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comparison test-data/vcfbreakcreatemulti-test1.vcf @ 1:3aa04b92957f draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfbreakcreatemulti commit 0b9b6512272b82637c2f1e831367e89aed77ae79
author devteam
date Thu, 15 Sep 2016 16:04:07 -0400
parents f0dae4ac267e
children
comparison
equal deleted inserted replaced
0:f0dae4ac267e 1:3aa04b92957f
22 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001 NA00002 NA00003 22 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001 NA00002 NA00003
23 19 111 . A C 9.6 . . GT:HQ 0|0:10,10 0|0:10,10 0/1:3,3 23 19 111 . A C 9.6 . . GT:HQ 0|0:10,10 0|0:10,10 0/1:3,3
24 19 112 . A G 10 . . GT:HQ 0|0:10,10 0|0:10,10 0/1:3,3 24 19 112 . A G 10 . . GT:HQ 0|0:10,10 0|0:10,10 0/1:3,3
25 20 14370 rs6054257 G A 29 PASS AF=0.5;DP=14;NS=3;DB;H2 GT:GQ:DP:HQ 0|0:48:1:51,51 1|0:48:8:51,51 1/1:43:5:.,. 25 20 14370 rs6054257 G A 29 PASS AF=0.5;DP=14;NS=3;DB;H2 GT:GQ:DP:HQ 0|0:48:1:51,51 1|0:48:8:51,51 1/1:43:5:.,.
26 20 17330 . T A 3 q10 AF=0.017;DP=11;NS=3 GT:GQ:DP:HQ 0|0:49:3:58,50 0|1:3:5:65,3 0/0:41:3:.,. 26 20 17330 . T A 3 q10 AF=0.017;DP=11;NS=3 GT:GQ:DP:HQ 0|0:49:3:58,50 0|1:3:5:65,3 0/0:41:3:.,.
27 20 1110696 rs6040355 A G 67 PASS AA=T;AF=0.333,0.667;DP=10;NS=2;DB GT:GQ:DP:HQ ./1:21:6:23,27 ./1:2:0:18,2 ./.:35:4:.,. 27 20 1110696 rs6040355 A G 67 PASS AA=T;AF=0.333,0.667;DP=10;NS=2;DB GT:GQ:DP:HQ 1|.:21:6:23,27 .|1:2:0:18,2 ./.:35:4:.,.
28 20 1110696 rs6040355 A T 67 PASS AA=T;AF=0.333,0.667;DP=10;NS=2;DB GT:GQ:DP:HQ ./1:21:6:23,27 ./1:2:0:18,2 1/1:35:4:.,. 28 20 1110696 rs6040355 A T 67 PASS AA=T;AF=0.333,0.667;DP=10;NS=2;DB GT:GQ:DP:HQ .|1:21:6:23,27 1|.:2:0:18,2 1/1:35:4:.,.
29 20 1230237 . T . 47 PASS AA=T;DP=13;NS=3 GT:GQ:DP:HQ 0|0:54:.:56,60 0|0:48:4:51,51 0/0:61:2:.,. 29 20 1230237 . T . 47 PASS AA=T;DP=13;NS=3 GT:GQ:DP:HQ 0|0:54:.:56,60 0|0:48:4:51,51 0/0:61:2:.,.
30 20 1234567 microsat1 G GA 50 PASS AA=G;AC=3,1;AN=6;DP=9;NS=3 GT:GQ:DP 0/1:.:4 ./0:17:2 1/1:40:3 30 20 1234567 microsat1 G GA 50 PASS AA=G;AC=3,1;AN=6;DP=9;NS=3 GT:GQ:DP 0/1:.:4 ./0:17:2 1/1:40:3
31 20 1234567 microsat1 G GAC 50 PASS AA=G;AC=3,1;AN=6;DP=9;NS=3 GT:GQ:DP ./0:.:4 0/1:17:2 ./.:40:3 31 20 1234567 microsat1 G GAC 50 PASS AA=G;AC=3,1;AN=6;DP=9;NS=3 GT:GQ:DP ./0:.:4 0/1:17:2 ./.:40:3
32 20 1235237 . T . 0 . . GT 0/0 0|0 . 32 20 1235237 . T . 0 . . GT 0/0 0|0 ./.
33 X 10 rsTest AC A 10 PASS . GT 0 0/1 ./0 33 X 10 rsTest AC A 10 PASS . GT 0 0/1 0|.
34 X 10 rsTest AC ATG 10 PASS . GT 0 ./0 0/1 34 X 10 rsTest AC ATG 10 PASS . GT 0 ./0 0|1