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changeset 2:5822b40f3037 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfdistance commit 36e9065027cc7bf721e9d203208477ee88906c57"
author iuc
date Thu, 23 Jan 2020 08:06:59 -0500
parents 48e458c721b3
children
files macros.xml vcfdistance.xml
diffstat 2 files changed, 10 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Thu Sep 15 16:05:01 2016 -0400
+++ b/macros.xml	Thu Jan 23 08:06:59 2020 -0500
@@ -1,7 +1,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="1.0.0_rc1">vcflib</requirement>
+            <requirement type="package" version="1.0.0_rc3">vcflib</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -10,10 +10,10 @@
             <exit_code range="1:" level="fatal" />
         </stdio>
     </xml>
-   <token name="@WRAPPER_VERSION@">1.0.0_rc1</token>
-   	<xml name="citations">
-   	     <citations>
-             <citation type="bibtex">
+   <token name="@WRAPPER_VERSION@">1.0.0_rc3</token>
+       <xml name="citations">
+           <citations>
+               <citation type="bibtex">
 @misc{Garrison2015,
   author = {Garrison, Erik},
   year = {2015},
@@ -22,8 +22,8 @@
   journal = {GitHub repository},
   url = {https://github.com/ekg/vcflib},
 }
-             </citation>
-   	     </citations>
-   	</xml>
+            </citation>
+        </citations>
+        </xml>
     <token name="@IS_PART_OF_VCFLIB@">is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).</token>
 </macros>
--- a/vcfdistance.xml	Thu Sep 15 16:05:01 2016 -0400
+++ b/vcfdistance.xml	Thu Jan 23 08:06:59 2020 -0500
@@ -1,11 +1,11 @@
-<tool id="vcfdistance" name="VCFdistance:" version="@WRAPPER_VERSION@.0">
+<tool id="vcfdistance" name="VCFdistance:" version="@WRAPPER_VERSION@+galaxy0">
   <description>Calculate distance to the nearest variant</description>
   <macros>
     <import>macros.xml</import>
   </macros>
   <expand macro="requirements"/>
   <expand macro="stdio" />
-  <command>cat "${input1}" | vcfdistance > "${out_file1}"</command>
+  <command>cat '${input1}' | vcfdistance > '${out_file1}'</command>
   <inputs>
     <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>
   </inputs>