# HG changeset patch
# User iuc
# Date 1579784939 18000
# Node ID a3dea556218d90ce9d55214a99d6358bd14d712e
# Parent b890055e07bdb54a86cbaf5af1a69f8c1620b31b
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfgeno2haplo commit 36e9065027cc7bf721e9d203208477ee88906c57"
diff -r b890055e07bd -r a3dea556218d macros.xml
--- a/macros.xml Mon Mar 26 12:26:30 2018 -0400
+++ b/macros.xml Thu Jan 23 08:08:59 2020 -0500
@@ -1,7 +1,7 @@
- vcflib
+ vcflib
@@ -10,10 +10,10 @@
- 1.0.0_rc1
-
-
-
+ 1.0.0_rc3
+
+
+
@misc{Garrison2015,
author = {Garrison, Erik},
year = {2015},
@@ -22,8 +22,8 @@
journal = {GitHub repository},
url = {https://github.com/ekg/vcflib},
}
-
-
-
+
+
+
is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).
diff -r b890055e07bd -r a3dea556218d vcfgeno2haplo.xml
--- a/vcfgeno2haplo.xml Mon Mar 26 12:26:30 2018 -0400
+++ b/vcfgeno2haplo.xml Thu Jan 23 08:08:59 2020 -0500
@@ -5,14 +5,15 @@
-
+ "${out_file1}"
+ vcfgeno2haplo ${output_option} -w ${window_size} -r "${reference_fasta_filename}" "${input_vcf}" > "${out_file1}"
+ ]]>
@@ -24,23 +25,23 @@
-
+
-
-
-
+
+
+
-
+
-
@@ -56,7 +57,7 @@
-
+
Convert genotype-based phased alleles within a window size specified by -w option into haplotype alleles. Will break haplotype construction when encountering non-phased genotypes on input.