comparison vcfleftalign.xml @ 2:8e02d116b0f9 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfleftalign commit 0b9b6512272b82637c2f1e831367e89aed77ae79

1:4dba4b988d0a

<tool id="vcfleftalign" name="VCFleftAlign:" version="0.0.3">
  <description>Left-align indels and complex variants in VCF dataset</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"></expand>
  <expand macro="stdio"></expand>
  <command>
    #set $reference_fasta_filename = "localref.fa"
    #if str( $reference_source.reference_source_selector ) == "history":
       ln -s "${reference_source.ref_file}" "${reference_fasta_filename}" &amp;&amp;
    #else:

2:8e02d116b0f9

<tool id="vcfleftalign" name="VCFleftAlign:" version="@WRAPPER_VERSION@.0">
  <description>Left-align indels and complex variants in VCF dataset</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <expand macro="stdio" />
  <command>
    #set $reference_fasta_filename = "localref.fa"
    #if str( $reference_source.reference_source_selector ) == "history":
       ln -s "${reference_source.ref_file}" "${reference_fasta_filename}" &amp;&amp;
    #else: