Mercurial > repos > devteam > vcfcommonsamples
annotate vcfcommonsamples.xml @ 4:f1852ecef841 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfcommonsamples commit 36e9065027cc7bf721e9d203208477ee88906c57"
author | iuc |
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date | Thu, 23 Jan 2020 08:06:43 -0500 |
parents | 254f285dbaaa |
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254f285dbaaa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfcommonsamples commit c2af291b241e37e0a55adbc1fc72a9fa37d93582
iuc
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1 <tool id="vcfcommonsamples" name="VCFcommonSamples:" version="@WRAPPER_VERSION@+galaxy0"> |
2
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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2 <description>Output records belonging to samples common between two datasets</description> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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3 <macros> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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4 <import>macros.xml</import> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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5 </macros> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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6 <expand macro="requirements"/> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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7 <expand macro="stdio" /> |
4
f1852ecef841
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfcommonsamples commit 36e9065027cc7bf721e9d203208477ee88906c57"
iuc
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8 <command>vcfcommonsamples '${input1}' '${input2}' > '${out_file1}'</command> |
2
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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9 <inputs> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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10 <param format="vcf" name="input1" type="data" label="First dataset"/> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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11 <param format="vcf" name="input2" type="data" label="Second dataset"/> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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12 </inputs> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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13 <outputs> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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14 <data format="vcf" name="out_file1" /> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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15 </outputs> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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16 <tests> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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17 <test> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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18 <param name="input1" value="vcflib.vcf"/> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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19 <param name="input2" value="vcfcommonsamples-test1-input2.vcf"/> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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20 <output name="out_file1" file="vcfcommonsamples-test1.vcf"/> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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21 </test> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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22 </tests> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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23 <help> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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24 |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
devteam
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25 Outputs each record in the first file, removing samples not present in the second. |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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26 |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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27 ---- |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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28 |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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29 Vcfcommonsamples @IS_PART_OF_VCFLIB@ |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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30 </help> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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31 <expand macro="citations" /> |
d58a307b9cef
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcommonsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
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32 </tool> |