Mercurial > repos > devteam > vcfannotate
changeset 4:01e0321aca98 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfannotate commit 36e9065027cc7bf721e9d203208477ee88906c57"
| author | iuc |
|---|---|
| date | Thu, 23 Jan 2020 08:03:53 -0500 |
| parents | 6faa2c4c71d2 |
| children | |
| files | macros.xml vcfannotate.xml |
| diffstat | 2 files changed, 9 insertions(+), 9 deletions(-) [+] |
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--- a/macros.xml Mon Mar 26 12:19:56 2018 -0400 +++ b/macros.xml Thu Jan 23 08:03:53 2020 -0500 @@ -1,7 +1,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="1.0.0_rc1">vcflib</requirement> + <requirement type="package" version="1.0.0_rc3">vcflib</requirement> <yield/> </requirements> </xml> @@ -10,10 +10,10 @@ <exit_code range="1:" level="fatal" /> </stdio> </xml> - <token name="@WRAPPER_VERSION@">1.0.0_rc1</token> - <xml name="citations"> - <citations> - <citation type="bibtex"> + <token name="@WRAPPER_VERSION@">1.0.0_rc3</token> + <xml name="citations"> + <citations> + <citation type="bibtex"> @misc{Garrison2015, author = {Garrison, Erik}, year = {2015}, @@ -22,8 +22,8 @@ journal = {GitHub repository}, url = {https://github.com/ekg/vcflib}, } - </citation> - </citations> - </xml> + </citation> + </citations> + </xml> <token name="@IS_PART_OF_VCFLIB@">is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).</token> </macros>
--- a/vcfannotate.xml Mon Mar 26 12:19:56 2018 -0400 +++ b/vcfannotate.xml Thu Jan 23 08:03:53 2020 -0500 @@ -5,7 +5,7 @@ </macros> <expand macro="requirements"/> <expand macro="stdio" /> - <command>vcfannotate --key "${key_option}" -b "${bed_data}" "${input}" > "${out_file1}"</command> + <command>vcfannotate --key '${key_option}' -b '${bed_data}' '${input}' > '${out_file1}'</command> <inputs> <param format="vcf" name="input" type="data" label="Select VCF dataset"/> <param name="bed_data" type="data" format="bed" label="Select BED dataset to itersect with"/>