Mercurial > repos > devteam > vcfallelicprimitives

changeset 4:57a16b310fe8 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfallelicprimitives commit 36e9065027cc7bf721e9d203208477ee88906c57"
author iuc
date Thu, 23 Jan 2020 08:02:42 -0500
parents a8a4f94aa321
children
files macros.xml vcfallelicprimitives.xml
diffstat 2 files changed, 11 insertions(+), 11 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Mon Mar 26 12:19:14 2018 -0400
+++ b/macros.xml	Thu Jan 23 08:02:42 2020 -0500
@@ -1,7 +1,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="1.0.0_rc1">vcflib</requirement>
+            <requirement type="package" version="1.0.0_rc3">vcflib</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -10,10 +10,10 @@
             <exit_code range="1:" level="fatal" />
         </stdio>
     </xml>
-   <token name="@WRAPPER_VERSION@">1.0.0_rc1</token>
-   	<xml name="citations">
-   	     <citations>
-             <citation type="bibtex">
+   <token name="@WRAPPER_VERSION@">1.0.0_rc3</token>
+       <xml name="citations">
+           <citations>
+               <citation type="bibtex">
 @misc{Garrison2015,
   author = {Garrison, Erik},
   year = {2015},
@@ -22,8 +22,8 @@
   journal = {GitHub repository},
   url = {https://github.com/ekg/vcflib},
 }
-             </citation>
-   	     </citations>
-   	</xml>
+            </citation>
+        </citations>
+        </xml>
     <token name="@IS_PART_OF_VCFLIB@">is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).</token>
 </macros>
--- a/vcfallelicprimitives.xml	Mon Mar 26 12:19:14 2018 -0400
+++ b/vcfallelicprimitives.xml	Thu Jan 23 08:02:42 2020 -0500
@@ -7,12 +7,12 @@
     <expand macro="requirements"></expand>
     <expand macro="stdio" />
     <command>
-        cat "${input}" | vcfallelicprimitives 
+        cat '${input}' | vcfallelicprimitives
             ${m_option} 
-            -t "${t_option}"
+            -t '${t_option}'
             -L "${max_length}" 
             $keep_info 
-            $keep_geno > "${out_file1}"
+            $keep_geno > '${out_file1}'
     </command>
     <inputs>
         <param format="vcf" name="input" type="data" label="Select VCF dataset"/>