# HG changeset patch
# User iuc
# Date 1579784752 18000
# Node ID 2968c69165791fa5589fabc06f3207a3b7502983
# Parent 5e850c85ba32f6c962d9a249f45970f571546482
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfcheck commit 36e9065027cc7bf721e9d203208477ee88906c57"
diff -r 5e850c85ba32 -r 2968c6916579 macros.xml
--- a/macros.xml Mon Mar 26 12:22:22 2018 -0400
+++ b/macros.xml Thu Jan 23 08:05:52 2020 -0500
@@ -1,7 +1,7 @@
- vcflib
+ vcflib
@@ -10,10 +10,10 @@
- 1.0.0_rc1
-
-
-
+ 1.0.0_rc3
+
+
+
@misc{Garrison2015,
author = {Garrison, Erik},
year = {2015},
@@ -22,8 +22,8 @@
journal = {GitHub repository},
url = {https://github.com/ekg/vcflib},
}
-
-
-
+
+
+
is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).
diff -r 5e850c85ba32 -r 2968c6916579 vcfcheck.xml
--- a/vcfcheck.xml Mon Mar 26 12:22:22 2018 -0400
+++ b/vcfcheck.xml Thu Jan 23 08:05:52 2020 -0500
@@ -7,14 +7,15 @@
-
+ "${out_file1}"
+ vcfcheck $failure_selector -f '${reference_fasta_filename}' '${input_vcf}' > '${out_file1}'
+ ]]>