view vcfcommonsamples.xml @ 0:202ff1d8c57f draft

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<tool id="vcfcommonsamples" name="VCFcommonSamples:" version="0.0.3">
  <description>Output records belonging to samples commong between two datasets</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"></expand>
  <expand macro="stdio" />
  <command>vcfcommonsamples "${input1}" "${input2}" > "${out_file1}"</command>
  <inputs>
    <param format="vcf" name="input1" type="data" label="First dataset"/>
    <param format="vcf" name="input2" type="data" label="Second dataset"/>
  </inputs>
  <outputs>
    <data format="vcf" name="out_file1" />
  </outputs>
  <tests>
    <test>
      <param name="input1" value="vcflib.vcf"/>
      <param name="input2" value="vcfcommonsamples-test1-input2.vcf"/>
      <output name="out_file1" file="vcfcommonsamples-test1.vcf"/>
    </test>
    </tests>
  <help>

Outputs each record in the first file, removing samples not present in the second.

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Vcfcommonsamples @IS_PART_OF_VCFLIB@
</help>
  <expand macro="citations" />
</tool>