# HG changeset patch
# User iuc
# Date 1579784700 18000
# Node ID aea8e90ad7887866169877d421b6bf8d385de118
# Parent  9edfe5145ba800e78c3eb31c5d079afbfac29786
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfbedintersect commit 36e9065027cc7bf721e9d203208477ee88906c57"

diff -r 9edfe5145ba8 -r aea8e90ad788 macros.xml
--- a/macros.xml	Mon Mar 26 12:21:18 2018 -0400
+++ b/macros.xml	Thu Jan 23 08:05:00 2020 -0500
@@ -1,7 +1,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="1.0.0_rc1">vcflib</requirement>
+            <requirement type="package" version="1.0.0_rc3">vcflib</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -10,10 +10,10 @@
             <exit_code range="1:" level="fatal" />
         </stdio>
     </xml>
-   <token name="@WRAPPER_VERSION@">1.0.0_rc1</token>
-   	<xml name="citations">
-   	     <citations>
-             <citation type="bibtex">
+   <token name="@WRAPPER_VERSION@">1.0.0_rc3</token>
+       <xml name="citations">
+           <citations>
+               <citation type="bibtex">
 @misc{Garrison2015,
   author = {Garrison, Erik},
   year = {2015},
@@ -22,8 +22,8 @@
   journal = {GitHub repository},
   url = {https://github.com/ekg/vcflib},
 }
-             </citation>
-   	     </citations>
-   	</xml>
+            </citation>
+        </citations>
+        </xml>
     <token name="@IS_PART_OF_VCFLIB@">is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).</token>
 </macros>
diff -r 9edfe5145ba8 -r aea8e90ad788 vcfbedintersect.xml
--- a/vcfbedintersect.xml	Mon Mar 26 12:21:18 2018 -0400
+++ b/vcfbedintersect.xml	Thu Jan 23 08:05:00 2020 -0500
@@ -7,9 +7,9 @@
     <expand macro="stdio" />
     <command>
         #if str($bed_vs_interval.bed_vs_interval_selector) == "bed":
-            vcfintersect -b "${bed_vs_interval.bed_input}" ${invert} "${vcf_input}" > "${out_file1}"
+            vcfintersect -b '${bed_vs_interval.bed_input}' ${invert} '${vcf_input}' > '${out_file1}'
         #else:
-            vcfintersect -R "${bed_vs_interval.int_input}" ${invert} "${vcf_input}" > "${out_file1}"
+            vcfintersect -R '${bed_vs_interval.int_input}' ${invert} '${vcf_input}' > '${out_file1}'
         #end if
     </command>
     <inputs>