Mercurial > repos > devteam > vcffilter
changeset 7:eae7c08ebb6f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcffilter commit de12f177c2b5ee215ce2c5d48c801406944e3a00
author | iuc |
---|---|
date | Thu, 02 May 2019 18:33:46 -0400 |
parents | 9442e22779ca |
children | 81972652519c |
files | vcffilter.xml |
diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/vcffilter.xml Thu Mar 14 17:49:22 2019 -0400 +++ b/vcffilter.xml Thu May 02 18:33:46 2019 -0400 @@ -86,13 +86,13 @@ (e.g., 'Info filter' or 'Genotype filter'), and specify filter value according to the following pattern:: -- For 'Info filter (-f)':: {ID} {operator} {value} + - For 'Info filter (-f)':: {ID} {operator} {value} For instance:: DP > 10 -- For 'Genotype fields (-g)':: {ID} {operator} {value} + - For 'Genotype fields (-g)':: {ID} {operator} {value} For instance:: GT = 1|1 -- For 'Flag' fields (when 'Info filter (-f)' is selected for filter type field):: {value} + - For 'Flag' fields (when 'Info filter (-f)' is selected for filter type field):: {value} For instance:: CpG Any number of filters may be specified. They are combined via logical AND unless the --or option is specified. For convenience, you can specify "QUAL" to refer to the quality of the site, even though it does not appear in the INFO fields.