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comparison vcffilter.xml @ 1:e729e584cd6f draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcffilter commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:59:23 -0500
parents 34c3b846e0b6
children 2d3c06c7e1f9
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0:34c3b846e0b6 1:e729e584cd6f
14 tabix -p vcf input1.vcf.gz && 14 tabix -p vcf input1.vcf.gz &&
15 vcffilter ${filterList} input1.vcf.gz > "${out_file1}" 15 vcffilter ${filterList} input1.vcf.gz > "${out_file1}"
16 </command> 16 </command>
17 17
18 <inputs> 18 <inputs>
19 <param name="filterList" size="40" type="text" value="-f &quot;DP &gt; 10&quot;" label="Specify filterting expression" help="See explanation of filtering options below"> 19 <param name="filterList" type="text" value="-f &quot;DP &gt; 10&quot;" label="Specify filterting expression" help="See explanation of filtering options below">
20 <sanitizer> 20 <sanitizer>
21 <valid initial="string.printable"> 21 <valid initial="string.printable">
22 <remove value="&apos;"/> 22 <remove value="&apos;"/>
23 </valid> 23 </valid>
24 <mapping initial="none"> 24 <mapping initial="none">