DP=1712;AC=83;AN=714;AF=0.11625;RA=1508;AA=195;SR=874|634;SA=103|92;SB=0.52821;AB=0.54895;ABR=157;ABA=128;RUN=1;SNP;TS
+20	108192	.	G	A	99.0	PASS	NS=359;DP=1741;AC=3;AN=718;AF=0.0041783;RA=1721;AA=14;SR=975|746;SA=7|7;SB=0.5;AB=0.33333;ABR=6;ABA=12;RUN=4;SNP;TS
+20	108286	.	T	G	99.0	PASS	NS=360;DP=1849;AC=159;AN=720;AF=0.22083;RA=1402;AA=404;SR=743|659;SA=205|199;SB=0.50743;AB=0.46593;ABR=253;ABA=274;RUN=1;SNP;TV
+20	108328	.	A	C	99.0	PASS	NS=362;DP=2007;AC=628;AN=724;AF=0.8674;RA=315;AA=1690;SR=139|176;SA=829|861;SB=0.49053;AB=0.52174;ABR=204;ABA=187;RUN=1;SNP;TV;HM3
+20	108333	.	G	A	3.94	PASS	NS=360;DP=2056;AC=1;AN=720;AF=0.0013889;RA=2044;AA=5;SR=980|1064;SA=3|2;SB=0.6;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	108642	.	T	C	0.532	PASS	NS=216;DP=749;AC=1;AN=432;AF=0.0023148;RA=741;AA=3;SR=201|540;SA=0|3;SB=0;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS;CpG
+20	108711	.	A	C	99.0	PASS	NS=227;DP=741;AC=10;AN=454;AF=0.022026;RA=723;AA=15;SR=265|458;SA=7|8;SB=0.46667;AB=0.51724;ABR=15;ABA=14;RUN=1;SNP;TV
+20	108793	.	C	G	68.9	PASS	NS=193;DP=364;AC=8;AN=386;AF=0.020725;RA=352;AA=10;SR=228|124;SA=6|4;SB=0.6;AB=0.57895;ABR=11;ABA=8;RUN=1;SNP;TV
+20	108889	.	G	C	99.0	PASS	NS=353;DP=1305;AC=22;AN=706;AF=0.031161;RA=1259;AA=38;SR=644|615;SA=22|16;SB=0.57895;AB=0.5;ABR=21;ABA=21;RUN=2;SNP;TV
+20	108949	.	T	G	99.0	PASS	NS=329;DP=1082;AC=61;AN=658;AF=0.092705;RA=988;AA=92;SR=653|335;SA=70|22;SB=0.76087;AB=0.53;ABR=53;ABA=47;RUN=1;SNP;TV
+20	108958	.	A	C	99.0	PASS	NS=324;DP=1013;AC=125;AN=648;AF=0.1929;RA=809;AA=201;SR=551|258;SA=141|60;SB=0.70149;AB=0.5503;ABR=93;ABA=75;RUN=2;SNP;TV
+20	109043	.	G	T	13.5	PASS	NS=342;DP=1318;AC=1;AN=684;AF=0.001462;RA=1299;AA=4;SR=862|437;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	109213	.	A	C	37.3	PASS	NS=366;DP=1810;AC=1;AN=732;AF=0.0013661;RA=1803;AA=4;SR=998|805;SA=3|1;SB=0.75;AB=0.2;ABR=1;ABA=4;RUN=1;SNP;TV
+20	109258	.	T	C	3.83	PASS	NS=370;DP=2046;AC=1;AN=740;AF=0.0013514;RA=2039;AA=3;SR=1134|905;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS
+20	109272	.	C	G	99.0	PASS	NS=367;DP=2020;AC=90;AN=734;AF=0.12262;RA=1774;AA=241;SR=983|791;SA=127|114;SB=0.52697;AB=0.50142;ABR=177;ABA=175;RUN=2;SNP;TV;HM3
+20	109273	.	T	A	7.99	PASS	NS=367;DP=2018;AC=1;AN=734;AF=0.0013624;RA=2012;AA=2;SR=1110|902;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	109288	.	G	C	99.0	PASS	NS=364;DP=1921;AC=90;AN=728;AF=0.12363;RA=1686;AA=221;SR=898|788;SA=120|101;SB=0.54299;AB=0.51133;ABR=158;ABA=148;RUN=1;SNP;TV
+20	109358	.	T	C	0.707	PASS	NS=358;DP=2101;AC=1;AN=716;AF=0.0013966;RA=2093;AA=5;SR=1099|994;SA=4|1;SB=0.8;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	109377	.	A	C	99.0	PASS	NS=361;DP=2239;AC=21;AN=722;AF=0.029086;RA=2161;AA=75;SR=1073|1088;SA=46|29;SB=0.61333;AB=0.49635;ABR=68;ABA=68;RUN=2;SNP;TV
+20	109385	.	A	G	1.51	PASS	NS=363;DP=2269;AC=1;AN=726;AF=0.0013774;RA=2254;AA=8;SR=1091|1163;SA=5|3;SB=0.625;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS;CpG
+20	109422	.	T	A	99.0	PASS	NS=366;DP=2242;AC=24;AN=732;AF=0.032787;RA=2159;AA=76;SR=1039|1120;SA=30|46;SB=0.39474;AB=0.48387;ABR=60;ABA=64;RUN=1;SNP;TV
+20	109440	.	T	C	0.386	PASS	NS=362;DP=2222;AC=1;AN=724;AF=0.0013812;RA=2218;AA=3;SR=1057|1161;SA=1|2;SB=0.33333;AB=0.77778;ABR=7;ABA=2;RUN=3;SNP;TS
+20	109575	.	A	G	0.588	PASS	NS=364;DP=2020;AC=1;AN=728;AF=0.0013736;RA=2008;AA=4;SR=931|1077;SA=3|1;SB=0.75;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	109582	.	T	G	23.2	PASS	NS=362;DP=1967;AC=3;AN=724;AF=0.0041436;RA=1957;AA=6;SR=907|1050;SA=3|3;SB=0.5;AB=0.58333;ABR=7;ABA=5;RUN=1;SNP;TV
+20	109707	.	G	A	0.971	PASS	NS=323;DP=1467;AC=1;AN=646;AF=0.001548;RA=1455;AA=3;SR=669|786;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	109725	.	T	C	0.908	PASS	NS=336;DP=1492;AC=1;AN=672;AF=0.0014881;RA=1479;AA=7;SR=670|809;SA=6|1;SB=0.85714;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	109736	.	T	C	0.074	PASS	NS=342;DP=1489;AC=1;AN=684;AF=0.001462;RA=1478;AA=5;SR=680|798;SA=4|1;SB=0.8;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	109783	.	T	C	99.0	PASS	NS=342;DP=1544;AC=26;AN=684;AF=0.038012;RA=1472;AA=66;SR=641|831;SA=28|38;SB=0.42424;AB=0.46364;ABR=51;ABA=57;RUN=2;SNP;TS
+20	109889	.	T	C	0.545	PASS	NS=365;DP=2083;AC=1;AN=730;AF=0.0013699;RA=2077;AA=4;SR=1096|981;SA=2|2;SB=0.5;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	109901	.	A	G	99.0	PASS	NS=364;DP=2112;AC=28;AN=728;AF=0.038462;RA=2028;AA=78;SR=1064|964;SA=39|39;SB=0.5;AB=0.46479;ABR=66;ABA=74;RUN=1;SNP;TS
+20	109933	.	G	A	0.166	PASS	NS=357;DP=1915;AC=1;AN=714;AF=0.0014006;RA=1908;AA=3;SR=1017|891;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=3;SNP;TS
+20	109947	.	T	A	4.68	PASS	NS=352;DP=1833;AC=2;AN=704;AF=0.0028409;RA=1822;AA=4;SR=950|872;SA=1|3;SB=0.25;AB=0.5;ABR=3;ABA=3;RUN=2;SNP;TV
+20	109997	.	C	T	0.0475	PASS	NS=346;DP=1655;AC=1;AN=692;AF=0.0014451;RA=1639;AA=11;SR=790|849;SA=10|1;SB=0.90909;AB=0.5;ABR=3;ABA=3;RUN=8;SNP;TS
+20	110058	.	G	C	99.0	PASS	NS=338;DP=1651;AC=146;AN=676;AF=0.21598;RA=1306;AA=340;SR=717|589;SA=189|151;SB=0.55588;AB=0.4978;ABR=226;ABA=226;RUN=1;SNP;TV
+20	110082	.	A	G	99.0	PASS	NS=337;DP=1696;AC=5;AN=674;AF=0.0074184;RA=1677;AA=14;SR=1008|669;SA=5|9;SB=0.35714;AB=0.47826;ABR=11;ABA=12;RUN=1;SNP;TS
+20	110098	.	A	G	99.0	PASS	NS=347;DP=1831;AC=242;AN=694;AF=0.3487;RA=1250;AA=577;SR=767|483;SA=353|224;SB=0.61179;AB=0.51826;ABR=298;ABA=277;RUN=3;SNP;TS
+20	110124	.	T	C	0.105	PASS	NS=365;DP=2096;AC=1;AN=730;AF=0.0013699;RA=2091;AA=3;SR=1273|818;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS;CpG
+20	110234	.	G	A	0.759	PASS	NS=350;DP=1744;AC=1;AN=700;AF=0.0014286;RA=1727;AA=4;SR=739|988;SA=3|1;SB=0.75;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	110315	.	T	C	0.0966	PASS	NS=337;DP=1589;AC=1;AN=674;AF=0.0014837;RA=1583;AA=3;SR=729|854;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	110366	.	C	A	99.0	PASS	NS=340;DP=1634;AC=7;AN=680;AF=0.010294;RA=1602;AA=28;SR=724|878;SA=18|10;SB=0.64286;AB=0.39474;ABR=15;ABA=23;RUN=3;SNP;TV
+20	110404	.	G	A	26.7	PASS	NS=351;DP=1839;AC=1;AN=702;AF=0.0014245;RA=1826;AA=5;SR=727|1099;SA=4|1;SB=0.8;AB=0.625;ABR=5;ABA=3;RUN=1;SNP;TS
+20	110417	.	G	A	7.25	PASS	NS=363;DP=1934;AC=1;AN=726;AF=0.0013774;RA=1923;AA=4;SR=782|1141;SA=0|4;SB=0;AB=0;ABR=0;ABA=2;RUN=1;SNP;TS
+20	110427	.	A	G	0.108	PASS	NS=364;DP=2009;AC=1;AN=728;AF=0.0013736;RA=2000;AA=3;SR=826|1174;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	110442	.	C	A	9.88	PASS	NS=367;DP=2074;AC=1;AN=734;AF=0.0013624;RA=2060;AA=5;SR=845|1215;SA=3|2;SB=0.6;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	110520	.	A	G	8.32	PASS	NS=351;DP=1771;AC=1;AN=702;AF=0.0014245;RA=1759;AA=3;SR=809|950;SA=2|1;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	110536	.	T	C	55.6	PASS	NS=359;DP=1709;AC=1;AN=718;AF=0.0013928;RA=1697;AA=6;SR=784|913;SA=4|2;SB=0.66667;AB=0.42857;ABR=3;ABA=4;RUN=1;SNP;TS;CpG
+20	110564	.	T	C	1.51	PASS	NS=360;DP=1650;AC=1;AN=720;AF=0.0013889;RA=1637;AA=5;SR=750|887;SA=3|2;SB=0.6;AB=0.33333;ABR=1;ABA=2;RUN=2;SNP;TS
+20	110702	.	C	T	99.0	PASS	NS=244;DP=491;AC=104;AN=488;AF=0.21311;RA=368;AA=102;SR=39|329;SA=6|96;SB=0.058824;AB=0.50617;ABR=41;ABA=38;RUN=1;SNP;TS;CpG
+20	110773	.	G	A	0.095	PASS	NS=223;DP=443;AC=18;AN=446;AF=0.040359;RA=425;AA=14;SR=61|364;SA=3|11;SB=0.21429;AB=0.57895;ABR=11;ABA=7;RUN=2;SNP;TS;CpG
+20	110875	.	C	T	99.0	PASS	NS=165;DP=461;AC=14;AN=330;AF=0.042424;RA=439;AA=21;SR=7|432;SA=0|21;SB=0;AB=0.52941;ABR=18;ABA=16;RUN=2;SNP;TS;CpG
+20	110970	.	G	A	99.0	PASS	NS=88;DP=160;AC=37;AN=176;AF=0.21023;RA=125;AA=32;SR=6|119;SA=0|32;SB=0;AB=0.54545;ABR=12;ABA=9;RUN=1;SNP;TS;CpG
+20	110976	.	G	A	67.8	PASS	NS=80;DP=137;AC=6;AN=160;AF=0.0375;RA=127;AA=8;SR=4|123;SA=0|8;SB=0;AB=0.4;ABR=2;ABA=3;RUN=1;SNP;TS;CpG
+20	110979	.	A	G	99.0	PASS	NS=41;DP=61;AC=39;AN=82;AF=0.47561;RA=29;AA=30;SR=4|25;SA=0|30;SB=0;AB=0.375;ABR=3;ABA=4;RUN=1;SNP;TS
+20	111531	.	G	A	0.0614	PASS	NS=6;DP=8;AC=4;AN=12;AF=0.33333;RA=3;AA=4;SR=0|3;SA=0|4;SB=0;AB=0;ABR=0;ABA=0;RUN=7;SNP;TS
+20	116405	.	G	A	49.6	PASS	NS=55;DP=69;AC=26;AN=110;AF=0.23636;RA=52;AA=16;SR=49|3;SA=16|0;SB=1;AB=0;ABR=0;ABA=0;RUN=2;SNP;TS
+20	116545	.	G	A	95.2	PASS	NS=65;DP=84;AC=19;AN=130;AF=0.14615;RA=70;AA=13;SR=67|3;SA=13|0;SB=1;AB=0.5;ABR=3;ABA=3;RUN=1;SNP;TS;CpG
+20	116652	.	A	T	0.615	PASS	NS=305;DP=848;AC=1;AN=610;AF=0.0016393;RA=842;AA=3;SR=602|240;SA=3|0;SB=1;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TV
+20	116787	.	A	G	99.0	PASS	NS=293;DP=885;AC=195;AN=586;AF=0.33276;RA=619;AA=263;SR=450|169;SA=196|67;SB=0.74525;AB=0.52709;ABR=107;ABA=95;RUN=2;SNP;TS;CpG
+20	116986	.	G	T	0.068	PASS	NS=200;DP=396;AC=1;AN=400;AF=0.0025;RA=385;AA=4;SR=239|146;SA=0|4;SB=0;AB=0.5;ABR=1;ABA=1;RUN=1;SNP;TV
+20	117254	.	T	C	99.0	PASS	NS=360;DP=1886;AC=3;AN=720;AF=0.0041667;RA=1869;AA=10;SR=1183|686;SA=6|4;SB=0.6;AB=0.6087;ABR=14;ABA=9;RUN=1;SNP;TS
+20	117290	.	T	G	99.0	PASS	NS=358;DP=1981;AC=49;AN=716;AF=0.068436;RA=1888;AA=79;SR=1178|710;SA=41|38;SB=0.51899;AB=0.7807;ABR=267;ABA=74;RUN=2;SNP;TV
+20	117305	.	T	C	3.02	PASS	NS=359;DP=2077;AC=1;AN=718;AF=0.0013928;RA=2064;AA=3;SR=1224|840;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	117312	.	G	A	0.499	PASS	NS=364;DP=2121;AC=3;AN=728;AF=0.0041209;RA=2108;AA=8;SR=1235|873;SA=5|3;SB=0.625;AB=0.7619;ABR=16;ABA=5;RUN=2;SNP;TS
+20	117329	.	T	C	6.59	PASS	NS=361;DP=2185;AC=1;AN=722;AF=0.001385;RA=2178;AA=2;SR=1178|1000;SA=1|1;SB=0.5;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	117475	.	T	C	1.49	PASS	NS=367;DP=2292;AC=1;AN=734;AF=0.0013624;RA=2284;AA=4;SR=1049|1235;SA=2|2;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS;CpG
+20	117575	.	A	G	0.598	PASS	NS=358;DP=2097;AC=1;AN=716;AF=0.0013966;RA=2089;AA=3;SR=957|1132;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TS;CpG
+20	117618	.	T	G	0.0451	PASS	NS=366;DP=2178;AC=1;AN=732;AF=0.0013661;RA=2162;AA=10;SR=1020|1142;SA=8|2;SB=0.8;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TV
+20	117683	.	G	C	0.218	PASS	NS=359;DP=2011;AC=2;AN=718;AF=0.0027855;RA=1997;AA=5;SR=926|1071;SA=3|2;SB=0.6;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TV
+20	117685	.	T	A	0.339	PASS	NS=360;DP=2018;AC=1;AN=720;AF=0.0013889;RA=2009;AA=2;SR=939|1070;SA=1|1;SB=0.5;AB=0.83333;ABR=10;ABA=2;RUN=2;SNP;TV
+20	117719	.	T	C	99.0	PASS	NS=363;DP=2041;AC=1;AN=726;AF=0.0013774;RA=2030;AA=8;SR=948|1082;SA=7|1;SB=0.875;AB=0.36364;ABR=4;ABA=7;RUN=2;SNP;TS
+20	117742	.	T	A	0.194	PASS	NS=361;DP=1998;AC=1;AN=722;AF=0.001385;RA=1990;AA=4;SR=956|1034;SA=1|3;SB=0.25;AB=0.5;ABR=2;ABA=2;RUN=3;SNP;TV
+20	117749	.	C	G	8.36	PASS	NS=360;DP=1983;AC=1;AN=720;AF=0.0013889;RA=1974;AA=4;SR=956|1018;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	117769	.	A	G	3.93	PASS	NS=358;DP=1977;AC=1;AN=716;AF=0.0013966;RA=1968;AA=4;SR=942|1026;SA=1|3;SB=0.25;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	117770	.	C	T	1.74	PASS	NS=359;DP=1977;AC=1;AN=718;AF=0.0013928;RA=1969;AA=2;SR=938|1031;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	117892	.	C	T	99.0	PASS	NS=363;DP=2099;AC=4;AN=726;AF=0.0055096;RA=2082;AA=14;SR=1169|913;SA=6|8;SB=0.42857;AB=0.56667;ABR=17;ABA=13;RUN=1;SNP;TS;CpG
+20	117925	.	G	C	3.85	PASS	NS=367;DP=2130;AC=1;AN=734;AF=0.0013624;RA=2121;AA=2;SR=1246|875;SA=1|1;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	117968	.	G	A	69.7	PASS	NS=362;DP=2113;AC=1;AN=724;AF=0.0013812;RA=2094;AA=9;SR=1143|951;SA=6|3;SB=0.66667;AB=0.33333;ABR=3;ABA=6;RUN=2;SNP;TS
+20	117971	.	T	C	0.191	PASS	NS=361;DP=2106;AC=1;AN=722;AF=0.001385;RA=2096;AA=4;SR=1139|957;SA=3|1;SB=0.75;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS;CpG
+20	118008	.	G	A	99.0	PASS	NS=369;DP=2249;AC=98;AN=738;AF=0.13279;RA=1978;AA=264;SR=1025|953;SA=161|103;SB=0.60985;AB=0.51459;ABR=194;ABA=183;RUN=1;SNP;TS
+20	118034	.	A	G	43.1	PASS	NS=368;DP=2280;AC=1;AN=736;AF=0.0013587;RA=2262;AA=8;SR=1177|1085;SA=2|6;SB=0.25;AB=0.63636;ABR=7;ABA=4;RUN=1;SNP;TS
+20	118087	.	A	G	99.0	PASS	NS=366;DP=2284;AC=95;AN=732;AF=0.12978;RA=1966;AA=308;SR=1170|796;SA=194|114;SB=0.62987;AB=0.51454;ABR=230;ABA=214;RUN=1;SNP;TS;CpG
+20	118150	.	A	G	99.0	PASS	NS=366;DP=2270;AC=96;AN=732;AF=0.13115;RA=1946;AA=312;SR=1208|738;SA=191|121;SB=0.61218;AB=0.50302;ABR=250;ABA=246;RUN=1;SNP;TS;CpG
+20	118166	.	C	T	75.1	PASS	NS=369;DP=2290;AC=1;AN=738;AF=0.001355;RA=2268;AA=8;SR=1313|955;SA=2|6;SB=0.25;AB=0.14286;ABR=1;ABA=6;RUN=1;SNP;TS
+20	118169	.	T	C	0.287	PASS	NS=369;DP=2281;AC=1;AN=738;AF=0.001355;RA=2254;AA=14;SR=1275|979;SA=9|5;SB=0.64286;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	118222	.	A	G	99.0	PASS	NS=367;DP=2462;AC=20;AN=734;AF=0.027248;RA=2368;AA=84;SR=1080|1288;SA=41|43;SB=0.4881;AB=0.47134;ABR=74;ABA=82;RUN=1;SNP;TS;CpG
+20	118249	.	C	A	2.99	PASS	NS=369;DP=2568;AC=1;AN=738;AF=0.001355;RA=2555;AA=6;SR=1170|1385;SA=3|3;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	118252	.	T	C	41.3	PASS	NS=369;DP=2588;AC=1;AN=738;AF=0.001355;RA=2562;AA=10;SR=1173|1389;SA=6|4;SB=0.6;AB=0.57143;ABR=4;ABA=3;RUN=1;SNP;TS
+20	118410	.	T	C	99.0	PASS	NS=366;DP=2417;AC=3;AN=732;AF=0.0040984;RA=2365;AA=26;SR=1156|1209;SA=17|9;SB=0.65385;AB=0.52174;ABR=12;ABA=11;RUN=1;SNP;TS
+20	118477	.	G	C	40.1	PASS	NS=368;DP=2524;AC=1;AN=736;AF=0.0013587;RA=2501;AA=9;SR=1136|1365;SA=4|5;SB=0.44444;AB=0.55556;ABR=5;ABA=4;RUN=1;SNP;TV
+20	118525	.	T	A	0.143	PASS	NS=369;DP=2559;AC=1;AN=738;AF=0.001355;RA=2528;AA=5;SR=1373|1155;SA=3|2;SB=0.6;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	118535	.	G	A	99.0	PASS	NS=370;DP=2547;AC=25;AN=740;AF=0.033784;RA=2432;AA=98;SR=1401|1031;SA=47|51;SB=0.47959;AB=0.51872;ABR=97;ABA=89;RUN=1;SNP;TS;CpG
+20	118618	.	C	T	1.78	PASS	NS=367;DP=2563;AC=1;AN=734;AF=0.0013624;RA=2546;AA=3;SR=1375|1171;SA=1|2;SB=0.33333;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	118657	.	C	T	0.168	PASS	NS=368;DP=2612;AC=1;AN=736;AF=0.0013587;RA=2602;AA=3;SR=1428|1174;SA=2|1;SB=0.66667;AB=0.85714;ABR=12;ABA=2;RUN=1;SNP;TS
+20	118780	.	T	C	0.605	PASS	NS=368;DP=2715;AC=1;AN=736;AF=0.0013587;RA=2696;AA=6;SR=1421|1275;SA=1|5;SB=0.16667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	118803	.	C	T	2.66	PASS	NS=370;DP=2742;AC=1;AN=740;AF=0.0013514;RA=2728;AA=4;SR=1422|1306;SA=2|2;SB=0.5;AB=0.83333;ABR=10;ABA=2;RUN=1;SNP;TS
+20	118878	.	C	A	4.89	PASS	NS=371;DP=2432;AC=1;AN=742;AF=0.0013477;RA=2419;AA=6;SR=1178|1241;SA=4|2;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	118954	.	G	A	0.29	PASS	NS=357;DP=2361;AC=3;AN=714;AF=0.0042017;RA=2337;AA=8;SR=1048|1289;SA=4|4;SB=0.5;AB=0.33333;ABR=2;ABA=4;RUN=2;SNP;TS
+20	118963	.	C	T	0.62	PASS	NS=359;DP=2420;AC=1;AN=718;AF=0.0013928;RA=2411;AA=4;SR=1067|1344;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	118973	.	G	C	1.48	PASS	NS=365;DP=2459;AC=2;AN=730;AF=0.0027397;RA=2422;AA=13;SR=1098|1324;SA=7|6;SB=0.53846;AB=0.55556;ABR=5;ABA=4;RUN=1;SNP;TV
+20	119005	.	A	C	0.0651	PASS	NS=368;DP=2535;AC=1;AN=736;AF=0.0013587;RA=2503;AA=21;SR=1147|1356;SA=19|2;SB=0.90476;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	119035	.	G	C	1.82	PASS	NS=366;DP=2461;AC=1;AN=732;AF=0.0013661;RA=2443;AA=8;SR=1160|1283;SA=7|1;SB=0.875;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TV
+20	119056	.	A	C	99.0	PASS	NS=368;DP=2408;AC=22;AN=736;AF=0.029891;RA=2343;AA=61;SR=1089|1254;SA=30|31;SB=0.4918;AB=0.57895;ABR=77;ABA=55;RUN=4;SNP;TV
+20	119085	.	G	T	11.6	PASS	NS=369;DP=2362;AC=1;AN=738;AF=0.001355;RA=2353;AA=3;SR=1098|1255;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	119295	.	C	T	5.3	PASS	NS=370;DP=2159;AC=1;AN=740;AF=0.0013514;RA=2150;AA=7;SR=909|1241;SA=3|4;SB=0.42857;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	119420	.	A	G	2.58	PASS	NS=365;DP=2001;AC=1;AN=730;AF=0.0013699;RA=1996;AA=3;SR=955|1041;SA=2|1;SB=0.66667;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS;CpG
+20	119421	.	A	G	72.7	PASS	NS=366;DP=2005;AC=3;AN=732;AF=0.0040984;RA=1990;AA=10;SR=951|1039;SA=5|5;SB=0.5;AB=0.52941;ABR=9;ABA=8;RUN=1;SNP;TS
+20	119496	.	C	A	0.46	PASS	NS=355;DP=1848;AC=1;AN=710;AF=0.0014085;RA=1840;AA=5;SR=837|1003;SA=2|3;SB=0.4;AB=0.77778;ABR=7;ABA=2;RUN=5;SNP;TV
+20	119518	.	C	T	0.149	PASS	NS=356;DP=1941;AC=1;AN=712;AF=0.0014045;RA=1932;AA=2;SR=900|1032;SA=1|1;SB=0.5;AB=0.85714;ABR=12;ABA=2;RUN=3;SNP;TS
+20	119534	.	A	G	99.0	PASS	NS=360;DP=2109;AC=39;AN=720;AF=0.054167;RA=1989;AA=114;SR=879|1110;SA=47|67;SB=0.41228;AB=0.47396;ABR=91;ABA=101;RUN=3;SNP;TS
+20	119596	.	A	G	99.0	PASS	NS=366;DP=2103;AC=39;AN=732;AF=0.053279;RA=2004;AA=97;SR=874|1130;SA=41|56;SB=0.42268;AB=0.54706;ABR=93;ABA=76;RUN=1;SNP;TS
+20	119599	.	A	T	4.27	PASS	NS=365;DP=2081;AC=1;AN=730;AF=0.0013699;RA=2067;AA=5;SR=906|1161;SA=4|1;SB=0.8;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	119714	.	G	A	0.547	PASS	NS=314;DP=1079;AC=1;AN=628;AF=0.0015924;RA=1068;AA=6;SR=496|572;SA=2|4;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS;CpG
+20	119730	.	A	G	99.0	PASS	NS=308;DP=1035;AC=49;AN=616;AF=0.079545;RA=956;AA=69;SR=376|580;SA=24|45;SB=0.34783;AB=0.52427;ABR=54;ABA=48;RUN=1;SNP;TS;CpG
+20	119734	.	T	C	4.93	PASS	NS=310;DP=1053;AC=1;AN=620;AF=0.0016129;RA=1034;AA=10;SR=379|655;SA=2|8;SB=0.2;AB=0.5;ABR=3;ABA=3;RUN=3;SNP;TS
+20	119897	.	T	C	0.0526	PASS	NS=263;DP=770;AC=1;AN=526;AF=0.0019011;RA=760;AA=7;SR=349|411;SA=4|3;SB=0.57143;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TS;CpG
+20	119918	.	A	G	44.3	PASS	NS=294;DP=924;AC=3;AN=588;AF=0.005102;RA=911;AA=11;SR=340|571;SA=2|9;SB=0.18182;AB=0.52632;ABR=10;ABA=9;RUN=1;SNP;TS
+20	119945	.	T	C	0.0906	PASS	NS=335;DP=1320;AC=1;AN=670;AF=0.0014925;RA=1312;AA=3;SR=458|854;SA=1|2;SB=0.33333;AB=0.7;ABR=7;ABA=3;RUN=2;SNP;TS;CpG
+20	119983	.	T	C	18.0	PASS	NS=351;DP=1675;AC=1;AN=702;AF=0.0014245;RA=1664;AA=4;SR=800|864;SA=2|2;SB=0.5;AB=0.33333;ABR=1;ABA=2;RUN=1;SNP;TS
+20	119986	.	T	A	99.0	PASS	NS=348;DP=1647;AC=34;AN=696;AF=0.048851;RA=1580;AA=64;SR=781|799;SA=29|35;SB=0.45312;AB=0.55046;ABR=60;ABA=49;RUN=3;SNP;TV
+20	119992	.	A	T	0.112	PASS	NS=348;DP=1643;AC=1;AN=696;AF=0.0014368;RA=1632;AA=3;SR=839|793;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	120093	.	T	C	99.0	PASS	NS=336;DP=1402;AC=35;AN=672;AF=0.052083;RA=1335;AA=61;SR=744|591;SA=39|22;SB=0.63934;AB=0.53153;ABR=59;ABA=52;RUN=1;SNP;TS
+20	120127	.	T	C	99.0	PASS	NS=345;DP=1541;AC=39;AN=690;AF=0.056522;RA=1447;AA=87;SR=872|575;SA=51|36;SB=0.58621;AB=0.47436;ABR=74;ABA=82;RUN=1;SNP;TS
+20	120210	.	G	C	99.0	PASS	NS=366;DP=2009;AC=16;AN=732;AF=0.021858;RA=1951;AA=51;SR=1192|759;SA=31|20;SB=0.60784;AB=0.44595;ABR=33;ABA=40;RUN=1;SNP;TV
+20	120234	.	C	A	99.0	PASS	NS=363;DP=1980;AC=21;AN=726;AF=0.028926;RA=1914;AA=62;SR=1162|752;SA=31|31;SB=0.5;AB=0.53982;ABR=61;ABA=52;RUN=6;SNP;TV
+20	120289	.	T	C	1.51	PASS	NS=359;DP=2131;AC=1;AN=718;AF=0.0013928;RA=2120;AA=4;SR=1226|894;SA=2|2;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TS
+20	120327	.	A	G	99.0	PASS	NS=365;DP=2183;AC=3;AN=730;AF=0.0041096;RA=2172;AA=9;SR=1158|1014;SA=4|5;SB=0.44444;AB=0.52941;ABR=9;ABA=8;RUN=1;SNP;TS;CpG
+20	120353	.	T	C	99.0	PASS	NS=361;DP=2069;AC=15;AN=722;AF=0.020776;RA=2029;AA=35;SR=1056|973;SA=16|19;SB=0.45714;AB=0.34043;ABR=16;ABA=31;RUN=1;SNP;TS;CpG
+20	120463	.	T	C	0.168	PASS	NS=357;DP=2200;AC=1;AN=714;AF=0.0014006;RA=2187;AA=4;SR=1102|1085;SA=2|2;SB=0.5;AB=0.77778;ABR=7;ABA=2;RUN=2;SNP;TS
+20	120464	.	T	C	0.96	PASS	NS=357;DP=2188;AC=1;AN=714;AF=0.0014006;RA=2158;AA=17;SR=1089|1069;SA=3|14;SB=0.17647;AB=0.5;ABR=2;ABA=2;RUN=2;SNP;TS
+20	120471	.	A	G	99.0	PASS	NS=355;DP=2155;AC=292;AN=710;AF=0.41127;RA=1332;AA=818;SR=667|665;SA=419|399;SB=0.51222;AB=0.50122;ABR=411;ABA=408;RUN=2;SNP;TS;CpG
+20	120487	.	A	G	0.161	PASS	NS=361;DP=2223;AC=1;AN=722;AF=0.001385;RA=2217;AA=2;SR=1044|1173;SA=1|1;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS;CpG
+20	120491	.	G	A	2.04	PASS	NS=361;DP=2213;AC=1;AN=722;AF=0.001385;RA=2201;AA=3;SR=1022|1179;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=4;SNP;TS
+20	120534	.	T	A	2.45	PASS	NS=366;DP=2334;AC=1;AN=732;AF=0.0013661;RA=2317;AA=6;SR=1093|1224;SA=2|4;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	120535	.	G	A	3.2	PASS	NS=366;DP=2332;AC=1;AN=732;AF=0.0013661;RA=2321;AA=5;SR=1104|1217;SA=2|3;SB=0.4;AB=0.57143;ABR=4;ABA=3;RUN=1;SNP;TS
+20	120553	.	G	A	99.0	PASS	NS=363;DP=2295;AC=38;AN=726;AF=0.052342;RA=2196;AA=93;SR=1087|1109;SA=46|47;SB=0.49462;AB=0.5509;ABR=92;ABA=75;RUN=1;SNP;TS
+20	120746	.	A	G	0.107	PASS	NS=356;DP=2078;AC=1;AN=712;AF=0.0014045;RA=2073;AA=3;SR=1040|1033;SA=1|2;SB=0.33333;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TS
+20	120761	.	A	G	4.72	PASS	NS=360;DP=2025;AC=2;AN=720;AF=0.0027778;RA=2013;AA=7;SR=1011|1002;SA=2|5;SB=0.28571;AB=0.72727;ABR=8;ABA=3;RUN=1;SNP;TS
+20	120863	.	T	C	7.31	PASS	NS=356;DP=2117;AC=1;AN=712;AF=0.0014045;RA=2108;AA=2;SR=1114|994;SA=1|1;SB=0.5;AB=0;ABR=0;ABA=2;RUN=1;SNP;TS
+20	120911	.	T	C	4.66	PASS	NS=364;DP=2171;AC=1;AN=728;AF=0.0013736;RA=2152;AA=3;SR=1110|1042;SA=1|2;SB=0.33333;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS
+20	121040	.	C	T	0.0497	PASS	NS=351;DP=2064;AC=1;AN=702;AF=0.0014245;RA=2047;AA=3;SR=1039|1008;SA=3|0;SB=1;AB=0.8;ABR=4;ABA=1;RUN=1;SNP;TS
+20	121125	.	A	G	2.32	PASS	NS=362;DP=2128;AC=1;AN=724;AF=0.0013812;RA=2124;AA=3;SR=1089|1035;SA=3|0;SB=1;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS;CpG
+20	121188	.	G	A	99.0	PASS	NS=363;DP=1947;AC=35;AN=726;AF=0.048209;RA=1842;AA=103;SR=897|945;SA=51|52;SB=0.49515;AB=0.4069;ABR=59;ABA=86;RUN=2;SNP;TS
+20	121235	.	C	T	0.234	PASS	NS=360;DP=1946;AC=1;AN=720;AF=0.0013889;RA=1935;AA=3;SR=820|1115;SA=2|1;SB=0.66667;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	121288	.	G	A	43.3	PASS	NS=364;DP=2030;AC=1;AN=728;AF=0.0013736;RA=2021;AA=5;SR=756|1265;SA=1|4;SB=0.2;AB=0.625;ABR=5;ABA=3;RUN=1;SNP;TS;CpG
+20	121310	.	A	C	99.0	PASS	NS=358;DP=1910;AC=195;AN=716;AF=0.27235;RA=1431;AA=477;SR=602|829;SA=212|265;SB=0.44444;AB=0.52581;ABR=326;ABA=294;RUN=1;SNP;TV
+20	121478	.	C	A	99.0	PASS	NS=332;DP=1073;AC=248;AN=664;AF=0.37349;RA=685;AA=338;SR=373|312;SA=200|138;SB=0.59172;AB=0.49371;ABR=157;ABA=143;RUN=1;SNP;TV
+20	121493	.	C	T	99.0	PASS	NS=304;DP=848;AC=120;AN=608;AF=0.19737;RA=641;AA=202;SR=285|356;SA=94|108;SB=0.46535;AB=0.59302;ABR=204;ABA=137;RUN=18;SNP;TS
+20	121543	.	C	T	73.2	PASS	NS=355;DP=1309;AC=2;AN=710;AF=0.0028169;RA=1270;AA=6;SR=571|699;SA=3|3;SB=0.5;AB=0.33333;ABR=3;ABA=5;RUN=1;SNP;TS
+20	121609	.	G	C	99.0	PASS	NS=362;DP=1963;AC=22;AN=724;AF=0.030387;RA=1886;AA=71;SR=987|899;SA=41|30;SB=0.57746;AB=0.496;ABR=62;ABA=63;RUN=1;SNP;TV
+20	121682	.	C	A	2.49	PASS	NS=361;DP=1952;AC=1;AN=722;AF=0.001385;RA=1941;AA=6;SR=1070|871;SA=3|3;SB=0.5;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TV
+20	121727	.	T	C	0.137	PASS	NS=365;DP=2073;AC=1;AN=730;AF=0.0013699;RA=2064;AA=4;SR=1229|835;SA=3|1;SB=0.75;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TS;CpG
+20	121761	.	G	A	0.814	PASS	NS=363;DP=1992;AC=1;AN=726;AF=0.0013774;RA=1983;AA=4;SR=1067|916;SA=1|3;SB=0.25;AB=0.81818;ABR=9;ABA=2;RUN=2;SNP;TS
+20	121787	.	A	G	5.77	PASS	NS=368;DP=1959;AC=1;AN=736;AF=0.0013587;RA=1946;AA=6;SR=952|994;SA=3|3;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS;CpG
+20	121824	.	C	T	99.0	PASS	NS=366;DP=1902;AC=299;AN=732;AF=0.40847;RA=1098;AA=764;SR=470|628;SA=353|411;SB=0.46204;AB=0.48175;ABR=330;ABA=346;RUN=1;SNP;TS
+20	121975	.	C	T	0.0658	PASS	NS=368;DP=2209;AC=1;AN=736;AF=0.0013587;RA=2200;AA=2;SR=1147|1053;SA=2|0;SB=1;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TS;CpG
+20	121976	.	G	A	99.0	PASS	NS=368;DP=2174;AC=320;AN=736;AF=0.43478;RA=1282;AA=888;SR=680|602;SA=467|421;SB=0.5259;AB=0.50249;ABR=404;ABA=399;RUN=1;SNP;TS;CpG;HM3
+20	121986	.	A	G	29.8	PASS	NS=366;DP=2153;AC=4;AN=732;AF=0.0054645;RA=2143;AA=7;SR=1159|984;SA=3|4;SB=0.42857;AB=0.69565;ABR=16;ABA=7;RUN=1;SNP;TS
+20	122072	.	T	C	0.195	PASS	NS=369;DP=2181;AC=4;AN=738;AF=0.0054201;RA=2151;AA=13;SR=1122|1029;SA=13|0;SB=1;AB=0.76;ABR=19;ABA=6;RUN=1;SNP;TS
+20	122202	.	C	T	2.54	PASS	NS=365;DP=2275;AC=1;AN=730;AF=0.0013699;RA=2262;AA=3;SR=1021|1241;SA=2|1;SB=0.66667;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	122214	.	A	T	0.559	PASS	NS=368;DP=2327;AC=1;AN=736;AF=0.0013587;RA=2321;AA=5;SR=1038|1283;SA=3|2;SB=0.6;AB=0.71429;ABR=5;ABA=2;RUN=1;SNP;TV
+20	122337	.	A	G	13.1	PASS	NS=370;DP=2216;AC=1;AN=740;AF=0.0013514;RA=2208;AA=4;SR=1130|1078;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	122411	.	C	T	1.75	PASS	NS=366;DP=2162;AC=1;AN=732;AF=0.0013661;RA=2155;AA=3;SR=1002|1153;SA=2|1;SB=0.66667;AB=0.5;ABR=2;ABA=2;RUN=1;SNP;TS
+20	122505	.	T	G	99.0	PASS	NS=358;DP=2049;AC=24;AN=716;AF=0.03352;RA=1985;AA=61;SR=948|1037;SA=23|38;SB=0.37705;AB=0.48936;ABR=46;ABA=48;RUN=1;SNP;TV
+20	122508	.	G	A	99.0	PASS	NS=358;DP=2024;AC=118;AN=716;AF=0.1648;RA=1718;AA=301;SR=831|887;SA=133|168;SB=0.44186;AB=0.51299;ABR=237;ABA=224;RUN=4;SNP;TS;HM3
+20	122511	.	T	C	99.0	PASS	NS=363;DP=2032;AC=20;AN=726;AF=0.027548;RA=1967;AA=59;SR=932|1035;SA=27|32;SB=0.45763;AB=0.39706;ABR=27;ABA=41;RUN=2;SNP;TS
+20	122548	.	C	T	99.0	PASS	NS=356;DP=1990;AC=37;AN=712;AF=0.051966;RA=1899;AA=86;SR=950|949;SA=49|37;SB=0.56977;AB=0.51471;ABR=70;ABA=66;RUN=6;SNP;TS
+20	122637	.	G	T	0.0819	PASS	NS=365;DP=2023;AC=1;AN=730;AF=0.0013699;RA=2003;AA=14;SR=955|1048;SA=6|8;SB=0.42857;AB=0.75;ABR=3;ABA=1;RUN=2;SNP;TV
+20	122706	.	G	A	13.0	PASS	NS=362;DP=2089;AC=3;AN=724;AF=0.0041436;RA=2063;AA=10;SR=944|1119;SA=6|4;SB=0.6;AB=0.4375;ABR=7;ABA=9;RUN=5;SNP;TS
+20	122770	.	T	C	0.0898	PASS	NS=359;DP=2007;AC=1;AN=718;AF=0.0013928;RA=2001;AA=3;SR=951|1050;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	122897	.	C	G	63.7	PASS	NS=367;DP=2167;AC=1;AN=734;AF=0.0013624;RA=2145;AA=11;SR=1277|868;SA=6|5;SB=0.54545;AB=0.45455;ABR=5;ABA=6;RUN=2;SNP;TV
+20	122913	.	G	C	33.5	PASS	NS=368;DP=2131;AC=1;AN=736;AF=0.0013587;RA=2115;AA=7;SR=1201|914;SA=5|2;SB=0.71429;AB=0.25;ABR=1;ABA=3;RUN=1;SNP;TV
+20	122977	.	T	A	0.153	PASS	NS=368;DP=2071;AC=3;AN=736;AF=0.0040761;RA=2056;AA=6;SR=1062|994;SA=3|3;SB=0.5;AB=0.71429;ABR=10;ABA=4;RUN=4;SNP;TV
+20	122995	.	C	G	0.222	PASS	NS=368;DP=2170;AC=1;AN=736;AF=0.0013587;RA=2158;AA=3;SR=1124|1034;SA=3|0;SB=1;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	123021	.	C	T	0.0437	PASS	NS=368;DP=2290;AC=2;AN=736;AF=0.0027174;RA=2281;AA=4;SR=1221|1060;SA=3|1;SB=0.75;AB=0.76923;ABR=10;ABA=3;RUN=3;SNP;TS
+20	123037	.	T	C	99.0	PASS	NS=367;DP=2305;AC=4;AN=734;AF=0.0054496;RA=2285;AA=13;SR=1267|1018;SA=10|3;SB=0.76923;AB=0.63333;ABR=19;ABA=11;RUN=2;SNP;TS
+20	123073	.	C	T	0.404	PASS	NS=371;DP=2357;AC=2;AN=742;AF=0.0026954;RA=2341;AA=7;SR=1293|1048;SA=5|2;SB=0.71429;AB=0.66667;ABR=6;ABA=3;RUN=1;SNP;TS
+20	123251	.	T	C	71.0	PASS	NS=363;DP=2413;AC=1;AN=726;AF=0.0013774;RA=2393;AA=10;SR=1226|1167;SA=7|3;SB=0.7;AB=0.5;ABR=4;ABA=4;RUN=1;SNP;TS
+20	123318	.	T	C	99.0	PASS	NS=367;DP=2371;AC=24;AN=734;AF=0.032698;RA=2289;AA=73;SR=1174|1115;SA=41|32;SB=0.56164;AB=0.5;ABR=56;ABA=56;RUN=1;SNP;TS
+20	123404	.	T	A	6.08	PASS	NS=365;DP=2328;AC=1;AN=730;AF=0.0013699;RA=2304;AA=6;SR=1114|1190;SA=4|2;SB=0.66667;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	123499	.	C	T	99.0	PASS	NS=367;DP=2330;AC=5;AN=734;AF=0.006812;RA=2298;AA=18;SR=1062|1236;SA=6|12;SB=0.33333;AB=0.38462;ABR=10;ABA=16;RUN=2;SNP;TS
+20	123500	.	A	G	0.191	PASS	NS=367;DP=2342;AC=1;AN=734;AF=0.0013624;RA=2317;AA=13;SR=1062|1255;SA=3|10;SB=0.23077;AB=0.77778;ABR=7;ABA=2;RUN=3;SNP;TS;CpG
+20	123513	.	A	G	1.47	PASS	NS=368;DP=2373;AC=1;AN=736;AF=0.0013587;RA=2358;AA=5;SR=1071|1287;SA=2|3;SB=0.4;AB=0.75;ABR=6;ABA=2;RUN=3;SNP;TS
+20	123556	.	C	G	7.19	PASS	NS=371;DP=2383;AC=1;AN=742;AF=0.0013477;RA=2370;AA=6;SR=1058|1312;SA=2|4;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TV
+20	123564	.	T	C	0.229	PASS	NS=372;DP=2373;AC=1;AN=744;AF=0.0013441;RA=2348;AA=10;SR=1045|1303;SA=3|7;SB=0.3;AB=0.72727;ABR=8;ABA=2;RUN=5;SNP;TS
+20	123809	.	A	T	0.953	PASS	NS=356;DP=1910;AC=1;AN=712;AF=0.0014045;RA=1896;AA=7;SR=843|1053;SA=5|2;SB=0.71429;AB=0.625;ABR=5;ABA=3;RUN=2;SNP;TV
+20	123979	.	C	A	0.314	PASS	NS=363;DP=2152;AC=1;AN=726;AF=0.0013774;RA=2141;AA=3;SR=1118|1023;SA=1|2;SB=0.33333;AB=0.75;ABR=6;ABA=2;RUN=2;SNP;TV
+20	124059	.	C	T	37.8	PASS	NS=358;DP=1984;AC=3;AN=716;AF=0.0041899;RA=1971;AA=7;SR=971|1000;SA=5|2;SB=0.71429;AB=0.44444;ABR=4;ABA=5;RUN=1;SNP;TS;CpG
+20	124060	.	G	A	34.6	PASS	NS=359;DP=1991;AC=1;AN=718;AF=0.0013928;RA=1983;AA=3;SR=995|988;SA=2|1;SB=0.66667;AB=0.5;ABR=3;ABA=3;RUN=2;SNP;TS;CpG
+20	124137	.	C	A	0.0701	PASS	NS=357;DP=1933;AC=1;AN=714;AF=0.0014006;RA=1922;AA=4;SR=990|932;SA=0|4;SB=0;AB=0.5;ABR=1;ABA=1;RUN=2;SNP;TV
+20	124148	.	A	G	0.344	PASS	NS=358;DP=1957;AC=2;AN=716;AF=0.0027933;RA=1947;AA=6;SR=989|958;SA=1|5;SB=0.16667;AB=0.8;ABR=12;ABA=3;RUN=1;SNP;TS
+20	124229	.	T	C	0.672	PASS	NS=356;DP=1979;AC=1;AN=712;AF=0.0014045;RA=1972;AA=4;SR=1025|947;SA=1|3;SB=0.25;AB=0.8;ABR=8;ABA=2;RUN=1;SNP;TS
+20	124230	.	A	G	0.0816	PASS	NS=356;DP=1970;AC=1;AN=712;AF=0.0014045;RA=1959;AA=4;SR=1026|933;SA=1|3;SB=0.25;AB=0.81818;ABR=9;ABA=2;RUN=1;SNP;TS
+20	124249	.	A	G	99.0	PASS	NS=359;DP=1969;AC=41;AN=718;AF=0.057103;RA=1864;AA=101;SR=974|890;SA=55|46;SB=0.54455;AB=0.51977;ABR=92;ABA=85;RUN=1;SNP;TS;CpG
+20	124302	.	A	C	99.0	PASS	NS=358;DP=2007;AC=319;AN=716;AF=0.44553;RA=1185;AA=819;SR=577|608;SA=392|427;SB=0.47863;AB=0.51934;ABR=376;ABA=348;RUN=2;SNP;TV;HM3
+20	124335	.	C	T	99.0	PASS	NS=361;DP=2035;AC=4;AN=722;AF=0.0055402;RA=2013;AA=15;SR=929|1084;SA=10|5;SB=0.66667;AB=0.3913;ABR=9;ABA=14;RUN=1;SNP;TS
+20	124412	.	C	T	99.0	PASS	NS=357;DP=2005;AC=307;AN=714;AF=0.42997;RA=1207;AA=795;SR=602|605;SA=400|395;SB=0.50314;AB=0.51286;ABR=379;ABA=360;RUN=1;SNP;TS
+20	124511	.	T	A	0.647	PASS	NS=365;DP=2141;AC=1;AN=730;AF=0.0013699;RA=2133;AA=4;SR=1077|1056;SA=2|2;SB=0.5;AB=0.66667;ABR=4;ABA=2;RUN=2;SNP;TV
+20	124607	.	A	G	2.28	PASS	NS=357;DP=1872;AC=1;AN=714;AF=0.0014006;RA=1865;AA=2;SR=930|935;SA=1|1;SB=0.5;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
+20	124737	.	A	C	99.0	PASS	NS=367;DP=2024;AC=4;AN=734;AF=0.0054496;RA=2003;AA=16;SR=1046|957;SA=11|5;SB=0.6875;AB=0.26316;ABR=5;ABA=14;RUN=1;SNP;TV
+20	124827	.	T	C	1.7	PASS	NS=367;DP=2059;AC=1;AN=734;AF=0.0013624;RA=2048;AA=4;SR=987|1061;SA=2|2;SB=0.5;AB=0.6;ABR=3;ABA=2;RUN=2;SNP;TS
+20	124848	.	A	G	36.5	PASS	NS=364;DP=2077;AC=1;AN=728;AF=0.0013736;RA=2060;AA=6;SR=966|1094;SA=2|4;SB=0.33333;AB=0.57143;ABR=4;ABA=3;RUN=1;SNP;TS
+20	124878	.	G	A	0.22	PASS	NS=361;DP=2060;AC=1;AN=722;AF=0.001385;RA=2049;AA=4;SR=974|1075;SA=3|1;SB=0.75;AB=0.77778;ABR=7;ABA=2;RUN=1;SNP;TS
+20	124920	.	A	G	76.0	PASS	NS=361;DP=1956;AC=1;AN=722;AF=0.001385;RA=1949;AA=6;SR=984|965;SA=2|4;SB=0.33333;AB=0.14286;ABR=1;ABA=6;RUN=1;SNP;TS;CpG
+20	124942	.	A	T	1.44	PASS	NS=362;DP=2015;AC=1;AN=724;AF=0.0013812;RA=2007;AA=4;SR=1107|900;SA=1|3;SB=0.25;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	124998	.	T	C	99.0	PASS	NS=366;DP=2204;AC=29;AN=732;AF=0.039617;RA=2131;AA=66;SR=1132|999;SA=36|30;SB=0.54545;AB=0.54902;ABR=56;ABA=46;RUN=1;SNP;TS
+20	125096	.	C	G	4.18	PASS	NS=363;DP=2095;AC=1;AN=726;AF=0.0013774;RA=2082;AA=2;SR=1071|1011;SA=2|0;SB=1;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TV
+20	125109	.	A	T	0.0858	PASS	NS=365;DP=2091;AC=2;AN=730;AF=0.0027397;RA=2080;AA=7;SR=1103|977;SA=7|0;SB=1;AB=0.66667;ABR=6;ABA=3;RUN=8;SNP;TV
+20	125121	.	C	T	99.0	PASS	NS=364;DP=2075;AC=208;AN=728;AF=0.28571;RA=1472;AA=599;SR=826|646;SA=335|264;SB=0.55927;AB=0.49868;ABR=377;ABA=378;RUN=1;SNP;TS;HM3
+20	125179	.	C	A	99.0	PASS	NS=368;DP=2155;AC=7;AN=736;AF=0.0095109;RA=2127;AA=26;SR=1123|1004;SA=16|10;SB=0.61538;AB=0.36842;ABR=14;ABA=24;RUN=2;SNP;TV
+20	125266	.	T	A	3.47	PASS	NS=364;DP=2138;AC=1;AN=728;AF=0.0013736;RA=2123;AA=5;SR=907|1216;SA=1|4;SB=0.2;AB=0.6;ABR=3;ABA=2;RUN=1;SNP;TV
+20	125381	.	A	G	4.69	PASS	NS=362;DP=2102;AC=1;AN=724;AF=0.0013812;RA=2094;AA=3;SR=919|1175;SA=1|2;SB=0.33333;AB=0.66667;ABR=4;ABA=2;RUN=1;SNP;TS
+20	125450	.	G	A	0.364	PASS	NS=359;DP=1881;AC=1;AN=718;AF=0.0013928;RA=1868;AA=5;SR=862|1006;SA=1|4;SB=0.2;AB=0.71429;ABR=5;ABA=2;RUN=2;SNP;TS
+20	125470	.	A	G	0.602	PASS	NS=360;DP=1870;AC=1;AN=720;AF=0.0013889;RA=1855;AA=5;SR=909|946;SA=3|2;SB=0.6;AB=0.75;ABR=6;ABA=2;RUN=1;SNP;TS
diff -r 000000000000 -r b001b50f2009 tools.py
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools.py	Mon Jan 27 09:28:06 2014 -0500
@@ -0,0 +1,188 @@
+#!/usr/bin/python
+
+import os.path
+import sys
+import vcfPytools
+from vcfPytools import __version__
+
+# Determine whether to output to a file or stdout.
+def setOutput(output):
+  if output == None:
+    outputFile = sys.stdout
+    writeOut = False
+  else:
+    output = os.path.abspath(output)
+    outputFile = open(output, 'w')
+    writeOut = True
+
+  return outputFile, writeOut
+
+# Determine which file has priority for writing out records.
+def setVcfPriority(priorityFile, vcfFiles):
+  if priorityFile == None: priority = 0
+  elif priorityFile == vcfFiles[0]: priority = 1
+  elif priorityFile == vcfFiles[1]: priority = 2
+  elif priorityFile.lower() == "merge": priority = 3
+  else:
+    print >> sys.stderr, "vcf file give priority must be one of the two input vcf files or merge."
+    exit(1)
+
+  return priority
+
+# If the union or intersection of two vcf files is being performed
+# and the output vcf file is to contain the information from both
+# files, the headers need to be merged to ensure that all info and
+# format entries have an explanation.
+def mergeHeaders(v1, v2, v3):
+
+# If either file does not have a header, terminate the program.
+# In order to merge the headers, the different fields must be
+# checked to ensure the files are compatible.
+  if not v1.hasHeader or not v2.hasHeader:
+    print >> sys.stderr, "Both vcf files must have a header in order to merge data sets."
+    exit(1)
+
+  v3.infoHeaderTags = v1.infoHeaderTags.copy()
+  v3.formatHeaderTags = v1.formatHeaderTags.copy()
+  v3.numberDataSets = v1.numberDataSets
+  v3.includedDataSets = v1.includedDataSets.copy()
+  v3.headerText = v1.headerText
+  v3.headerTitles = v1.headerTitles
+  v3.infoHeaderString = v1.infoHeaderString.copy()
+  v3.formatHeaderString = v1.formatHeaderString.copy()
+
+# Merge the info field descriptions.
+  for tag in v2.infoHeaderTags:
+    if v1.infoHeaderTags.has_key(tag):
+      if v1.infoHeaderTags[tag][0] != v2.infoHeaderTags[tag][0] or \
+         v1.infoHeaderTags[tag][1] != v2.infoHeaderTags[tag][1]:
+        print v1.infoHeaderTags[tag][0]
+        print v1.infoHeaderTags[tag][1]
+        print v1.infoHeaderTags[tag][2]
+        print >> sys.stderr, "Input vcf files have different definitions for " + tag + " field."
+        exit(1)
+    else: v3.infoHeaderTags[tag] = v2.infoHeaderTags[tag]
+
+# Merge the format field descriptions.
+  for tag in v2.formatHeaderTags:
+    if v1.formatHeaderTags.has_key(tag):
+      if v1.formatHeaderTags[tag][0] != v2.formatHeaderTags[tag][0] or \
+         v1.formatHeaderTags[tag][1] != v2.formatHeaderTags[tag][1]:
+        print >> sys.stderr, "Input vcf files have different definitions for " + tag + " field."
+        exit(1)
+    else: v3.formatHeaderTags[tag] = v2.formatHeaderTags[tag]
+
+# Now check to see if the vcf files contain information from multiple
+# records themselves and create an ordered list in which the data
+# will appear in the file.  For instance, of the first file has
+# already got two sets of data and is being intersected with a file
+# with one set of data, the order of data in the new vcf file will be
+# the two sets from the first file followed by the second, e.g.
+# AB=3/2/4, where the 3 and 2 are from the first file and the 4 is the
+# value of AC from the second vcf.  The header will have a ##FILE for
+# each of the three files, so the origin if the data can be recovered.
+  if v1.numberDataSets == 0:
+    v3.includedDataSets[v3.numberDataSets + 1] = v1.filename
+    v3.numberDataSets += 1
+  if v2.numberDataSets == 0:
+    v3.includedDataSets[v3.numberDataSets + 1] = v2.filename
+    v3.numberDataSets += 1
+  else:
+    for i in range(1, v2.numberDataSets + 1):
+      v3.includedDataSets[v3.numberDataSets + 1] = v2.includedDataSets[i]
+      v3.numberDataSets += 1
+
+# If either of the input files contain multiple data sets (e.g. multiple
+# vcf files have undergone intersection or union calculations and all
+# information has been retained) and the priority isn't set to 'merge',
+# terminate the program.  This is to ensure that the origin of the data
+# doesn't get confused.
+def checkDataSets(v1, v2):
+  if v1.numberDataSets + v2.numberDataSets != 0:
+    print >> sys.stderr, "\nERROR:"
+    print >> sys.stderr, "input vcf file(s) contain data sets from multiple vcf files."
+    print >> sys.stderr, "Further intersection or union operations must include --priority-file merge"
+    print >> sys.stderr, "Other tools may be incompatible with this format."
+    exit(1)
+
+# Write the header to file.
+def writeHeader (outputFile, v, removeGenotypes, taskDescriptor):
+  if not v.hasHeader: 
+    v.headerText = "##fileformat=VCFv4.0\n##source=vcfPytools " + __version__ + "\n"
+    v.headerTitles = "#CHROM\tPOS\tID\tREF\tALT\tQUAL\tFILTER\tINFO\n"
+  outputFile.write(v.headerText) if v.headerText != "" else None
+  print >> outputFile, taskDescriptor
+  for tag in v.infoHeaderString: print >> outputFile, v.infoHeaderString[tag]
+  for tag in v.formatHeaderString: print >> outputFile, v.formatHeaderString[tag]
+
+# Write out a list of files indicating which data set belongs to which file.
+  if v.numberDataSets != 0:
+    for i in range(1, v.numberDataSets + 1):
+      print >> outputFile, "##FILE=<ID=" + str(i) + ",\"" + v.includedDataSets[i] + "\">"
+
+  if removeGenotypes:
+    line = v.headerTitles.rstrip("\n").split("\t")
+    newHeaderTitles = line[0]
+    for i in range(1,8):
+      newHeaderTitles = newHeaderTitles + "\t" + line[i]
+    newHeaderTitles = newHeaderTitles + "\n"
+    outputFile.write( newHeaderTitles )
+  else:
+    outputFile.write( v.headerTitles )
+
+# Check that the two reference sequence lists are identical.
+# If there are a different number or order, the results may
+# not be as expected.
+def checkReferenceSequenceLists(list1, list2):
+  errorMessage = False
+  if len(list1) != len(list2):
+    print >> sys.stderr, "WARNING: Input files contain a different number of reference sequences."
+    errorMessage = True
+  elif list1 != list2:
+    print >> sys.stderr, "WARNING: Input files contain different or differently ordered reference sequences."
+    errorMessage = True
+  if errorMessage:
+    print >> sys.stderr, "Results may not be as expected."
+    print >> sys.stderr, "Ensure that input files have the same reference sequences in the same order."
+    print >> sys.stderr, "Reference sequence lists observed were:\n\t", list1, "\n\t", list2
+
+# Write out a vcf record to file.  The record written depends on the
+# value of 'priority' and could therefore be the record from either
+# of the vcf files, or a combination of them.
+
+def writeVcfRecord(priority, v1, v2, outputFile):
+  if priority == 0:
+    if v1.quality >= v2.quality: outputFile.write(v1.record)
+    else: outputFile.write(v2.record)
+  elif priority == 1: outputFile.write(v1.record)
+  elif priority == 2: outputFile.write(v2.record)
+  elif priority == 3:
+
+# Define the missing entry values (depends on the number of data sets
+# in the file).
+    info = ""
+    missingEntry1 = missingEntry2 = "."
+    for i in range(1, v1.numberDataSets): missingEntry1 += "/."
+    for i in range(1, v2.numberDataSets): missingEntry2 += "/."
+    secondList = v2.infoTags.copy()
+
+# Build up the info field.
+    for tag in v1.infoTags:
+      if secondList.has_key(tag):
+        if v1.infoHeaderTags[tag][1].lower() != "flag": info += tag + "=" + v1.infoTags[tag] + "/" + v2.infoTags[tag] + ";"
+        del secondList[tag]
+      else: 
+        if v1.infoHeaderTags[tag][1].lower() != "flag": info += tag + "=" + v1.infoTags[tag] + "/" + missingEntry2 + ";"
+
+# Now include the info tags that are not populated in the first vcf file.
+    for tag in secondList:
+      if v2.infoHeaderTags[tag][1].lower() != "flag": info += tag + "=" + missingEntry1 + "/" + v2.infoTags[tag] + ";"
+
+# Build the complete record.
+    info = info.rstrip(";")
+    record = v1.referenceSequence + "\t" + str(v1.position) + "\t" + v1.rsid + "\t" + v1.ref + "\t" + \
+             v1.alt + "/" + v2.alt + "\t" + v1.quality + "/" + v2.quality + "\t.\t" + info
+    print >> outputFile, record
+  else:
+    print >> sys.sterr, "Unknown file priority."
+    exit(1)
diff -r 000000000000 -r b001b50f2009 vcfClass.py
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/vcfClass.py	Mon Jan 27 09:28:06 2014 -0500
@@ -0,0 +1,440 @@
+#!/usr/bin/python
+
+import os.path
+import sys
+import re
+
+class vcf:
+  def __init__(self):
+
+# Header info.
+    self.filename = ""
+    self.hasHeader = True
+    self.headerText = ""
+    self.headerTitles = ""
+    self.vcfFormat = ""
+    #self.headerInfoText = ""
+    #self.headerFormatText = ""
+
+# Store the info and format tags as well as the lines that describe
+# them in a dictionary.
+    self.numberDataSets = 0
+    self.includedDataSets = {}
+    self.infoHeaderTags = {}
+    self.infoHeaderString = {}
+    self.formatHeaderTags = {}
+    self.formatHeaderString = {}
+
+# Genotype information.
+    self.genotypes = False
+    self.infoField = {}
+
+# Reference sequence information.
+    self.referenceSequences = {}
+    self.referenceSequenceList = []
+    self.referenceSequence = ""
+
+# Record information.
+    self.position = -1
+    self.samplesList = []
+
+# Determine which fields to process.
+    self.processInfo = False
+    self.processGenotypes = False
+    self.dbsnpVcf = False
+    self.hapmapVcf = False
+
+# Open a vcf file.
+  def openVcf(self, filename):
+    if filename == "stdin":
+      self.filehandle = sys.stdin
+      self.filename = "stdin"
+    else:
+      try: self.filehandle = open(filename,"r")
+      except IOError:
+        print >> sys.stderr, "Failed to find file: ",filename
+        exit(1)
+      self.filename = os.path.abspath(filename)
+
+# Parse the vcf header.
+  def parseHeader(self, filename, writeOut):
+    while self.getHeaderLine(filename, writeOut):
+      continue
+
+# Determine the type of information in the header line.
+  def getHeaderLine(self, filename, writeOut):
+    self.headerLine = self.filehandle.readline().rstrip("\n")
+    if self.headerLine.startswith("##fileformat"): success = self.getvcfFormat()
+    if self.headerLine.startswith("##INFO"): success = self.headerInfo(writeOut, "info")
+    elif self.headerLine.startswith("##FORMAT"): success = self.headerInfo(writeOut, "format")
+    elif self.headerLine.startswith("##FILE"): success = self.headerFiles(writeOut)
+    elif self.headerLine.startswith("##"): success = self.headerAdditional()
+    elif self.headerLine.startswith("#"): success = self.headerTitleString(filename, writeOut)
+    else: success = self.noHeader(filename, writeOut)
+
+    return success
+
+# Read VCF format
+  def getvcfFormat(self):
+      try:
+          self.vcfFormat = self.headerLine.split("=",1)[1]
+          self.vcfFormat = float( self.vcfFormat.split("VCFv",1)[1] )## Extract the version number rather than the whole string
+      except IndexError:
+          print >> sys.stderr, "\nError parsing the fileformat"
+          print >> sys.stderr, "The following fileformat header is wrongly formatted: ", self.headerLine
+          exit(1)
+      return True
+
+
+# Read information on an info field from the header line.
+  def headerInfo(self, writeOut, lineType):
+    tag = self.headerLine.split("=",1)
+    tagID = (tag[1].split("ID=",1))[1].split(",",1)
+
+# Check if this info field has already been defined.
+    if (lineType == "info" and self.infoHeaderTags.has_key(tagID[0])) or (lineType == "format" and self.formatHeaderTags.has_key(tagID[0])):
+      print >> sys.stderr, "Info tag \"", tagID[0], "\" is defined multiple times in the header."
+      exit(1)
+
+# Determine the number of entries, entry type and description.
+    tagNumber = (tagID[1].split("Number=",1))[1].split(",",1)
+    tagType = (tagNumber[1].split("Type=",1))[1].split(",",1)
+    try: tagDescription = ( ( (tagType[1].split("Description=\"",1))[1] ).split("\">") )[0]
+    except IndexError: tagDescription = ""
+    tagID = tagID[0]; tagNumber = tagNumber[0]; tagType = tagType[0]
+
+# Check that the number of fields associated with the tag is either
+# an integer or a '.' to indicate variable number of entries.
+    if tagNumber == ".": tagNumber = "variable"
+    else:
+      if self.vcfFormat<4.1:
+
+        try:
+            tagNumber = int(tagNumber)
+
+        except ValueError:
+            print >> sys.stderr, "\nError parsing header.  Problem with info tag:", tagID
+            print >> sys.stderr, "Number of fields associated with this tag is not an integer or '.'"
+            exit(1)
+
+    if lineType == "info":
+      self.infoHeaderTags[tagID] = tagNumber, tagType, tagDescription
+      self.infoHeaderString[tagID] = self.headerLine
+    if lineType == "format":
+      self.formatHeaderTags[tagID] = tagNumber, tagType, tagDescription
+      self.formatHeaderString[tagID] = self.headerLine
+
+    return True
+
+# Check to see if the records contain information from multiple different
+# sources.  If vcfPytools has been used to find the intersection or union
+# of two vcf files, the records may have been merged to keep all the
+# information available.  If this is the case, there will be a ##FILE line
+# for each set of information in the file.  The order of these files needs
+# to be maintained.
+  def headerFiles(self, writeOut):
+    fileID = (self.headerLine.split("ID=",1))[1].split(",",1)
+    filename = fileID[1].split("\"",2)[1]
+    try: fileID = int(fileID[0])
+    except ValueError:
+      print >> sys.stderr, "File ID in ##FILE entry must be an integer."
+      print >> sys.stderr, self.headerLine
+      exit(1)
+    if self.includedDataSets.has_key(fileID):
+      print >> sys.stderr, "\nERROR: file " + self.filename
+      print >> sys.stderr, "Multiple files in the ##FILE list have identical ID values."
+      exit(1)
+    self.includedDataSets[fileID] = filename
+
+# Set the number of files with information in this vcf file.
+    if fileID > self.numberDataSets: self.numberDataSets = fileID
+
+    return True
+
+# Read additional information contained in the header.
+  def headerAdditional(self):
+    self.headerText += self.headerLine + "\n"
+
+    return True
+
+# Read in the column titles to check that all standard fields
+# are present and read in all the samples.
+  def headerTitleString(self, filename, writeOut):
+    self.headerTitles = self.headerLine + "\n"
+
+# Strip the end of line character from the last infoFields entry.
+    infoFields = self.headerLine.split("\t")
+    if len(infoFields) > 8:
+#      if len(infoFields) - 9 == 1 and writeOut: print >> sys.stdout, len(infoFields) - 9, " sample present in vcf file: ", filename
+#      elif writeOut: print >> sys.stdout, len(infoFields) - 9, " samples present in vcf file: ", filename
+      self.samplesList = infoFields[9:]
+      self.genotypes = True
+    elif len(infoFields) == 8:
+      if writeOut: print >> sys.stdout, "No samples present in the header.  No genotype information available."
+    else:
+      print self.headerLine, len(infoFields)
+      print >> sys.stderr, "Not all vcf standard fields are available."
+      exit(1)
+
+    return False
+
+# If there is no header in the vcf file, close and reopen the
+# file so that the first line is avaiable for parsing as a
+# vcf record.
+  def noHeader(self, filename, writeOut):
+    if writeOut: print >> sys.stdout, "No header lines present in", filename
+    self.hasHeader = False
+    self.closeVcf(filename)
+    self.openVcf(filename)
+
+    return False
+
+# Check that info fields exist.
+  def checkInfoFields(self, tag):
+    if self.infoHeaderTags.has_key(tag) == False:
+      print >> sys.stderr, "Info tag \"", tag, "\" does not exist in the header."
+      exit(1)
+
+# Get the next line of information from the vcf file.
+  def getRecord(self):
+    self.record = self.filehandle.readline()
+    if not self.record: return False
+
+# Set up and execute a regular expression match.
+    recordRe = re.compile(r"^(\S+)\t(\d+)\t(\S+)\t(\S+)\t(\S+)\t(\S+)\t(\S+)\t(\S+)(\n|\t.+)$")
+    #recordRe = re.compile(r"^(\S+)\s+(\d+)\s+(\S+)\s+(\S+)\s+(\S+)\s+(\S+)\s+(\S+)\s+(\S+)(\n|\s+.+)$")
+    recordMatch = recordRe.match(self.record)
+    if recordMatch == None:
+      print >> sys.stderr, "Unable to resolve vcf record.\n"
+      print >> sys.stderr, self.record
+      exit(1)
+
+    self.referenceSequence = recordMatch.group(1)
+    try: self.position = int(recordMatch.group(2))
+    except ValueError:
+      text = "variant position is not an integer"
+      self.generalError(text, "", None)
+    self.rsid       = recordMatch.group(3)
+    self.ref        = recordMatch.group(4)
+    self.alt        = recordMatch.group(5)
+    self.quality    = recordMatch.group(6)
+    self.filters    = recordMatch.group(7)
+    self.info       = recordMatch.group(8)
+    self.genotypeString = recordMatch.group(9)
+    self.infoTags   = {}
+
+# Check that the quality is an integer or a float.  If not, set the quality
+# to zero.
+    try: self.quality = float(self.quality)
+    except ValueError: self.quality = float(0.)
+
+# If recordMatch.group(9) is not the end of line character, there is
+# genotype information with this record.
+    if self.genotypeString != "\n": self.hasGenotypes = True
+    else: self.hasGenotypes = False
+
+# Add the reference sequence to the dictionary.  If it didn't previously
+# exist append the reference sequence to the end of the list as well.
+# This ensures that the order in which the reference sequences appeared
+# in the header can be preserved.
+    if self.referenceSequence not in self.referenceSequences:
+      self.referenceSequences[self.referenceSequence] = True
+      self.referenceSequenceList.append(self.referenceSequence)
+
+# Check for multiple alternate alleles.
+    self.alternateAlleles = self.alt.split(",")
+    self.numberAlternateAlleles = len(self.alternateAlleles)
+
+# If required, process the info and genotypes.
+    if self.processInfo: self.processInfoFields()
+    if self.processGenotypes and self.hasGenotypes: self.processGenotypeFields()
+
+    return True
+
+# Process the info string.
+  def processInfoFields(self):
+
+# First break the info string into its constituent elements.
+    infoEntries = self.info.split(";")
+
+# As long as some info fields exist, place them into a dictionary.
+    for entry in infoEntries:
+      infoEntry = entry.split("=")
+
+# If the entry is a flag, there will be no equals and the length of
+# infoEntry will be 1.  In this case, set the dictionary entry to the
+# whole entry.  If the vcf file has undergone a union or intersection
+# operation and contains the information from multiple files, this may
+# be a '/' seperate list of flags and so cannot be set to a Boolean value
+# yet.
+      if len(infoEntry) == 1: self.infoTags[infoEntry[0]] = infoEntry[0]
+      elif len(infoEntry) > 1: self.infoTags[infoEntry[0]] = infoEntry[1]
+
+# Process the genotype formats and values.
+  def processGenotypeFields(self):
+    genotypeEntries = self.genotypeString.split("\t")
+    self.genotypeFormatString = genotypeEntries[1]
+    self.genotypes = list(genotypeEntries[2:])
+    self.genotypeFormats = {}
+    self.genotypeFields = {}
+    self.genotypeFormats = self.genotypeFormatString.split(":")
+
+# Check that the number of genotype fields is equal to the number of samples
+    if len(self.samplesList) != len(self.genotypes):
+      text = "The number of genotypes is different to the number of samples"
+      self.generalError(text, "", "")
+
+# Add the genotype information to a dictionary.
+    for i in range( len(self.samplesList) ):
+      genotypeInfo = self.genotypes[i].split(":")
+      self.genotypeFields[ self.samplesList[i] ] = {}
+
+# Check that there are as many fields as in the format field.  If not, this must
+# be because the information is not known.  In this case, it is permitted that
+# the genotype information is either . or ./.
+      if genotypeInfo[0] == "./." or genotypeInfo[0] == "." and len(self.genotypeFormats) != len(genotypeInfo):
+        self.genotypeFields[ self.samplesList[i] ] = "."
+      else:
+        if len(self.genotypeFormats) != len(genotypeInfo):
+          text = "The number of genotype fields is different to the number specified in the format string"
+          self.generalError(text, "sample", self.samplesList[i])
+
+        for j in range( len(self.genotypeFormats) ): self.genotypeFields[ self.samplesList[i] ][ self.genotypeFormats[j] ] = genotypeInfo[j]
+
+# Parse through the vcf file until the correct reference sequence is
+# encountered and the position is greater than or equal to that requested.
+  def parseVcf(self, referenceSequence, position, writeOut, outputFile):
+    success = True
+    if self.referenceSequence != referenceSequence:
+      while self.referenceSequence != referenceSequence and success:
+        if writeOut: outputFile.write(self.record)
+        success = self.getRecord()
+
+    while self.referenceSequence == referenceSequence and self.position < position and success:
+      if writeOut: outputFile.write(self.record)
+      success = self.getRecord()
+
+    return success
+
+# Get the information for a specific info tag.  Also check that it contains
+# the correct number and type of entries.
+  def getInfo(self, tag):
+    result = []
+
+# Check if the tag exists in the header information.  If so,
+# determine the number and type of entries asscoiated with this
+# tag.
+    if self.infoHeaderTags.has_key(tag):
+      infoNumber = self.infoHeaderTags[tag][0]
+      infoType = self.infoHeaderTags[tag][1]
+      numberValues = infoNumber
+
+# First check that the tag exists in the information string.  Then split
+# the entry on commas.  For flag entries, do not perform the split.
+      if self.infoTags.has_key(tag):
+        if numberValues == 0 and infoType == "Flag": result = True
+        elif numberValues != 0 and infoType == "Flag":
+          print >> sys.stderr, "ERROR"
+          exit(1)
+        else:
+          fields = self.infoTags[tag].split(",")
+          if len(fields) != numberValues:
+            text = "Unexpected number of entries"
+            self.generalError(text, "information tag", tag)
+
+          for i in range(infoNumber):
+            try: result.append(fields[i])
+            except IndexError:
+              text = "Insufficient values. Expected: " + self.infoHeaderTags[tag][0]
+              self.generalError(text, "tag:", tag)
+      else: numberValues = 0
+
+    else:
+      text = "information field does not have a definition in the header"
+      self.generalError(text, "tag", tag)
+
+    return numberValues, infoType, result
+
+# Get the genotype information.
+  def getGenotypeInfo(self, sample, tag):
+    result = []
+    if self.formatHeaderTags.has_key(tag):
+      infoNumber = self.formatHeaderTags[tag][0]
+      infoType = self.formatHeaderTags[tag][1]
+      numberValues = infoNumber
+
+      if self.genotypeFields[sample] == "." and len(self.genotypeFields[sample]) == 1:
+        numberValues = 0
+        result = "."
+      else:
+        if self.genotypeFields[sample].has_key(tag):
+          if tag == "GT":
+            if len(self.genotypeFields[sample][tag]) != 3 and len(self.genotypeFields[sample][tag]) != 1:
+              text = "Unexected number of characters in genotype (GT) field"
+              self.generalError(text, "sample", sample)
+
+# If a diploid call, check whether or not the genotype is phased.
+            elif len(self.genotypeFields[sample][tag]) == 3:
+              self.phased = True if self.genotypeFields[sample][tag][1] == "|" else False
+              result.append( self.genotypeFields[sample][tag][0] )
+              result.append( self.genotypeFields[sample][tag][2] )
+            elif len(self.genotypeFields[sample][tag]) == 3:
+              result.append( self.genotypeFields[sample][tag][0] )
+          else:
+            fields = self.genotypeFields[sample][tag].split(",")
+            if len(fields) != numberValues:
+              text = "Unexpected number of characters in " + tag + " field"
+              self.generalError(text, "sample", sample)
+
+            for i in range(infoNumber): result.append(fields[i])
+    else:
+      text = "genotype field does not have a definition in the header"
+      self.generalError(text, "tag", tag)
+
+    return numberValues, result
+
+# Parse the dbsnp entry.  If the entry conforms to the required variant type,
+# return the dbsnp rsid value, otherwise ".".
+  def getDbsnpInfo(self):
+
+# First check that the variant class (VC) is listed as SNP.
+    vc = self.info.split("VC=",1)
+    if vc[1].find(";") != -1: snp = vc[1].split(";",1)
+    else:
+      snp = []
+      snp.append(vc[1])
+
+    if snp[0].lower() == "snp": rsid = self.rsid
+    else: rsid = "."
+
+    return rsid
+
+# Build a new vcf record.
+  def buildRecord(self, removeGenotypes):
+    record = self.referenceSequence + "\t" + \
+                str(self.position) + "\t" + \
+                self.rsid + "\t" + \
+                self.ref + "\t" + \
+                self.alt + "\t" + \
+                str(self.quality) + "\t" + \
+                self.filters + "\t" + \
+                self.info
+
+    if self.hasGenotypes and not removeGenotypes: record += self.genotypeString
+
+    record += "\n"
+
+    return record
+
+# Close the vcf file.
+  def closeVcf(self, filename):
+    self.filehandle.close()
+
+# Define error messages for different handled errors.
+  def generalError(self, text, field, fieldValue):
+    print >> sys.stderr, "\nError encountered when attempting to read:"
+    print >> sys.stderr, "\treference sequence :\t", self.referenceSequence
+    print >> sys.stderr, "\tposition :\t\t", self.position
+    if field != "": print >> sys.stderr, "\t", field, ":\t", fieldValue
+    print >> sys.stderr,  "\n", text
+    exit(1)
diff -r 000000000000 -r b001b50f2009 vcfPytools.py
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/vcfPytools.py	Mon Jan 27 09:28:06 2014 -0500
@@ -0,0 +1,82 @@
+#!/usr/bin/python
+
+import os.path
+import sys
+
+__author__ = "alistair ward"
+__version__ = "version 0.26"
+__date__ = "february 2011"
+
+def main():
+  usage = "Usage: vcfPytools.py [tool] [options]\n\n" + \
+          "Available tools:\n" + \
+          "  annotate:\n\tAnnotate the vcf file with membership in other vcf files.\n" + \
+          "  extract:\n\tExtract vcf records from a region.\n" + \
+          "  filter:\n\tFilter the vcf file.\n" + \
+          "  intersect:\n\tGenerate the intersection of two vcf files.\n" + \
+          "  merge:\n\tMerge a list of vcf files.\n" + \
+          "  multi:\n\tFind the intersections and unique fractions of multiple vcf files.\n" + \
+          "  sort:\n\tSort a vcf file.\n" + \
+          "  stats:\n\tGenerate statistics from a vcf file.\n" + \
+          "  union:\n\tGenerate the union of two vcf files.\n" + \
+          "  unique:\n\tGenerate the unique fraction from two vcf files.\n" + \
+          "  validate:\n\tValidate the input vcf file.\n\n" + \
+          "vcfPytools.py [tool] --help for information on a specific tool."
+
+# Determine the requested tool.
+
+  if len(sys.argv) > 1:
+    tool = sys.argv[1]
+  else:
+    print >> sys.stderr, usage
+    exit(1)
+
+  if tool == "annotate":
+    import annotate
+    success = annotate.main()
+  elif tool == "extract":
+    import extract
+    success = extract.main()
+  elif tool == "filter":
+    import filter
+    success = filter.main()
+  elif tool == "intersect":
+    import intersect
+    success = intersect.main()
+  elif tool == "multi":
+    import multi
+    success = multi.main()
+  elif tool == "merge":
+    import merge
+    success = merge.main()
+  elif tool == "sort":
+    import sort
+    success = sort.main()
+  elif tool == "stats":
+    import stats
+    success = stats.main()
+  elif tool == "union":
+    import union
+    success = union.main()
+  elif tool == "unique":
+    import unique
+    success = unique.main()
+  elif tool == "test":
+    import test
+    success = test.main()
+  elif tool == "validate":
+    import validate
+    success = validate.main()
+  elif tool == "--help" or tool == "-h" or tool == "?":
+    print >> sys.stderr, usage
+  else:
+    print >> sys.stderr, "Unknown tool: ",tool
+    print >> sys.stderr, "\n", usage
+    exit(1)
+
+# If program completed properly, terminate.
+
+  if success == 0: exit(0)
+
+if __name__ == "__main__":
+  main()