Mercurial > repos > devteam > vcfannotate
comparison vcfannotate.xml @ 4:01e0321aca98 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfannotate commit 36e9065027cc7bf721e9d203208477ee88906c57"
| author | iuc |
|---|---|
| date | Thu, 23 Jan 2020 08:03:53 -0500 |
| parents | 6faa2c4c71d2 |
| children |
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| 3:6faa2c4c71d2 | 4:01e0321aca98 |
|---|---|
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
| 7 <expand macro="stdio" /> | 7 <expand macro="stdio" /> |
| 8 <command>vcfannotate --key "${key_option}" -b "${bed_data}" "${input}" > "${out_file1}"</command> | 8 <command>vcfannotate --key '${key_option}' -b '${bed_data}' '${input}' > '${out_file1}'</command> |
| 9 <inputs> | 9 <inputs> |
| 10 <param format="vcf" name="input" type="data" label="Select VCF dataset"/> | 10 <param format="vcf" name="input" type="data" label="Select VCF dataset"/> |
| 11 <param name="bed_data" type="data" format="bed" label="Select BED dataset to itersect with"/> | 11 <param name="bed_data" type="data" format="bed" label="Select BED dataset to itersect with"/> |
| 12 <param name="key_option" type="text" value="BED-features" label="Intersecting VCF records will be prefixed with this TAG within the INFO field" help="--key option"/> | 12 <param name="key_option" type="text" value="BED-features" label="Intersecting VCF records will be prefixed with this TAG within the INFO field" help="--key option"/> |
| 13 </inputs> | 13 </inputs> |