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| author | devteam |
|---|---|
| date | Mon, 27 Jan 2014 09:27:27 -0500 |
| parents | |
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##fileformat=VCFv4.0 ##vcfPytools=intersect /Users/rc/work/galaxy_lims/galaxy-central/database/files/000/dataset_17.dat, /Users/rc/work/galaxy_lims/galaxy-central/database/files/000/dataset_18.dat #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT chr10 chr11 chr10 131337 . A G 27.5 . DP=4;AF1=0.5718;CI95=0.5,1;DP4=1,0,0,3;MQ=48;PV4=0.25,1,0.19,1 PL:DP:SP:GT:GQ 57,0,6:4:0:0/1:8 chr10 255907 . T G 12.3 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=12,4,0,6;MQ=49;PV4=0.0028,8.2e-05,8.2e-05,0.072 PL:DP:SP:GT:GQ 42,0,255:22:26:0/1:45 chr10 282897 . C T 54.6 . DP=20;AF1=0.5939;CI95=0.5,1;DP4=0,1,1,13;MQ=49;PV4=1,8.1e-07,0.33,1 PL:DP:SP:GT:GQ 84,0,5:15:0:0/1:7 chr10 292927 . C A 10.2 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 chr10 294953 . A G 17.1 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 chr10 329425 . T C 22 . DP=25;AF1=0.5001;CI95=0.5,0.5;DP4=0,3,0,7;MQ=48;PV4=1,0.11,0.072,1 PL:DP:SP:GT:GQ 52,0,35:10:0:0/1:38 chr10 373048 . T C 43 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=11,8,7,4;MQ=50;PV4=1,8.8e-13,0.055,1 PL:DP:SP:GT:GQ 73,0,255:30:0:0/1:76 chr10 395463 . G A 66 . DP=32;AF1=1;CI95=1,1;DP4=0,0,0,27;MQ=49 PL:DP:SP:GT:GQ 99,81,0:27:0:1/1:99 chr10 430502 . C G 22 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=3,12,7,0;MQ=48;PV4=0.0007,0.022,0.0017,1 PL:DP:SP:GT:GQ 52,0,234:22:32:0/1:55 chr10 445061 . C T 99 . DP=26;AF1=1;CI95=1,1;DP4=1,0,20,3;MQ=48;PV4=1,0.45,0.16,1 PL:DP:SP:GT:GQ 195,46,0:24:0:1/1:99 chr10 459940 . G A 24 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 56,9,0:3:0:1/1:63 chr10 518547 . ACTCT ACT 99 . INDEL;DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,9,0,10;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 199,0,213:20:0:0/1:99 chr10 1052950 . G A 75 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=19,0,9,1;MQ=48;PV4=0.34,6.4e-06,0.0013,1 PL:DP:SP:GT:GQ 105,0,236:29:0:0/1:99 chr10 1061862 . A G 9.52 . DP=54;AF1=0.5;CI95=0.5,0.5;DP4=3,13,0,6;MQ=49;PV4=0.53,0.0013,0.013,1 PL:DP:SP:GT:GQ 39,0,255:22:3:0/1:42 chr10 1142208 . T C 99 . DP=28;AF1=1;CI95=1,1;DP4=0,0,1,25;MQ=49 PL:DP:SP:GT:GQ 153,78,0:26:0:1/1:99 chr10 1230968 . C T 67.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=46 PL:DP:SP:GT:GQ 100,12,0:4:0:1/1:72 chr10 3054036 . T C 4.61 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 chr10 3143643 . A C 11.1 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 chr10 3145906 . A C 54 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=6,0,4,0;MQ=46;PV4=1,0.015,2.1e-06,1 PL:DP:SP:GT:GQ 84,0,164:10:0:0/1:87 chr10 3155237 . A G 50.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=48 PL:DP:SP:GT:GQ 83,15,0:5:0:1/1:75 chr10 3155540 . A G 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,12,1;MQ=48 PL:DP:SP:GT:GQ 143,39,0:13:0:1/1:99 chr10 3155753 . G C 99 . DP=18;AF1=0.5554;CI95=0.5,1;DP4=0,2,2,8;MQ=47;PV4=1,1,0.24,1 PL:DP:SP:GT:GQ 134,0,7:12:0:0/1:10 chr10 3161131 . C T 18 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 chr10 3171995 . G T 72 . DP=11;AF1=1;CI95=1,1;DP4=0,0,7,2;MQ=50 PL:DP:SP:GT:GQ 105,27,0:9:0:1/1:99 chr10 3715278 . T C 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=26 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 chr10 5026052 . A G 25.8 . DP=8;AF1=0.6243;CI95=0.5,1;DP4=0,1,0,3;MQ=46;PV4=1,1,0.065,0.061 PL:DP:SP:GT:GQ 55,0,4:4:0:0/1:6 chr10 5139685 . G A,C 42.3 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 79,19,68,4,0,68:6:0:1/1:75 chr10 5435918 . G A 75 . DP=47;AF1=0.9999;CI95=0.5,1;DP4=1,1,9,1;MQ=48;PV4=0.32,1,0.053,1 PL:DP:SP:GT:GQ 105,3,0:12:5:1/1:41 chr10 5437365 . A G 9.31 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 chr10 5471122 . T C 9.69 . DP=10;AF1=0.7303;CI95=0.5,1;DP4=1,0,3,0;MQ=49;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 38,0,2:4:0:0/1:3 chr10 5471251 . T G 3.54 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.43,0.21,1 PL:DP:SP:GT:GQ 31,0,32:4:0:0/1:31 chr10 5667066 . C A 14.2 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,2;MQ=48;PV4=0.33,0.062,0.11,1 PL:DP:SP:GT:GQ 44,0,80:4:5:0/1:47 chr10 5693379 . A G 11.3 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,2;MQ=49;PV4=1,0.092,0.048,1 PL:DP:SP:GT:GQ 41,0,127:6:0:0/1:44 chr10 5781969 . A T 97 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=10,15,12,6;MQ=49;PV4=0.12,3.3e-14,6.9e-10,1 PL:DP:SP:GT:GQ 127,0,255:43:9:0/1:99 chr10 5790420 . T C 41 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=12,12,5,7;MQ=50;PV4=0.73,2e-16,0.02,1 PL:DP:SP:GT:GQ 71,0,255:36:1:0/1:74 chr10 5804633 . TTC TTCTC 99 . INDEL;DP=11;AF1=0.5718;CI95=0.5,1;DP4=0,2,0,7;MQ=50;PV4=1,1,1,0.47 PL:DP:SP:GT:GQ 168,0,6:9:0:0/1:8 chr10 5978411 . T C 3.54 . DP=34;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,0,3;MQ=50;PV4=0.4,0.23,0.19,1 PL:DP:SP:GT:GQ 31,0,45:6:4:0/1:34 chr10 6063674 . T C 93 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=0,18,0,14;MQ=48;PV4=1,6.4e-17,9.3e-11,1 PL:DP:SP:GT:GQ 123,0,243:32:0:0/1:99 chr10 6148059 . A G 19 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 chr10 6156118 . T C 75 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=48 PL:DP:SP:GT:GQ 108,24,0:8:0:1/1:96 chr10 6258015 . T C 14.2 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=8,0,10,0;MQ=50;PV4=1,5.2e-09,1,1 PL:DP:SP:GT:GQ 44,0,185:18:0:0/1:47 chr10 6258052 . G A 15.1 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=18,0,6,1;MQ=50;PV4=0.28,4.5e-05,0.021,0.45 PL:DP:SP:GT:GQ 45,0,227:25:0:0/1:48 chr10 6335597 . C T 23 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,0.0078,0.012,0.12 PL:DP:SP:GT:GQ 53,0,76:5:0:0/1:56 chr10 6335700 . G A 99 . DP=9;AF1=1;CI95=1,1;DP4=0,0,3,4;MQ=46 PL:DP:SP:GT:GQ 160,21,0:7:0:1/1:84 chr10 7285632 . A G 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=44 PL:DP:SP:GT:GQ 169,24,0:8:0:1/1:96 chr10 7318803 . T C 70 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=43 PL:DP:SP:GT:GQ 102,9,0:3:0:1/1:63 chr10 7605101 . A G 58.1 . DP=18;AF1=0.508;CI95=0.5,0.5;DP4=0,1,3,4;MQ=49;PV4=1,0.0042,0.27,1 PL:DP:SP:GT:GQ 88,0,15:8:0:0/1:18 chr10 7618686 . T G 4 . DP=19;AF1=0.6241;CI95=0.5,1;DP4=1,0,3,0;MQ=50;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 31,0,4:4:0:0/1:6 chr10 7763661 . A G 99 . DP=37;AF1=1;CI95=1,1;DP4=0,0,4,8;MQ=48 PL:DP:SP:GT:GQ 162,36,0:12:0:1/1:99 chr10 7773976 . A G 99 . DP=40;AF1=1;CI95=1,1;DP4=0,2,3,24;MQ=45;PV4=1,1,0.00097,1 PL:DP:SP:GT:GQ 255,33,0:29:0:1/1:99 chr10 7788495 . T C 99 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=44 PL:DP:SP:GT:GQ 141,18,0:6:0:1/1:90 chr10 7866268 . C G 99 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=5,1,10,1;MQ=47;PV4=1,0.14,5.2e-05,1 PL:DP:SP:GT:GQ 140,0,120:17:0:0/1:99 chr10 8006644 . A G 19.1 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=10,2,0,7;MQ=48;PV4=0.00071,2.9e-05,5.9e-07,1 PL:DP:SP:GT:GQ 49,0,255:19:31:0/1:52 chr10 8093034 . G T 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,7,2;MQ=47 PL:DP:SP:GT:GQ 150,27,0:9:0:1/1:99 chr10 8093185 . T C 67 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,2,2,4;MQ=49;PV4=1,3.6e-05,0.1,1 PL:DP:SP:GT:GQ 97,0,116:9:0:0/1:99 chr10 8111621 . C T 8.65 . DP=5;AF1=0.5006;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.2,0.25,1 PL:DP:SP:GT:GQ 38,0,26:4:0:0/1:29 chr10 9765758 . A G 4.13 . DP=7;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,1,0.092,0.33 PL:DP:SP:GT:GQ 32,0,29:4:0:0/1:30 chr10 11299735 . A T 42.3 . DP=38;AF1=0.5336;CI95=0.5,1;DP4=0,1,3,2;MQ=49;PV4=1,0.16,0.29,1 PL:DP:SP:GT:GQ 72,0,9:6:0:0/1:12 chr10 11356093 . TTTT TTTTGTTT 99 . INDEL;DP=42;AF1=0.5;CI95=0.5,0.5;DP4=1,4,12,13;MQ=50;PV4=0.35,1,1,1 PL:DP:SP:GT:GQ 255,0,41:30:4:0/1:44 chr10 11356094 . TTTT TTTGTTT 99 . INDEL;DP=42;AF1=0.5;CI95=0.5,0.5;DP4=0,4,5,2;MQ=50;PV4=0.061,1,1,1 PL:DP:SP:GT:GQ 174,0,71:11:12:0/1:74 chr10 11356095 . TT TTGT 70.5 . INDEL;DP=41;AF1=0.5;CI95=0.5,0.5;DP4=1,6,5,1;MQ=50;PV4=0.029,1,1,1 PL:DP:SP:GT:GQ 108,0,118:13:15:0/1:99 chr10 11789382 . G A 64 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=8,12,18,2;MQ=50;PV4=0.0022,9.8e-14,0.0078,1 PL:DP:SP:GT:GQ 94,0,255:40:27:0/1:97 chr10 11789511 . C G 39 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=6,26,0,13;MQ=49;PV4=0.16,3e-08,0.00025,1 PL:DP:SP:GT:GQ 69,0,255:45:8:0/1:72 chr10 11797467 . G A 99 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=2,11,1,11;MQ=48;PV4=1,8.4e-05,0.00015,0.39 PL:DP:SP:GT:GQ 131,0,255:25:0:0/1:99 chr10 11978499 . T G 20.6 . DP=28;AF1=0.5718;CI95=0.5,1;DP4=0,1,5,0;MQ=49;PV4=0.17,0.2,0.35,1 PL:DP:SP:GT:GQ 50,0,6:6:0:0/1:8 chr10 12191620 . C A 13.2 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=7,1,0,6;MQ=49;PV4=0.0047,0.00066,0.022,1 PL:DP:SP:GT:GQ 43,0,193:14:23:0/1:46 chr10 12198019 . G A 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,0,24;MQ=43 PL:DP:SP:GT:GQ 235,72,0:24:0:1/1:99 chr10 12200125 . C T 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=45 PL:DP:SP:GT:GQ 133,21,0:7:0:1/1:84 chr10 12202866 . A T 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,21,0;MQ=47 PL:DP:SP:GT:GQ 154,63,0:21:0:1/1:99 chr10 12209752 . T C 99 . DP=39;AF1=1;CI95=1,1;DP4=0,0,15,19;MQ=49 PL:DP:SP:GT:GQ 207,102,0:34:0:1/1:99 chr10 12292344 . A G 78 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,15;MQ=48;PV4=1,2.1e-13,6.2e-06,0.3 PL:DP:SP:GT:GQ 108,0,217:27:0:0/1:99 chr10 12858045 . G A 99 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=43 PL:DP:SP:GT:GQ 153,18,0:6:0:1/1:90 chr10 12858409 . A G 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=44 PL:DP:SP:GT:GQ 213,39,0:13:0:1/1:99 chr10 12867598 . C G 81 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=12,6,8,4;MQ=50;PV4=1,2.5e-07,0.01,1 PL:DP:SP:GT:GQ 111,0,255:30:0:0/1:99 chr10 13100381 . A G 3.54 . DP=13;AF1=0.4998;CI95=0.5,0.5;DP4=1,3,2,1;MQ=48;PV4=0.49,0.013,0.0038,1 PL:DP:SP:GT:GQ 31,0,142:7:3:0/1:34 chr10 13214812 . A G 23 . DP=9;AF1=0.5003;CI95=0.5,0.5;DP4=0,1,0,6;MQ=47;PV4=1,0.0037,0.31,1 PL:DP:SP:GT:GQ 53,0,29:7:0:0/1:32 chr10 13237015 . G A 88 . DP=21;AF1=1;CI95=1,1;DP4=1,0,17,0;MQ=48;PV4=1,0.2,0.23,1 PL:DP:SP:GT:GQ 121,25,0:18:0:1/1:99 chr10 13275514 . A T,G 5.44 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:DP:SP:GT:GQ 60,33,37,24,0,37:5:0:1/1:63 chr10 13276179 . A G 99 . DP=10;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=46 PL:DP:SP:GT:GQ 136,24,0:8:0:1/1:96 chr10 13337588 . G A 99 . DP=23;AF1=1;CI95=1,1;DP4=0,1,0,21;MQ=46;PV4=1,1,0.024,1 PL:DP:SP:GT:GQ 163,40,0:22:0:1/1:99 chr10 13375906 . T C 58 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=45 PL:DP:SP:GT:GQ 90,9,0:3:0:1/1:63 chr10 13541724 . TA TAAAACA 99 . INDEL;DP=36;AF1=0.5;CI95=0.5,0.5;DP4=14,0,10,1;MQ=50;PV4=0.44,0.22,0.13,0.052 PL:DP:SP:GT:GQ 212,0,224:25:0:0/1:99 chr10 13653675 . T C 48 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=8,4,0,9;MQ=49;PV4=0.0046,0.0038,0.0049,0.069 PL:DP:SP:GT:GQ 78,0,243:21:23:0/1:81 chr10 13743391 . C A 20 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=6,6,0,6;MQ=49;PV4=0.054,0.034,0.0021,0.19 PL:DP:SP:GT:GQ 50,0,243:18:13:0/1:53 chr10 13782605 . G A 99 . DP=37;AF1=1;CI95=1,1;DP4=0,0,0,33;MQ=48 PL:DP:SP:GT:GQ 155,99,0:33:0:1/1:99 chr10 15014418 . C G 32 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=8,1,8,0;MQ=49;PV4=1,2.1e-11,0.032,0.35 PL:DP:SP:GT:GQ 62,0,239:17:0:0/1:65 chr10 15014440 . A G 75 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=8,0,9,0;MQ=48;PV4=1,1e-07,0.0042,0.4 PL:DP:SP:GT:GQ 105,0,190:17:0:0/1:99 chr10 15014698 . C T 12.3 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,2;MQ=48;PV4=1,0.13,0.008,1 PL:DP:SP:GT:GQ 42,0,96:5:0:0/1:45 chr10 15290696 . C T 99 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=1,12,0,10;MQ=46;PV4=1,0.17,0.0046,1 PL:DP:SP:GT:GQ 129,0,201:23:0:0/1:99 chr10 15713541 . T C 12 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 chr10 15729923 . C T 94 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=18,0,16,0;MQ=48;PV4=1,7.5e-15,1.1e-10,1 PL:DP:SP:GT:GQ 124,0,240:34:0:0/1:99 chr10 16797033 . A G 82 . DP=23;AF1=1;CI95=1,1;DP4=0,1,0,21;MQ=48;PV4=1,0.011,0.23,1 PL:DP:SP:GT:GQ 115,29,0:22:0:1/1:99 chr10 16967401 . C T 13 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 chr10 16979751 . T A 23 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=48;PV4=1,0.47,0.024,1 PL:DP:SP:GT:GQ 53,0,86:10:0:0/1:56 chr10 17151714 . CTCTTC CTC 5.8 . INDEL;DP=23;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,0,2;MQ=50;PV4=0.33,0.5,1,1 PL:DP:SP:GT:GQ 42,0,28:3:0:0/1:31 chr10 17156151 . A G 43.4 . DP=18;AF1=0.5554;CI95=0.5,1;DP4=0,2,5,1;MQ=49;PV4=0.11,1,0.073,0.32 PL:DP:SP:GT:GQ 73,0,7:8:10:0/1:10 chr10 17157630 . C T 99 . DP=41;AF1=1;CI95=1,1;DP4=0,1,3,27;MQ=48;PV4=1,0.00029,0.24,1 PL:DP:SP:GT:GQ 186,43,0:31:0:1/1:99 chr10 17199419 . C G 12.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 chr10 17216556 . C T 7.8 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=11,1,3,1;MQ=49;PV4=0.45,0.00011,0.003,0.17 PL:DP:SP:GT:GQ 37,0,255:16:3:0/1:40 chr10 17645814 . C T 99 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=45 PL:DP:SP:GT:GQ 138,15,0:5:0:1/1:75 chr10 17646088 . T C,A 9.93 . DP=13;AF1=0.8277;CI95=0.5,1;DP4=0,1,0,5;MQ=48;PV4=1,1,0.12,0.073 PL:DP:SP:GT:GQ 66,28,37,29,0,46:6:0:1/1:5 chr10 18138639 . A G 98.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=44 PL:DP:SP:GT:GQ 131,15,0:5:0:1/1:75 chr10 18242304 . T C 99 . DP=26;AF1=0.505;CI95=0.5,0.5;DP4=2,0,7,9;MQ=46;PV4=0.47,0.032,0.014,1 PL:DP:SP:GT:GQ 223,0,17:18:3:0/1:20 chr10 18439747 . C T 35 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,4,0;MQ=48;PV4=1,0.19,0.16,1 PL:DP:SP:GT:GQ 65,0,48:6:0:0/1:51 chr10 18596796 . A T 11.1 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 chr10 18903605 . A C 24 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 56,9,0:3:0:1/1:63 chr10 18931512 . T C 99 . DP=14;AF1=1;CI95=0.5,1;DP4=0,1,0,13;MQ=44;PV4=1,1,3.4e-06,1 PL:DP:SP:GT:GQ 197,16,0:14:0:1/1:80 chr10 18937579 . AAAGAAG AAAGAAGAAG 99 . INDEL;DP=5;AF1=0.5013;CI95=0.5,0.5;DP4=0,1,0,4;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 140,0,23:5:0:0/1:26 chr10 20462052 . A AGTCGTCT 5.8 . INDEL;DP=7;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 chr10 20506418 . G A 99 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=13,16,16,2;MQ=49;PV4=0.0047,1.5e-06,5.4e-12,0.22 PL:DP:SP:GT:GQ 165,0,255:47:23:0/1:99 chr10 20534333 . A G 99 . DP=35;AF1=1;CI95=1,1;DP4=0,0,15,6;MQ=43 PL:DP:SP:GT:GQ 255,63,0:21:0:1/1:99 chr10 20568524 . T C 58.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=46 PL:DP:SP:GT:GQ 91,15,0:5:0:1/1:75 chr10 21120116 . A G 99 . DP=24;AF1=1;CI95=1,1;DP4=1,0,20,0;MQ=46;PV4=1,0.24,0.15,1 PL:DP:SP:GT:GQ 138,31,0:21:0:1/1:99 chr10 21141469 . T C 45 . DP=11;AF1=1;CI95=1,1;DP4=0,0,7,1;MQ=50 PL:DP:SP:GT:GQ 78,24,0:8:0:1/1:96 chr10 21176945 . G A 9.53 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 chr10 21178780 . A G 43 . DP=15;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,5,0;MQ=48;PV4=0.29,0.3,0.081,1 PL:DP:SP:GT:GQ 73,0,33:7:0:0/1:36 chr10 21414892 . C G 42 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=2,14,0,9;MQ=49;PV4=0.52,7.5e-12,0.027,1 PL:DP:SP:GT:GQ 72,0,255:25:3:0/1:75 chr10 22171185 . A C 6.98 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=3,1,3,0;MQ=48;PV4=1,0.35,1,0.33 PL:DP:SP:GT:GQ 36,0,62:7:0:0/1:39 chr10 22830719 . G C 99 . DP=39;AF1=1;CI95=1,1;DP4=1,1,20,9;MQ=47;PV4=1,0.2,0.16,1 PL:DP:SP:GT:GQ 245,33,0:31:0:1/1:99 chr10 22898553 . T G 3.01 . DP=16;AF1=0.4997;CI95=0.5,0.5;DP4=7,0,3,0;MQ=49;PV4=1,0.19,0.035,0.38 PL:DP:SP:GT:GQ 30,0,119:10:0:0/1:33 chr10 24786291 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 chr10 24889901 . T G 62 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,13,0,10;MQ=49;PV4=1,4.2e-12,1.6e-05,0.3 PL:DP:SP:GT:GQ 92,0,230:23:0:0/1:95 chr10 25888180 . A G 36.5 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=50 PL:DP:SP:GT:GQ 69,12,0:4:0:1/1:72 chr10 25998967 . T G 12.3 . DP=4;AF1=0.501;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,1,0.019,1 PL:DP:SP:GT:GQ 42,0,24:4:0:0/1:27 chr10 26357748 . G A 99 . DP=25;AF1=0.5163;CI95=0.5,1;DP4=0,4,6,7;MQ=46;PV4=0.24,1,0.00038,0.41 PL:DP:SP:GT:GQ 221,0,12:17:6:0/1:15 chr10 26463130 . C A 99 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=7,6,8,7;MQ=49;PV4=1,3.4e-16,0.024,1 PL:DP:SP:GT:GQ 161,0,255:28:0:0/1:99 chr10 26463507 . A G 9.31 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 chr10 26781388 . G A 27 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,6;MQ=49;PV4=1,3.5e-05,0.022,0.022 PL:DP:SP:GT:GQ 57,0,216:17:0:0/1:60 chr10 27009334 . A G 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,0,22;MQ=48 PL:DP:SP:GT:GQ 141,66,0:22:0:1/1:99 chr10 27405096 . A G 38 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=10,1,4,1;MQ=49;PV4=1,0.0018,0.0067,1 PL:DP:SP:GT:GQ 68,0,246:16:0:0/1:71 chr10 27409555 . G A 37.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 70,12,0:4:0:1/1:72 chr10 27423744 . T C 42 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=8,2,5,3;MQ=49;PV4=0.61,4.2e-09,1,0.33 PL:DP:SP:GT:GQ 72,0,255:18:2:0/1:75 chr10 27456003 . G A 17.1 . DP=24;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 chr10 27506854 . C T 10.2 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 chr10 27536428 . T C 99 . DP=14;AF1=1;CI95=1,1;DP4=0,0,8,6;MQ=32 PL:DP:SP:GT:GQ 255,42,0:14:0:1/1:99 chr10 27577568 . G A 33 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=2,0,6,0;MQ=49;PV4=1,0.048,0.31,1 PL:DP:SP:GT:GQ 63,0,40:8:0:0/1:43 chr10 27629880 . T C 3.41 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=36 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 chr10 27687775 . T C 20 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=2,2,4,0;MQ=49;PV4=0.43,0.0082,0.03,1 PL:DP:SP:GT:GQ 50,0,140:8:4:0/1:53 chr10 27687965 . A G 99 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=3,4,10,7;MQ=45;PV4=0.66,0.098,1.9e-07,0.41 PL:DP:SP:GT:GQ 255,0,174:24:2:0/1:99 chr10 27692099 . A G 65 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=9,0,7,0;MQ=48;PV4=1,2.1e-09,0.0012,1 PL:DP:SP:GT:GQ 95,0,207:16:0:0/1:98 chr10 27692371 . T G 33 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,5,1,4;MQ=49;PV4=1,0.0008,0.49,1 PL:DP:SP:GT:GQ 63,0,172:11:0:0/1:66 chr10 28223886 . A C 10.4 . DP=22;AF1=0.5005;CI95=0.5,0.5;DP4=3,0,4,0;MQ=49;PV4=1,1,0.14,1 PL:DP:SP:GT:GQ 40,0,27:7:0:0/1:30 chr10 28228865 . A G 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=12,6,4,5;MQ=48;PV4=0.41,0.027,6.4e-10,1 PL:DP:SP:GT:GQ 183,0,255:27:4:0/1:99 chr10 29760209 . C T 7.8 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,3;MQ=49;PV4=1,0.022,0.0025,1 PL:DP:SP:GT:GQ 37,0,161:9:0:0/1:40 chr10 29822032 . C T 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,11,5;MQ=48 PL:DP:SP:GT:GQ 195,48,0:16:0:1/1:99 chr10 29839787 . A G 99 . DP=44;AF1=1;CI95=1,1;DP4=0,1,19,17;MQ=48;PV4=0.49,1,0.28,1 PL:DP:SP:GT:GQ 255,91,0:37:0:1/1:99 chr10 29839864 . A C 99 . DP=31;AF1=1;CI95=1,1;DP4=0,0,17,10;MQ=48 PL:DP:SP:GT:GQ 255,81,0:27:0:1/1:99 chr10 29921156 . T C 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 chr10 30611459 . C A 33 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=5,5,0,8;MQ=49;PV4=0.036,0.0066,0.015,1 PL:DP:SP:GT:GQ 63,0,233:18:14:0/1:66 chr10 30669878 . G C 37 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=40;PV4=1,0.15,1,1 PL:DP:SP:GT:GQ 67,0,49:4:0:0/1:52 chr10 30749895 . G A 62.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=46 PL:DP:SP:GT:GQ 95,12,0:4:0:1/1:72 chr10 30993448 . G A 58.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=47 PL:DP:SP:GT:GQ 91,15,0:5:0:1/1:75 chr10 31005822 . C T 76.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=43 PL:DP:SP:GT:GQ 109,12,0:4:0:1/1:72 chr10 31134557 . T C 43.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 76,12,0:4:0:1/1:72 chr10 31803516 . G A 10.2 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 chr10 32103171 . G A,C 4 . DP=15;AF1=0.6241;CI95=0.5,1;DP4=1,0,5,0;MQ=49;PV4=1,1,0.25,1 PL:DP:SP:GT:GQ 39,8,23,12,0,23:6:0:0/1:6 chr10 33552696 . A G 99 . DP=54;AF1=1;CI95=1,1;DP4=1,0,35,10;MQ=49;PV4=1,0.012,0.36,1 PL:DP:SP:GT:GQ 192,106,0:46:0:1/1:99 chr10 34620220 . C T 99 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=42 PL:DP:SP:GT:GQ 171,24,0:8:0:1/1:96 chr10 34688287 . G A 99 . DP=40;AF1=1;CI95=1,1;DP4=0,1,20,14;MQ=47;PV4=0.43,1,0.14,1 PL:DP:SP:GT:GQ 255,88,0:35:0:1/1:99 chr10 35805284 . A C 61.3 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=47 PL:DP:SP:GT:GQ 94,15,0:5:0:1/1:75 chr10 38246545 . A G 52 . DP=21;AF1=0.5005;CI95=0.5,0.5;DP4=0,2,0,10;MQ=48;PV4=1,0.059,1,1 PL:DP:SP:GT:GQ 82,0,27:12:0:0/1:30 chr10 38344124 . C G 48 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=2,6,0,7;MQ=42;PV4=0.47,1,8.5e-05,0.45 PL:DP:SP:GT:GQ 78,0,130:15:3:0/1:81 chr10 38599101 . CTT CTTT 44.5 . INDEL;DP=9;AF1=0.505;CI95=0.5,0.5;DP4=1,0,2,1;MQ=50;PV4=1,1,1,0.21 PL:DP:SP:GT:GQ 82,0,17:4:0:0/1:20 chr10 38934239 . A T 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,0,2;MQ=49;PV4=0.33,0.19,0.28,1 PL:DP:SP:GT:GQ 31,0,60:4:5:0/1:34 chr10 42384737 . C T 53 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=8,8,10,10;MQ=16;PV4=1,0.25,1,1 PL:DP:SP:GT:GQ 83,0,51:36:0:0/1:54 chr10 42394484 . T C 44 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=8,7,7,7;MQ=17;PV4=1,4.2e-07,1,1 PL:DP:SP:GT:GQ 74,0,74:29:0:0/1:74 chr10 42396883 . A C 63.5 . DP=79;AF1=1;CI95=0.5,1;DP4=0,1,6,4;MQ=33;PV4=0.45,0.073,0.095,1 PL:DP:SP:GT:GQ 95,7,0:11:0:1/1:57 chr10 43089965 . G A 38 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=46 PL:DP:SP:GT:GQ 70,9,0:3:0:1/1:63 chr10 43209943 . G A 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 chr10 43606687 . A G 99 . DP=48;AF1=1;CI95=1,1;DP4=1,1,11,14;MQ=46;PV4=1,1,0.029,1 PL:DP:SP:GT:GQ 255,28,0:27:0:1/1:99 chr10 43617515 . T C 20 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=1,17,0,5;MQ=49;PV4=1,0.085,1.1e-05,0.25 PL:DP:SP:GT:GQ 50,0,234:23:0:0/1:53 chr10 43694394 . A C 24 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=7,2,5,0;MQ=49;PV4=0.51,0.42,0.032,0.44 PL:DP:SP:GT:GQ 54,0,128:14:3:0/1:57 chr10 43883342 . T A 99 . DP=16;AF1=1;CI95=1,1;DP4=0,0,1,12;MQ=48 PL:DP:SP:GT:GQ 137,39,0:13:0:1/1:99 chr10 44104137 . G T 20 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=4,5,5,0;MQ=49;PV4=0.086,0.098,0.029,0.37 PL:DP:SP:GT:GQ 50,0,182:14:11:0/1:53 chr10 45357413 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 chr10 45423282 . C G 22 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=48;PV4=1,0.0035,0.047,1 PL:DP:SP:GT:GQ 52,0,134:7:0:0/1:55 chr10 45622885 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 chr10 45799379 . TG TGGG 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 chr10 45924023 . G A 80 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=43 PL:DP:SP:GT:GQ 112,9,0:3:0:1/1:63 chr10 46998795 . A G 65 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=5,0,7,0;MQ=48;PV4=1,0.0058,0.26,0.15 PL:DP:SP:GT:GQ 95,0,134:12:0:0/1:98 chr10 46998894 . G A 99 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,21;MQ=46;PV4=1,7.8e-10,0.0016,0.15 PL:DP:SP:GT:GQ 153,0,112:26:0:0/1:99 chr10 46999465 . A G 34 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,7;MQ=49;PV4=1,0.0044,0.081,0.47 PL:DP:SP:GT:GQ 64,0,100:11:0:0/1:67 chr10 46999591 . CATGAGGGAG CATGAGGGAGATGAGGGAG 99 . INDEL;DP=25;AF1=1;CI95=1,1;DP4=0,0,6,6;MQ=50 PL:DP:SP:GT:GQ 255,36,0:12:0:1/1:99 chr10 46999604 . A G 12.3 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=5,0,4,0;MQ=49;PV4=1,0.11,0.16,1 PL:DP:SP:GT:GQ 42,0,85:9:0:0/1:45 chr10 46999747 . T C 80 . DP=66;AF1=0.5;CI95=0.5,0.5;DP4=10,11,3,13;MQ=49;PV4=0.091,1.1e-09,0.0043,1 PL:DP:SP:GT:GQ 110,0,255:37:10:0/1:99 chr10 47000004 . T C 99 . DP=31;AF1=1;CI95=0.5,1;DP4=2,1,7,11;MQ=49;PV4=0.55,1,0.14,1 PL:DP:SP:GT:GQ 177,4,0:21:3:1/1:45 chr10 47087608 . T C 70.1 . DP=37;AF1=0.9966;CI95=0.5,1;DP4=0,1,1,7;MQ=48;PV4=1,0.29,0.18,1 PL:DP:SP:GT:GQ 99,1,0:9:0:1/1:23 chr10 47087680 . C T 99 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=6,8,8,9;MQ=47;PV4=1,4.2e-08,6.6e-07,1 PL:DP:SP:GT:GQ 223,0,255:31:0:0/1:99 chr10 47087731 . C T 99 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=4,8,17,10;MQ=49;PV4=0.16,2.6e-12,0.046,0.084 PL:DP:SP:GT:GQ 146,0,255:39:8:0/1:99 chr10 47728608 . T C 43 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=5,2,2,2;MQ=32;PV4=0.58,1,1,1 PL:DP:SP:GT:GQ 73,0,67:11:2:0/1:69 chr10 48386110 . T C 68 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,8;MQ=48;PV4=1,0.027,0.00024,1 PL:DP:SP:GT:GQ 98,0,150:15:0:0/1:99 chr10 48414570 . A G 81 . DP=23;AF1=0.5003;CI95=0.5,0.5;DP4=1,1,0,18;MQ=47;PV4=0.1,0.00023,0.0076,1 PL:DP:SP:GT:GQ 111,0,29:20:0:0/1:32 chr10 49661341 . A G 85 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=6,3,4,4;MQ=49;PV4=0.64,0.00054,0.0059,1 PL:DP:SP:GT:GQ 115,0,249:17:2:0/1:99 chr10 50227785 . T C 28.5 . DP=29;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 61,12,0:4:0:1/1:72 chr10 50227927 . C A 22.5 . DP=9;AF1=1;CI95=0.5,1;DP4=0,1,0,6;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 54,7,0:7:0:1/1:57 chr10 50691360 . T C 12.2 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 44,9,0:3:0:1/1:63 chr10 50724016 . C T 7.59 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 chr10 50820345 . C A 79.8 . DP=10;AF1=0.95;CI95=0.5,1;DP4=0,1,8,0;MQ=47;PV4=0.11,1,0.13,1 PL:DP:SP:GT:GQ 108,0,0:9:0:1/1:10 chr10 50856652 . G A 43 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,7,1,2;MQ=47;PV4=0.3,0.088,8.8e-05,1 PL:DP:SP:GT:GQ 73,0,173:10:0:0/1:76 chr10 50902684 . C T 99 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,15;MQ=47;PV4=1,0.017,0.038,1 PL:DP:SP:GT:GQ 138,0,126:22:0:0/1:99 chr10 50944009 . T C 22 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,0;MQ=47;PV4=1,0.22,0.29,0.17 PL:DP:SP:GT:GQ 52,0,41:3:0:0/1:44 chr10 51532367 . A G 99 . DP=20;AF1=1;CI95=1,1;DP4=0,0,4,10;MQ=29 PL:DP:SP:GT:GQ 164,42,0:14:0:1/1:99 chr10 51549496 . T C 94 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=8,0,11,1;MQ=48;PV4=1,8.6e-08,8.3e-08,1 PL:DP:SP:GT:GQ 124,0,180:20:0:0/1:99 chr10 51549545 . G T 68 . DP=31;AF1=1;CI95=1,1;DP4=1,0,14,0;MQ=49;PV4=1,1,0.22,1 PL:DP:SP:GT:GQ 101,28,0:15:0:1/1:99 chr10 52390836 . A G 99 . DP=8;AF1=1;CI95=1,1;DP4=0,0,1,7;MQ=46 PL:DP:SP:GT:GQ 150,24,0:8:0:1/1:96 chr10 52419433 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 chr10 52576068 . G A 77 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=0,15,1,10;MQ=49;PV4=0.42,4.3e-15,0.01,0.43 PL:DP:SP:GT:GQ 107,0,237:26:0:0/1:99 chr10 53457421 . A G 3.54 . DP=18;AF1=0.4998;CI95=0.5,0.5;DP4=5,0,3,0;MQ=50;PV4=1,0.059,0.11,0.15 PL:DP:SP:GT:GQ 31,0,80:8:0:0/1:34 chr10 54148888 . C A 28 . DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=34 PL:DP:SP:GT:GQ 61,24,0:8:0:1/1:96 chr10 54528266 . G C 99 . DP=19;AF1=1;CI95=1,1;DP4=0,0,1,9;MQ=45 PL:DP:SP:GT:GQ 158,30,0:10:0:1/1:99 chr10 54528298 . G C 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,0,16;MQ=45 PL:DP:SP:GT:GQ 159,48,0:16:0:1/1:99 chr10 54528353 . C G 66.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=47 PL:DP:SP:GT:GQ 99,18,0:6:0:1/1:90 chr10 55719652 . C T 55.1 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=49 PL:DP:SP:GT:GQ 88,21,0:7:0:1/1:84 chr10 55779909 . G C 52 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=5,0,11,0;MQ=49;PV4=1,0.023,0.19,1 PL:DP:SP:GT:GQ 82,0,73:16:0:0/1:75 chr10 58118630 . T C 29.5 . DP=49;AF1=0.8277;CI95=0.5,1;DP4=0,1,1,3;MQ=49;PV4=1,1,0.25,1 PL:DP:SP:GT:GQ 58,0,1:5:0:1/1:5 chr10 58119976 . G A 51.3 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=48 PL:DP:SP:GT:GQ 84,15,0:5:0:1/1:75 chr10 59958956 . C A 3.02 . DP=4;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,0.037,0.33,1 PL:DP:SP:GT:GQ 30,0,27:3:0:0/1:28 chr10 60996453 . G A 37.1 . DP=15;AF1=1;CI95=0.5,1;DP4=0,1,0,6;MQ=49;PV4=1,1,0.47,1 PL:DP:SP:GT:GQ 68,5,0:7:0:1/1:46 chr10 61005244 . G C 99 . DP=28;AF1=1;CI95=1,1;DP4=0,0,3,16;MQ=48 PL:DP:SP:GT:GQ 181,57,0:19:0:1/1:99 chr10 61083689 . CAG CAGTTAG 38.5 . INDEL;DP=24;AF1=0.5064;CI95=0.5,0.5;DP4=2,0,17,0;MQ=50;PV4=1,0.00017,1,1 PL:DP:SP:GT:GQ 76,0,16:19:0:0/1:19 chr10 61083690 . AG AGTTGG 99 . INDEL;DP=25;AF1=0.505;CI95=0.5,0.5;DP4=2,0,19,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 228,0,17:21:0:0/1:20 chr10 61122268 . T TTA 99 . INDEL;DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=50 PL:DP:SP:GT:GQ 176,15,0:5:0:1/1:75 chr10 61311416 . TAAA TAA 93.6 . INDEL;DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=50 PL:DP:SP:GT:GQ 134,18,0:6:0:1/1:90 chr10 61552878 . G T 3.01 . DP=13;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,2;MQ=48;PV4=1,0.16,0.38,1 PL:DP:SP:GT:GQ 30,0,57:4:0:0/1:33 chr10 61802577 . TCC TCCC 77.7 . INDEL;DP=19;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=50 PL:DP:SP:GT:GQ 118,15,0:5:0:1/1:75 chr10 61815335 . C A 50.1 . DP=27;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=48 PL:DP:SP:GT:GQ 83,18,0:6:0:1/1:90 chr10 61819049 . T G 99 . DP=31;AF1=1;CI95=1,1;DP4=0,0,28,0;MQ=46 PL:DP:SP:GT:GQ 176,84,0:28:0:1/1:99 chr10 62553763 . A G 42.1 . DP=9;AF1=0.5163;CI95=0.5,1;DP4=0,1,0,6;MQ=47;PV4=1,0.1,1,1 PL:DP:SP:GT:GQ 72,0,12:7:0:0/1:15 chr10 63995983 . C T 60.1 . DP=9;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=48 PL:DP:SP:GT:GQ 93,21,0:7:0:1/1:84 chr10 64005711 . C T 15.9 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 chr10 64415184 . A G 99 . DP=35;AF1=1;CI95=1,1;DP4=0,0,27,6;MQ=48 PL:DP:SP:GT:GQ 212,99,0:33:0:1/1:99 chr10 64573771 . C T 99 . DP=24;AF1=1;CI95=1,1;DP4=0,1,1,18;MQ=44;PV4=1,1,4.7e-11,1 PL:DP:SP:GT:GQ 245,28,0:20:0:1/1:99 chr10 64967445 . A T 99 . DP=55;AF1=1;CI95=1,1;DP4=0,0,24,22;MQ=49 PL:DP:SP:GT:GQ 255,138,0:46:0:1/1:99 chr10 69583206 . G A 3.55 . DP=5;AF1=0.5014;CI95=0.5,0.5;DP4=0,1,0,3;MQ=50;PV4=1,0,1,1 PL:DP:SP:GT:GQ 31,0,22:4:0:0/1:24 chr10 69934467 . A G 40 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=50 PL:DP:SP:GT:GQ 73,24,0:8:0:1/1:96 chr10 70051928 . A G 99 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=15,8,7,10;MQ=47;PV4=0.2,0.2,5e-15,1 PL:DP:SP:GT:GQ 255,0,255:40:7:0/1:99 chr10 70143774 . C T 28 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 60,9,0:3:0:1/1:63 chr10 70405855 . A G 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,4,6;MQ=49 PL:DP:SP:GT:GQ 148,30,0:10:0:1/1:99 chr10 70502288 . G A 99 . DP=64;AF1=1;CI95=1,1;DP4=2,1,21,33;MQ=46;PV4=0.56,0.0047,0.0012,1 PL:DP:SP:GT:GQ 255,76,0:57:3:1/1:99 chr10 70525591 . G A 12.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=46;PV4=1,0.23,0.0022,1 PL:DP:SP:GT:GQ 42,0,62:4:0:0/1:45 chr10 70641860 . T C 9.52 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=5,11,2,3;MQ=50;PV4=1,6.4e-05,0.0021,1 PL:DP:SP:GT:GQ 39,0,255:21:0:0/1:42 chr10 70646193 . C T 16.1 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=0,13,5,0;MQ=49;PV4=0.00012,0.0016,1.1e-05,1 PL:DP:SP:GT:GQ 46,0,217:18:39:0/1:49 chr10 70694171 . T A 14.2 . DP=8;AF1=0.5003;CI95=0.5,0.5;DP4=0,2,0,3;MQ=44;PV4=1,0.42,0.096,1 PL:DP:SP:GT:GQ 44,0,29:5:0:0/1:32 chr10 70725128 . A G 88 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=5,5,5,3;MQ=49;PV4=0.66,0.00029,0.0018,0.47 PL:DP:SP:GT:GQ 118,0,255:18:2:0/1:99 chr10 70748716 . TG TGACAG 12.7 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 chr10 70928380 . A C 3.54 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=3,1,0,2;MQ=49;PV4=0.4,0.033,0.004,0.35 PL:DP:SP:GT:GQ 31,0,140:6:4:0/1:34 chr10 70992664 . C T 64 . DP=24;AF1=1;CI95=1,1;DP4=0,0,0,17;MQ=50 PL:DP:SP:GT:GQ 97,51,0:17:0:1/1:99 chr10 70992912 . A T 99 . DP=48;AF1=1;CI95=1,1;DP4=1,0,9,28;MQ=47;PV4=0.26,1,0.11,1 PL:DP:SP:GT:GQ 255,96,0:38:0:1/1:99 chr10 70992949 . T A 93 . DP=35;AF1=1;CI95=1,1;DP4=0,1,0,29;MQ=48;PV4=1,0.13,0.2,1 PL:DP:SP:GT:GQ 126,61,0:30:0:1/1:99 chr10 71016947 . C G 13.2 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,4;MQ=49;PV4=1,1.9e-06,0.25,0.28 PL:DP:SP:GT:GQ 43,0,133:8:0:0/1:46 chr10 71018660 . T C 53 . DP=21;AF1=0.502;CI95=0.5,0.5;DP4=1,1,0,6;MQ=47;PV4=0.25,1,0.35,1 PL:DP:SP:GT:GQ 83,0,21:8:0:0/1:24 chr10 71144702 . G A 99 . DP=24;AF1=1;CI95=1,1;DP4=0,0,2,9;MQ=48 PL:DP:SP:GT:GQ 140,33,0:11:0:1/1:99 chr10 71392557 . C T 7.8 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,3;MQ=48;PV4=1,0.11,0.01,0.17 PL:DP:SP:GT:GQ 37,0,142:8:0:0/1:40 chr10 71969062 . G A 24 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 56,9,0:3:0:1/1:63 chr10 72195439 . T C 22 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,2,2,1;MQ=49;PV4=1,0.016,0.073,1 PL:DP:SP:GT:GQ 52,0,147:7:0:0/1:55 chr10 72297567 . G A 45 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,2,5,0;MQ=48;PV4=0.048,0.17,0.031,1 PL:DP:SP:GT:GQ 75,0,40:7:13:0/1:43 chr10 72357713 . C T 63 . DP=5;AF1=0.501;CI95=0.5,0.5;DP4=1,0,4,0;MQ=43;PV4=1,0.34,0.2,0.41 PL:DP:SP:GT:GQ 93,0,24:5:0:0/1:27 chr10 72496375 . A G 13.2 . DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 chr10 72500863 . C G 21.1 . DP=31;AF1=0.5102;CI95=0.5,0.5;DP4=0,1,3,0;MQ=48;PV4=0.25,0.43,0.21,1 PL:DP:SP:GT:GQ 51,0,14:4:0:0/1:17 chr10 72619205 . C T 75.1 . DP=28;AF1=0.508;CI95=0.5,0.5;DP4=1,1,6,3;MQ=49;PV4=1,0.15,0.22,1 PL:DP:SP:GT:GQ 105,0,15:11:0:0/1:18 chr10 72633458 . C T 59 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,12;MQ=49;PV4=1,1.4e-09,0.053,1 PL:DP:SP:GT:GQ 89,0,184:20:0:0/1:92 chr10 73104056 . A G 93.8 . DP=32;AF1=1;CI95=0.5,1;DP4=0,1,1,14;MQ=47;PV4=1,0.0074,1,0.47 PL:DP:SP:GT:GQ 126,10,0:16:0:1/1:60 chr10 73121913 . A G 99 . DP=40;AF1=1;CI95=1,1;DP4=1,1,13,21;MQ=43;PV4=1,1,0.0024,1 PL:DP:SP:GT:GQ 255,63,0:36:0:1/1:99 chr10 73520632 . A C 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,3,6;MQ=48 PL:DP:SP:GT:GQ 137,27,0:9:0:1/1:99 chr10 73578882 . T C 63 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=0,18,0,14;MQ=49;PV4=1,3.4e-21,0.00013,0.35 PL:DP:SP:GT:GQ 93,0,243:32:0:0/1:96 chr10 73579501 . AG AGGCGGG 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,40:2:0:0/1:42 chr10 73579979 . G A 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=15,0,13,0;MQ=47;PV4=1,0.01,1.2e-20,1 PL:DP:SP:GT:GQ 184,0,230:28:0:0/1:99 chr10 74813116 . A G 19.1 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,2,3,1;MQ=46;PV4=0.4,0.025,0.12,1 PL:DP:SP:GT:GQ 49,0,53:6:4:0/1:51 chr10 75186107 . C T 7.8 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=2,2,0,3;MQ=49;PV4=0.43,1,0.13,1 PL:DP:SP:GT:GQ 37,0,49:7:4:0/1:40 chr10 75187502 . G A 44 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=1,7,4,2;MQ=48;PV4=0.091,0.089,0.0045,1 PL:DP:SP:GT:GQ 74,0,144:14:10:0/1:77 chr10 75476882 . A G 3.04 . DP=6;AF1=0.5048;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0,0.23,1 PL:DP:SP:GT:GQ 30,0,17:3:0:0/1:20 chr10 75526651 . T C 28 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,5;MQ=48;PV4=0.37,0.00095,1,1 PL:DP:SP:GT:GQ 58,0,77:8:0:0/1:61 chr10 75574848 . G C 15.1 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,2,2,0;MQ=48;PV4=0.33,0.16,0.065,1 PL:DP:SP:GT:GQ 45,0,68:4:5:0/1:48 chr10 75607168 . T C 11.4 . DP=25;AF1=0.508;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.2,0.21,1 PL:DP:SP:GT:GQ 41,0,15:4:0:0/1:18 chr10 75607643 . C CT 44.4 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 84,9,0:3:0:1/1:63 chr10 75607696 . CAA CA 99 . INDEL;DP=21;AF1=1;CI95=1,1;DP4=0,0,20,0;MQ=50 PL:DP:SP:GT:GQ 166,60,0:20:0:1/1:99 chr10 75673101 . T C 53.3 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=49 PL:DP:SP:GT:GQ 86,15,0:5:0:1/1:75 chr10 75842152 . G A 74.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=46 PL:DP:SP:GT:GQ 107,15,0:5:0:1/1:75 chr10 75843100 . T A 31.1 . DP=15;AF1=0.9966;CI95=0.5,1;DP4=1,0,8,0;MQ=49;PV4=1,0.081,1,1 PL:DP:SP:GT:GQ 60,1,0:9:0:1/1:23 chr10 75863750 . C T 25 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,6;MQ=49;PV4=1,4.8e-05,0.0015,1 PL:DP:SP:GT:GQ 55,0,201:15:0:0/1:58 chr10 76729901 . T A 6.98 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,3;MQ=47;PV4=1,0.23,0.41,1 PL:DP:SP:GT:GQ 36,0,50:6:0:0/1:39 chr10 76854564 . C T 50 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=3,4,3,2;MQ=49;PV4=1,9.5e-05,0.038,1 PL:DP:SP:GT:GQ 80,0,242:12:0:0/1:83 chr10 76855326 . A G 3.54 . DP=15;AF1=0.4998;CI95=0.5,0.5;DP4=6,0,2,1;MQ=49;PV4=0.33,5.3e-08,0.085,0.39 PL:DP:SP:GT:GQ 31,0,176:9:0:0/1:34 chr10 76855412 . G A 99 . DP=56;AF1=0.5;CI95=0.5,0.5;DP4=10,27,4,11;MQ=48;PV4=1,1.3e-07,5.9e-28,0.41 PL:DP:SP:GT:GQ 232,0,255:52:0:0/1:99 chr10 76857716 . A G 39 . DP=5;AF1=0.5001;CI95=0.5,0.5;DP4=0,2,0,3;MQ=46;PV4=1,1,0.077,0.22 PL:DP:SP:GT:GQ 69,0,35:5:0:0/1:38 chr10 77454739 . A G 15.1 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 47,9,0:3:0:1/1:63 chr10 78649399 . C T 99 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,7;MQ=47;PV4=1,1,5.6e-18,1 PL:DP:SP:GT:GQ 145,0,181:16:0:0/1:99 chr10 79541428 . C T 26 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 chr10 79552151 . T C 59 . DP=15;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=50 PL:DP:SP:GT:GQ 92,30,0:10:0:1/1:99 chr10 79553673 . T C 26.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=42 PL:DP:SP:GT:GQ 58,6,0:2:0:1/1:49 chr10 79584178 . G C 97.3 . DP=36;AF1=1;CI95=0.5,1;DP4=0,1,2,8;MQ=48;PV4=1,1,0.13,1 PL:DP:SP:GT:GQ 130,15,0:11:0:1/1:75 chr10 79590685 . C T 29.3 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 62,15,0:5:0:1/1:75 chr10 79614189 . A G 24.8 . DP=30;AF1=0.6243;CI95=0.5,1;DP4=0,1,1,2;MQ=49;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 54,0,4:4:0:0/1:6 chr10 79616642 . C T 12.3 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=5,0,0,3;MQ=48;PV4=0.018,0.00046,0.0046,1 PL:DP:SP:GT:GQ 42,0,153:8:17:0/1:45 chr10 79628875 . A G 27 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 59,9,0:3:0:1/1:63 chr10 80364929 . G A 8.65 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 chr10 81053475 . G A 39 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,8;MQ=49;PV4=1,1.6e-06,3e-05,0.46 PL:DP:SP:GT:GQ 69,0,222:20:0:0/1:72 chr10 81267889 . A C 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 chr10 81274706 . G A 30.1 . DP=6;AF1=0.505;CI95=0.5,0.5;DP4=1,0,3,0;MQ=44;PV4=1,0.47,0.23,1 PL:DP:SP:GT:GQ 60,0,17:4:0:0/1:20 chr10 81274984 . A C 31.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 64,12,0:4:0:1/1:72 chr10 81318820 . G A 30 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,5;MQ=49;PV4=1,0.034,0.00085,1 PL:DP:SP:GT:GQ 60,0,141:12:0:0/1:63 chr10 81701722 . T C 99 . DP=41;AF1=1;CI95=1,1;DP4=0,1,3,26;MQ=46;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 230,64,0:30:0:1/1:99 chr10 81841870 . T C 10.4 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=5,0,4,0;MQ=48;PV4=1,1,0.045,1 PL:DP:SP:GT:GQ 40,0,64:9:0:0/1:43 chr10 82040052 . A G 21 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=49 PL:DP:SP:GT:GQ 53,9,0:3:0:1/1:63 chr10 82043576 . G A 99 . DP=22;AF1=1;CI95=1,1;DP4=0,0,20,0;MQ=45 PL:DP:SP:GT:GQ 160,60,0:20:0:1/1:99 chr10 82182296 . G A 18.5 . DP=30;AF1=0.8277;CI95=0.5,1;DP4=0,1,0,5;MQ=49;PV4=1,0.38,0.26,1 PL:DP:SP:GT:GQ 47,0,1:6:0:1/1:5 chr10 84042755 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 chr10 85974381 . A G 84 . DP=34;AF1=1;CI95=1,1;DP4=0,0,0,31;MQ=49 PL:DP:SP:GT:GQ 117,93,0:31:0:1/1:99 chr10 85992511 . T C 99 . DP=16;AF1=1;CI95=1,1;DP4=0,0,9,6;MQ=46 PL:DP:SP:GT:GQ 255,45,0:15:0:1/1:99 chr10 85993836 . A G 99 . DP=30;AF1=1;CI95=1,1;DP4=1,1,14,9;MQ=46;PV4=1,1,0.016,1 PL:DP:SP:GT:GQ 255,26,0:25:0:1/1:99 chr10 85994142 . A G,C 50.5 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=47 PL:DP:SP:GT:GQ 98,27,78,15,0,78:5:0:1/1:72 chr10 86004873 . T C 33 . DP=18;AF1=0.5008;CI95=0.5,0.5;DP4=1,0,2,3;MQ=49;PV4=1,0.0028,0.21,1 PL:DP:SP:GT:GQ 63,0,25:6:0:0/1:28 chr10 86012713 . C T 99 . DP=28;AF1=1;CI95=1,1;DP4=0,0,4,19;MQ=45 PL:DP:SP:GT:GQ 255,69,0:23:0:1/1:99 chr10 86185654 . T G 31.5 . DP=38;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=46 PL:DP:SP:GT:GQ 64,12,0:4:0:1/1:72 chr10 87482991 . C T 4.77 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.21,0.072,1 PL:DP:SP:GT:GQ 33,0,59:4:0:0/1:36 chr10 88220866 . C T 4.77 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 chr10 88233628 . C G 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=47 PL:DP:SP:GT:GQ 150,42,0:14:0:1/1:99 chr10 88256943 . C T 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,4,5;MQ=46 PL:DP:SP:GT:GQ 179,27,0:9:0:1/1:99 chr10 88677115 . T G 25 . DP=22;AF1=0.5016;CI95=0.5,0.5;DP4=0,2,0,6;MQ=49;PV4=1,0.44,0.053,1 PL:DP:SP:GT:GQ 55,0,22:8:0:0/1:25 chr10 88761481 . T C 36 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,5;MQ=38;PV4=1,0.066,1,0.38 PL:DP:SP:GT:GQ 66,0,112:12:0:0/1:69 chr10 88768253 . A G 99 . DP=44;AF1=1;CI95=1,1;DP4=0,0,27,13;MQ=20 PL:DP:SP:GT:GQ 199,120,0:40:0:1/1:99 chr10 88768657 . C T 99 . DP=33;AF1=1;CI95=1,1;DP4=0,0,12,12;MQ=45 PL:DP:SP:GT:GQ 255,72,0:24:0:1/1:99 chr10 89469083 . CATATATATATATATATATA CATATATATATATATA 7.36 . INDEL;DP=18;AF1=0.501;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,24:2:0:0/1:27 chr10 90356598 . A G 88.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=45 PL:DP:SP:GT:GQ 121,12,0:4:0:1/1:72 chr10 90438327 . T G 3.01 . DP=32;AF1=0.4997;CI95=0.5,0.5;DP4=9,8,0,5;MQ=49;PV4=0.054,0.02,1.9e-06,0.37 PL:DP:SP:GT:GQ 30,0,255:22:13:0/1:33 chr10 90545972 . T G 84.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,2;MQ=48 PL:DP:SP:GT:GQ 117,18,0:6:0:1/1:90 chr10 90546007 . A G 39.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=48 PL:DP:SP:GT:GQ 72,12,0:4:0:1/1:72 chr10 90585819 . G A 94 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=12,5,9,7;MQ=50;PV4=0.48,5.3e-17,0.037,0.38 PL:DP:SP:GT:GQ 124,0,255:33:3:0/1:99 chr10 90767395 . G C 99 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=44 PL:DP:SP:GT:GQ 140,15,0:5:0:1/1:75 chr10 90771829 . T C 57.5 . DP=29;AF1=0.8277;CI95=0.5,1;DP4=0,1,1,5;MQ=48;PV4=1,1,0.12,0.41 PL:DP:SP:GT:GQ 86,0,1:7:0:1/1:5 chr10 91066460 . T A 95 . DP=38;AF1=1;CI95=1,1;DP4=0,0,5,4;MQ=49 PL:DP:SP:GT:GQ 128,27,0:9:0:1/1:99 chr10 91099943 . C G 19 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 chr10 91137826 . T C 99 . DP=17;AF1=1;CI95=0.5,1;DP4=0,1,12,0;MQ=45;PV4=0.077,1,0.067,1 PL:DP:SP:GT:GQ 173,13,0:13:0:1/1:65 chr10 91162182 . C T 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,1,16;MQ=49 PL:DP:SP:GT:GQ 147,51,0:17:0:1/1:99 chr10 91178000 . C T 99 . DP=42;AF1=1;CI95=1,1;DP4=0,0,2,37;MQ=47 PL:DP:SP:GT:GQ 209,117,0:39:0:1/1:99 chr10 91352966 . G A 99 . DP=20;AF1=1;CI95=1,1;DP4=0,0,6,8;MQ=49 PL:DP:SP:GT:GQ 158,42,0:14:0:1/1:99 chr10 91498127 . T C 99 . DP=28;AF1=1;CI95=1,1;DP4=0,1,8,17;MQ=47;PV4=1,1,0.05,1 PL:DP:SP:GT:GQ 255,56,0:26:0:1/1:99 chr10 91522605 . G C 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,1,9;MQ=45 PL:DP:SP:GT:GQ 181,30,0:10:0:1/1:99 chr10 91738755 . T C 62 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,4,1,4;MQ=48;PV4=1,3.8e-05,0.0033,1 PL:DP:SP:GT:GQ 92,0,210:11:0:0/1:95 chr10 93000211 . G A 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,13,0;MQ=45 PL:DP:SP:GT:GQ 161,39,0:13:0:1/1:99 chr10 93257936 . T G 4.13 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,0,4;MQ=49;PV4=0.33,0.12,1,0.46 PL:DP:SP:GT:GQ 32,0,40:6:0:0/1:34 chr10 93601285 . G C 31 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,2;MQ=47;PV4=1,0.11,0,0.17 PL:DP:SP:GT:GQ 61,0,112:5:0:0/1:64 chr10 93604827 . A G 8.44 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 chr10 93611176 . ATATG ATATGTATG 99 . INDEL;DP=9;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=50 PL:DP:SP:GT:GQ 202,21,0:7:0:1/1:84 chr10 93702377 . T G 38 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,6;MQ=48;PV4=1,1,0.0002,1 PL:DP:SP:GT:GQ 68,0,38:11:0:0/1:41 chr10 93778645 . T A 4.13 . DP=24;AF1=0.4998;CI95=0.5,0.5;DP4=11,3,0,4;MQ=49;PV4=0.011,0.002,0.0026,0.0032 PL:DP:SP:GT:GQ 32,0,255:18:19:0/1:35 chr10 93841227 . A G 99 . DP=21;AF1=0.501;CI95=0.5,0.5;DP4=1,1,4,11;MQ=44;PV4=0.51,0.082,0.0021,1 PL:DP:SP:GT:GQ 243,0,24:17:3:0/1:27 chr10 94594565 . G A 99 . DP=43;AF1=1;CI95=1,1;DP4=0,0,5,27;MQ=49 PL:DP:SP:GT:GQ 206,96,0:32:0:1/1:99 chr10 94688167 . C G 20 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,3,0,5;MQ=48;PV4=0.18,0.16,0.11,0.17 PL:DP:SP:GT:GQ 50,0,128:11:7:0/1:53 chr10 94695617 . C T 91 . DP=13;AF1=1;CI95=1,1;DP4=0,0,1,8;MQ=48 PL:DP:SP:GT:GQ 124,27,0:9:0:1/1:99 chr10 94757270 . C T 64 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,0,5,0;MQ=46;PV4=1,0.17,0.098,1 PL:DP:SP:GT:GQ 94,0,50:7:0:0/1:53 chr10 94816807 . GAAA GAAAA 39.5 . INDEL;DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,5;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 77,0,76:10:0:0/1:76 chr10 95043763 . G A 97 . DP=18;AF1=1;CI95=1,1;DP4=0,0,17,0;MQ=23 PL:DP:SP:GT:GQ 130,51,0:17:0:1/1:99 chr10 95072906 . T C 12.5 . DP=28;AF1=0.5263;CI95=0.5,1;DP4=0,1,3,0;MQ=49;PV4=0.25,0.44,0.22,1 PL:DP:SP:GT:GQ 42,0,10:4:0:0/1:13 chr10 95073046 . A G 66.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=45 PL:DP:SP:GT:GQ 99,15,0:5:0:1/1:75 chr10 95089312 . T C 99 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=45 PL:DP:SP:GT:GQ 133,15,0:5:0:1/1:75 chr10 95132905 . C T 18 . DP=24;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 chr10 95162113 . G C 36.8 . DP=17;AF1=0.95;CI95=0.5,1;DP4=0,2,0,11;MQ=49;PV4=1,0.37,0.3,1 PL:DP:SP:GT:GQ 65,0,0:13:0:1/1:10 chr10 95164040 . A G 66.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=46 PL:DP:SP:GT:GQ 99,15,0:5:0:1/1:75 chr10 95241999 . A C 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,0,16;MQ=45 PL:DP:SP:GT:GQ 177,48,0:16:0:1/1:99 chr10 95262981 . A G 99 . DP=30;AF1=1;CI95=1,1;DP4=0,0,13,12;MQ=49 PL:DP:SP:GT:GQ 214,75,0:25:0:1/1:99 chr10 95400773 . T G 25 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,4;MQ=49;PV4=1,0.11,0.019,0.18 PL:DP:SP:GT:GQ 55,0,77:8:0:0/1:58 chr10 95459817 . C T 57 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=6,0,5,3;MQ=50;PV4=0.21,2e-07,0.12,0.12 PL:DP:SP:GT:GQ 87,0,161:14:7:0/1:90 chr10 95557593 . T G 24 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=44 PL:DP:SP:GT:GQ 56,9,0:3:0:1/1:63 chr10 95641536 . A C 28 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=49 PL:DP:SP:GT:GQ 60,9,0:3:0:1/1:63 chr10 96044579 . A C 8.64 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=2,4,3,0;MQ=49;PV4=0.17,0.3,0.012,1 PL:DP:SP:GT:GQ 38,0,122:9:8:0/1:41 chr10 96100314 . A T,C 3.18 . DP=7;AF1=0.5428;CI95=0.5,1;DP4=0,1,0,3;MQ=46;PV4=1,1,0.0076,1 PL:DP:SP:GT:GQ 35,5,21,13,0,33:4:0:0/1:11 chr10 96271298 . A C 59.5 . DP=25;AF1=1;CI95=0.5,1;DP4=1,0,8,0;MQ=48;PV4=1,1,0.13,1 PL:DP:SP:GT:GQ 92,12,0:9:0:1/1:72 chr10 96313960 . A C 18.6 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 51,12,0:4:0:1/1:72 chr10 96827178 . T C 90 . DP=23;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=48 PL:DP:SP:GT:GQ 123,39,0:13:0:1/1:99 chr10 97096639 . A T 6.2 . DP=28;AF1=0.4999;CI95=0.5,0.5;DP4=2,11,4,0;MQ=49;PV4=0.0063,0.0046,0.029,1 PL:DP:SP:GT:GQ 35,0,255:17:22:0/1:38 chr10 97141523 . G A 99 . DP=36;AF1=1;CI95=1,1;DP4=1,0,3,28;MQ=49;PV4=0.13,0.27,0.28,1 PL:DP:SP:GT:GQ 163,73,0:32:0:1/1:99 chr10 97440328 . G A 12.3 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,5;MQ=49;PV4=1,0.13,0.36,1 PL:DP:SP:GT:GQ 42,0,110:11:0:0/1:45 chr10 97447373 . A T 87 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=1,9,1,6;MQ=48;PV4=1,0.0014,0.00063,0.24 PL:DP:SP:GT:GQ 117,0,224:17:0:0/1:99 chr10 97605057 . C G 99 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=14,1,9,1;MQ=48;PV4=1,0.00011,5.8e-11,0.24 PL:DP:SP:GT:GQ 182,0,255:25:0:0/1:99 chr10 97816749 . C G 39 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=7,2,0,7;MQ=49;PV4=0.0032,2.5e-05,0.00085,1 PL:DP:SP:GT:GQ 69,0,243:16:25:0/1:72 chr10 98082385 . A G 14.2 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=48;PV4=1,0.076,0.068,0.16 PL:DP:SP:GT:GQ 44,0,112:7:0:0/1:47 chr10 98084231 . A G 30.3 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 63,15,0:5:0:1/1:75 chr10 98092426 . G A 35 . DP=21;AF1=0.5002;CI95=0.5,0.5;DP4=0,2,0,4;MQ=45;PV4=1,1,0.033,1 PL:DP:SP:GT:GQ 65,0,31:6:0:0/1:34 chr10 98092427 . G A 39 . DP=22;AF1=0.5003;CI95=0.5,0.5;DP4=0,3,0,7;MQ=45;PV4=1,0.32,1,0.14 PL:DP:SP:GT:GQ 69,0,29:10:0:0/1:32 chr10 98144312 . G A 99 . DP=40;AF1=1;CI95=1,1;DP4=0,0,32,2;MQ=48 PL:DP:SP:GT:GQ 156,102,0:34:0:1/1:99 chr10 98240035 . A T 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=44 PL:DP:SP:GT:GQ 211,36,0:12:0:1/1:99 chr10 98281981 . A C 15.1 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,0,3,0;MQ=48;PV4=1,0.0039,0.22,0.12 PL:DP:SP:GT:GQ 45,0,38:4:0:0/1:40 chr10 98380115 . G C 5.46 . DP=23;AF1=0.4999;CI95=0.5,0.5;DP4=3,1,5,0;MQ=49;PV4=0.44,0.15,0.073,1 PL:DP:SP:GT:GQ 34,0,77:9:0:0/1:37 chr10 98380277 . C T 21 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=6,5,0,6;MQ=49;PV4=0.043,2e-05,0.0069,1 PL:DP:SP:GT:GQ 51,0,255:17:14:0/1:54 chr10 98380363 . A G 73 . DP=8;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=48 PL:DP:SP:GT:GQ 106,24,0:8:0:1/1:96 chr10 98410947 . A C 27 . DP=15;AF1=0.502;CI95=0.5,0.5;DP4=2,0,4,0;MQ=46;PV4=1,1,1,0.37 PL:DP:SP:GT:GQ 57,0,21:6:0:0/1:24 chr10 99019177 . A G 66 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=14,8,7,3;MQ=49;PV4=1,9e-09,7.6e-05,0.43 PL:DP:SP:GT:GQ 96,0,255:32:0:0/1:99 chr10 99422648 . A G 38 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=8,0,9,0;MQ=49;PV4=1,3.6e-05,0.22,1 PL:DP:SP:GT:GQ 68,0,178:17:0:0/1:71 chr10 99682981 . T C 55 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=7,3,6,0;MQ=49;PV4=0.25,6.6e-05,0.00081,1 PL:DP:SP:GT:GQ 85,0,255:16:6:0/1:88 chr10 99969568 . A G 99 . DP=64;AF1=1;CI95=1,1;DP4=0,1,28,22;MQ=50;PV4=0.45,0.0011,0.41,1 PL:DP:SP:GT:GQ 163,122,0:51:0:1/1:99 chr10 99991408 . A G 99 . DP=34;AF1=1;CI95=1,1;DP4=0,0,10,18;MQ=46 PL:DP:SP:GT:GQ 255,84,0:28:0:1/1:99 chr10 100144782 . C T 77 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=1,3,2,5;MQ=48;PV4=1,5.7e-07,0.051,1 PL:DP:SP:GT:GQ 107,0,146:11:0:0/1:99 chr10 100146895 . T C 36 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=8,0,5,0;MQ=49;PV4=1,9.2e-05,0.029,1 PL:DP:SP:GT:GQ 66,0,194:13:0:0/1:69 chr10 100147097 . G A 8.64 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,6;MQ=50;PV4=1,1.7e-07,1,1 PL:DP:SP:GT:GQ 38,0,212:16:0:0/1:41 chr10 100148176 . A G 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,5,10;MQ=48 PL:DP:SP:GT:GQ 232,45,0:15:0:1/1:99 chr10 100155110 . C A 20 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=2,4,0,5;MQ=48;PV4=0.45,0.11,1,1 PL:DP:SP:GT:GQ 50,0,136:11:3:0/1:53 chr10 100167396 . G A 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,6,14;MQ=48 PL:DP:SP:GT:GQ 225,60,0:20:0:1/1:99 chr10 100183774 . A G 25.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 57,6,0:2:0:1/1:49 chr10 100219314 . G A 58 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=11,6,8,1;MQ=49;PV4=0.36,8.1e-07,1.1e-10,0.43 PL:DP:SP:GT:GQ 88,0,255:26:4:0/1:91 chr10 101466569 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 chr10 101544447 . A T 99 . DP=61;AF1=1;CI95=1,1;DP4=0,0,6,7;MQ=48 PL:DP:SP:GT:GQ 176,39,0:13:0:1/1:99 chr10 101591944 . T C 89 . DP=16;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=48 PL:DP:SP:GT:GQ 122,36,0:12:0:1/1:99 chr10 101596043 . A C 5.46 . DP=35;AF1=0.4999;CI95=0.5,0.5;DP4=7,9,0,5;MQ=49;PV4=0.12,0.0062,2.8e-05,1 PL:DP:SP:GT:GQ 34,0,255:21:9:0/1:37 chr10 101639905 . T A 30 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,7;MQ=49;PV4=1,0.089,0.0044,0.26 PL:DP:SP:GT:GQ 60,0,81:14:0:0/1:63 chr10 101645498 . T C 99 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=5,4,4,1;MQ=48;PV4=0.58,0.48,0,1 PL:DP:SP:GT:GQ 138,0,255:14:2:0/1:99 chr10 101654696 . T C 99 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=8,3,13,1;MQ=48;PV4=0.29,1.4e-06,4.8e-09,1 PL:DP:SP:GT:GQ 142,0,255:25:5:0/1:99 chr10 101874506 . T C 4.13 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,1,2;MQ=47;PV4=1,0.15,1,1 PL:DP:SP:GT:GQ 32,0,34:5:0:0/1:33 chr10 101995473 . C G 5.46 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,0,2;MQ=48;PV4=1,1,0.12,1 PL:DP:SP:GT:GQ 34,0,60:5:0:0/1:37 chr10 101996787 . C G 38 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,5;MQ=47;PV4=0.44,0.41,0.023,1 PL:DP:SP:GT:GQ 68,0,71:9:0:0/1:69 chr10 102016044 . C T 43.3 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=50 PL:DP:SP:GT:GQ 76,15,0:5:0:1/1:75 chr10 102114201 . G A 22 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=2,3,6,0;MQ=48;PV4=0.061,0.016,0.0027,0.1 PL:DP:SP:GT:GQ 52,0,144:11:12:0/1:55 chr10 102267312 . C G 24 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=4,5,0,6;MQ=49;PV4=0.1,0.006,0.15,1 PL:DP:SP:GT:GQ 54,0,224:15:10:0/1:57 chr10 102780312 . G T 25 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=49;PV4=1,0.00071,0.32,0.41 PL:DP:SP:GT:GQ 55,0,106:7:0:0/1:58 chr10 102796952 . C A 6.2 . DP=22;AF1=0.4999;CI95=0.5,0.5;DP4=6,5,0,4;MQ=49;PV4=0.1,0.018,0.0055,1 PL:DP:SP:GT:GQ 35,0,255:15:10:0/1:38 chr10 103221870 . CAGGAGGA CAGGA 99 . INDEL;DP=14;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=50 PL:DP:SP:GT:GQ 242,30,0:10:0:1/1:99 chr10 103294568 . T G 31 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=2,16,1,6;MQ=49;PV4=1,9.7e-05,3.2e-05,0.12 PL:DP:SP:GT:GQ 61,0,255:25:0:0/1:64 chr10 103340168 . C G 3.01 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,0,2;MQ=49;PV4=1,1,0.048,0.41 PL:DP:SP:GT:GQ 30,0,32:4:0:0/1:31 chr10 103432592 . A C 17.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=48;PV4=1,0.18,0.1,1 PL:DP:SP:GT:GQ 47,0,62:7:0:0/1:50 chr10 103541948 . C T 20 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 52,9,0:3:0:1/1:63 chr10 104136469 . T C 76 . DP=44;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=48 PL:DP:SP:GT:GQ 109,27,0:9:0:1/1:99 chr10 104233278 . G A 5.46 . DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,0.035,0.44,0.48 PL:DP:SP:GT:GQ 34,0,45:6:0:0/1:37 chr10 104375258 . G A 4.13 . DP=3;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,28:2:0:0/1:30 chr10 104459079 . TAA T 99 . INDEL;DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=50 PL:DP:SP:GT:GQ 184,24,0:8:0:1/1:96 chr10 104572276 . A G 99 . DP=31;AF1=1;CI95=1,1;DP4=0,0,25,1;MQ=48 PL:DP:SP:GT:GQ 159,78,0:26:0:1/1:99 chr10 105158281 . T G 60 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,9;MQ=48;PV4=1,0.29,9.5e-05,1 PL:DP:SP:GT:GQ 90,0,89:15:0:0/1:89 chr10 105176179 . T C 68.1 . DP=30;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=48 PL:DP:SP:GT:GQ 101,21,0:7:0:1/1:84 chr10 105362209 . T C 72.4 . DP=78;AF1=0.5554;CI95=0.5,1;DP4=1,2,5,6;MQ=49;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 102,0,7:14:0:0/1:10 chr10 105363289 . T C 53 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=8,5,2,2;MQ=49;PV4=1,0.14,4.8e-14,0.45 PL:DP:SP:GT:GQ 83,0,255:17:0:0/1:86 chr10 105659826 . T C 7.8 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=18,3,7,0;MQ=50;PV4=0.55,1.2e-06,0.0005,1 PL:DP:SP:GT:GQ 37,0,255:28:3:0/1:40 chr10 105762429 . C G 9.52 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=5,2,0,2;MQ=49;PV4=0.17,0.09,5.5e-09,1 PL:DP:SP:GT:GQ 39,0,219:9:8:0/1:42 chr10 105793173 . T G 18.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=4,7,2,4;MQ=50;PV4=1,2.9e-06,1,1 PL:DP:SP:GT:GQ 48,0,255:17:0:0/1:51 chr10 105796449 . A G 29.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 62,12,0:4:0:1/1:72 chr10 105796819 . A G 37.5 . DP=24;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=49 PL:DP:SP:GT:GQ 70,12,0:4:0:1/1:72 chr10 105799825 . G A 10.4 . DP=19;AF1=0.5001;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,1,0.25,1 PL:DP:SP:GT:GQ 40,0,34:6:0:0/1:36 chr10 105833027 . T A 5.46 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=4,1,0,3;MQ=49;PV4=0.14,0.076,1,0.41 PL:DP:SP:GT:GQ 34,0,131:8:8:0/1:37 chr10 108380213 . G A 99 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=11,8,14,8;MQ=48;PV4=0.76,0.0024,6.5e-05,1 PL:DP:SP:GT:GQ 222,0,255:41:1:0/1:99 chr10 108389249 . T C 84.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=43 PL:DP:SP:GT:GQ 117,12,0:4:0:1/1:72 chr10 111631665 . C G 37 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=0,21,0,15;MQ=50;PV4=1,7.4e-12,0.029,1 PL:DP:SP:GT:GQ 67,0,242:36:0:0/1:70 chr10 112053827 . A G 8.44 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 chr10 112328838 . C G 88 . DP=12;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=48 PL:DP:SP:GT:GQ 121,36,0:12:0:1/1:99 chr10 112361870 . A G 28 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=47 PL:DP:SP:GT:GQ 60,9,0:3:0:1/1:63 chr10 112641053 . A G 24 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=5,10,5,1;MQ=49;PV4=0.063,0.00086,0.0011,1 PL:DP:SP:GT:GQ 54,0,255:21:12:0/1:57 chr10 113862045 . C CTT 6.56 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 chr10 113940329 . T C 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,1,14;MQ=44 PL:DP:SP:GT:GQ 255,45,0:15:0:1/1:99 chr10 114043541 . G A 34 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,3,0,5;MQ=48;PV4=0.44,0.029,0.039,1 PL:DP:SP:GT:GQ 64,0,137:10:4:0/1:67 chr10 114053546 . C G 8.65 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=1,1,3,1;MQ=50;PV4=1,0.013,0.27,1 PL:DP:SP:GT:GQ 38,0,36:6:0:0/1:37 chr10 114059330 . TCTCTGTTTTCCTCTGTTTTCC TCTCTGTTTTCC 99 . INDEL;DP=28;AF1=1;CI95=0.5,1;DP4=0,1,0,7;MQ=50;PV4=1,1,1,0.43 PL:DP:SP:GT:GQ 193,9,0:8:0:1/1:63 chr10 114186624 . G A 99 . DP=31;AF1=1;CI95=1,1;DP4=0,0,2,23;MQ=49 PL:DP:SP:GT:GQ 132,75,0:25:0:1/1:99 chr10 114224502 . C G 6.98 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,3;MQ=50;PV4=0.25,0,1,0.008 PL:DP:SP:GT:GQ 36,0,38:4:0:0/1:37 chr10 114828193 . A C 75 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=43 PL:DP:SP:GT:GQ 107,9,0:3:0:1/1:63 chr10 115242531 . T G 3.01 . DP=11;AF1=0.4997;CI95=0.5,0.5;DP4=2,1,1,1;MQ=50;PV4=1,0.12,0,1 PL:DP:SP:GT:GQ 30,0,99:5:0:0/1:33 chr10 115242720 . T A 16.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=2,3,3,2;MQ=44;PV4=1,0.0074,0.047,1 PL:DP:SP:GT:GQ 46,0,159:10:0:0/1:49 chr10 115338305 . T C 47 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=13,0,7,0;MQ=49;PV4=1,1.7e-08,0.00076,1 PL:DP:SP:GT:GQ 77,0,230:20:0:0/1:80 chr10 115341545 . G C 16.1 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=49;PV4=1,0.097,0.22,0.12 PL:DP:SP:GT:GQ 46,0,77:6:0:0/1:49 chr10 115343803 . C T 75 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=43 PL:DP:SP:GT:GQ 107,9,0:3:0:1/1:63 chr10 115349397 . AGGGG AGGG 91.2 . INDEL;DP=19;AF1=1;CI95=0.5,1;DP4=1,1,11,2;MQ=50;PV4=0.37,1,1,1 PL:DP:SP:GT:GQ 130,6,0:15:4:1/1:49 chr10 115370274 . T C 72 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=2,11,2,2;MQ=49;PV4=0.22,1.7e-05,4.5e-14,1 PL:DP:SP:GT:GQ 102,0,255:17:7:0/1:99 chr10 115377190 . T G 70.5 . DP=14;AF1=1;CI95=0.5,1;DP4=1,0,9,0;MQ=45;PV4=1,1,0.2,0.32 PL:DP:SP:GT:GQ 102,7,0:10:0:1/1:57 chr10 115405664 . C T 54 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=10,5,5,1;MQ=49;PV4=0.62,0.00063,5e-05,0.2 PL:DP:SP:GT:GQ 84,0,255:21:2:0/1:87 chr10 115411614 . A G 99 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=7,10,7,8;MQ=49;PV4=1,2.2e-06,0.038,1 PL:DP:SP:GT:GQ 148,0,255:32:0:0/1:99 chr10 115601169 . A G 7.8 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=47;PV4=1,0.17,0.044,1 PL:DP:SP:GT:GQ 37,0,51:4:0:0/1:40 chr10 116044587 . C T 33 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=48;PV4=1,0.00024,0.063,0.31 PL:DP:SP:GT:GQ 63,0,102:8:0:0/1:66 chr10 116058933 . G A 11.9 . DP=9;AF1=0.5939;CI95=0.5,1;DP4=1,0,2,0;MQ=47;PV4=1,1,0,1 PL:DP:SP:GT:GQ 41,0,5:3:0:0/1:7 chr10 116060194 . AGG AGGG 84.5 . INDEL;DP=10;AF1=0.5025;CI95=0.5,0.5;DP4=0,2,0,6;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 122,0,20:8:0:0/1:23 chr10 116073696 . C T 80 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=10,12,5,4;MQ=49;PV4=0.7,1.6e-05,2.2e-06,0.43 PL:DP:SP:GT:GQ 110,0,255:31:2:0/1:99 chr10 116199010 . C G 81 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=3,5,0,9;MQ=47;PV4=0.082,0.027,7.7e-06,1 PL:DP:SP:GT:GQ 111,0,202:17:11:0/1:99 chr10 116307504 . A G 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,6,16;MQ=44 PL:DP:SP:GT:GQ 255,66,0:22:0:1/1:99 chr10 116335246 . G A 56.2 . DP=49;AF1=0.7303;CI95=0.5,1;DP4=0,1,2,4;MQ=48;PV4=1,0.4,0.23,1 PL:DP:SP:GT:GQ 85,0,2:7:0:0/1:3 chr10 116702545 . T G 37.5 . DP=14;AF1=1;CI95=0.5,1;DP4=0,1,0,6;MQ=49;PV4=1,1,0.14,0.49 PL:DP:SP:GT:GQ 69,7,0:7:0:1/1:57 chr10 116931101 . CT CTTT 99 . INDEL;DP=11;AF1=0.95;CI95=0.5,1;DP4=0,1,0,5;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 149,0,0:6:0:1/1:10 chr10 117075175 . G A 88 . DP=31;AF1=1;CI95=1,1;DP4=0,0,5,3;MQ=49 PL:DP:SP:GT:GQ 121,24,0:8:0:1/1:96 chr10 117308924 . T G 18.2 . DP=10;AF1=0.5102;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,1,0.0062,1 PL:DP:SP:GT:GQ 48,0,14:5:0:0/1:17 chr10 118220500 . T G 28 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=10,2,0,9;MQ=49;PV4=0.00022,1.4e-05,0.0031,1 PL:DP:SP:GT:GQ 58,0,244:21:37:0/1:61 chr10 118313265 . T C 99 . DP=16;AF1=0.5032;CI95=0.5,0.5;DP4=1,1,10,2;MQ=47;PV4=0.4,0.37,0.073,1 PL:DP:SP:GT:GQ 171,0,19:14:4:0/1:22 chr10 118357490 . C T 8.64 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=7,18,7,0;MQ=49;PV4=0.001,2.5e-05,0.0046,1 PL:DP:SP:GT:GQ 38,0,255:32:30:0/1:41 chr10 118363642 . T C 28 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=1,17,0,6;MQ=49;PV4=1,1.9e-08,2.3e-05,1 PL:DP:SP:GT:GQ 58,0,255:24:0:0/1:61 chr10 118364818 . G T 7.8 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=9,0,4,0;MQ=49;PV4=1,7.2e-05,0.042,1 PL:DP:SP:GT:GQ 37,0,204:13:0:0/1:40 chr10 118364842 . A G 39 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=18,0,10,0;MQ=49;PV4=1,1.6e-13,0.012,0.36 PL:DP:SP:GT:GQ 69,0,243:28:0:0/1:72 chr10 119014023 . C T 13.9 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 chr10 119014931 . C T 31 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=8,4,6,1;MQ=47;PV4=0.6,1.2e-07,1.7e-05,1 PL:DP:SP:GT:GQ 61,0,255:19:2:0/1:64 chr10 119014948 . C A 99 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=8,3,8,1;MQ=47;PV4=0.59,0.082,1.4e-05,1 PL:DP:SP:GT:GQ 182,0,255:20:2:0/1:99 chr10 119029744 . G A 99 . DP=56;AF1=0.5;CI95=0.5,0.5;DP4=10,26,5,12;MQ=49;PV4=1,9.4e-19,2.4e-10,1 PL:DP:SP:GT:GQ 163,0,255:53:0:0/1:99 chr10 119768551 . C T 99 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=13,6,12,5;MQ=49;PV4=1,1.2e-15,0.00012,1 PL:DP:SP:GT:GQ 154,0,255:36:0:0/1:99 chr10 120692771 . T C 15.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,3;MQ=48;PV4=1,0.0036,0.00044,0.44 PL:DP:SP:GT:GQ 45,0,202:12:0:0/1:48 chr10 120818609 . C T 14.7 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:DP:SP:GT:GQ 47,12,0:4:0:1/1:72 chr10 120917445 . G A 74 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=6,12,5,8;MQ=50;PV4=1,6.2e-09,0.0023,1 PL:DP:SP:GT:GQ 104,0,255:31:0:0/1:99 chr10 120919246 . T C 99 . DP=29;AF1=0.502;CI95=0.5,0.5;DP4=1,2,8,14;MQ=50;PV4=1,3.2e-06,0.36,1 PL:DP:SP:GT:GQ 130,0,21:25:0:0/1:24 chr10 120928092 . A G 8.64 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,3;MQ=49;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 38,0,65:8:0:0/1:41 chr10 120933324 . G A 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 chr10 120933901 . T C 41 . DP=13;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=50 PL:DP:SP:GT:GQ 74,33,0:11:0:1/1:99 chr10 121199189 . T C 51 . DP=17;AF1=1;CI95=1,1;DP4=0,1,13,0;MQ=50;PV4=0.071,1,0.4,1 PL:DP:SP:GT:GQ 84,24,0:14:0:1/1:96 chr10 121199437 . T C 26 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 chr10 121201626 . T C 99 . DP=22;AF1=1;CI95=1,1;DP4=0,0,0,19;MQ=46 PL:DP:SP:GT:GQ 168,57,0:19:0:1/1:99 chr10 121207895 . G A,T 12.2 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 58,23,41,14,0,41:4:0:1/1:63 chr10 121274957 . T G 4.16 . DP=9;AF1=0.5062;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.27,0.33,0.18 PL:DP:SP:GT:GQ 32,0,16:3:0:0/1:19 chr10 121287019 . G A 99 . DP=21;AF1=1;CI95=0.5,1;DP4=0,1,0,14;MQ=45;PV4=1,1,0.046,1 PL:DP:SP:GT:GQ 181,15,0:15:0:1/1:75 chr10 121436362 . A G 99 . DP=37;AF1=1;CI95=1,1;DP4=0,0,17,11;MQ=47 PL:DP:SP:GT:GQ 255,84,0:28:0:1/1:99 chr10 121565015 . C G 33 . DP=9;AF1=0.5003;CI95=0.5,0.5;DP4=0,2,0,3;MQ=47;PV4=1,1,0.045,1 PL:DP:SP:GT:GQ 63,0,29:5:0:0/1:32 chr10 121612471 . A G 15.1 . DP=17;AF1=0.5005;CI95=0.5,0.5;DP4=2,0,4,0;MQ=48;PV4=1,1,0.032,0.27 PL:DP:SP:GT:GQ 45,0,27:6:0:0/1:30 chr10 122278402 . T A 3.01 . DP=16;AF1=0.4997;CI95=0.5,0.5;DP4=1,3,0,2;MQ=48;PV4=1,0.4,0.032,1 PL:DP:SP:GT:GQ 30,0,86:6:0:0/1:33 chr10 122625233 . T G 21 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,4;MQ=49;PV4=0.33,0.18,0.015,0.39 PL:DP:SP:GT:GQ 51,0,46:6:0:0/1:48 chr10 122626615 . T G 36 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=3,6,5,0;MQ=48;PV4=0.031,0.0027,4.7e-06,0.012 PL:DP:SP:GT:GQ 66,0,250:14:15:0/1:69 chr10 122648671 . T A 17.1 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=4,2,0,5;MQ=49;PV4=0.061,1,0.43,1 PL:DP:SP:GT:GQ 47,0,61:11:12:0/1:50 chr10 122663585 . G A 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,11,2;MQ=47 PL:DP:SP:GT:GQ 178,39,0:13:0:1/1:99 chr10 122665509 . T G 31 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=10,2,1,7;MQ=49;PV4=0.0045,0.051,0.00012,1 PL:DP:SP:GT:GQ 61,0,192:20:23:0/1:64 chr10 122668296 . G A 99 . DP=16;AF1=1;CI95=1,1;DP4=0,0,1,12;MQ=44 PL:DP:SP:GT:GQ 222,39,0:13:0:1/1:99 chr10 123596254 . T C 99 . DP=24;AF1=1;CI95=1,1;DP4=0,0,16,4;MQ=46 PL:DP:SP:GT:GQ 245,60,0:20:0:1/1:99 chr10 123845322 . T C 23.1 . DP=15;AF1=0.5129;CI95=0.5,0.5;DP4=0,1,2,1;MQ=48;PV4=1,0.34,0.3,1 PL:DP:SP:GT:GQ 53,0,13:4:0:0/1:16 chr10 123976391 . C A 26 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 chr10 124036226 . T C 3.41 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 chr10 124036494 . T C 8.87 . DP=6;AF1=0.5336;CI95=0.5,1;DP4=0,1,0,3;MQ=47;PV4=1,0.42,1,0.093 PL:DP:SP:GT:GQ 38,0,9:4:0:0/1:12 chr10 124089036 . G A 45.3 . DP=22;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 78,15,0:5:0:1/1:75 chr10 124152936 . GA GAA 31.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 70,6,0:2:0:1/1:49 chr10 124183732 . T C 59.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=48 PL:DP:SP:GT:GQ 92,18,0:6:0:1/1:90 chr10 124189197 . A G 99 . DP=39;AF1=1;CI95=1,1;DP4=1,1,16,9;MQ=47;PV4=1,0.22,0.15,1 PL:DP:SP:GT:GQ 224,24,0:27:0:1/1:96 chr10 124271589 . G A 64 . DP=27;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=43 PL:DP:SP:GT:GQ 97,24,0:8:0:1/1:96 chr10 124271595 . G A 99 . DP=25;AF1=1;CI95=1,1;DP4=0,1,0,19;MQ=43;PV4=1,1,0.023,1 PL:DP:SP:GT:GQ 215,42,0:20:0:1/1:99 chr10 124457452 . C T 99 . DP=50;AF1=1;CI95=1,1;DP4=0,0,21,22;MQ=50 PL:DP:SP:GT:GQ 198,129,0:43:0:1/1:99 chr10 124595870 . TCAG T 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,0.43,1,1 PL:DP:SP:GT:GQ 38,0,113:4:0:0/1:41 chr10 124596984 . A G 7.8 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,2;MQ=47;PV4=1,0.35,0.033,1 PL:DP:SP:GT:GQ 37,0,51:4:0:0/1:40 chr10 124640434 . C T 9.52 . DP=7;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,0,4;MQ=50;PV4=0.2,0.0036,1,1 PL:DP:SP:GT:GQ 39,0,28:5:0:0/1:31 chr10 124692017 . G A 16.1 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=1,6,4,0;MQ=49;PV4=0.015,0.075,0.00032,1 PL:DP:SP:GT:GQ 46,0,163:11:18:0/1:49 chr10 124736337 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 chr10 124742792 . G A 99 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=6,1,5,1;MQ=47;PV4=1,0.0099,0,0.24 PL:DP:SP:GT:GQ 158,0,211:13:0:0/1:99 chr10 124810578 . A C 6.79 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 chr10 125622250 . CAAA CAA 89.8 . INDEL;DP=18;AF1=1;CI95=0.5,1;DP4=0,1,0,13;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 130,14,0:14:0:1/1:70 chr10 125689719 . C CAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 chr10 125780954 . T G 12.3 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,4;MQ=49;PV4=1,0.39,0.088,0.02 PL:DP:SP:GT:GQ 42,0,81:11:0:0/1:45 chr10 125801761 . A T 99 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=17,1,10,0;MQ=48;PV4=1,0.043,3.1e-09,1 PL:DP:SP:GT:GQ 138,0,255:28:0:0/1:99 chr10 126086730 . G A 99 . DP=16;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=47 PL:DP:SP:GT:GQ 146,39,0:13:0:1/1:99 chr10 126093991 . T C 99 . DP=31;AF1=1;CI95=1,1;DP4=1,0,21,3;MQ=46;PV4=1,1,0.025,1 PL:DP:SP:GT:GQ 230,57,0:25:0:1/1:99 chr10 126185451 . T C 14.2 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=6,0,3,0;MQ=49;PV4=1,0.0029,0.014,0.45 PL:DP:SP:GT:GQ 44,0,169:9:0:0/1:47 chr10 126631348 . T G 4.77 . DP=35;AF1=0.4999;CI95=0.5,0.5;DP4=13,0,0,4;MQ=49;PV4=0.00042,0.023,0.0034,1 PL:DP:SP:GT:GQ 33,0,205:17:34:0/1:36 chr10 127426588 . C A 99 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=0,13,0,12;MQ=47;PV4=1,0.00077,2.2e-07,1 PL:DP:SP:GT:GQ 165,0,218:25:0:0/1:99 chr10 127426835 . G T 40 . DP=13;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=50 PL:DP:SP:GT:GQ 73,33,0:11:0:1/1:99 chr10 127484617 . C G 52 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=2,0,6,0;MQ=48;PV4=1,0.0013,0.21,1 PL:DP:SP:GT:GQ 82,0,69:8:0:0/1:72 chr10 127484653 . G A 66 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=7,1,7,1;MQ=49;PV4=1,0.00022,0.037,0.29 PL:DP:SP:GT:GQ 96,0,210:16:0:0/1:99 chr10 127522572 . T G 7.8 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,4;MQ=49;PV4=1,0.0094,0.00034,1 PL:DP:SP:GT:GQ 37,0,199:15:0:0/1:40 chr10 127541922 . T G 41.2 . DP=10;AF1=0.5263;CI95=0.5,1;DP4=0,1,0,5;MQ=46;PV4=1,0.24,1,1 PL:DP:SP:GT:GQ 71,0,10:6:0:0/1:13 chr10 127548587 . C G 28 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=49;PV4=1,0.01,0.0077,0.44 PL:DP:SP:GT:GQ 58,0,157:10:0:0/1:61 chr10 127685091 . T C 15.9 . DP=37;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 chr10 127843740 . G T 12 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 chr10 128209769 . T C 35.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:DP:SP:GT:GQ 68,12,0:4:0:1/1:72 chr10 128209797 . C T 41.2 . DP=7;AF1=0.5207;CI95=0.5,1;DP4=1,0,4,1;MQ=48;PV4=1,0.19,0.34,1 PL:DP:SP:GT:GQ 71,0,11:6:0:0/1:14 chr10 128209959 . G T 62.1 . DP=12;AF1=0.9966;CI95=0.5,1;DP4=0,1,0,10;MQ=47;PV4=1,0.00058,0.0033,1 PL:DP:SP:GT:GQ 91,1,0:11:0:1/1:23 chr10 128973671 . C G 26 . DP=27;AF1=0.5002;CI95=0.5,0.5;DP4=0,2,0,6;MQ=48;PV4=1,0.0058,0.024,1 PL:DP:SP:GT:GQ 56,0,30:8:0:0/1:33 chr10 128974621 . C T 11.3 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=48;PV4=1,0.0045,0.12,1 PL:DP:SP:GT:GQ 41,0,130:7:0:0/1:44 chr10 129846010 . G A 97 . DP=30;AF1=1;CI95=1,1;DP4=0,0,22,4;MQ=50 PL:DP:SP:GT:GQ 130,78,0:26:0:1/1:99 chr10 129854369 . T C 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=46 PL:DP:SP:GT:GQ 143,42,0:14:0:1/1:99 chr10 129903522 . C G 25 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=3,3,0,4;MQ=49;PV4=0.2,0.11,0.021,0.41 PL:DP:SP:GT:GQ 55,0,151:10:7:0/1:58 chr10 129908727 . A T 62 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=9,1,0,12;MQ=48;PV4=2e-05,0.0041,0.00047,1 PL:DP:SP:GT:GQ 92,0,193:22:47:0/1:95 chr10 130691338 . T G 90 . DP=18;AF1=1;CI95=1,1;DP4=0,0,9,1;MQ=48 PL:DP:SP:GT:GQ 123,30,0:10:0:1/1:99 chr10 134016115 . G A 93.5 . DP=8;AF1=1;CI95=0.5,1;DP4=1,0,6,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 125,7,0:7:0:1/1:57 chr10 134071848 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 chr10 134161633 . A G 42 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=46 PL:DP:SP:GT:GQ 74,9,0:3:0:1/1:63 chr10 134622408 . T C 45.3 . DP=24;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 78,15,0:5:0:1/1:75 chr10 134750604 . C A 95.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=42 PL:DP:SP:GT:GQ 128,12,0:4:0:1/1:72 chr10 134755298 . C G 3.01 . DP=21;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,3;MQ=50;PV4=1,0.0088,1,1 PL:DP:SP:GT:GQ 30,0,32:4:0:0/1:31 chr10 135053123 . A G 84 . DP=15;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=48 PL:DP:SP:GT:GQ 117,36,0:12:0:1/1:99 chr10 135076523 . C A 9.52 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,1;MQ=49;PV4=1,0.092,0,1 PL:DP:SP:GT:GQ 39,0,70:4:0:0/1:42 chr10 135076596 . T C 99 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=3,11,5,5;MQ=48;PV4=0.2,1.6e-05,4.8e-07,1 PL:DP:SP:GT:GQ 190,0,255:24:7:0/1:99 chr10 135077311 . C G 3.73 . DP=5;AF1=0.5429;CI95=0.5,1;DP4=0,1,0,2;MQ=49;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 31,0,8:3:0:0/1:11 chr10 135082346 . A G 24.5 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 57,12,0:4:0:1/1:72 chr10 135084601 . T C 92.1 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=45 PL:DP:SP:GT:GQ 125,18,0:6:0:1/1:90 chr10 135086380 . C T 67.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=46 PL:DP:SP:GT:GQ 100,12,0:4:0:1/1:72 chr10 135096784 . A G 99 . DP=17;AF1=1;CI95=0.5,1;DP4=1,0,0,11;MQ=46;PV4=0.083,1,0.29,1 PL:DP:SP:GT:GQ 135,11,0:12:0:1/1:66 chr10 135165790 . A G 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,7,11;MQ=46 PL:DP:SP:GT:GQ 255,54,0:18:0:1/1:99 chr10 135179458 . G C 94 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=17,9,4,6;MQ=49;PV4=0.26,2.8e-05,2e-06,0.17 PL:DP:SP:GT:GQ 124,0,255:36:6:0/1:99 chr10 135180430 . A G 15.1 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=7,1,3,1;MQ=49;PV4=1,0.0031,0.015,0.46 PL:DP:SP:GT:GQ 45,0,200:12:0:0/1:48 chr10 135233541 . A G 99 . DP=30;AF1=1;CI95=0.5,1;DP4=1,1,3,14;MQ=47;PV4=0.39,1,0.19,1 PL:DP:SP:GT:GQ 185,8,0:19:4:1/1:56 chr10 135347397 . T C 86 . DP=30;AF1=1;CI95=1,1;DP4=0,0,1,7;MQ=48 PL:DP:SP:GT:GQ 119,24,0:8:0:1/1:96 chr11 193194 . T C 20 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,3;MQ=49;PV4=1,0.052,0.0012,1 PL:DP:SP:GT:GQ 50,0,171:10:0:0/1:53 chr11 237087 . A G 7.87 . DP=9;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,0,2;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,14:3:0:0/1:17 chr11 243987 . G A 99 . DP=15;AF1=0.9966;CI95=0.5,1;DP4=1,0,6,0;MQ=44;PV4=1,1,0,1 PL:DP:SP:GT:GQ 137,1,0:7:0:1/1:23 chr11 244129 . C T 71.2 . DP=9;AF1=0.5263;CI95=0.5,1;DP4=1,0,4,1;MQ=45;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 101,0,10:6:0:0/1:13 chr11 244197 . T C 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,4,8;MQ=45 PL:DP:SP:GT:GQ 216,36,0:12:0:1/1:99 chr11 244490 . ATACCTTTTAGTACCTTTTAG ATACCTTTTAG 99 . INDEL;DP=37;AF1=0.5001;CI95=0.5,0.5;DP4=2,1,1,20;MQ=50;PV4=0.032,1,1,1 PL:DP:SP:GT:GQ 255,0,34:24:15:0/1:37 chr11 293001 . AGG AGGG 91.7 . INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=50 PL:DP:SP:GT:GQ 132,15,0:5:0:1/1:75 chr11 396701 . C T 32 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=48;PV4=1,0.01,0.0053,0.38 PL:DP:SP:GT:GQ 62,0,57:6:0:0/1:59 chr11 400109 . A G 40 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=46 PL:DP:SP:GT:GQ 72,9,0:3:0:1/1:63 chr11 428385 . A G 99 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,5;MQ=46 PL:DP:SP:GT:GQ 134,18,0:6:0:1/1:90 chr11 433387 . A G 3.98 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 chr11 549959 . C T 27 . DP=16;AF1=0.5003;CI95=0.5,0.5;DP4=1,1,2,3;MQ=50;PV4=1,0.12,1,1 PL:DP:SP:GT:GQ 57,0,29:7:0:0/1:32 chr11 554214 . G C 75 . DP=12;AF1=1;CI95=1,1;DP4=0,0,8,1;MQ=49 PL:DP:SP:GT:GQ 108,27,0:9:0:1/1:99 chr11 617537 . C T 45 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,6;MQ=48;PV4=1,0.079,0.18,1 PL:DP:SP:GT:GQ 75,0,60:9:0:0/1:63 chr11 617967 . C G 20.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 52,6,0:2:0:1/1:49 chr11 618172 . A G 69 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,7;MQ=48;PV4=1,0.0023,2.1e-05,1 PL:DP:SP:GT:GQ 99,0,182:15:0:0/1:99 chr11 674458 . G A 88 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=10,0,10,0;MQ=48;PV4=1,1.4e-05,0.00056,1 PL:DP:SP:GT:GQ 118,0,202:20:0:0/1:99 chr11 686798 . G A 50 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=9,0,8,0;MQ=49;PV4=1,1.5e-05,0.00051,1 PL:DP:SP:GT:GQ 80,0,196:17:0:0/1:83 chr11 828784 . A G 95.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=46 PL:DP:SP:GT:GQ 128,15,0:5:0:1/1:75 chr11 838110 . C T 81 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=6,0,12,0;MQ=48;PV4=1,1.3e-07,0.0085,1 PL:DP:SP:GT:GQ 111,0,151:18:0:0/1:99 chr11 840319 . C T 65 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=46;PV4=1,1,0.00029,1 PL:DP:SP:GT:GQ 95,0,59:5:0:0/1:62 chr11 866498 . T C 19 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 chr11 870446 . G A 23.8 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 55,6,0:2:0:1/1:49 chr11 902381 . C G 17.1 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,3;MQ=47;PV4=0.4,0.32,0.19,1 PL:DP:SP:GT:GQ 47,0,42:5:0:0/1:44 chr11 1651830 . G T 42.3 . DP=36;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 75,15,0:5:0:1/1:75 chr11 1857173 . T C 99 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=11,9,11,12;MQ=49;PV4=0.76,1.1e-09,0.00053,1 PL:DP:SP:GT:GQ 188,0,255:43:1:0/1:99 chr11 1901467 . A C 7.59 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 chr11 1944202 . A G 99 . DP=35;AF1=1;CI95=1,1;DP4=0,0,7,22;MQ=47 PL:DP:SP:GT:GQ 255,87,0:29:0:1/1:99 chr11 1947793 . C T 19.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,9;MQ=49;PV4=1,4.6e-11,1,0.42 PL:DP:SP:GT:GQ 49,0,116:13:0:0/1:52 chr11 1950302 . A G 80 . DP=16;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=49 PL:DP:SP:GT:GQ 113,36,0:12:0:1/1:99 chr11 1977552 . G T 13.2 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,4;MQ=50;PV4=1,0.015,1,1 PL:DP:SP:GT:GQ 43,0,71:7:0:0/1:46 chr11 1977557 . C T 11.3 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,4;MQ=48;PV4=1,1,0.018,1 PL:DP:SP:GT:GQ 41,0,43:7:0:0/1:42 chr11 2427211 . G A 45 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=13,0,14,0;MQ=49;PV4=1,1.3e-18,7.8e-06,0.31 PL:DP:SP:GT:GQ 75,0,225:27:0:0/1:78 chr11 2427291 . A C 10.5 . DP=38;AF1=0.5163;CI95=0.5,1;DP4=1,0,3,0;MQ=49;PV4=1,0.26,0.26,1 PL:DP:SP:GT:GQ 40,0,12:4:0:0/1:15 chr11 2439542 . A G 75 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=43 PL:DP:SP:GT:GQ 107,9,0:3:0:1/1:63 chr11 2441686 . TGG TGGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 chr11 2868878 . T C 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 chr11 3026692 . T G 52.5 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=45 PL:DP:SP:GT:GQ 85,12,0:4:0:1/1:72 chr11 3039921 . A G 4.13 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=5,0,0,5;MQ=47;PV4=0.0079,0.022,0.072,1 PL:DP:SP:GT:GQ 32,0,117:10:21:0/1:35 chr11 3059441 . A G 18.1 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,3;MQ=47;PV4=0.4,0.12,0.032,1 PL:DP:SP:GT:GQ 48,0,85:6:4:0/1:51 chr11 3063448 . C A 49 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=3,2,0,6;MQ=48;PV4=0.061,0.067,0.00089,1 PL:DP:SP:GT:GQ 79,0,128:11:12:0/1:82 chr11 3249829 . G A 57 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=2,6,3,5;MQ=49;PV4=1,7.1e-06,0.058,1 PL:DP:SP:GT:GQ 87,0,234:16:0:0/1:90 chr11 3381843 . A G 33 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 65,9,0:3:0:1/1:63 chr11 3392745 . G A 18.1 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=8,0,7,0;MQ=50;PV4=1,5.7e-06,1,1 PL:DP:SP:GT:GQ 48,0,186:15:0:0/1:51 chr11 3661585 . ATGG ATGGTGG 99 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=50 PL:DP:SP:GT:GQ 157,12,0:4:0:1/1:72 chr11 3994172 . A G 77 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=7,3,0,7;MQ=48;PV4=0.0098,1,1.2e-06,1 PL:DP:SP:GT:GQ 107,0,181:17:20:0/1:99 chr11 4104060 . A C 49 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=6,0,6,0;MQ=48;PV4=1,1e-05,0.092,0.4 PL:DP:SP:GT:GQ 79,0,164:12:0:0/1:82 chr11 4123345 . C G 98 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=47 PL:DP:SP:GT:GQ 131,27,0:9:0:1/1:99 chr11 4128751 . C G 18.1 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,4,0,4;MQ=49;PV4=0.24,0.013,0.0022,1 PL:DP:SP:GT:GQ 48,0,211:11:6:0/1:51 chr11 4133317 . C A 64.1 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=47 PL:DP:SP:GT:GQ 97,18,0:6:0:1/1:90 chr11 4389404 . AGGG AGG 99 . INDEL;DP=36;AF1=0.5;CI95=0.5,0.5;DP4=14,5,10,3;MQ=50;PV4=1,2.9e-07,1,1 PL:DP:SP:GT:GQ 160,0,231:32:0:0/1:99 chr11 4496916 . C T 57 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,5;MQ=47;PV4=0.44,0.00015,0.00036,1 PL:DP:SP:GT:GQ 87,0,152:9:0:0/1:90 chr11 4566518 . T C 19.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=2,3,0,4;MQ=47;PV4=0.44,0.078,0.074,1 PL:DP:SP:GT:GQ 49,0,126:9:4:0/1:52 chr11 4566711 . C T 99 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=19,7,3,11;MQ=49;PV4=0.0027,3.2e-12,1.2e-16,1 PL:DP:SP:GT:GQ 132,0,255:40:26:0/1:99 chr11 4622207 . G A 6.98 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,3,0;MQ=49;PV4=1,0.15,0.44,1 PL:DP:SP:GT:GQ 36,0,75:6:0:0/1:39 chr11 4622208 . G A 4.77 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=4,1,3,0;MQ=46;PV4=1,0.2,0.073,1 PL:DP:SP:GT:GQ 33,0,109:8:0:0/1:36 chr11 4623279 . A G 30 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=46 PL:DP:SP:GT:GQ 62,9,0:3:0:1/1:63 chr11 4624394 . T C 51.1 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=49 PL:DP:SP:GT:GQ 84,18,0:6:0:1/1:90 chr11 4967468 . G A 68 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,2,2,1;MQ=47;PV4=1,0.0055,0,0.47 PL:DP:SP:GT:GQ 98,0,124:6:0:0/1:99 chr11 5020416 . A G 17.2 . DP=58;AF1=0.508;CI95=0.5,0.5;DP4=1,1,2,2;MQ=50;PV4=1,1,0.27,1 PL:DP:SP:GT:GQ 47,0,15:6:0:0/1:18 chr11 5141980 . A G 99 . DP=30;AF1=1;CI95=1,1;DP4=0,0,5,22;MQ=47 PL:DP:SP:GT:GQ 255,81,0:27:0:1/1:99 chr11 5269584 . T A 5.29 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 chr11 5322737 . A G 99 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=10,19,5,4;MQ=48;PV4=0.44,0.13,1.5e-14,1 PL:DP:SP:GT:GQ 177,0,255:38:4:0/1:99 chr11 5323071 . C T 99 . DP=45;AF1=1;CI95=1,1;DP4=1,1,17,17;MQ=44;PV4=1,1,9.7e-13,1 PL:DP:SP:GT:GQ 255,52,0:36:0:1/1:99 chr11 5336716 . T A 3.01 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,0.31,0,1 PL:DP:SP:GT:GQ 30,0,105:4:0:0/1:33 chr11 5344561 . G A 45 . DP=10;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=50 PL:DP:SP:GT:GQ 78,24,0:8:0:1/1:96 chr11 5344772 . T C 37.1 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,1,5;MQ=50 PL:DP:SP:GT:GQ 70,18,0:6:0:1/1:90 chr11 5344902 . C G,A 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,9,10;MQ=49 PL:DP:SP:GT:GQ 180,54,170,0,31,170:19:0:1/1:99 chr11 5345170 . A G 79.1 . DP=28;AF1=1;CI95=1,1;DP4=0,0,4,3;MQ=48 PL:DP:SP:GT:GQ 112,21,0:7:0:1/1:84 chr11 5345486 . G A 5.29 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 chr11 5358619 . C T 3.41 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 chr11 5474885 . A G 4.77 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,2;MQ=47;PV4=1,1,0.002,1 PL:DP:SP:GT:GQ 33,0,35:5:0:0/1:34 chr11 5510284 . A G 65.2 . DP=53;AF1=1;CI95=0.5,1;DP4=1,0,3,6;MQ=49;PV4=0.4,0.19,0.24,1 PL:DP:SP:GT:GQ 97,8,0:10:0:1/1:56 chr11 5510341 . C T 55 . DP=73;AF1=0.5;CI95=0.5,0.5;DP4=24,12,17,12;MQ=50;PV4=0.61,5.5e-22,0.13,1 PL:DP:SP:GT:GQ 85,0,255:65:2:0/1:88 chr11 5510497 . T C 99 . DP=54;AF1=1;CI95=1,1;DP4=1,0,13,3;MQ=48;PV4=1,1,0.24,1 PL:DP:SP:GT:GQ 166,33,0:17:0:1/1:99 chr11 5510626 . T C 16.1 . DP=58;AF1=0.501;CI95=0.5,0.5;DP4=0,2,1,3;MQ=46;PV4=1,0.11,0.46,1 PL:DP:SP:GT:GQ 46,0,24:6:0:0/1:27 chr11 5510928 . G A 38.5 . DP=14;AF1=0.8277;CI95=0.5,1;DP4=0,1,0,9;MQ=49;PV4=1,0.019,0.29,1 PL:DP:SP:GT:GQ 67,0,1:10:0:1/1:5 chr11 5536537 . A C 20.6 . DP=29;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 53,12,0:4:0:1/1:72 chr11 5566112 . C T 7.8 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=10,8,5,1;MQ=50;PV4=0.35,0.00038,0.002,1 PL:DP:SP:GT:GQ 37,0,255:24:5:0/1:40 chr11 5566365 . T C 99 . DP=52;AF1=1;CI95=1,1;DP4=0,1,26,17;MQ=48;PV4=0.41,0.31,0.13,1 PL:DP:SP:GT:GQ 255,105,0:44:0:1/1:99 chr11 5573193 . A T 40 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=5,1,5,0;MQ=48;PV4=1,4.1e-06,0.044,1 PL:DP:SP:GT:GQ 70,0,199:11:0:0/1:73 chr11 5593467 . A G 9.52 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=45;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 39,0,43:4:0:0/1:41 chr11 5602275 . A G 38 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=10,3,6,1;MQ=49;PV4=1,3.2e-07,0.011,1 PL:DP:SP:GT:GQ 68,0,255:20:0:0/1:71 chr11 5602605 . G A 63 . DP=76;AF1=0.5;CI95=0.5,0.5;DP4=28,26,8,9;MQ=49;PV4=0.79,5.6e-19,1.2e-15,0.45 PL:DP:SP:GT:GQ 93,0,255:71:1:0/1:96 chr11 5602615 . A G 78 . DP=79;AF1=0.5;CI95=0.5,0.5;DP4=22,27,12,13;MQ=49;PV4=0.81,1.1e-31,5.3e-08,1 PL:DP:SP:GT:GQ 108,0,255:74:1:0/1:99 chr11 5602679 . T C 99 . DP=72;AF1=0.5;CI95=0.5,0.5;DP4=17,20,15,13;MQ=49;PV4=0.62,6.8e-18,0.00032,1 PL:DP:SP:GT:GQ 186,0,255:65:2:0/1:99 chr11 5602790 . A G 39 . DP=73;AF1=0.5;CI95=0.5,0.5;DP4=10,18,3,9;MQ=50;PV4=0.72,6.3e-15,0.0004,1 PL:DP:SP:GT:GQ 69,0,255:40:1:0/1:72 chr11 5602968 . G A 99 . DP=64;AF1=1;CI95=1,1;DP4=0,1,21,32;MQ=46;PV4=1,1,0.016,1 PL:DP:SP:GT:GQ 255,136,0:54:0:1/1:99 chr11 5632212 . G A 42 . DP=50;AF1=0.5003;CI95=0.5,0.5;DP4=2,0,1,4;MQ=48;PV4=0.14,0.17,0.12,1 PL:DP:SP:GT:GQ 72,0,29:7:8:0/1:32 chr11 5692817 . T G 30 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 62,9,0:3:0:1/1:63 chr11 5701409 . G C 99 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=3,16,0,9;MQ=48;PV4=0.53,9e-06,2.7e-18,1 PL:DP:SP:GT:GQ 136,0,255:28:3:0/1:99 chr11 5717762 . T C 99 . DP=35;AF1=1;CI95=1,1;DP4=1,0,11,18;MQ=47;PV4=0.4,1,0.026,1 PL:DP:SP:GT:GQ 255,69,0:30:0:1/1:99 chr11 5718517 . G A 27.5 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 60,12,0:4:0:1/1:72 chr11 5758062 . T C 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,5,10;MQ=48 PL:DP:SP:GT:GQ 208,45,0:15:0:1/1:99 chr11 5758118 . A C 3.98 . DP=31;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 chr11 5776470 . T G 22 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 chr11 5809548 . G A 99 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=4,17,4,11;MQ=49;PV4=0.69,1.7e-13,0.001,1 PL:DP:SP:GT:GQ 148,0,255:36:2:0/1:99 chr11 5841856 . C T 99 . DP=33;AF1=1;CI95=0.5,1;DP4=1,1,9,15;MQ=45;PV4=1,0.076,0.0011,1 PL:DP:SP:GT:GQ 255,10,0:26:0:1/1:60 chr11 5842356 . A G 67 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=18,6,3,4;MQ=49;PV4=0.17,7.5e-05,4.4e-06,0.23 PL:DP:SP:GT:GQ 97,0,255:31:8:0/1:99 chr11 5842628 . T C 30.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 62,6,0:2:0:1/1:49 chr11 5906048 . G A 99 . DP=57;AF1=1;CI95=1,1;DP4=1,0,21,28;MQ=46;PV4=0.44,0.24,0.014,1 PL:DP:SP:GT:GQ 255,118,0:50:0:1/1:99 chr11 5906143 . T C 99 . DP=54;AF1=0.5;CI95=0.5,0.5;DP4=13,11,11,9;MQ=49;PV4=1,3.5e-11,9.6e-06,1 PL:DP:SP:GT:GQ 189,0,255:44:0:0/1:99 chr11 5906192 . A C 99 . DP=68;AF1=1;CI95=1,1;DP4=0,1,27,31;MQ=46;PV4=1,0.069,0.19,1 PL:DP:SP:GT:GQ 255,146,0:59:0:1/1:99 chr11 5968728 . T C 99 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=12,7,4,3;MQ=48;PV4=1,0.14,5.1e-14,1 PL:DP:SP:GT:GQ 154,0,255:26:0:0/1:99 chr11 6220376 . G C 33 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=7,0,8,0;MQ=50;PV4=1,3.3e-12,0.11,1 PL:DP:SP:GT:GQ 63,0,182:15:0:0/1:66 chr11 6239344 . G A 99 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=2,1,2,3;MQ=45;PV4=1,0.038,6.4e-06,1 PL:DP:SP:GT:GQ 155,0,110:8:0:0/1:99 chr11 6520015 . G T 42.2 . DP=23;AF1=1;CI95=0.5,1;DP4=0,1,8,0;MQ=49;PV4=0.11,1,0.26,1 PL:DP:SP:GT:GQ 74,8,0:9:0:1/1:56 chr11 6520164 . T A 99 . DP=29;AF1=1;CI95=1,1;DP4=0,1,9,13;MQ=47;PV4=1,0.47,0.11,1 PL:DP:SP:GT:GQ 255,41,0:23:0:1/1:99 chr11 6622714 . G A 99 . DP=58;AF1=0.5;CI95=0.5,0.5;DP4=18,18,13,8;MQ=49;PV4=0.42,3.6e-13,1.7e-07,1 PL:DP:SP:GT:GQ 181,0,255:57:4:0/1:99 chr11 6629530 . G A 10.4 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,11,0,5;MQ=50;PV4=1,4.7e-05,0.0098,0.5 PL:DP:SP:GT:GQ 40,0,255:17:0:0/1:43 chr11 6629665 . C T 99 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=11,11,6,12;MQ=48;PV4=0.35,5.5e-16,4.8e-08,0.49 PL:DP:SP:GT:GQ 201,0,255:40:5:0/1:99 chr11 6629729 . C G 17.1 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=2,10,0,5;MQ=48;PV4=1,0.17,0.21,1 PL:DP:SP:GT:GQ 47,0,185:17:0:0/1:50 chr11 6629738 . A G 20 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,5;MQ=49;PV4=1,0.1,0.035,1 PL:DP:SP:GT:GQ 50,0,118:13:0:0/1:53 chr11 6630028 . TCCCCC TCCCC 9.9 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 chr11 6630833 . G A 76 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=4,18,3,6;MQ=49;PV4=0.38,0.061,6.3e-05,1 PL:DP:SP:GT:GQ 106,0,255:31:4:0/1:99 chr11 6632857 . A T 49 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=7,0,4,0;MQ=48;PV4=1,0.29,0.00032,1 PL:DP:SP:GT:GQ 79,0,148:11:0:0/1:82 chr11 6636106 . T A 99 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=5,15,9,5;MQ=49;PV4=0.035,1.5e-05,0.00087,1 PL:DP:SP:GT:GQ 147,0,255:34:15:0/1:99 chr11 6637504 . G A 69 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=17,0,11,0;MQ=46;PV4=1,5e-06,5.3e-05,1 PL:DP:SP:GT:GQ 99,0,227:28:0:0/1:99 chr11 6637518 . A G 99 . DP=33;AF1=1;CI95=1,1;DP4=0,0,25,2;MQ=45 PL:DP:SP:GT:GQ 212,81,0:27:0:1/1:99 chr11 6638936 . T G 18.1 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=13,2,0,7;MQ=49;PV4=0.00021,6e-06,0.0044,1 PL:DP:SP:GT:GQ 48,0,255:22:37:0/1:51 chr11 6789929 . C A 25 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=6,0,2,2;MQ=48;PV4=0.13,4.9e-05,0.25,1 PL:DP:SP:GT:GQ 55,0,163:10:9:0/1:58 chr11 6790106 . T C,G 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,9,3;MQ=47 PL:DP:SP:GT:GQ 166,33,156,0,12,156:12:0:1/1:99 chr11 6816778 . A G 99 . DP=46;AF1=1;CI95=1,1;DP4=0,1,8,5;MQ=48;PV4=0.43,0.44,1,1 PL:DP:SP:GT:GQ 147,21,0:14:0:1/1:84 chr11 6816875 . G A 99 . DP=60;AF1=0.5;CI95=0.5,0.5;DP4=10,18,10,14;MQ=49;PV4=0.78,8e-17,0.004,1 PL:DP:SP:GT:GQ 164,0,255:52:1:0/1:99 chr11 6865648 . A G 26 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=11,0,4,1;MQ=49;PV4=0.31,0.00028,0.13,1 PL:DP:SP:GT:GQ 56,0,212:16:0:0/1:59 chr11 6865831 . A G 99 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=4,3,1,4;MQ=47;PV4=0.29,1,0,1 PL:DP:SP:GT:GQ 145,0,206:12:5:0/1:99 chr11 6891704 . T C 77 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=5,5,6,5;MQ=49;PV4=1,3.1e-06,0.42,1 PL:DP:SP:GT:GQ 107,0,255:21:0:0/1:99 chr11 6943254 . C T 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=43 PL:DP:SP:GT:GQ 219,39,0:13:0:1/1:99 chr11 6976988 . A T 99 . DP=36;AF1=1;CI95=1,1;DP4=0,2,12,9;MQ=46;PV4=0.22,1,0.2,1 PL:DP:SP:GT:GQ 249,21,0:23:7:1/1:84 chr11 7022717 . T C 3.01 . DP=6;AF1=0.4997;CI95=0.5,0.5;DP4=1,2,1,0;MQ=48;PV4=1,0.059,0,0.36 PL:DP:SP:GT:GQ 30,0,130:4:0:0/1:33 chr11 7059960 . A C 16.1 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,1,2,1;MQ=50;PV4=1,0.00085,0.33,0.18 PL:DP:SP:GT:GQ 46,0,38:4:0:0/1:40 chr11 7063755 . C T 99 . DP=41;AF1=1;CI95=1,1;DP4=0,0,10,6;MQ=47 PL:DP:SP:GT:GQ 200,48,0:16:0:1/1:99 chr11 7065289 . C A 63.8 . DP=13;AF1=0.95;CI95=0.5,1;DP4=0,1,0,11;MQ=48;PV4=1,0.028,0.2,1 PL:DP:SP:GT:GQ 92,0,0:12:0:1/1:10 chr11 7111153 . C A 52 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=3,2,0,6;MQ=48;PV4=0.061,0.22,0.011,1 PL:DP:SP:GT:GQ 82,0,107:11:12:0/1:85 chr11 7324475 . T C 61.3 . DP=37;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=48 PL:DP:SP:GT:GQ 94,15,0:5:0:1/1:75 chr11 7662732 . C T 99 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=8,21,6,7;MQ=48;PV4=0.3,0.0024,1.5e-32,1 PL:DP:SP:GT:GQ 250,0,255:42:5:0/1:99 chr11 7686596 . G A 79.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=45 PL:DP:SP:GT:GQ 112,15,0:5:0:1/1:75 chr11 7687669 . A C 19 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 chr11 7687715 . T C 91.1 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=47 PL:DP:SP:GT:GQ 124,18,0:6:0:1/1:90 chr11 7689633 . A C 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 chr11 8016730 . T C 40 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=0,21,2,4;MQ=49;PV4=0.043,9.1e-06,2e-05,1 PL:DP:SP:GT:GQ 70,0,237:27:14:0/1:73 chr11 8118472 . T C 95 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=46 PL:DP:SP:GT:GQ 128,27,0:9:0:1/1:99 chr11 8119063 . A G 63.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 96,18,0:6:0:1/1:90 chr11 8122234 . G A 3.02 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 chr11 8528082 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 chr11 8735662 . G A 18.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,0.049,0.0033,1 PL:DP:SP:GT:GQ 48,0,88:6:0:0/1:51 chr11 8942999 . G A 99 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=10,8,16,11;MQ=47;PV4=1,1e-05,2.7e-08,1 PL:DP:SP:GT:GQ 255,0,255:45:0:0/1:99 chr11 8948680 . A T 97 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=2,11,0,15;MQ=48;PV4=0.21,5.2e-12,9.2e-05,1 PL:DP:SP:GT:GQ 127,0,255:28:7:0/1:99 chr11 8950877 . G A 3.54 . DP=12;AF1=0.4998;CI95=0.5,0.5;DP4=3,2,2,0;MQ=48;PV4=1,0.1,0,1 PL:DP:SP:GT:GQ 31,0,161:7:0:0/1:34 chr11 9052423 . A C 99 . DP=19;AF1=1;CI95=1,1;DP4=0,0,3,8;MQ=48 PL:DP:SP:GT:GQ 167,33,0:11:0:1/1:99 chr11 9229146 . C T 34 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=7,0,0,8;MQ=49;PV4=0.00016,5e-10,8.6e-05,0.26 PL:DP:SP:GT:GQ 64,0,181:15:38:0/1:67 chr11 9715853 . T G 17.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=3,2,0,5;MQ=47;PV4=0.17,0.1,0.0038,1 PL:DP:SP:GT:GQ 47,0,112:10:8:0/1:50 chr11 9754221 . C T 99 . DP=6;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,0,5;MQ=44;PV4=1,0,0,0.25 PL:DP:SP:GT:GQ 136,0,32:6:0:0/1:35 chr11 9875353 . G T 99 . DP=8;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=42 PL:DP:SP:GT:GQ 146,21,0:7:0:1/1:84 chr11 9980501 . T C 45 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=2,9,2,7;MQ=50;PV4=1,5.2e-09,0.16,1 PL:DP:SP:GT:GQ 75,0,255:20:0:0/1:78 chr11 10024311 . A G 46 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,15;MQ=49;PV4=1,3e-10,0.13,0.35 PL:DP:SP:GT:GQ 76,0,173:23:0:0/1:79 chr11 10508716 . G C 19.1 . DP=10;AF1=0.5008;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 49,0,25:5:0:0/1:28 chr11 10518521 . C T 99 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=2,17,4,15;MQ=49;PV4=0.66,9.2e-11,0.00015,0.31 PL:DP:SP:GT:GQ 188,0,255:38:2:0/1:99 chr11 10518585 . A G 24 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,7;MQ=50;PV4=1,1.6e-08,0.07,1 PL:DP:SP:GT:GQ 54,0,219:18:0:0/1:57 chr11 10521850 . G A 67 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=39 PL:DP:SP:GT:GQ 100,24,0:8:0:1/1:96 chr11 10526060 . C T 9.31 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 chr11 10786142 . C T 30 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=7,10,3,3;MQ=49;PV4=1,0.00029,0.019,1 PL:DP:SP:GT:GQ 60,0,255:23:0:0/1:63 chr11 10822350 . C T 99 . DP=29;AF1=1;CI95=1,1;DP4=0,1,2,22;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 175,58,0:25:0:1/1:99 chr11 10823815 . C T 99 . DP=46;AF1=1;CI95=1,1;DP4=1,0,29,8;MQ=47;PV4=1,0.18,0.012,1 PL:DP:SP:GT:GQ 255,83,0:38:0:1/1:99 chr11 10828490 . TAA TAAA 99 . INDEL;DP=16;AF1=1;CI95=1,1;DP4=0,0,0,14;MQ=50 PL:DP:SP:GT:GQ 189,42,0:14:0:1/1:99 chr11 11158985 . TCAAA TCAAAACAAA 4.42 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,1,2,0;MQ=50;PV4=1,0.28,1,1 PL:DP:SP:GT:GQ 40,0,56:4:0:0/1:43 chr11 11158986 . CA CAGAAGA 78.5 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,1,3,1;MQ=50;PV4=1,0.4,1,1 PL:DP:SP:GT:GQ 116,0,81:6:0:0/1:84 chr11 11171659 . T C 19.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 chr11 11314538 . C T 88 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=6,1,12,0;MQ=47;PV4=0.37,0.0075,0.005,1 PL:DP:SP:GT:GQ 118,0,158:19:0:0/1:99 chr11 11348828 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 chr11 11373633 . GG GGTG 3.25 . INDEL;DP=8;AF1=0.5002;CI95=0.5,0.5;DP4=2,1,1,0;MQ=46;PV4=1,1,1,0.14 PL:DP:SP:GT:GQ 38,0,31:4:0:0/1:33 chr11 11374013 . CAAT C 7.35 . INDEL;DP=3;AF1=0.5005;CI95=0.5,0.5;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,27:2:0:0/1:30 chr11 11905993 . C T 32.5 . DP=12;AF1=1;CI95=0.5,1;DP4=1,0,9,0;MQ=50;PV4=1,1.3e-06,1,1 PL:DP:SP:GT:GQ 64,7,0:10:0:1/1:57 chr11 12265542 . A G 99 . DP=54;AF1=0.5;CI95=0.5,0.5;DP4=13,16,14,6;MQ=47;PV4=0.14,0.00068,2.5e-22,1 PL:DP:SP:GT:GQ 255,0,255:49:8:0/1:99 chr11 12313887 . C G 49 . DP=29;AF1=0.5013;CI95=0.5,0.5;DP4=0,1,0,7;MQ=49;PV4=1,0.0027,0.26,1 PL:DP:SP:GT:GQ 79,0,23:8:0:0/1:26 chr11 12315186 . G A 28 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=6,1,2,2;MQ=49;PV4=0.49,0.011,3.9e-07,1 PL:DP:SP:GT:GQ 58,0,197:11:3:0/1:61 chr11 12315848 . C T 70 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=1,6,2,6;MQ=49;PV4=1,2.7e-06,0.007,1 PL:DP:SP:GT:GQ 100,0,205:15:0:0/1:99 chr11 12315891 . G A 90 . DP=12;AF1=1;CI95=1,1;DP4=0,0,1,10;MQ=49 PL:DP:SP:GT:GQ 123,33,0:11:0:1/1:99 chr11 12345459 . C T 99 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=43 PL:DP:SP:GT:GQ 149,15,0:5:0:1/1:75 chr11 12379792 . G C 4.61 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 chr11 13402672 . A C 18.1 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,1,4,0;MQ=48;PV4=0.33,0.1,0.19,1 PL:DP:SP:GT:GQ 48,0,52:6:0:0/1:50 chr11 14532338 . C T 95.3 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=45 PL:DP:SP:GT:GQ 128,15,0:5:0:1/1:75 chr11 14540671 . A G 13.2 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 45,9,0:3:0:1/1:63 chr11 15170686 . G A 61 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=9,3,11,0;MQ=49;PV4=0.22,3.2e-07,0.037,1 PL:DP:SP:GT:GQ 91,0,255:23:7:0/1:94 chr11 15199957 . T C 17.1 . DP=20;AF1=0.5016;CI95=0.5,0.5;DP4=0,2,0,6;MQ=50;PV4=1,0.015,0.3,1 PL:DP:SP:GT:GQ 47,0,22:8:0:0/1:25 chr11 17073813 . TC T 39.6 . INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=31 PL:DP:SP:GT:GQ 80,18,0:6:0:1/1:90 chr11 17096059 . A G 47.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 80,15,0:5:0:1/1:75 chr11 17172133 . T C 99 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=2,18,5,8;MQ=49;PV4=0.084,1.6e-10,0.012,1 PL:DP:SP:GT:GQ 131,0,255:33:11:0/1:99 chr11 17250019 . G T,C 9.49 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=44 PL:DP:SP:GT:GQ 41,9,40,0,1,40:4:0:1/1:63 chr11 17332571 . C G 32 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=2,4,0,3;MQ=48;PV4=0.5,0.23,0.0033,0.44 PL:DP:SP:GT:GQ 62,0,168:9:3:0/1:65 chr11 17408630 . C T 99 . DP=36;AF1=1;CI95=1,1;DP4=1,0,21,12;MQ=44;PV4=1,1,0.0029,1 PL:DP:SP:GT:GQ 255,71,0:34:0:1/1:99 chr11 17418477 . C A 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,13,5;MQ=49 PL:DP:SP:GT:GQ 190,54,0:18:0:1/1:99 chr11 17436936 . A G,C 83 . DP=12;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=47 PL:DP:SP:GT:GQ 116,30,102,0,5,102:11:0:1/1:99 chr11 17491571 . C T 19.1 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=49;PV4=1,0,0,0.009 PL:DP:SP:GT:GQ 49,0,107:7:0:0/1:52 chr11 17505652 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 chr11 17981047 . C T 99 . DP=42;AF1=1;CI95=1,1;DP4=2,0,5,26;MQ=44;PV4=0.04,1,0.19,0.026 PL:DP:SP:GT:GQ 255,51,0:33:14:1/1:99 chr11 18047255 . G T 16.1 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=0,21,1,11;MQ=50;PV4=0.36,2.3e-13,0.095,1 PL:DP:SP:GT:GQ 46,0,243:33:0:0/1:49 chr11 18105302 . T C 73 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=0,14,0,8;MQ=48;PV4=1,3e-05,1e-08,1 PL:DP:SP:GT:GQ 103,0,231:22:0:0/1:99 chr11 18158993 . T C 99 . DP=39;AF1=1;CI95=1,1;DP4=0,0,20,9;MQ=49 PL:DP:SP:GT:GQ 234,87,0:29:0:1/1:99 chr11 18195051 . T C 16.3 . DP=33;AF1=0.5263;CI95=0.5,1;DP4=0,1,0,3;MQ=49;PV4=1,1,0.28,1 PL:DP:SP:GT:GQ 46,0,10:4:0:0/1:13 chr11 18231348 . G T 6.2 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=49;PV4=1,0.38,0.28,0.13 PL:DP:SP:GT:GQ 35,0,37:6:0:0/1:36 chr11 18253176 . C T 99 . DP=29;AF1=1;CI95=1,1;DP4=1,1,8,15;MQ=45;PV4=1,1,0.011,1 PL:DP:SP:GT:GQ 255,25,0:25:0:1/1:99 chr11 18267463 . A G 65 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=2,0,6,1;MQ=48;PV4=1,0.00017,0.11,1 PL:DP:SP:GT:GQ 95,0,61:9:0:0/1:64 chr11 18317458 . T A 33 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=8,0,6,0;MQ=49;PV4=1,0.0011,0.052,1 PL:DP:SP:GT:GQ 63,0,186:14:0:0/1:66 chr11 18317699 . C T 48 . DP=9;AF1=0.5001;CI95=0.5,0.5;DP4=0,2,0,4;MQ=47;PV4=1,1,0.099,0.24 PL:DP:SP:GT:GQ 78,0,34:6:0:0/1:37 chr11 18361187 . T C 19.1 . DP=16;AF1=0.5001;CI95=0.5,0.5;DP4=0,2,0,3;MQ=47;PV4=1,0.43,0.16,0.09 PL:DP:SP:GT:GQ 49,0,34:5:0:0/1:37 chr11 18427099 . C A 4.13 . DP=23;AF1=0.4998;CI95=0.5,0.5;DP4=8,2,0,5;MQ=48;PV4=0.007,0.023,0.0011,0.16 PL:DP:SP:GT:GQ 32,0,206:15:22:0/1:35 chr11 18467821 . T C 62 . DP=29;AF1=1;CI95=0.5,1;DP4=0,1,10,0;MQ=47;PV4=0.091,0.4,0.12,1 PL:DP:SP:GT:GQ 94,9,0:11:0:1/1:63 chr11 18732426 . T G 21.5 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 54,12,0:4:0:1/1:72 chr11 18735947 . T C 78 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=12,13,10,2;MQ=49;PV4=0.073,3.2e-07,2.2e-09,1 PL:DP:SP:GT:GQ 108,0,255:37:11:0/1:99 chr11 18738281 . C T 99 . DP=64;AF1=0.5;CI95=0.5,0.5;DP4=15,17,13,16;MQ=49;PV4=1,8.2e-23,3.7e-07,0.27 PL:DP:SP:GT:GQ 166,0,255:61:0:0/1:99 chr11 18754679 . A G 35 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=8,0,5,0;MQ=49;PV4=1,0.00097,0.0028,0.27 PL:DP:SP:GT:GQ 65,0,190:13:0:0/1:68 chr11 18893056 . T A 37.5 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 70,12,0:4:0:1/1:72 chr11 18994005 . T C 22.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 54,6,0:2:0:1/1:49 chr11 19256250 . C T 81 . DP=25;AF1=1;CI95=1,1;DP4=0,0,22,0;MQ=49 PL:DP:SP:GT:GQ 114,66,0:22:0:1/1:99 chr11 19970558 . T C 96.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=44 PL:DP:SP:GT:GQ 129,15,0:5:0:1/1:75 chr11 19970579 . C T 3.02 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 chr11 20099112 . A T 99 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=8,6,6,3;MQ=48;PV4=1,0.0066,9.9e-06,0.18 PL:DP:SP:GT:GQ 186,0,255:23:0:0/1:99 chr11 20101704 . C T 62 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=4,6,5,3;MQ=49;PV4=0.64,4.2e-08,0.022,1 PL:DP:SP:GT:GQ 92,0,255:18:2:0/1:95 chr11 20101744 . C A 58.1 . DP=10;AF1=0.5163;CI95=0.5,1;DP4=0,1,2,2;MQ=47;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 88,0,12:5:0:0/1:15 chr11 20112649 . G A 39 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=48;PV4=1,0.18,0.005,1 PL:DP:SP:GT:GQ 69,0,132:10:0:0/1:72 chr11 20119160 . G A 3.54 . DP=50;AF1=0.4998;CI95=0.5,0.5;DP4=4,23,9,0;MQ=50;PV4=7.6e-06,2.3e-07,0.00014,1 PL:DP:SP:GT:GQ 31,0,255:36:51:0/1:34 chr11 20124914 . A C 99 . DP=59;AF1=1;CI95=1,1;DP4=0,0,26,23;MQ=49 PL:DP:SP:GT:GQ 209,148,0:49:0:1/1:99 chr11 20129075 . G A 29 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=4,0,2,0;MQ=48;PV4=1,1,0,1 PL:DP:SP:GT:GQ 59,0,96:6:0:0/1:62 chr11 20403825 . A T 30 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 62,9,0:3:0:1/1:63 chr11 20404757 . T C 22.2 . DP=21;AF1=0.5263;CI95=0.5,1;DP4=0,1,0,4;MQ=49;PV4=1,0.22,0.26,1 PL:DP:SP:GT:GQ 52,0,10:5:0:0/1:13 chr11 20419028 . T C 49 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=45 PL:DP:SP:GT:GQ 81,9,0:3:0:1/1:63 chr11 20419110 . A G 24 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,3,4,0;MQ=48;PV4=0.029,0.035,0.048,1 PL:DP:SP:GT:GQ 54,0,63:7:15:0/1:56 chr11 20529886 . G A 99 . DP=33;AF1=1;CI95=1,1;DP4=0,0,5,6;MQ=48 PL:DP:SP:GT:GQ 168,33,0:11:0:1/1:99 chr11 20623156 . C G 45.5 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=49 PL:DP:SP:GT:GQ 78,12,0:4:0:1/1:72 chr11 20639400 . A G 99 . DP=49;AF1=1;CI95=1,1;DP4=0,0,11,32;MQ=43 PL:DP:SP:GT:GQ 255,129,0:43:0:1/1:99 chr11 20639449 . CTAAG CTAAGTAAG 99 . INDEL;DP=35;AF1=0.5;CI95=0.5,0.5;DP4=4,14,0,9;MQ=50;PV4=0.27,0.49,1,0.45 PL:DP:SP:GT:GQ 157,0,255:27:6:0/1:99 chr11 20639465 . A C 19.1 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=1,13,0,7;MQ=50;PV4=1,1.5e-10,0.081,1 PL:DP:SP:GT:GQ 49,0,255:21:0:0/1:52 chr11 20676253 . T C 6.2 . DP=39;AF1=0.4999;CI95=0.5,0.5;DP4=11,4,3,3;MQ=50;PV4=0.35,0.0006,0.0087,1 PL:DP:SP:GT:GQ 35,0,255:21:5:0/1:38 chr11 20959465 . C A 99 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=0,17,0,13;MQ=46;PV4=1,0.31,4.3e-15,0.45 PL:DP:SP:GT:GQ 171,0,234:30:0:0/1:99 chr11 20959482 . G C 82 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,10;MQ=45;PV4=1,2.7e-07,2.1e-14,1 PL:DP:SP:GT:GQ 112,0,221:22:0:0/1:99 chr11 20981893 . AT ATGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 chr11 21581665 . C T 75.3 . DP=18;AF1=0.543;CI95=0.5,1;DP4=1,0,12,1;MQ=47;PV4=1,7.5e-09,0.037,1 PL:DP:SP:GT:GQ 105,0,8:14:0:0/1:11 chr11 22242729 . T C 99 . DP=17;AF1=0.6671;CI95=0.5,1;DP4=0,2,1,7;MQ=45;PV4=1,1,0.00022,1 PL:DP:SP:GT:GQ 156,0,3:10:0:0/1:5 chr11 22294550 . T G 44 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,7;MQ=49;PV4=1,0.16,0.058,1 PL:DP:SP:GT:GQ 74,0,79:12:0:0/1:76 chr11 23810855 . T C 21.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 53,6,0:2:0:1/1:49 chr11 26067594 . C T 73.1 . DP=7;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=48 PL:DP:SP:GT:GQ 106,21,0:7:0:1/1:84 chr11 26484496 . G C 18.1 . DP=3;AF1=0.504;CI95=0.5,0.5;DP4=1,0,2,0;MQ=46;PV4=1,1,0.14,1 PL:DP:SP:GT:GQ 48,0,18:3:0:0/1:21 chr11 26552702 . T C 65.4 . DP=8;AF1=0.5554;CI95=0.5,1;DP4=1,0,5,0;MQ=46;PV4=1,1,0.085,1 PL:DP:SP:GT:GQ 95,0,7:6:0:0/1:10 chr11 26568966 . A G 99 . DP=58;AF1=0.5;CI95=0.5,0.5;DP4=11,12,19,11;MQ=50;PV4=0.28,1.4e-23,0.07,1 PL:DP:SP:GT:GQ 139,0,255:53:6:0/1:99 chr11 26587133 . T C 99 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=5,16,1,12;MQ=47;PV4=0.37,7.7e-14,1.1e-12,0.42 PL:DP:SP:GT:GQ 200,0,255:34:4:0/1:99 chr11 26619872 . T C 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0,0,0.094 PL:DP:SP:GT:GQ 31,0,41:3:0:0/1:34 chr11 26692742 . G A 99 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=9,20,3,7;MQ=48;PV4=1,0.044,1.7e-09,1 PL:DP:SP:GT:GQ 182,0,255:39:0:0/1:99 chr11 26694979 . A G 5.46 . DP=30;AF1=0.4999;CI95=0.5,0.5;DP4=6,11,4,3;MQ=50;PV4=0.39,8.6e-17,1,1 PL:DP:SP:GT:GQ 34,0,255:24:4:0/1:37 chr11 26702664 . C T 57.1 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=49 PL:DP:SP:GT:GQ 90,21,0:7:0:1/1:84 chr11 27077118 . C T 60 . DP=26;AF1=0.5025;CI95=0.5,0.5;DP4=1,1,2,3;MQ=47;PV4=1,1,0.057,1 PL:DP:SP:GT:GQ 90,0,20:7:0:0/1:23 chr11 27149043 . T G 19.1 . DP=17;AF1=0.5001;CI95=0.5,0.5;DP4=0,2,0,6;MQ=47;PV4=1,0.16,0.23,1 PL:DP:SP:GT:GQ 49,0,33:8:0:0/1:36 chr11 27390089 . T C 84.2 . DP=40;AF1=1;CI95=0.5,1;DP4=1,0,2,7;MQ=48;PV4=0.3,1,0.23,1 PL:DP:SP:GT:GQ 117,16,0:10:0:1/1:80 chr11 27679662 . T C 51.4 . DP=57;AF1=0.5554;CI95=0.5,1;DP4=0,1,2,4;MQ=48;PV4=1,0.17,0.3,1 PL:DP:SP:GT:GQ 81,0,7:7:0:0/1:10 chr11 28057957 . T C 99 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=9,8,4,7;MQ=49;PV4=0.46,8.3e-07,7.8e-05,1 PL:DP:SP:GT:GQ 151,0,255:28:3:0/1:99 chr11 30255185 . C T 90 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=12,11,6,6;MQ=49;PV4=1,1.5e-09,0.00081,0.42 PL:DP:SP:GT:GQ 120,0,255:35:0:0/1:99 chr11 30352473 . CGG CAGGG 7.35 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,41:2:0:0/1:42 chr11 31653956 . C A 47.4 . DP=33;AF1=0.5554;CI95=0.5,1;DP4=0,2,1,7;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 77,0,7:10:0:0/1:10 chr11 31903485 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 chr11 32118925 . A G 32 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 64,9,0:3:0:1/1:63 chr11 32617537 . A T 28 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=2,7,8,0;MQ=49;PV4=0.0023,1.4e-06,0.029,1 PL:DP:SP:GT:GQ 58,0,239:17:26:0/1:61 chr11 32874926 . G A 64 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=5,0,6,2;MQ=49;PV4=0.49,7.6e-06,0.058,1 PL:DP:SP:GT:GQ 94,0,140:13:3:0/1:97 chr11 32954344 . G A 95 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=11,10,6,14;MQ=50;PV4=0.21,9.3e-17,0.28,1 PL:DP:SP:GT:GQ 125,0,255:41:7:0/1:99 chr11 33360886 . ATTTT ATTT 99 . INDEL;DP=29;AF1=1;CI95=1,1;DP4=1,0,19,4;MQ=50;PV4=1,0.3,1,1 PL:DP:SP:GT:GQ 173,47,0:24:0:1/1:99 chr11 33882427 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 chr11 34113717 . C T 9.53 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 chr11 34152396 . A G 7.8 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=8,3,0,4;MQ=49;PV4=0.026,0.0046,4.3e-08,0.11 PL:DP:SP:GT:GQ 37,0,255:15:16:0/1:40 chr11 34152939 . T C,A 99 . DP=24;AF1=1;CI95=1,1;DP4=0,0,5,13;MQ=47 PL:DP:SP:GT:GQ 236,51,225,0,28,225:18:0:1/1:99 chr11 34158411 . A G 99 . DP=25;AF1=1;CI95=0.5,1;DP4=0,2,5,16;MQ=48;PV4=1,0.19,0.15,1 PL:DP:SP:GT:GQ 195,15,0:23:0:1/1:75 chr11 34158431 . T C 14.7 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=48 PL:DP:SP:GT:GQ 47,12,0:4:0:1/1:72 chr11 34176214 . A G 55.1 . DP=20;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=48 PL:DP:SP:GT:GQ 88,21,0:7:0:1/1:84 chr11 34356694 . G A 8.64 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,1;MQ=49;PV4=1,0.34,0.048,1 PL:DP:SP:GT:GQ 38,0,50:4:0:0/1:41 chr11 34938265 . C T 18.2 . DP=17;AF1=0.5128;CI95=0.5,0.5;DP4=1,1,1,2;MQ=49;PV4=1,1,0.0062,1 PL:DP:SP:GT:GQ 48,0,13:5:0:0/1:16 chr11 35223158 . T C 98 . DP=16;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=48 PL:DP:SP:GT:GQ 131,36,0:12:0:1/1:99 chr11 35229673 . T C 85 . DP=43;AF1=1;CI95=1,1;DP4=1,0,33,3;MQ=50;PV4=1,0.00042,0.37,1 PL:DP:SP:GT:GQ 118,84,0:37:0:1/1:99 chr11 35453796 . GCCC GCC 19.3 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 58,6,0:2:0:1/1:49 chr11 35859466 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 chr11 36057626 . G A 99 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=8,0,9,2;MQ=46;PV4=0.49,1.1e-05,7.4e-10,1 PL:DP:SP:GT:GQ 237,0,188:19:3:0/1:99 chr11 36595600 . A G 58 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=5,8,7,7;MQ=50;PV4=0.7,1.2e-12,1,1 PL:DP:SP:GT:GQ 88,0,255:27:2:0/1:91 chr11 36669778 . C T 75 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,9;MQ=48;PV4=1,1.1e-06,2.4e-05,1 PL:DP:SP:GT:GQ 105,0,220:21:0:0/1:99 chr11 37460942 . A T 62.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=48 PL:DP:SP:GT:GQ 95,15,0:5:0:1/1:75 chr11 38469977 . G A 50 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,2;MQ=49;PV4=0.47,6.8e-06,0,1 PL:DP:SP:GT:GQ 80,0,121:10:3:0/1:83 chr11 41794573 . ca cATAa 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 chr11 43348052 . T A 17.1 . DP=16;AF1=0.5005;CI95=0.5,0.5;DP4=3,0,5,0;MQ=49;PV4=1,0.42,1,0.0085 PL:DP:SP:GT:GQ 47,0,27:8:0:0/1:30 chr11 43472895 . G C 45.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=49 PL:DP:SP:GT:GQ 78,15,0:5:0:1/1:75 chr11 43876435 . A G 88 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=1,10,0,17;MQ=49;PV4=0.39,1.6e-07,0.022,1 PL:DP:SP:GT:GQ 118,0,234:28:0:0/1:99 chr11 43919694 . C T,A 29.5 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=47 PL:DP:SP:GT:GQ 68,18,57,6,0,57:5:0:1/1:72 chr11 43919778 . C T 22 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=43 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 chr11 43919786 . C G 19 . DP=29;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 chr11 43920979 . G A 84 . DP=10;AF1=1;CI95=1,1;DP4=0,0,5,3;MQ=50 PL:DP:SP:GT:GQ 117,24,0:8:0:1/1:96 chr11 44080210 . T C 46.5 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=47 PL:DP:SP:GT:GQ 79,12,0:4:0:1/1:72 chr11 44089161 . G A 96.3 . DP=18;AF1=0.5336;CI95=0.5,1;DP4=1,0,6,0;MQ=44;PV4=1,1,7.6e-05,1 PL:DP:SP:GT:GQ 126,0,9:7:0:0/1:12 chr11 44104701 . CCTCT CCTCTCT 99 . INDEL;DP=44;AF1=0.5;CI95=0.5,0.5;DP4=11,6,17,3;MQ=50;PV4=0.25,1,1,1 PL:DP:SP:GT:GQ 255,0,255:37:6:0/1:99 chr11 44129500 . C G 12.3 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=4,4,0,5;MQ=49;PV4=0.1,0.0016,0.34,0.41 PL:DP:SP:GT:GQ 42,0,230:13:10:0/1:45 chr11 44289312 . C G 30 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=45;PV4=1,0.17,0.055,1 PL:DP:SP:GT:GQ 60,0,78:4:0:0/1:63 chr11 44297054 . T C 36.5 . DP=32;AF1=0.5718;CI95=0.5,1;DP4=0,1,3,2;MQ=49;PV4=1,0.25,0.31,1 PL:DP:SP:GT:GQ 66,0,6:6:0:0/1:8 chr11 44959213 . C T 83 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,5,1,6;MQ=47;PV4=1,8.3e-07,0.02,0.16 PL:DP:SP:GT:GQ 113,0,147:12:0:0/1:99 chr11 45877529 . A G 33.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 chr11 45925494 . G T 20 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=13,0,5,0;MQ=48;PV4=1,0.054,0.0012,1 PL:DP:SP:GT:GQ 50,0,188:18:0:0/1:53 chr11 45926445 . T C 42 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=6,17,2,8;MQ=50;PV4=1,9.7e-08,0.013,1 PL:DP:SP:GT:GQ 72,0,255:33:0:0/1:75 chr11 45935384 . A G 99 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=3,5,1,7;MQ=48;PV4=0.57,2.2e-08,1.9e-06,0.12 PL:DP:SP:GT:GQ 141,0,255:16:2:0/1:99 chr11 45937267 . C T 99 . DP=26;AF1=1;CI95=1,1;DP4=1,1,7,16;MQ=44;PV4=1,1,3.1e-09,1 PL:DP:SP:GT:GQ 255,38,0:25:0:1/1:99 chr11 45944994 . GC GCC 60.5 . INDEL;DP=22;AF1=0.5;CI95=0.5,0.5;DP4=11,0,7,0;MQ=50;PV4=1,0.27,0.11,0.16 PL:DP:SP:GT:GQ 98,0,131:18:0:0/1:99 chr11 45959669 . C T 13 . DP=22;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 chr11 46001229 . G C 87 . DP=34;AF1=1;CI95=1,1;DP4=0,0,26,2;MQ=50 PL:DP:SP:GT:GQ 120,84,0:28:0:1/1:99 chr11 46105688 . G A 41.1 . DP=27;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=50 PL:DP:SP:GT:GQ 74,21,0:7:0:1/1:84 chr11 46392825 . C G 89 . DP=26;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=48 PL:DP:SP:GT:GQ 122,33,0:11:0:1/1:99 chr11 46702920 . T C 14.7 . DP=43;AF1=0.5718;CI95=0.5,1;DP4=0,1,2,1;MQ=49;PV4=1,1,0.24,0.18 PL:DP:SP:GT:GQ 44,0,6:4:0:0/1:8 chr11 46722731 . T C 21 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 53,9,0:3:0:1/1:63 chr11 46897972 . G C 3.01 . DP=8;AF1=0.4997;CI95=0.5,0.5;DP4=5,0,2,0;MQ=49;PV4=1,0.28,0.0064,1 PL:DP:SP:GT:GQ 30,0,85:7:0:0/1:33 chr11 46914583 . T C 33.5 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=48 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 chr11 46914598 . A G 99 . DP=17;AF1=1;CI95=0.5,1;DP4=0,1,6,3;MQ=45;PV4=0.4,1,0.075,1 PL:DP:SP:GT:GQ 192,12,0:10:0:1/1:72 chr11 47182774 . G T 27.5 . DP=14;AF1=0.5718;CI95=0.5,1;DP4=0,1,0,5;MQ=48;PV4=1,0.26,0.26,0.49 PL:DP:SP:GT:GQ 57,0,6:6:0:0/1:8 chr11 47188314 . T C 8.87 . DP=22;AF1=0.5336;CI95=0.5,1;DP4=0,1,0,3;MQ=49;PV4=1,0.34,0.29,1 PL:DP:SP:GT:GQ 38,0,9:4:0:0/1:12 chr11 47238522 . T C 99 . DP=48;AF1=1;CI95=1,1;DP4=1,0,4,7;MQ=48;PV4=0.42,1,0.31,1 PL:DP:SP:GT:GQ 143,19,0:12:0:1/1:76 chr11 47260272 . T C 12 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 chr11 47269159 . T C 17.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 chr11 47270255 . C T 30 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 62,9,0:3:0:1/1:63 chr11 47282024 . C T 76 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,1,3,3;MQ=48;PV4=0.57,0.00082,0.037,0.24 PL:DP:SP:GT:GQ 106,0,141:10:2:0/1:99 chr11 47305669 . T G 9.53 . DP=15;AF1=0.5012;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.49,0.25,1 PL:DP:SP:GT:GQ 39,0,23:5:0:0/1:26 chr11 47317042 . T C 47 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=5,0,7,0;MQ=49;PV4=1,0.22,0.026,0.018 PL:DP:SP:GT:GQ 77,0,67:12:0:0/1:70 chr11 47331116 . T C 86.1 . DP=64;AF1=1;CI95=1,1;DP4=0,1,2,11;MQ=49;PV4=1,0.33,0.24,1 PL:DP:SP:GT:GQ 119,21,0:14:0:1/1:84 chr11 47345100 . T C 31.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 63,6,0:2:0:1/1:49 chr11 47350553 . G C 73 . DP=33;AF1=1;CI95=1,1;DP4=1,0,18,0;MQ=48;PV4=1,0.22,0.21,1 PL:DP:SP:GT:GQ 106,32,0:19:0:1/1:99 chr11 47432034 . G C 35 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,11;MQ=50;PV4=1,2.3e-12,0.17,1 PL:DP:SP:GT:GQ 65,0,190:19:0:0/1:68 chr11 47603685 . G C 21 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=6,7,0,6;MQ=48;PV4=0.11,0.045,0.26,1 PL:DP:SP:GT:GQ 51,0,246:19:10:0/1:54 chr11 47640355 . C T 73.1 . DP=11;AF1=0.508;CI95=0.5,0.5;DP4=1,0,8,0;MQ=46;PV4=1,0.066,0.16,1 PL:DP:SP:GT:GQ 103,0,15:9:0:0/1:18 chr11 47640367 . T A 16.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,3,5,0;MQ=48;PV4=0.18,4.8e-05,0.016,1 PL:DP:SP:GT:GQ 46,0,208:11:7:0/1:49 chr11 47736314 . C G 46 . DP=12;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=50 PL:DP:SP:GT:GQ 79,24,0:8:0:1/1:96 chr11 47776047 . G A 52.3 . DP=41;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=48 PL:DP:SP:GT:GQ 85,15,0:5:0:1/1:75 chr11 47776283 . C T 34 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=49;PV4=1,0.019,0.009,1 PL:DP:SP:GT:GQ 64,0,156:10:0:0/1:67 chr11 47813436 . C T 48 . DP=9;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=50 PL:DP:SP:GT:GQ 81,24,0:8:0:1/1:96 chr11 47834346 . G A 37 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=49;PV4=1,0.00022,0.24,1 PL:DP:SP:GT:GQ 67,0,104:8:0:0/1:70 chr11 47834592 . G A 73 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=49 PL:DP:SP:GT:GQ 106,33,0:11:0:1/1:99 chr11 47837638 . G A 62.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=46 PL:DP:SP:GT:GQ 95,15,0:5:0:1/1:75 chr11 47857253 . T C 99 . DP=75;AF1=0.5;CI95=0.5,0.5;DP4=24,19,12,14;MQ=49;PV4=0.47,1.5e-13,4.2e-07,1 PL:DP:SP:GT:GQ 208,0,255:69:3:0/1:99 chr11 48181721 . G T 20 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 52,9,0:3:0:1/1:63 chr11 48238421 . T G 93.1 . DP=49;AF1=1;CI95=1,1;DP4=0,0,5,2;MQ=48 PL:DP:SP:GT:GQ 126,21,0:7:0:1/1:84 chr11 48266582 . A C 99 . DP=19;AF1=1;CI95=1,1;DP4=0,0,15,0;MQ=46 PL:DP:SP:GT:GQ 164,45,0:15:0:1/1:99 chr11 48267589 . A G 99 . DP=45;AF1=1;CI95=1,1;DP4=0,0,1,38;MQ=46 PL:DP:SP:GT:GQ 213,117,0:39:0:1/1:99 chr11 48285842 . A G 14.2 . DP=50;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,2,1;MQ=50;PV4=1,0.34,0.25,1 PL:DP:SP:GT:GQ 44,0,32:5:0:0/1:35 chr11 48328644 . C T 99 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=4,19,2,5;MQ=49;PV4=0.6,0.00023,2.7e-12,1 PL:DP:SP:GT:GQ 134,0,255:30:2:0/1:99 chr11 48346916 . G C 17.1 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=9,24,2,7;MQ=48;PV4=1,0.00015,0.00059,1 PL:DP:SP:GT:GQ 47,0,255:42:0:0/1:50 chr11 48347140 . T C 47 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=48;PV4=1,0.21,0.0028,1 PL:DP:SP:GT:GQ 77,0,134:10:0:0/1:80 chr11 48347267 . T C 46 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=11,2,8,0;MQ=49;PV4=0.5,3.2e-08,1.1e-08,1 PL:DP:SP:GT:GQ 76,0,255:21:3:0/1:79 chr11 48367398 . C A 8.64 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=47;PV4=1,0.071,0.35,1 PL:DP:SP:GT:GQ 38,0,82:6:0:0/1:41 chr11 48387490 . G A 56 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,5,1,5;MQ=49;PV4=1,8.1e-05,0.017,1 PL:DP:SP:GT:GQ 86,0,184:12:0:0/1:89 chr11 48928633 . A G 33 . DP=10;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=15 PL:DP:SP:GT:GQ 66,30,0:10:0:1/1:99 chr11 49194894 . G A 76.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=45 PL:DP:SP:GT:GQ 109,15,0:5:0:1/1:75 chr11 49195090 . T C 83.5 . DP=6;AF1=0.9998;CI95=0.5,1;DP4=0,1,0,4;MQ=45;PV4=1,1,0.00061,1 PL:DP:SP:GT:GQ 113,2,0:5:0:1/1:37 chr11 49227620 . A G 83.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=46 PL:DP:SP:GT:GQ 116,21,0:7:0:1/1:84 chr11 49431337 . T G 36.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=44 PL:DP:SP:GT:GQ 69,12,0:4:0:1/1:72 chr11 49597799 . C T 99 . DP=7;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=46 PL:DP:SP:GT:GQ 139,21,0:7:0:1/1:84 chr11 49974371 . G A 11.1 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=30 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 chr11 50228063 . T C 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,6,9;MQ=49 PL:DP:SP:GT:GQ 177,45,0:15:0:1/1:99 chr11 55198310 . A G 44 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=43 PL:DP:SP:GT:GQ 76,9,0:3:0:1/1:63 chr11 55245698 . G A 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,3,10;MQ=31 PL:DP:SP:GT:GQ 166,39,0:13:0:1/1:99 chr11 55432719 . C G 66 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=6,2,0,8;MQ=46;PV4=0.007,0.071,0.0016,1 PL:DP:SP:GT:GQ 96,0,154:16:22:0/1:99 chr11 55482401 . G T 20.1 . DP=5;AF1=0.5013;CI95=0.5,0.5;DP4=1,0,3,0;MQ=48;PV4=1,0.047,0.13,1 PL:DP:SP:GT:GQ 50,0,23:4:0:0/1:26 chr11 55541098 . G A 99 . DP=37;AF1=1;CI95=1,1;DP4=1,0,15,15;MQ=47;PV4=1,0.27,0.14,1 PL:DP:SP:GT:GQ 255,62,0:31:0:1/1:99 chr11 55587117 . T A 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,15,6;MQ=45 PL:DP:SP:GT:GQ 255,63,0:21:0:1/1:99 chr11 55587511 . A G 12.6 . DP=33;AF1=0.543;CI95=0.5,1;DP4=0,1,2,1;MQ=49;PV4=1,0.41,0.21,1 PL:DP:SP:GT:GQ 42,0,8:4:0:0/1:11 chr11 55606818 . C T 45 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=17,4,7,4;MQ=49;PV4=0.4,9.3e-08,0.0016,0.5 PL:DP:SP:GT:GQ 75,0,255:32:4:0/1:78 chr11 55681494 . G A 49.2 . DP=27;AF1=0.7303;CI95=0.5,1;DP4=1,0,6,1;MQ=49;PV4=1,0.2,0.28,1 PL:DP:SP:GT:GQ 78,0,2:8:0:0/1:3 chr11 55703339 . A C 15.1 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,1,3,0;MQ=49;PV4=0.4,0.022,0.11,1 PL:DP:SP:GT:GQ 45,0,47:5:0:0/1:46 chr11 55782814 . T G 3.02 . DP=9;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 chr11 55798152 . G A 56.5 . DP=19;AF1=0.9998;CI95=0.5,1;DP4=0,1,2,4;MQ=49;PV4=1,1,0.3,1 PL:DP:SP:GT:GQ 86,2,0:7:0:1/1:37 chr11 55860780 . G A 48.3 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=46 PL:DP:SP:GT:GQ 81,15,0:5:0:1/1:75 chr11 55873024 . A G 92.8 . DP=11;AF1=0.6243;CI95=0.5,1;DP4=1,0,2,4;MQ=45;PV4=0.43,1,0.16,1 PL:DP:SP:GT:GQ 122,0,4:7:0:0/1:6 chr11 55944048 . G C 18.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=50;PV4=1,0.00024,0.18,1 PL:DP:SP:GT:GQ 48,0,129:8:0:0/1:51 chr11 56000403 . C G 99 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=10,4,6,3;MQ=48;PV4=1,0.00025,1.3e-08,1 PL:DP:SP:GT:GQ 152,0,255:23:0:0/1:99 chr11 56086147 . T G 99 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=7,7,10,7;MQ=49;PV4=0.72,8.1e-11,0.086,1 PL:DP:SP:GT:GQ 134,0,255:31:1:0/1:99 chr11 56113516 . T C 95 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=5,1,5,0;MQ=47;PV4=1,0.057,3.7e-09,0.26 PL:DP:SP:GT:GQ 125,0,191:11:0:0/1:99 chr11 56128524 . C T 73.8 . DP=34;AF1=1;CI95=0.5,1;DP4=1,0,3,5;MQ=49;PV4=0.44,1,0.27,1 PL:DP:SP:GT:GQ 106,10,0:9:0:1/1:60 chr11 56237577 . T A 6.98 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=2,2,0,3;MQ=49;PV4=0.43,0.12,1,1 PL:DP:SP:GT:GQ 36,0,83:7:4:0/1:39 chr11 56289213 . T G 8.64 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,2;MQ=48;PV4=0.33,0.028,0.077,1 PL:DP:SP:GT:GQ 38,0,41:3:0:0/1:39 chr11 56468403 . G A 99 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=6,15,2,8;MQ=48;PV4=1,0.0025,2.7e-17,1 PL:DP:SP:GT:GQ 205,0,255:31:0:0/1:99 chr11 56468637 . C T 92 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=6,16,0,14;MQ=49;PV4=0.062,0.033,1.6e-05,0.11 PL:DP:SP:GT:GQ 122,0,255:36:12:0/1:99 chr11 56507816 . A C 18.1 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=5,1,1,4;MQ=45;PV4=0.08,0.00014,0.0056,1 PL:DP:SP:GT:GQ 48,0,180:11:11:0/1:51 chr11 56507838 . A G 99 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=7,2,3,5;MQ=44;PV4=0.15,0.039,0.003,1 PL:DP:SP:GT:GQ 185,0,237:17:8:0/1:99 chr11 56507852 . A G 46 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=5,0,1,4;MQ=43;PV4=0.048,0.15,0.0011,0.12 PL:DP:SP:GT:GQ 76,0,132:10:13:0/1:79 chr11 56508013 . A G 18.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,7,3,2;MQ=41;PV4=0.045,0.18,8.2e-05,1 PL:DP:SP:GT:GQ 48,0,111:12:13:0/1:51 chr11 56508220 . TGAGAG TGAGAGAGAG 85.4 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 125,9,0:3:0:1/1:63 chr11 56510672 . T C 9.31 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 chr11 56756664 . G A 99 . DP=10;AF1=1;CI95=1,1;DP4=0,0,5,5;MQ=47 PL:DP:SP:GT:GQ 197,30,0:10:0:1/1:99 chr11 56950264 . A G 22.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 54,6,0:2:0:1/1:49 chr11 57118385 . C T 23 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=0,10,4,2;MQ=49;PV4=0.0082,0.47,0.00019,1 PL:DP:SP:GT:GQ 53,0,89:16:21:0/1:56 chr11 57147016 . A G 99 . DP=39;AF1=1;CI95=1,1;DP4=0,0,4,7;MQ=48 PL:DP:SP:GT:GQ 150,33,0:11:0:1/1:99 chr11 57148175 . A G,T 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,1,9;MQ=46 PL:DP:SP:GT:GQ 160,27,153,0,10,153:10:0:1/1:99 chr11 57155288 . T C 30.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 62,6,0:2:0:1/1:49 chr11 57184218 . C T 94.1 . DP=7;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=45 PL:DP:SP:GT:GQ 127,21,0:7:0:1/1:84 chr11 57243588 . A G 99 . DP=19;AF1=1;CI95=1,1;DP4=0,0,17,0;MQ=43 PL:DP:SP:GT:GQ 228,51,0:17:0:1/1:99 chr11 57369716 . G A 4.16 . DP=9;AF1=0.5062;CI95=0.5,0.5;DP4=0,1,0,2;MQ=45;PV4=1,0.17,0.42,1 PL:DP:SP:GT:GQ 32,0,16:3:0:0/1:19 chr11 57413943 . C G 29 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,7;MQ=49;PV4=1,3.4e-05,0.16,0.49 PL:DP:SP:GT:GQ 59,0,113:11:0:0/1:62 chr11 57798942 . A G 4.77 . DP=46;AF1=0.4999;CI95=0.5,0.5;DP4=21,8,6,2;MQ=50;PV4=1,1.7e-05,0.0027,0.25 PL:DP:SP:GT:GQ 33,0,255:37:0:0/1:36 chr11 57836248 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 chr11 57958208 . G C 71 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=2,6,11,0;MQ=47;PV4=0.001,0.044,0.0085,1 PL:DP:SP:GT:GQ 101,0,141:19:30:0/1:99 chr11 57982229 . A G 18.1 . DP=9;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,2,1;MQ=49;PV4=1,0.097,0.33,1 PL:DP:SP:GT:GQ 48,0,28:4:0:0/1:31 chr11 57982620 . A G 99 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=4,6,4,10;MQ=47;PV4=0.67,9.8e-06,0.0097,1 PL:DP:SP:GT:GQ 144,0,252:24:2:0/1:99 chr11 57983194 . A G 9.52 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,1;MQ=49;PV4=0.4,0.47,0.0013,1 PL:DP:SP:GT:GQ 39,0,61:5:0:0/1:42 chr11 57995323 . T A,C 11.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:DP:SP:GT:GQ 50,16,40,7,0,40:4:0:1/1:63 chr11 58125620 . T C 54 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=9,0,5,0;MQ=48;PV4=1,0.0001,0.0062,1 PL:DP:SP:GT:GQ 84,0,207:14:0:0/1:87 chr11 58207204 . A G 15.9 . DP=22;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 chr11 58379663 . CGTGTGTGTGTGTGTGTGT CGTGTGTGTGTGTGTGT 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 chr11 58478084 . T C,G 50.4 . DP=40;AF1=0.5554;CI95=0.5,1;DP4=1,0,2,5;MQ=48;PV4=0.37,0.28,0.12,1 PL:DP:SP:GT:GQ 91,11,70,18,0,89:8:0:0/1:10 chr11 58604712 . T C 99 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=16,13,5,4;MQ=49;PV4=1,0.025,1.8e-13,1 PL:DP:SP:GT:GQ 142,0,255:38:0:0/1:99 chr11 59055059 . T G 31 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,0,4,0;MQ=48;PV4=1,0.0011,0.29,0.38 PL:DP:SP:GT:GQ 61,0,57:6:0:0/1:59 chr11 59189405 . T C 71 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=11,0,14,0;MQ=46;PV4=1,2.6e-05,4.2e-06,1 PL:DP:SP:GT:GQ 101,0,189:25:0:0/1:99 chr11 59345601 . A T 21 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=46;PV4=1,1,0.0074,1 PL:DP:SP:GT:GQ 51,0,44:6:0:0/1:46 chr11 59559591 . T G 46.5 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=47 PL:DP:SP:GT:GQ 79,12,0:4:0:1/1:72 chr11 59626571 . A C 10.4 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=3,10,6,0;MQ=50;PV4=0.0031,9.9e-06,0.00072,0.34 PL:DP:SP:GT:GQ 40,0,255:19:25:0/1:43 chr11 59830103 . A G 38 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=5,21,1,19;MQ=50;PV4=0.21,1.8e-27,0.022,0.088 PL:DP:SP:GT:GQ 68,0,255:46:7:0/1:71 chr11 59947252 . C T 99 . DP=19;AF1=1;CI95=1,1;DP4=1,0,17,0;MQ=46;PV4=1,1,0.015,1 PL:DP:SP:GT:GQ 178,36,0:18:0:1/1:99 chr11 59997335 . T C 42.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:DP:SP:GT:GQ 75,15,0:5:0:1/1:75 chr11 60073702 . A T 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,0,14;MQ=47 PL:DP:SP:GT:GQ 148,42,0:14:0:1/1:99 chr11 60152563 . T A 99 . DP=23;AF1=1;CI95=1,1;DP4=0,1,15,5;MQ=46;PV4=0.29,0.44,0.19,1 PL:DP:SP:GT:GQ 214,37,0:21:0:1/1:99 chr11 60152584 . G A 99 . DP=28;AF1=1;CI95=0.5,1;DP4=1,1,9,14;MQ=47;PV4=1,0.012,0.11,1 PL:DP:SP:GT:GQ 186,15,0:25:0:1/1:75 chr11 60157107 . T G 46.1 . DP=22;AF1=1;CI95=1,1;DP4=0,1,0,17;MQ=50;PV4=1,2.4e-07,0.32,1 PL:DP:SP:GT:GQ 79,22,0:18:0:1/1:88 chr11 60164204 . G A 6.2 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,1,1;MQ=47;PV4=1,0.21,1,1 PL:DP:SP:GT:GQ 35,0,48:4:0:0/1:38 chr11 60165352 . ATT A 99 . INDEL;DP=36;AF1=1;CI95=1,1;DP4=1,1,15,15;MQ=50;PV4=1,1,0.4,1 PL:DP:SP:GT:GQ 255,35,0:32:0:1/1:99 chr11 60233614 . T C 13.2 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=8,17,9,0;MQ=49;PV4=0.00093,1e-05,1.2e-05,0.34 PL:DP:SP:GT:GQ 43,0,255:34:30:0/1:46 chr11 60264755 . G A 72 . DP=18;AF1=1;CI95=1,1;DP4=0,0,15,0;MQ=50 PL:DP:SP:GT:GQ 105,45,0:15:0:1/1:99 chr11 60264947 . C T 99 . DP=57;AF1=1;CI95=1,1;DP4=0,1,15,27;MQ=46;PV4=1,1,0.024,1 PL:DP:SP:GT:GQ 255,112,0:43:0:1/1:99 chr11 60265002 . C T 17.1 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=10,8,3,4;MQ=50;PV4=0.67,1.4e-09,0.13,1 PL:DP:SP:GT:GQ 47,0,255:25:2:0/1:50 chr11 60265164 . G A 23 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 chr11 60268679 . G C 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,3,19;MQ=48 PL:DP:SP:GT:GQ 204,66,0:22:0:1/1:99 chr11 60268736 . C A 23 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 chr11 60285575 . A G 99 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=4,2,5,4;MQ=48;PV4=1,0.0015,0.0079,1 PL:DP:SP:GT:GQ 141,0,179:15:0:0/1:99 chr11 60559805 . A G 13.2 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=3,23,3,6;MQ=50;PV4=0.16,4.9e-08,0.017,1 PL:DP:SP:GT:GQ 43,0,255:35:8:0/1:46 chr11 60617646 . T C 27 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=49 PL:DP:SP:GT:GQ 59,9,0:3:0:1/1:63 chr11 60638470 . A G 95 . DP=27;AF1=1;CI95=1,1;DP4=0,0,0,14;MQ=48 PL:DP:SP:GT:GQ 128,42,0:14:0:1/1:99 chr11 60705454 . A G 99 . DP=16;AF1=1;CI95=1,1;DP4=0,0,2,7;MQ=46 PL:DP:SP:GT:GQ 179,27,0:9:0:1/1:99 chr11 60776334 . A G 37 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 69,9,0:3:0:1/1:63 chr11 60783135 . A G 99 . DP=37;AF1=1;CI95=1,1;DP4=0,2,26,4;MQ=49;PV4=0.03,0.014,0.28,1 PL:DP:SP:GT:GQ 147,41,0:32:15:1/1:99 chr11 60892606 . A G 99 . DP=36;AF1=1;CI95=1,1;DP4=0,1,5,26;MQ=47;PV4=1,0.21,1,1 PL:DP:SP:GT:GQ 238,66,0:32:0:1/1:99 chr11 61123965 . A G 58.3 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=46 PL:DP:SP:GT:GQ 91,15,0:5:0:1/1:75 chr11 61252175 . T G 19.1 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=2,4,0,4;MQ=47;PV4=0.47,0.22,0.078,1 PL:DP:SP:GT:GQ 49,0,119:10:3:0/1:52 chr11 61319000 . C G 25 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,4;MQ=48;PV4=1,0.2,0.19,1 PL:DP:SP:GT:GQ 55,0,48:7:0:0/1:50 chr11 61553669 . C A,T 8.33 . DP=9;AF1=0.5939;CI95=0.5,1;DP4=0,1,0,5;MQ=47;PV4=1,1,0.2,0.3 PL:DP:SP:GT:GQ 58,21,31,26,0,44:6:0:0/1:7 chr11 61624414 . T C 47.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:DP:SP:GT:GQ 80,12,0:4:0:1/1:72 chr11 61674913 . G C 11.3 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=4,2,3,0;MQ=49;PV4=0.5,0.1,0.0013,1 PL:DP:SP:GT:GQ 41,0,169:9:3:0/1:44 chr11 61725599 . ATCCTCCTCCTCCTCC ATCCTCCTCCTCCTCCTCCTCC 27.2 . INDEL;DP=21;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 66,6,0:2:0:1/1:49 chr11 61906374 . T C 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,12,6;MQ=43 PL:DP:SP:GT:GQ 255,54,0:18:0:1/1:99 chr11 61916299 . A G 13.2 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=3,2,0,3;MQ=48;PV4=0.2,0.18,0.078,1 PL:DP:SP:GT:GQ 43,0,131:8:7:0/1:46 chr11 62098726 . C T 37 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=1,5,2,5;MQ=47;PV4=1,4.6e-11,1,0.43 PL:DP:SP:GT:GQ 67,0,182:13:0:0/1:70 chr11 62384869 . T C 5.54 . DP=29;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,2,0;MQ=48;PV4=0.33,1,1,1 PL:DP:SP:GT:GQ 34,0,13:3:0:0/1:16 chr11 62520842 . CAT CATAT 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,1;MQ=50;PV4=1,1,1,0.38 PL:DP:SP:GT:GQ 41,0,66:3:0:0/1:44 chr11 62560244 . aa aACa 3.25 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.16 PL:DP:SP:GT:GQ 38,0,67:4:0:0/1:41 chr11 62563353 . G A 16.9 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=47 PL:DP:SP:GT:GQ 48,6,0:2:0:1/1:49 chr11 62652063 . A G 99 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=10,11,9,3;MQ=48;PV4=0.16,0.00041,1.9e-11,1 PL:DP:SP:GT:GQ 153,0,255:33:8:0/1:99 chr11 62747145 . A G 87.1 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=48 PL:DP:SP:GT:GQ 120,18,0:6:0:1/1:90 chr11 62814965 . G A 53.1 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=49 PL:DP:SP:GT:GQ 86,18,0:6:0:1/1:90 chr11 62931484 . T C 99 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=3,4,5,3;MQ=47;PV4=0.62,0.33,1.7e-05,1 PL:DP:SP:GT:GQ 150,0,157:15:2:0/1:99 chr11 62951064 . C A 88 . DP=22;AF1=1;CI95=1,1;DP4=1,0,19,0;MQ=48;PV4=1,0.45,0.28,1 PL:DP:SP:GT:GQ 121,38,0:20:0:1/1:99 chr11 63064970 . T G 40 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=6,8,2,5;MQ=49;PV4=0.66,0.00068,0.0038,1 PL:DP:SP:GT:GQ 70,0,255:21:2:0/1:73 chr11 63313644 . T C 34.2 . DP=20;AF1=0.5207;CI95=0.5,1;DP4=0,1,1,3;MQ=49;PV4=1,0.26,0.27,1 PL:DP:SP:GT:GQ 64,0,11:5:0:0/1:14 chr11 63357919 . C T 99 . DP=14;AF1=1;CI95=1,1;DP4=0,0,1,12;MQ=46 PL:DP:SP:GT:GQ 179,39,0:13:0:1/1:99 chr11 63413962 . aaaataaata aaaata 14.7 . INDEL;DP=3;AF1=0.5064;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 52,0,16:3:0:0/1:19 chr11 63487433 . G C 4.13 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=2,7,2,2;MQ=49;PV4=0.53,0.12,0.11,1 PL:DP:SP:GT:GQ 32,0,178:13:3:0/1:35 chr11 63666536 . G C 53 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=7,14,10,0;MQ=49;PV4=0.00046,0.023,4.3e-06,1 PL:DP:SP:GT:GQ 83,0,255:31:33:0/1:86 chr11 63885588 . C G 7.8 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=5,0,4,0;MQ=48;PV4=1,0.082,0.088,0.32 PL:DP:SP:GT:GQ 37,0,78:9:0:0/1:40 chr11 63990996 . ACCC ACC 99 . INDEL;DP=10;AF1=1;CI95=1,1;DP4=0,0,1,7;MQ=50 PL:DP:SP:GT:GQ 153,24,0:8:0:1/1:96 chr11 64011441 . T C 99 . DP=30;AF1=1;CI95=1,1;DP4=0,0,4,22;MQ=47 PL:DP:SP:GT:GQ 255,78,0:26:0:1/1:99 chr11 64022459 . A G 17.1 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 chr11 64064935 . GC GCCCC,GCTCGTAGAC 6.18 . INDEL;DP=13;AF1=0.5718;CI95=0.5,1;DP4=1,0,2,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 78,36,36,42,0,42:3:0:0/1:8 chr11 64088435 . A G 74.1 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,1,5;MQ=48 PL:DP:SP:GT:GQ 107,18,0:6:0:1/1:90 chr11 64116843 . A C 20 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 52,9,0:3:0:1/1:63 chr11 64419487 . C A 34 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=1,9,11,1;MQ=49;PV4=0.00029,0.26,0.01,1 PL:DP:SP:GT:GQ 64,0,116:22:35:0/1:67 chr11 64496587 . T C 46.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 79,15,0:5:0:1/1:75 chr11 64497161 . C T 19.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 chr11 64503496 . A G 11.1 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 chr11 64536866 . T C 18.1 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=12,6,5,2;MQ=50;PV4=1,9.6e-08,0.0012,1 PL:DP:SP:GT:GQ 48,0,255:25:0:0/1:51 chr11 64572557 . A G 99 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=4,7,6,4;MQ=48;PV4=0.39,2.2e-05,0.00045,0.44 PL:DP:SP:GT:GQ 161,0,255:21:4:0/1:99 chr11 64594490 . A G 11.4 . DP=20;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,2,1;MQ=50;PV4=1,0.093,0.33,1 PL:DP:SP:GT:GQ 41,0,14:4:0:0/1:17 chr11 64598944 . A G 65.4 . DP=21;AF1=1;CI95=0.5,1;DP4=1,0,7,1;MQ=49;PV4=1,1,0.2,1 PL:DP:SP:GT:GQ 98,13,0:9:0:1/1:65 chr11 64608172 . GCCCCCC GCCCCC 3.8 . INDEL;DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,7;MQ=50;PV4=1,1.4e-07,1,1 PL:DP:SP:GT:GQ 39,0,44:15:0:0/1:41 chr11 64622419 . T G 32 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=45 PL:DP:SP:GT:GQ 64,9,0:3:0:1/1:63 chr11 64684570 . T G 31 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=8,5,0,7;MQ=49;PV4=0.015,0.049,0.0077,1 PL:DP:SP:GT:GQ 61,0,231:20:18:0/1:64 chr11 64888116 . G C 21.1 . DP=19;AF1=0.502;CI95=0.5,0.5;DP4=2,0,4,0;MQ=49;PV4=1,1,1,0.11 PL:DP:SP:GT:GQ 51,0,21:6:0:0/1:24 chr11 64898357 . GCC GCCC 99 . INDEL;DP=10;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=50 PL:DP:SP:GT:GQ 166,30,0:10:0:1/1:99 chr11 65144075 . T C 99 . DP=45;AF1=1;CI95=1,1;DP4=0,1,4,34;MQ=48;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 234,99,0:39:0:1/1:99 chr11 65178620 . G A 72 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=43 PL:DP:SP:GT:GQ 104,9,0:3:0:1/1:63 chr11 65480768 . A G 5.46 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,1,0;MQ=46;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 34,0,72:3:0:0/1:37 chr11 65480791 . A G 64.1 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,3,3;MQ=49 PL:DP:SP:GT:GQ 97,18,0:6:0:1/1:90 chr11 65481166 . T C 43.1 . DP=22;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=49 PL:DP:SP:GT:GQ 76,21,0:7:0:1/1:84 chr11 65494987 . C T 46 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=46 PL:DP:SP:GT:GQ 78,9,0:3:0:1/1:63 chr11 65628469 . CAC CACAAAC 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 chr11 65636053 . T C 99 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=9,4,8,2;MQ=48;PV4=0.66,0.18,0.00041,1 PL:DP:SP:GT:GQ 148,0,242:23:2:0/1:99 chr11 65732651 . G A 5.76 . DP=7;AF1=0.5553;CI95=0.5,1;DP4=0,1,0,2;MQ=47;PV4=1,1,1,0.45 PL:DP:SP:GT:GQ 34,0,7:3:0:0/1:10 chr11 65744421 . C T 14.1 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 46,9,0:3:0:1/1:63 chr11 65767153 . A G 75.1 . DP=16;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=47 PL:DP:SP:GT:GQ 108,21,0:7:0:1/1:84 chr11 65771050 . TCACTGAGCACTGAGCA TCACTGAGCA 99 . INDEL;DP=13;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 172,15,0:5:0:1/1:75 chr11 65771060 . CTGAGCAG C 45.5 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=4,1,4,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 83,0,116:9:0:0/1:86 chr11 65771203 . G GGACACCTACC 7.35 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 chr11 65788072 . C T 99 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=45 PL:DP:SP:GT:GQ 139,15,0:5:0:1/1:75 chr11 65983522 . A G 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,15,0;MQ=46 PL:DP:SP:GT:GQ 143,45,0:15:0:1/1:99 chr11 66083129 . T C 24 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,4;MQ=49;PV4=0.43,5.3e-05,0.014,1 PL:DP:SP:GT:GQ 54,0,121:7:0:0/1:57 chr11 66100152 . T C 19 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 chr11 66107674 . A G 99 . DP=25;AF1=1;CI95=1,1;DP4=0,1,2,17;MQ=44;PV4=1,1,0.018,0.035 PL:DP:SP:GT:GQ 255,42,0:20:0:1/1:99 chr11 66240882 . T C 99 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,7,5,4;MQ=48;PV4=0.034,0.0031,2.8e-05,1 PL:DP:SP:GT:GQ 157,0,157:16:15:0/1:99 chr11 66272142 . A G 99 . DP=40;AF1=1;CI95=1,1;DP4=1,0,4,9;MQ=49;PV4=0.36,0.37,0.23,1 PL:DP:SP:GT:GQ 135,21,0:14:0:1/1:84 chr11 66288733 . G C 99 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=11,0,14,2;MQ=49;PV4=0.5,5.3e-08,0.0011,1 PL:DP:SP:GT:GQ 130,0,198:27:3:0/1:99 chr11 66293779 . T C 3.54 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,1;MQ=48;PV4=1,0.5,0,1 PL:DP:SP:GT:GQ 31,0,93:4:0:0/1:34 chr11 66331458 . A G 14.1 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 46,9,0:3:0:1/1:63 chr11 66460527 . C T 3.54 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=4,0,2,0;MQ=49;PV4=1,0.24,0.049,1 PL:DP:SP:GT:GQ 31,0,98:6:0:0/1:34 chr11 66481772 . C A 26 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=6,0,4,0;MQ=48;PV4=1,1,0.00013,1 PL:DP:SP:GT:GQ 56,0,85:10:0:0/1:59 chr11 66617286 . G A 17.1 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,6,3,1;MQ=49;PV4=0.088,0.023,0.054,0.46 PL:DP:SP:GT:GQ 47,0,175:11:11:0/1:50 chr11 66837965 . T C 99 . DP=16;AF1=1;CI95=1,1;DP4=0,0,9,7;MQ=49 PL:DP:SP:GT:GQ 181,48,0:16:0:1/1:99 chr11 67160961 . A G 94 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=11,0,9,0;MQ=48;PV4=1,0.00022,4.9e-07,1 PL:DP:SP:GT:GQ 124,0,211:20:0:0/1:99 chr11 67177279 . G A 6.79 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 chr11 67196544 . C G 91 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,2;MQ=46;PV4=0.46,0.023,0.00036,0.027 PL:DP:SP:GT:GQ 121,0,90:8:3:0/1:93 chr11 67202044 . G A 99 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,4,2;MQ=46 PL:DP:SP:GT:GQ 134,18,0:6:0:1/1:90 chr11 67202156 . C T,A 25.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 61,15,53,3,0,53:5:0:1/1:72 chr11 67254464 . A C 32 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=2,6,6,0;MQ=49;PV4=0.0097,0.005,0.0033,1 PL:DP:SP:GT:GQ 62,0,163:14:20:0/1:65 chr11 67352689 . A G 99 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=7,9,2,13;MQ=47;PV4=0.11,7.6e-06,2.7e-06,1 PL:DP:SP:GT:GQ 188,0,255:31:9:0/1:99 chr11 67430762 . T C 9.6 . DP=4;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,2,0;MQ=45;PV4=0.33,1,0.17,1 PL:DP:SP:GT:GQ 39,0,14:3:0:0/1:17 chr11 67450364 . A G 92 . DP=14;AF1=1;CI95=1,1;DP4=0,0,5,7;MQ=17 PL:DP:SP:GT:GQ 125,36,0:12:0:1/1:99 chr11 67554590 . A G 38.5 . DP=11;AF1=0.8277;CI95=0.5,1;DP4=0,1,2,2;MQ=36;PV4=1,1,1,1 PL:DP:SP:GT:GQ 67,0,1:5:0:1/1:5 chr11 67559770 . C A 96 . DP=16;AF1=1;CI95=1,1;DP4=0,0,3,8;MQ=39 PL:DP:SP:GT:GQ 129,33,0:11:0:1/1:99 chr11 67564197 . T C 76 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=24 PL:DP:SP:GT:GQ 109,27,0:9:0:1/1:99 chr11 67673027 . A G 68.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=42 PL:DP:SP:GT:GQ 101,15,0:5:0:1/1:75 chr11 67799731 . C G 18.1 . DP=39;AF1=0.501;CI95=0.5,0.5;DP4=0,2,4,0;MQ=49;PV4=0.067,0.4,1,1 PL:DP:SP:GT:GQ 48,0,24:6:12:0/1:27 chr11 67814979 . G C 99 . DP=18;AF1=1;CI95=1,1;DP4=0,1,0,17;MQ=48;PV4=1,1,0.22,1 PL:DP:SP:GT:GQ 144,34,0:18:0:1/1:99 chr11 67842369 . C T 48.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=49 PL:DP:SP:GT:GQ 81,21,0:7:0:1/1:84 chr11 67957518 . A T 50.3 . DP=47;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=50 PL:DP:SP:GT:GQ 83,15,0:5:0:1/1:75 chr11 68315798 . C A 20.6 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 53,12,0:4:0:1/1:72 chr11 68455596 . G T 11.3 . DP=13;AF1=0.5012;CI95=0.5,0.5;DP4=0,2,0,4;MQ=49;PV4=1,0.17,0.2,1 PL:DP:SP:GT:GQ 41,0,23:6:0:0/1:26 chr11 68530257 . C T 56 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=1,14,0,11;MQ=48;PV4=1,2e-07,5.9e-07,1 PL:DP:SP:GT:GQ 86,0,244:26:0:0/1:89 chr11 68700814 . A T 6.98 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=1,5,2,0;MQ=48;PV4=0.11,0.21,1.3e-06,1 PL:DP:SP:GT:GQ 36,0,155:8:10:0/1:39 chr11 68748003 . T C 99 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=0,6,5,12;MQ=48;PV4=0.27,1.7e-05,0.019,1 PL:DP:SP:GT:GQ 192,0,128:23:6:0/1:99 chr11 69630978 . G A 6.2 . DP=3;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,1;MQ=49;PV4=1,0,0,1 PL:DP:SP:GT:GQ 35,0,27:3:0:0/1:29 chr11 70201977 . T G 6.98 . DP=23;AF1=0.4999;CI95=0.5,0.5;DP4=0,9,0,4;MQ=48;PV4=1,1,7.8e-05,0.49 PL:DP:SP:GT:GQ 36,0,82:13:0:0/1:39 chr11 70208350 . G A 81.1 . DP=29;AF1=1;CI95=1,1;DP4=0,0,4,3;MQ=48 PL:DP:SP:GT:GQ 114,21,0:7:0:1/1:84 chr11 70332694 . T C 5.46 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=5,0,0,3;MQ=49;PV4=0.018,0.0044,0.34,1 PL:DP:SP:GT:GQ 34,0,144:8:17:0/1:37 chr11 70349061 . A G 99 . DP=45;AF1=1;CI95=1,1;DP4=1,1,4,33;MQ=47;PV4=0.24,1,0.0012,1 PL:DP:SP:GT:GQ 216,69,0:39:6:1/1:99 chr11 70731715 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 chr11 71152461 . A G 63 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=1,11,2,2;MQ=48;PV4=0.14,0.077,6.1e-07,0.27 PL:DP:SP:GT:GQ 93,0,255:16:9:0/1:96 chr11 71169547 . G C 99 . DP=63;AF1=0.5;CI95=0.5,0.5;DP4=14,25,7,11;MQ=49;PV4=1,4.2e-15,0.00023,1 PL:DP:SP:GT:GQ 145,0,255:57:0:0/1:99 chr11 71169648 . A G 41 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=3,13,0,7;MQ=49;PV4=0.53,0.00094,1.1e-07,1 PL:DP:SP:GT:GQ 71,0,255:23:3:0/1:74 chr11 71185357 . G A 7.8 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=49;PV4=1,0.045,0.079,1 PL:DP:SP:GT:GQ 37,0,51:6:0:0/1:40 chr11 71185479 . T C 82 . DP=63;AF1=0.5;CI95=0.5,0.5;DP4=18,22,11,9;MQ=50;PV4=0.59,2.2e-21,0.00045,1 PL:DP:SP:GT:GQ 112,0,255:60:2:0/1:99 chr11 71668362 . CTT CT 71.5 . INDEL;DP=13;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=50 PL:DP:SP:GT:GQ 112,21,0:7:0:1/1:84 chr11 71707465 . T C 99 . DP=14;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=48 PL:DP:SP:GT:GQ 139,36,0:12:0:1/1:99 chr11 71727422 . A C 37 . DP=62;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,1,5;MQ=49;PV4=0.46,0.041,0.22,1 PL:DP:SP:GT:GQ 67,0,34:8:3:0/1:37 chr11 71728908 . AGTCAACG AG 99 . INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,7;MQ=50;PV4=0.22,1,1,1 PL:DP:SP:GT:GQ 189,0,60:9:0:0/1:63 chr11 71941212 . A G 99 . DP=16;AF1=1;CI95=1,1;DP4=0,0,2,13;MQ=49 PL:DP:SP:GT:GQ 148,45,0:15:0:1/1:99 chr11 71941381 . A G 91.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=44 PL:DP:SP:GT:GQ 124,15,0:5:0:1/1:75 chr11 72288650 . TGGGGGG TGGGGG 8.15 . INDEL;DP=15;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 47,9,0:3:0:1/1:63 chr11 72288664 . C T 83 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=48 PL:DP:SP:GT:GQ 116,27,0:9:0:1/1:99 chr11 72292353 . GA GAA 73.7 . INDEL;DP=9;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=50 PL:DP:SP:GT:GQ 114,15,0:5:0:1/1:75 chr11 72293039 . G A 52 . DP=19;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=49 PL:DP:SP:GT:GQ 85,27,0:9:0:1/1:99 chr11 72293602 . A G 99 . DP=45;AF1=1;CI95=1,1;DP4=1,1,8,21;MQ=44;PV4=0.5,1,5.6e-05,1 PL:DP:SP:GT:GQ 255,45,0:31:3:1/1:99 chr11 72295906 . A G 99 . DP=31;AF1=1;CI95=1,1;DP4=0,0,28,1;MQ=49 PL:DP:SP:GT:GQ 149,87,0:29:0:1/1:99 chr11 72326210 . A G 99 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,6;MQ=47;PV4=1,0.00047,7.5e-13,1 PL:DP:SP:GT:GQ 136,0,185:13:0:0/1:99 chr11 72945341 . C T 3.01 . DP=78;AF1=0.4997;CI95=0.5,0.5;DP4=12,17,6,3;MQ=50;PV4=0.26,4.7e-05,0.16,1 PL:DP:SP:GT:GQ 30,0,255:38:6:0/1:33 chr11 73022114 . G T 22 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=9,6,0,7;MQ=49;PV4=0.017,0.0094,0.011,1 PL:DP:SP:GT:GQ 52,0,255:22:18:0/1:55 chr11 73075518 . A C 37 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=4,1,0,6;MQ=49;PV4=0.015,0.029,0.013,1 PL:DP:SP:GT:GQ 67,0,127:11:18:0/1:70 chr11 73101807 . G T 12.3 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,0;MQ=47;PV4=1,0.0097,0,0.17 PL:DP:SP:GT:GQ 42,0,41:3:0:0/1:41 chr11 73670645 . T C 99 . DP=35;AF1=1;CI95=1,1;DP4=0,0,21,9;MQ=46 PL:DP:SP:GT:GQ 255,90,0:30:0:1/1:99 chr11 73681135 . G A 99 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,6,6,4;MQ=47;PV4=0.034,0.026,0.00017,0.28 PL:DP:SP:GT:GQ 174,0,133:16:15:0/1:99 chr11 73689104 . G A 25 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=1,3,2,2;MQ=48;PV4=1,0.0037,1,1 PL:DP:SP:GT:GQ 55,0,133:8:0:0/1:58 chr11 73715542 . G A 39.1 . DP=36;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=50 PL:DP:SP:GT:GQ 72,18,0:6:0:1/1:90 chr11 73768621 . T G 30 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=2,7,0,6;MQ=49;PV4=0.49,1,0.013,0.014 PL:DP:SP:GT:GQ 60,0,104:15:3:0/1:63 chr11 74047683 . A G 83 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=17,2,11,1;MQ=49;PV4=1,2.7e-07,1.4e-05,1 PL:DP:SP:GT:GQ 113,0,255:31:0:0/1:99 chr11 74049569 . A G 99 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=6,8,10,11;MQ=49;PV4=1,2.4e-09,0.0085,1 PL:DP:SP:GT:GQ 195,0,255:35:0:0/1:99 chr11 74053547 . C T 99 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=8,5,7,6;MQ=48;PV4=1,1.2e-08,5.3e-08,1 PL:DP:SP:GT:GQ 197,0,255:26:0:0/1:99 chr11 74330980 . A G 37 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=11,0,7,0;MQ=49;PV4=1,9.6e-09,0.21,0.084 PL:DP:SP:GT:GQ 67,0,219:18:0:0/1:70 chr11 74407676 . C T 28 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,7,1,3;MQ=48;PV4=0.36,1,0.46,1 PL:DP:SP:GT:GQ 58,0,81:11:0:0/1:61 chr11 74790272 . A C 4.75 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=25 PL:DP:SP:GT:GQ 35,9,0:3:0:1/1:63 chr11 74880737 . G T 23 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=1,2,5,2;MQ=48;PV4=0.5,0.00047,0.045,1 PL:DP:SP:GT:GQ 53,0,97:10:3:0/1:56 chr11 74904362 . T C 97 . DP=31;AF1=0.9999;CI95=0.5,1;DP4=0,2,7,3;MQ=48;PV4=0.15,1,0.089,1 PL:DP:SP:GT:GQ 127,3,0:12:8:1/1:41 chr11 75152243 . C T 14.2 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,2,1,2;MQ=49;PV4=1,0.0033,0.11,1 PL:DP:SP:GT:GQ 44,0,185:8:0:0/1:47 chr11 76372052 . A G 15.9 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 chr11 76372564 . T C 46.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 78,6,0:2:0:1/1:49 chr11 76506572 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 chr11 76827360 . A G 76 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=48 PL:DP:SP:GT:GQ 109,36,0:12:0:1/1:99 chr11 76834712 . A G 37 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=7,0,5,0;MQ=49;PV4=1,0.00032,0.003,1 PL:DP:SP:GT:GQ 67,0,180:12:0:0/1:70 chr11 76979900 . C G 52.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=49 PL:DP:SP:GT:GQ 85,21,0:7:0:1/1:84 chr11 77335982 . C A 23.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:DP:SP:GT:GQ 56,12,0:4:0:1/1:72 chr11 77378388 . T C 13.2 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=10,16,3,2;MQ=49;PV4=0.63,1.1e-05,2.1e-08,1 PL:DP:SP:GT:GQ 43,0,255:31:2:0/1:46 chr11 77378505 . A G 99 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=5,15,5,6;MQ=48;PV4=0.42,0.24,2.5e-15,1 PL:DP:SP:GT:GQ 210,0,255:31:4:0/1:99 chr11 77409568 . T C 99 . DP=67;AF1=0.5;CI95=0.5,0.5;DP4=16,16,18,13;MQ=48;PV4=0.62,7.3e-18,9.1e-16,1 PL:DP:SP:GT:GQ 233,0,255:63:2:0/1:99 chr11 77553638 . T C 48 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=7,5,4,0;MQ=49;PV4=0.24,0.018,7e-05,1 PL:DP:SP:GT:GQ 78,0,255:16:6:0/1:81 chr11 77632462 . G A 33 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,3;MQ=47;PV4=0.4,0.17,0.073,1 PL:DP:SP:GT:GQ 63,0,64:5:0:0/1:63 chr11 77775466 . C G 48.5 . DP=9;AF1=0.5718;CI95=0.5,1;DP4=0,1,0,7;MQ=49;PV4=1,0.078,0.21,1 PL:DP:SP:GT:GQ 78,0,6:8:0:0/1:8 chr11 77811990 . T C 83 . DP=9;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=48 PL:DP:SP:GT:GQ 116,27,0:9:0:1/1:99 chr11 78204073 . CACAGATAC CAC 25.5 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=8,0,2,0;MQ=50;PV4=1,0.14,1,1 PL:DP:SP:GT:GQ 63,0,200:10:0:0/1:66 chr11 78277122 . t tCAACC 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,61:3:0:0/1:44 chr11 82644904 . G A 99 . DP=27;AF1=1;CI95=1,1;DP4=1,0,11,8;MQ=47;PV4=1,1,0.18,1 PL:DP:SP:GT:GQ 255,40,0:20:0:1/1:99 chr11 85367289 . C T 79.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=45 PL:DP:SP:GT:GQ 112,15,0:5:0:1/1:75 chr11 85436500 . T C 99 . DP=54;AF1=1;CI95=1,1;DP4=0,0,9,9;MQ=49 PL:DP:SP:GT:GQ 199,54,0:18:0:1/1:99 chr11 85436699 . A G 67.1 . DP=40;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,2,6;MQ=49;PV4=1,0.0001,0.23,1 PL:DP:SP:GT:GQ 97,0,16:9:0:0/1:19 chr11 85447611 . T C 99 . DP=21;AF1=1;CI95=1,1;DP4=0,1,1,13;MQ=43;PV4=1,1,0.00052,1 PL:DP:SP:GT:GQ 231,19,0:15:0:1/1:76 chr11 85977117 . G A 6.98 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=4,1,0,2;MQ=48;PV4=0.14,0.099,2.4e-06,0.18 PL:DP:SP:GT:GQ 36,0,164:7:8:0/1:39 chr11 86097064 . A T 17.1 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=49;PV4=1,0.019,1,1 PL:DP:SP:GT:GQ 47,0,69:8:0:0/1:50 chr11 86340596 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 chr11 86806071 . C G 99 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=43 PL:DP:SP:GT:GQ 141,15,0:5:0:1/1:75 chr11 86807104 . C A 41.2 . DP=11;AF1=0.5263;CI95=0.5,1;DP4=0,1,1,4;MQ=48;PV4=1,0.24,0.31,1 PL:DP:SP:GT:GQ 71,0,10:6:0:0/1:13 chr11 87020504 . A C 6.98 . DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=3,0,5,0;MQ=48;PV4=1,0.0086,0.14,0.25 PL:DP:SP:GT:GQ 36,0,51:8:0:0/1:39 chr11 88045583 . A G 99 . DP=27;AF1=1;CI95=1,1;DP4=0,0,7,13;MQ=48 PL:DP:SP:GT:GQ 206,60,0:20:0:1/1:99 chr11 88330322 . A C 8.64 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=49;PV4=1,1,0.015,1 PL:DP:SP:GT:GQ 38,0,43:8:0:0/1:40 chr11 89073269 . G A 7.8 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=1,1,2,0;MQ=48;PV4=1,0.33,0.16,1 PL:DP:SP:GT:GQ 37,0,44:4:0:0/1:39 chr11 90016648 . A C 4.13 . DP=13;AF1=0.4998;CI95=0.5,0.5;DP4=1,3,3,0;MQ=49;PV4=0.14,0.024,0.4,1 PL:DP:SP:GT:GQ 32,0,113:7:8:0/1:35 chr11 90849279 . C G 99 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,4,2;MQ=47 PL:DP:SP:GT:GQ 133,18,0:6:0:1/1:90 chr11 93212254 . C T 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=44 PL:DP:SP:GT:GQ 139,27,0:9:0:1/1:99 chr11 93530682 . A T 14.3 . DP=13;AF1=0.5163;CI95=0.5,1;DP4=1,0,3,0;MQ=49;PV4=1,0.36,0.33,1 PL:DP:SP:GT:GQ 44,0,12:4:0:0/1:15 chr11 93623054 . T A 4.78 . DP=5;AF1=0.5024;CI95=0.5,0.5;DP4=0,1,1,1;MQ=49;PV4=1,0.29,0.33,1 PL:DP:SP:GT:GQ 33,0,20:3:0:0/1:23 chr11 93886838 . G C 49 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=45 PL:DP:SP:GT:GQ 81,9,0:3:0:1/1:63 chr11 93913458 . T C 62.1 . DP=32;AF1=1;CI95=1,1;DP4=0,0,1,6;MQ=49 PL:DP:SP:GT:GQ 95,21,0:7:0:1/1:84 chr11 94225920 . C T 99 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=8,2,7,1;MQ=47;PV4=1,0.00065,6.6e-08,1 PL:DP:SP:GT:GQ 152,0,255:18:0:0/1:99 chr11 94326627 . G A 99 . DP=19;AF1=1;CI95=1,1;DP4=0,0,17,0;MQ=47 PL:DP:SP:GT:GQ 132,51,0:17:0:1/1:99 chr11 94340853 . T C 4.29 . DP=11;AF1=0.5334;CI95=0.5,1;DP4=0,1,0,2;MQ=49;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 32,0,9:3:0:0/1:12 chr11 95521648 . A G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 chr11 95546829 . T G 6.33 . DP=8;AF1=0.5206;CI95=0.5,1;DP4=0,1,0,2;MQ=47;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 35,0,11:3:0:0/1:14 chr11 95552672 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 chr11 95555630 . A C 3.12 . DP=6;AF1=0.5261;CI95=0.5,0.5;DP4=1,0,3,0;MQ=48;PV4=1,1,0.39,0.14 PL:DP:SP:GT:GQ 30,0,10:4:0:0/1:13 chr11 96092376 . C T 99 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=42 PL:DP:SP:GT:GQ 142,15,0:5:0:1/1:75 chr11 96123734 . TG TGG 97.5 . INDEL;DP=18;AF1=0.5;CI95=0.5,0.5;DP4=9,0,8,0;MQ=50;PV4=1,1,1,0.49 PL:DP:SP:GT:GQ 135,0,124:17:0:0/1:99 chr11 96125435 . CTTT CT 51.5 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,4;MQ=50;PV4=1,0.25,1,0.49 PL:DP:SP:GT:GQ 89,0,87:7:0:0/1:88 chr11 98436183 . C CA 53.7 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=33 PL:DP:SP:GT:GQ 94,15,0:5:0:1/1:75 chr11 98436527 . A C 53.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=48 PL:DP:SP:GT:GQ 86,12,0:4:0:1/1:72 chr11 101323856 . TAAGAAG TAAG 99 . INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,6;MQ=50;PV4=1,0.11,1,1 PL:DP:SP:GT:GQ 169,0,178:13:0:0/1:99 chr11 101344177 . G A 11.3 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,0;MQ=49;PV4=1,6.2e-05,0.11,1 PL:DP:SP:GT:GQ 41,0,158:8:0:0/1:44 chr11 101771248 . G A 99 . DP=27;AF1=1;CI95=1,1;DP4=0,0,10,16;MQ=43 PL:DP:SP:GT:GQ 255,78,0:26:0:1/1:99 chr11 101857758 . G A 5.46 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,2;MQ=49;PV4=1,0.12,0.25,1 PL:DP:SP:GT:GQ 34,0,33:5:0:0/1:33 chr11 101868319 . C G 26.2 . DP=7;AF1=0.7303;CI95=0.5,1;DP4=1,0,3,0;MQ=44;PV4=1,1,0.0037,1 PL:DP:SP:GT:GQ 55,0,2:4:0:0/1:3 chr11 102207851 . G A 52 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=45 PL:DP:SP:GT:GQ 84,9,0:3:0:1/1:63 chr11 102573396 . C G 65 . DP=12;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=49 PL:DP:SP:GT:GQ 98,30,0:10:0:1/1:99 chr11 102573451 . T C 96 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=9,2,10,0;MQ=47;PV4=0.48,0.00049,0.0055,0.47 PL:DP:SP:GT:GQ 126,0,253:21:3:0/1:99 chr11 102584607 . T C 43.1 . DP=26;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=49 PL:DP:SP:GT:GQ 76,21,0:7:0:1/1:84 chr11 102592049 . Ttgtgtgtgtgtgtgtgtgtgt TTGTGtgtgtgtgtgtgtgtgtgtgt 29.4 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=28 PL:DP:SP:GT:GQ 69,9,0:3:0:1/1:63 chr11 102593248 . T C 31.3 . DP=54;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=50 PL:DP:SP:GT:GQ 64,15,0:5:0:1/1:75 chr11 102647310 . T G 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,19,0;MQ=47 PL:DP:SP:GT:GQ 158,57,0:19:0:1/1:99 chr11 102709425 . A G 77 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,7,1,7;MQ=48;PV4=1,0.00038,0.00031,0.48 PL:DP:SP:GT:GQ 107,0,167:15:0:0/1:99 chr11 104869708 . G C 75 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=2,8,1,5;MQ=48;PV4=1,0.039,2.6e-08,1 PL:DP:SP:GT:GQ 105,0,249:16:0:0/1:99 chr11 104877927 . T C 99 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=7,7,10,4;MQ=48;PV4=0.44,2e-05,5.4e-07,1 PL:DP:SP:GT:GQ 184,0,255:28:4:0/1:99 chr11 104972190 . C T 5.46 . DP=20;AF1=0.4999;CI95=0.5,0.5;DP4=1,13,0,4;MQ=49;PV4=1,0.12,5.6e-09,0.36 PL:DP:SP:GT:GQ 34,0,208:18:0:0/1:37 chr11 107275143 . A G 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,7,15;MQ=49 PL:DP:SP:GT:GQ 194,66,0:22:0:1/1:99 chr11 107578721 . C G 84 . DP=24;AF1=1;CI95=1,1;DP4=0,1,0,17;MQ=49;PV4=1,0.16,0.31,1 PL:DP:SP:GT:GQ 117,24,0:18:0:1/1:96 chr11 107607312 . T C 14.1 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 46,9,0:3:0:1/1:63 chr11 107817110 . G C 8.44 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 chr11 108093208 . A T 19.1 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=11,1,2,3;MQ=49;PV4=0.053,0.00056,0.0054,0.28 PL:DP:SP:GT:GQ 49,0,248:17:13:0/1:52 chr11 108183167 . A G 50.5 . DP=19;AF1=0.5718;CI95=0.5,1;DP4=0,1,1,3;MQ=47;PV4=1,1,0.038,1 PL:DP:SP:GT:GQ 80,0,6:5:0:0/1:8 chr11 108199995 . A G 12 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 chr11 108225483 . C T 34 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,0.0094,0.11,0.47 PL:DP:SP:GT:GQ 64,0,77:5:0:0/1:67 chr11 108225661 . A G 99 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=40 PL:DP:SP:GT:GQ 141,15,0:5:0:1/1:75 chr11 108345515 . G GA 99 . INDEL;DP=27;AF1=0.5;CI95=0.5,0.5;DP4=12,2,9,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 180,0,204:24:0:0/1:99 chr11 108352160 . C T 55 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=45 PL:DP:SP:GT:GQ 87,9,0:3:0:1/1:63 chr11 108380335 . T C 99 . DP=48;AF1=1;CI95=1,1;DP4=1,1,2,20;MQ=48;PV4=0.24,1,0.073,1 PL:DP:SP:GT:GQ 148,31,0:24:6:1/1:99 chr11 108548002 . T A 19.1 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=0,14,0,6;MQ=49;PV4=1,0.13,0.0081,0.38 PL:DP:SP:GT:GQ 49,0,149:20:0:0/1:52 chr11 108711979 . A G 10.2 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 chr11 109920383 . C T 24 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 56,9,0:3:0:1/1:63 chr11 110106746 . C T 17.6 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:DP:SP:GT:GQ 50,12,0:4:0:1/1:72 chr11 111338478 . T C 13 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 chr11 111420364 . A G 99 . DP=44;AF1=1;CI95=1,1;DP4=0,1,10,28;MQ=44;PV4=1,1,0.00017,1 PL:DP:SP:GT:GQ 255,85,0:39:0:1/1:99 chr11 111487106 . C G 99 . DP=22;AF1=1;CI95=1,1;DP4=0,0,1,17;MQ=47 PL:DP:SP:GT:GQ 190,54,0:18:0:1/1:99 chr11 111916001 . AGG AG 99 . INDEL;DP=14;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=50 PL:DP:SP:GT:GQ 157,39,0:13:0:1/1:99 chr11 111959715 . C T 4.13 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,0,3;MQ=47;PV4=0.1,0.23,1,0.22 PL:DP:SP:GT:GQ 32,0,34:5:10:0/1:33 chr11 112041128 . TTTTGTCCTGTT TTT 99 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=3,0,6,0;MQ=50;PV4=1,0.15,1,1 PL:DP:SP:GT:GQ 176,0,102:9:0:0/1:99 chr11 112064431 . T C 99 . DP=7;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=43 PL:DP:SP:GT:GQ 175,21,0:7:0:1/1:84 chr11 112065367 . A C 5.31 . DP=12;AF1=0.6242;CI95=0.5,1;DP4=1,0,2,0;MQ=49;PV4=1,1,0.17,0.23 PL:DP:SP:GT:GQ 33,0,4:3:0:0/1:6 chr11 112088499 . A C 45.1 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=49 PL:DP:SP:GT:GQ 78,18,0:6:0:1/1:90 chr11 113220914 . C G 3.34 . DP=5;AF1=0.5937;CI95=0.5,1;DP4=0,1,0,2;MQ=49;PV4=1,1,0.33,0.089 PL:DP:SP:GT:GQ 30,0,5:3:0:0/1:7 chr11 113618968 . G C 64.8 . DP=32;AF1=1;CI95=0.5,1;DP4=1,0,3,3;MQ=49;PV4=1,1,0.22,0.18 PL:DP:SP:GT:GQ 96,6,0:7:0:1/1:49 chr11 113670052 . T A 97.1 . DP=56;AF1=1;CI95=0.5,1;DP4=1,0,7,3;MQ=48;PV4=1,1,0.3,1 PL:DP:SP:GT:GQ 130,18,0:11:0:1/1:90 chr11 113679119 . C T 99 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=6,12,7,7;MQ=47;PV4=0.47,0.00019,9.1e-13,1 PL:DP:SP:GT:GQ 255,0,255:32:3:0/1:99 chr11 113683249 . C A 23 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,7;MQ=49;PV4=0.46,0.04,0.066,1 PL:DP:SP:GT:GQ 53,0,117:13:0:0/1:56 chr11 113857249 . C A 18.1 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=5,6,5,0;MQ=49;PV4=0.093,0.2,0.013,1 PL:DP:SP:GT:GQ 48,0,182:16:10:0/1:51 chr11 114057792 . T G 20 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=49;PV4=1,0.076,0.0026,0.28 PL:DP:SP:GT:GQ 50,0,102:10:0:0/1:53 chr11 114272574 . T A 10.4 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,7,0,4;MQ=50;PV4=1,0.068,0.021,0.13 PL:DP:SP:GT:GQ 40,0,147:12:0:0/1:43 chr11 114273481 . A T 5.46 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=3,0,2,0;MQ=48;PV4=1,0.29,0.18,1 PL:DP:SP:GT:GQ 34,0,62:5:0:0/1:37 chr11 114324026 . A G 98.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=43 PL:DP:SP:GT:GQ 131,12,0:4:0:1/1:72 chr11 114324444 . G A 21 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,2,3,2;MQ=50;PV4=1,0.0077,0.24,1 PL:DP:SP:GT:GQ 51,0,53:8:0:0/1:52 chr11 114442103 . A G 99 . DP=28;AF1=1;CI95=1,1;DP4=0,0,6,19;MQ=47 PL:DP:SP:GT:GQ 255,75,0:25:0:1/1:99 chr11 115047391 . A G 10.4 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,5;MQ=48;PV4=1,0.00075,0.0031,1 PL:DP:SP:GT:GQ 40,0,171:13:0:0/1:43 chr11 115047402 . C G 7.8 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,4;MQ=49;PV4=1,0.09,0.0074,1 PL:DP:SP:GT:GQ 37,0,87:11:0:0/1:40 chr11 115214884 . A AT 22.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 61,6,0:2:0:1/1:49 chr11 116655747 . G C 4.13 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=3,3,4,0;MQ=49;PV4=0.2,0.077,0.038,1 PL:DP:SP:GT:GQ 32,0,154:10:7:0/1:35 chr11 116693464 . C T 99 . DP=53;AF1=1;CI95=1,1;DP4=0,1,2,14;MQ=47;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 158,24,0:17:0:1/1:96 chr11 116703640 . G C 45.3 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 78,15,0:5:0:1/1:75 chr11 116707684 . A G 99 . DP=16;AF1=1;CI95=1,1;DP4=1,0,14,0;MQ=44;PV4=1,1,0.00015,1 PL:DP:SP:GT:GQ 199,22,0:15:0:1/1:88 chr11 116824884 . T G 37.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,1,0,6;MQ=48;PV4=1,1,0.27,1 PL:DP:SP:GT:GQ 69,7,0:7:0:1/1:57 chr11 116950176 . G T 3.52 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 33,9,0:3:0:1/1:63 chr11 117109270 . G T 27 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=44 PL:DP:SP:GT:GQ 59,9,0:3:0:1/1:63 chr11 117109614 . T G 9.52 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=1,17,6,0;MQ=49;PV4=5.2e-05,0.00011,0.00057,0.27 PL:DP:SP:GT:GQ 39,0,254:24:43:0/1:42 chr11 117152673 . A C 6.98 . DP=23;AF1=0.4999;CI95=0.5,0.5;DP4=2,2,3,0;MQ=49;PV4=0.43,0.075,0.015,1 PL:DP:SP:GT:GQ 36,0,107:7:4:0/1:39 chr11 117160347 . A G 99 . DP=38;AF1=1;CI95=1,1;DP4=0,0,16,13;MQ=48 PL:DP:SP:GT:GQ 242,87,0:29:0:1/1:99 chr11 117163765 . C A 99 . DP=33;AF1=1;CI95=1,1;DP4=0,0,17,9;MQ=49 PL:DP:SP:GT:GQ 205,78,0:26:0:1/1:99 chr11 117163824 . C G 92 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=10,14,2,5;MQ=49;PV4=0.68,0.0087,3.6e-15,0.5 PL:DP:SP:GT:GQ 122,0,255:31:2:0/1:99 chr11 117265871 . GCT G 22.5 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,2;MQ=50;PV4=0.33,1,1,0.0014 PL:DP:SP:GT:GQ 60,0,43:4:5:0/1:46 chr11 117282800 . G T 69.1 . DP=37;AF1=1;CI95=0.5,1;DP4=0,0,4,2;MQ=49 PL:DP:SP:GT:GQ 102,18,0:6:0:1/1:90 chr11 117332352 . A G 26.1 . DP=6;AF1=0.505;CI95=0.5,0.5;DP4=0,1,0,4;MQ=48;PV4=1,0.14,0.26,1 PL:DP:SP:GT:GQ 56,0,17:5:0:0/1:20 chr11 117335722 . T C 65.4 . DP=33;AF1=1;CI95=0.5,1;DP4=1,0,3,5;MQ=48;PV4=0.44,1,0.25,1 PL:DP:SP:GT:GQ 98,13,0:9:0:1/1:65 chr11 117342462 . T C 22 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=49;PV4=1,0.0048,0.046,1 PL:DP:SP:GT:GQ 52,0,119:8:0:0/1:55 chr11 117375596 . G A 99 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=7,2,6,1;MQ=47;PV4=1,0.004,5.9e-12,1 PL:DP:SP:GT:GQ 172,0,255:16:0:0/1:99 chr11 117391966 . G A 51 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,5;MQ=49;PV4=1,0.0024,0.053,1 PL:DP:SP:GT:GQ 81,0,169:10:0:0/1:84 chr11 117774291 . A C 18 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 chr11 117869670 . A G 18 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 chr11 117979744 . C A 99 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=43 PL:DP:SP:GT:GQ 150,15,0:5:0:1/1:75 chr11 117982495 . T G 35.1 . DP=17;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=50 PL:DP:SP:GT:GQ 68,21,0:7:0:1/1:84 chr11 117988082 . T C 99 . DP=38;AF1=1;CI95=1,1;DP4=0,0,14,2;MQ=48 PL:DP:SP:GT:GQ 165,48,0:16:0:1/1:99 chr11 118074337 . A G 99 . DP=47;AF1=1;CI95=1,1;DP4=0,0,15,27;MQ=46 PL:DP:SP:GT:GQ 255,126,0:42:0:1/1:99 chr11 118083664 . A G 77.1 . DP=23;AF1=1;CI95=1,1;DP4=0,0,1,6;MQ=48 PL:DP:SP:GT:GQ 110,21,0:7:0:1/1:84 chr11 118107805 . A G 99 . DP=52;AF1=1;CI95=1,1;DP4=0,0,7,7;MQ=49 PL:DP:SP:GT:GQ 152,42,0:14:0:1/1:99 chr11 118110977 . T C 45.5 . DP=57;AF1=1;CI95=0.5,1;DP4=0,1,1,7;MQ=49;PV4=1,0.22,0.28,1 PL:DP:SP:GT:GQ 76,4,0:9:0:1/1:45 chr11 118134785 . T G 79 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=7,2,12,0;MQ=49;PV4=0.17,0.00056,0.043,1 PL:DP:SP:GT:GQ 109,0,212:21:8:0/1:99 chr11 118210106 . G C 23 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=7,0,4,0;MQ=49;PV4=1,1.5e-05,0.018,1 PL:DP:SP:GT:GQ 53,0,188:11:0:0/1:56 chr11 118215075 . Aggctggctggctggctggctg Aggctggctggctggctg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 chr11 118263398 . G T 30.1 . DP=5;AF1=0.5129;CI95=0.5,0.5;DP4=1,0,3,0;MQ=42;PV4=1,1,0.16,1 PL:DP:SP:GT:GQ 60,0,13:4:0:0/1:16 chr11 118263413 . A T 12.3 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,0;MQ=46;PV4=1,0.25,0.041,1 PL:DP:SP:GT:GQ 42,0,86:5:0:0/1:45 chr11 118405343 . G A 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=44 PL:DP:SP:GT:GQ 194,33,0:11:0:1/1:99 chr11 118498889 . C A 35 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=6,3,0,8;MQ=48;PV4=0.009,0.0046,0.16,1 PL:DP:SP:GT:GQ 65,0,205:17:20:0/1:68 chr11 118873910 . TGG TGGG 43 . INDEL;DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=23 PL:DP:SP:GT:GQ 83,12,0:4:0:1/1:72 chr11 118920453 . T C 30.3 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 63,15,0:5:0:1/1:75 chr11 118967758 . T C 99 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=2,4,7,11;MQ=46;PV4=1,0.0014,1.5e-05,1 PL:DP:SP:GT:GQ 255,0,175:24:0:0/1:99 chr11 118970875 . T C 13.9 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 chr11 118985151 . T C 24 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=49;PV4=1,0.02,0.0018,1 PL:DP:SP:GT:GQ 54,0,156:10:0:0/1:57 chr11 119005088 . C T 87.1 . DP=43;AF1=1;CI95=1,1;DP4=0,0,1,6;MQ=48 PL:DP:SP:GT:GQ 120,21,0:7:0:1/1:84 chr11 119031841 . GCCC GCCCC 99 . INDEL;DP=14;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=50 PL:DP:SP:GT:GQ 155,30,0:10:0:1/1:99 chr11 119052826 . C A 99 . DP=14;AF1=1;CI95=1,1;DP4=1,0,4,8;MQ=48;PV4=0.38,1,0.17,1 PL:DP:SP:GT:GQ 164,21,0:13:0:1/1:84 chr11 119059404 . G A 36.3 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=50 PL:DP:SP:GT:GQ 69,15,0:5:0:1/1:75 chr11 119063908 . C T 99 . DP=33;AF1=1;CI95=1,1;DP4=0,0,11,17;MQ=48 PL:DP:SP:GT:GQ 246,84,0:28:0:1/1:99 chr11 119213400 . T A 3.54 . DP=16;AF1=0.4998;CI95=0.5,0.5;DP4=2,3,2,0;MQ=48;PV4=0.43,0.27,0.077,0.22 PL:DP:SP:GT:GQ 31,0,130:7:4:0/1:34 chr11 119216231 . A G 67.2 . DP=17;AF1=1;CI95=0.5,1;DP4=1,0,0,15;MQ=48;PV4=0.062,0.014,0.11,1 PL:DP:SP:GT:GQ 100,17,0:16:0:1/1:85 chr11 119229964 . G A 99 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=7,1,7,2;MQ=48;PV4=1,2.5e-06,0.003,1 PL:DP:SP:GT:GQ 137,0,221:17:0:0/1:99 chr11 119244095 . C T 50 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=5,2,3,0;MQ=47;PV4=1,1,0.0026,1 PL:DP:SP:GT:GQ 80,0,208:10:0:0/1:83 chr11 119291688 . A G 95 . DP=11;AF1=1;CI95=1,1;DP4=0,0,1,8;MQ=48 PL:DP:SP:GT:GQ 128,27,0:9:0:1/1:99 chr11 119510644 . A C 30.3 . DP=31;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=50 PL:DP:SP:GT:GQ 63,15,0:5:0:1/1:75 chr11 119692663 . T C 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,3,10;MQ=45 PL:DP:SP:GT:GQ 255,39,0:13:0:1/1:99 chr11 119999191 . A G 13.3 . DP=11;AF1=0.508;CI95=0.5,0.5;DP4=0,1,0,3;MQ=47;PV4=1,0.0076,0.16,1 PL:DP:SP:GT:GQ 43,0,15:4:0:0/1:18 chr11 120175749 . A G,C 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,9,6;MQ=48 PL:DP:SP:GT:GQ 177,42,168,0,21,168:15:0:1/1:99 chr11 120823528 . A G 46 . DP=24;AF1=1;CI95=1,1;DP4=0,0,20,0;MQ=50 PL:DP:SP:GT:GQ 79,60,0:20:0:1/1:99 chr11 120831520 . T C 14.2 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=49;PV4=1,0.022,0.00079,1 PL:DP:SP:GT:GQ 44,0,115:7:0:0/1:47 chr11 120852961 . C A 99 . DP=53;AF1=1;CI95=1,1;DP4=0,1,10,34;MQ=47;PV4=1,0.27,0.0064,1 PL:DP:SP:GT:GQ 254,109,0:45:0:1/1:99 chr11 120996292 . A G 15.1 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=11,8,6,1;MQ=49;PV4=0.36,0.0016,0.00029,0.3 PL:DP:SP:GT:GQ 45,0,255:26:4:0/1:48 chr11 121028601 . C T 16.1 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,3;MQ=48;PV4=0.25,0.004,0.16,1 PL:DP:SP:GT:GQ 46,0,38:4:0:0/1:40 chr11 121032978 . G A 36.1 . DP=46;AF1=0.508;CI95=0.5,0.5;DP4=1,1,0,8;MQ=49;PV4=0.2,0.21,0.26,1 PL:DP:SP:GT:GQ 66,0,15:10:0:0/1:18 chr11 121403229 . T C 80.4 . DP=37;AF1=0.5554;CI95=0.5,1;DP4=2,0,2,12;MQ=49;PV4=0.05,0.018,0.13,1 PL:DP:SP:GT:GQ 110,0,7:16:13:0/1:10 chr11 121403345 . T C 34.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 67,15,0:5:0:1/1:75 chr11 121437819 . C G 99 . DP=24;AF1=1;CI95=1,1;DP4=0,1,1,20;MQ=48;PV4=1,1,0.2,1 PL:DP:SP:GT:GQ 159,48,0:22:0:1/1:99 chr11 121461921 . C T 5.46 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,0,3;MQ=48;PV4=1,0.15,0.12,1 PL:DP:SP:GT:GQ 34,0,64:7:0:0/1:37 chr11 121475798 . T A 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,10,1;MQ=45 PL:DP:SP:GT:GQ 152,33,0:11:0:1/1:99 chr11 122650172 . C G 49.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=47 PL:DP:SP:GT:GQ 82,12,0:4:0:1/1:72 chr11 122665437 . A G 99 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=3,12,2,5;MQ=48;PV4=1,0.011,6e-06,1 PL:DP:SP:GT:GQ 154,0,255:22:0:0/1:99 chr11 122671944 . T G 13.2 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=13,5,0,7;MQ=49;PV4=0.0016,0.00076,2.6e-05,0.37 PL:DP:SP:GT:GQ 43,0,255:25:28:0/1:46 chr11 122742050 . T C 99 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=2,15,1,11;MQ=48;PV4=1,3e-05,5.2e-07,1 PL:DP:SP:GT:GQ 144,0,255:29:0:0/1:99 chr11 122775227 . T C 34.1 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=50 PL:DP:SP:GT:GQ 67,18,0:6:0:1/1:90 chr11 122906650 . T C 33 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=3,3,3,2;MQ=37;PV4=1,0.15,0.024,0.38 PL:DP:SP:GT:GQ 63,0,149:11:0:0/1:66 chr11 122944324 . C T 22 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,4;MQ=47;PV4=1,0.22,0.0017,1 PL:DP:SP:GT:GQ 52,0,120:10:0:0/1:55 chr11 123470174 . C T 99 . DP=11;AF1=0.9999;CI95=0.5,1;DP4=0,1,0,9;MQ=43;PV4=1,1,0.47,0.3 PL:DP:SP:GT:GQ 140,3,0:10:0:1/1:41 chr11 123753937 . A G 99 . DP=59;AF1=1;CI95=1,1;DP4=0,0,21,31;MQ=46 PL:DP:SP:GT:GQ 255,157,0:52:0:1/1:99 chr11 123754844 . T C 5.44 . DP=39;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 36,9,0:3:0:1/1:63 chr11 123777497 . G A 99 . DP=37;AF1=1;CI95=1,1;DP4=1,1,11,16;MQ=46;PV4=1,1,0.00094,1 PL:DP:SP:GT:GQ 255,42,0:29:0:1/1:99 chr11 123886681 . A G 53 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=4,3,4,1;MQ=47;PV4=0.58,8.1e-05,0.033,1 PL:DP:SP:GT:GQ 83,0,236:12:2:0/1:86 chr11 123988195 . T G 35.1 . DP=22;AF1=0.5064;CI95=0.5,0.5;DP4=2,0,5,0;MQ=48;PV4=1,1,0.18,1 PL:DP:SP:GT:GQ 65,0,16:7:0:0/1:19 chr11 124247361 . C T 43.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=45 PL:DP:SP:GT:GQ 76,12,0:4:0:1/1:72 chr11 124253181 . T C 88.3 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=40 PL:DP:SP:GT:GQ 121,15,0:5:0:1/1:75 chr11 124266906 . C T 19.1 . DP=7;AF1=0.508;CI95=0.5,0.5;DP4=2,0,3,0;MQ=31;PV4=1,0.035,1,1 PL:DP:SP:GT:GQ 49,0,15:5:0:0/1:18 chr11 124545288 . T C 40 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=5,1,0,6;MQ=49;PV4=0.015,0.0012,0.002,1 PL:DP:SP:GT:GQ 70,0,169:12:18:0/1:73 chr11 124620859 . C A 18.2 . DP=16;AF1=0.5207;CI95=0.5,1;DP4=0,1,0,4;MQ=47;PV4=1,0.029,0.47,1 PL:DP:SP:GT:GQ 48,0,11:5:0:0/1:14 chr11 124626117 . A C 6.98 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,2,0;MQ=47;PV4=1,0.22,0.0041,1 PL:DP:SP:GT:GQ 36,0,49:4:0:0/1:39 chr11 124789755 . T C 99 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=9,16,3,12;MQ=48;PV4=0.48,0.13,6.6e-25,1 PL:DP:SP:GT:GQ 226,0,255:40:3:0/1:99 chr11 124793682 . T C 99 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=3,12,3,9;MQ=48;PV4=1,0.034,8e-07,1 PL:DP:SP:GT:GQ 157,0,255:27:0:0/1:99 chr11 124954282 . A G 51 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,7;MQ=48;PV4=1,6.5e-06,0.27,0.47 PL:DP:SP:GT:GQ 81,0,147:12:0:0/1:84 chr11 125298871 . A G 99 . DP=20;AF1=1;CI95=1,1;DP4=0,0,16,1;MQ=48 PL:DP:SP:GT:GQ 164,51,0:17:0:1/1:99 chr11 125326026 . C T 35 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=2,7,0,8;MQ=50;PV4=0.47,1.3e-05,0.074,1 PL:DP:SP:GT:GQ 65,0,247:17:3:0/1:68 chr11 125479363 . G A 99 . DP=50;AF1=1;CI95=1,1;DP4=1,1,22,18;MQ=48;PV4=1,0.3,0.065,1 PL:DP:SP:GT:GQ 255,70,0:42:0:1/1:99 chr11 125525195 . A G 27 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 59,9,0:3:0:1/1:63 chr11 125547660 . C G 67 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=16,0,8,0;MQ=49;PV4=1,1e-05,7.3e-07,0.41 PL:DP:SP:GT:GQ 97,0,235:24:0:0/1:99 chr11 125617376 . CTTT CTT 30.4 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 70,9,0:3:0:1/1:63 chr11 125617610 . A G 8.61 . DP=41;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 40,9,0:3:0:1/1:63 chr11 125618731 . T C 13 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 chr11 125766044 . C A 99 . DP=60;AF1=0.5;CI95=0.5,0.5;DP4=12,12,20,11;MQ=46;PV4=0.41,5e-09,1.8e-17,1 PL:DP:SP:GT:GQ 255,0,255:55:4:0/1:99 chr11 125891269 . C T 99 . DP=28;AF1=1;CI95=1,1;DP4=0,1,6,13;MQ=47;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 236,38,0:20:0:1/1:99 chr11 126081403 . T C 79.1 . DP=20;AF1=1;CI95=0.5,1;DP4=0,0,4,2;MQ=48 PL:DP:SP:GT:GQ 112,18,0:6:0:1/1:90 chr11 126134928 . C T 48 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=5,6,0,9;MQ=49;PV4=0.038,0.24,0.084,1 PL:DP:SP:GT:GQ 78,0,176:20:14:0/1:81 chr11 126139100 . T C 58.5 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=47 PL:DP:SP:GT:GQ 91,12,0:4:0:1/1:72 chr11 126148432 . T C 23.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 55,6,0:2:0:1/1:49 chr11 126176578 . G A 12.4 . DP=22;AF1=0.5207;CI95=0.5,1;DP4=1,0,5,0;MQ=50;PV4=1,0.0054,0.35,1 PL:DP:SP:GT:GQ 42,0,11:6:0:0/1:14 chr11 127238526 . atct a 63.4 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 103,9,0:3:0:1/1:63 chr11 128333503 . T C 99 . DP=57;AF1=0.5;CI95=0.5,0.5;DP4=21,14,13,7;MQ=49;PV4=0.78,4e-17,0.0013,1 PL:DP:SP:GT:GQ 136,0,255:55:1:0/1:99 chr11 128781339 . T C 99 . DP=25;AF1=1;CI95=0.5,1;DP4=2,0,3,14;MQ=48;PV4=0.058,1,1,1 PL:DP:SP:GT:GQ 166,16,0:19:12:1/1:80 chr11 128781978 . T G 58 . DP=29;AF1=0.5032;CI95=0.5,0.5;DP4=2,0,3,4;MQ=49;PV4=0.44,0.091,0.37,1 PL:DP:SP:GT:GQ 88,0,19:9:4:0/1:22 chr11 128782002 . T C 99 . DP=43;AF1=1;CI95=1,1;DP4=0,0,20,4;MQ=46 PL:DP:SP:GT:GQ 223,72,0:24:0:1/1:99 chr11 128782012 . C G 53.2 . DP=54;AF1=1;CI95=0.5,1;DP4=0,1,6,1;MQ=47;PV4=0.25,1,0.27,1 PL:DP:SP:GT:GQ 85,8,0:8:0:1/1:56 chr11 128786294 . G A 99 . DP=29;AF1=1;CI95=1,1;DP4=0,0,23,1;MQ=43 PL:DP:SP:GT:GQ 255,72,0:24:0:1/1:99 chr11 128843249 . T C 40 . DP=19;AF1=0.5003;CI95=0.5,0.5;DP4=0,3,0,6;MQ=49;PV4=1,1,0.034,1 PL:DP:SP:GT:GQ 70,0,29:9:0:0/1:32 chr11 128846547 . C A 4.13 . DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=1,5,0,3;MQ=49;PV4=1,0.2,0.083,1 PL:DP:SP:GT:GQ 32,0,119:9:0:0/1:35 chr11 129307007 . C A 18 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 chr11 129754103 . T TG 42.4 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 82,9,0:3:0:1/1:63 chr11 129754644 . A G 55.5 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=47 PL:DP:SP:GT:GQ 88,12,0:4:0:1/1:72 chr11 129772172 . T C 74 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=15,0,14,0;MQ=49;PV4=1,1.2e-10,0.00069,1 PL:DP:SP:GT:GQ 104,0,230:29:0:0/1:99 chr11 129787081 . C G 31 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=3,10,0,5;MQ=48;PV4=0.52,0.45,0.00068,1 PL:DP:SP:GT:GQ 61,0,197:18:3:0/1:64 chr11 129801043 . C T 11.4 . DP=40;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,2,1;MQ=49;PV4=1,0.14,0.33,1 PL:DP:SP:GT:GQ 41,0,16:4:0:0/1:19 chr11 130066335 . C T 99 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,5;MQ=46;PV4=1,0.45,5e-08,1 PL:DP:SP:GT:GQ 130,0,108:9:0:0/1:99 chr11 130165697 . G C 67.1 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=47 PL:DP:SP:GT:GQ 100,18,0:6:0:1/1:90 chr11 130281488 . G A 99 . DP=44;AF1=1;CI95=1,1;DP4=0,2,13,21;MQ=44;PV4=0.53,0.32,2.3e-05,1 PL:DP:SP:GT:GQ 255,34,0:36:3:1/1:99 chr11 130286766 . G A 99 . DP=45;AF1=1;CI95=1,1;DP4=0,0,40,1;MQ=49 PL:DP:SP:GT:GQ 143,123,0:41:0:1/1:99 chr11 130339193 . C G 6.4 . DP=10;AF1=0.5335;CI95=0.5,1;DP4=0,1,0,2;MQ=48;PV4=1,1,0.077,0.36 PL:DP:SP:GT:GQ 35,0,9:3:0:0/1:12 chr11 130776454 . A G 26 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=6,0,2,0;MQ=48;PV4=1,0.16,0,1 PL:DP:SP:GT:GQ 56,0,171:8:0:0/1:59 chr11 133735327 . T A 3.01 . DP=9;AF1=0.4997;CI95=0.5,0.5;DP4=1,3,0,5;MQ=31;PV4=0.44,0.18,0.0034,1 PL:DP:SP:GT:GQ 30,0,74:9:0:0/1:33 chr11 134010647 . T G 10.4 . DP=9;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,3;MQ=49;PV4=0.25,0.011,0.33,0.21 PL:DP:SP:GT:GQ 40,0,35:4:0:0/1:37 chr11 134014673 . C CCT 99 . INDEL;DP=9;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=49 PL:DP:SP:GT:GQ 161,24,0:8:0:1/1:96 chr11 134018656 . T C 99 . DP=36;AF1=1;CI95=1,1;DP4=0,0,19,12;MQ=48 PL:DP:SP:GT:GQ 251,93,0:31:0:1/1:99 chr11 134031836 . CA CAAA 7.36 . INDEL;DP=2;AF1=0.5012;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,23:2:0:0/1:26 chr11 134226278 . C T 87 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=3,10,1,9;MQ=49;PV4=0.6,8e-05,0.0036,1 PL:DP:SP:GT:GQ 117,0,255:23:2:0/1:99