comparison test-data/vcfprimers-test1.fasta @ 0:67a4da1a4df3 draft

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0:67a4da1a4df3

>phiX174_1015_LEFT
ATTCA
>phiX174_1015_RIGHT
ACTGG
>phiX174_1016_LEFT
TTCAA
>phiX174_1016_RIGHT
CTGGC
>phiX174_1038_LEFT
GCCGC
>phiX174_1038_RIGHT
TGACC
>phiX174_1045_LEFT
GACCT
>phiX174_1045_RIGHT
TCCCA
>phiX174_1048_LEFT
CTTTC
>phiX174_1048_RIGHT
CATCT
>phiX174_1050_LEFT
TTCCC
>phiX174_1050_RIGHT
TCTTG
>phiX174_1051_LEFT
TCCCA
>phiX174_1051_RIGHT
CTTGG
>phiX174_1054_LEFT
CATCT
>phiX174_1054_RIGHT
GGCTT
>phiX174_1076_LEFT
AGATT
>phiX174_1076_RIGHT
GTCGT
>phiX174_1080_LEFT
TGGTC
>phiX174_1080_RIGHT
TCTTA
>phiX174_1092_LEFT
TACCA
>phiX174_1092_RIGHT
TTCAA
>phiX174_1093_LEFT
ACCAT
>phiX174_1093_RIGHT
TCAAC
>phiX174_1102_LEFT
ACTAC
>phiX174_1102_RIGHT
CCGGT
>phiX174_1107_LEFT
TCCGG
>phiX174_1107_RIGHT
TATCG
>phiX174_1110_LEFT
GGTTA
>phiX174_1110_RIGHT
CGCTG
>phiX174_1121_LEFT
GCGAC
>phiX174_1121_RIGHT
CCTTC
>phiX174_1124_LEFT
ACTCC
>phiX174_1124_RIGHT
TCGAG
>phiX174_1125_LEFT
CTCCT
>phiX174_1125_RIGHT
CGAGA
>phiX174_1131_LEFT
CGAGA
>phiX174_1131_RIGHT
GGACG
>phiX174_1141_LEFT
GCCGT
>phiX174_1141_RIGHT
GGCGC
>phiX174_1145_LEFT
TTGGC
>phiX174_1145_RIGHT
CTCTC
>phiX174_1147_LEFT
GGCGC
>phiX174_1147_RIGHT
CTCCG
>phiX174_1149_LEFT
CGCTC
>phiX174_1149_RIGHT
CCGTC
>phiX174_1156_LEFT
CGTCT
>phiX174_1156_RIGHT
TCTCC
>phiX174_1159_LEFT
CTTTC
>phiX174_1159_RIGHT
CCATT
>phiX174_1164_LEFT
TCCAT
>phiX174_1164_RIGHT
GCGTC
>phiX174_1168_LEFT
TTGCG
>phiX174_1168_RIGHT
CGTGG
>phiX174_1171_LEFT
CGTCG
>phiX174_1171_RIGHT
GGCCT
>phiX174_1174_LEFT
CGTGG
>phiX174_1174_RIGHT
CTTGC
>phiX174_1178_LEFT
GCCTT
>phiX174_1178_RIGHT
CTATT
>phiX174_1187_LEFT
TTGAC
>phiX174_1187_RIGHT
CTACT
>phiX174_1189_LEFT
GACTC
>phiX174_1189_RIGHT
ACTGT
>phiX174_1200_LEFT
AGACA
>phiX174_1200_RIGHT
TTTTA
>phiX174_1202_LEFT
ACATT
>phiX174_1202_RIGHT
TTACT
>phiX174_1205_LEFT
TTTTT
>phiX174_1205_RIGHT
CTTTT
>phiX174_1207_LEFT
TTTAC
>phiX174_1207_RIGHT
TTTTA
>phiX174_1214_LEFT
TTTAT
>phiX174_1214_RIGHT
TCCCT
>phiX174_1216_LEFT
TATGT
>phiX174_1216_RIGHT
CCTCA
>phiX174_1217_LEFT
ATGTC
>phiX174_1217_RIGHT
CTCAT
>phiX174_1219_LEFT
GTCCC
>phiX174_1219_RIGHT
CATCG
>phiX174_1223_LEFT
CTCAT
>phiX174_1223_RIGHT
GTCAC
>phiX174_1227_LEFT
TCGTC
>phiX174_1227_RIGHT
CGTTT
>phiX174_1232_LEFT
ACGTT
>phiX174_1232_RIGHT
ATGGT
>phiX174_1236_LEFT
TTATG
>phiX174_1236_RIGHT
TGAAC
>phiX174_1237_LEFT
TATGG
>phiX174_1237_RIGHT
GAACA
>phiX174_1240_LEFT
GGTGA
>phiX174_1240_RIGHT
CAGTG
>phiX174_1245_LEFT
ACAGT
>phiX174_1245_RIGHT
GATTA
>phiX174_1247_LEFT
AGTGG
>phiX174_1247_RIGHT
TTAAG
>phiX174_1250_LEFT
GGATT
>phiX174_1250_RIGHT
AGTTC
>phiX174_1251_LEFT
GATTA
>phiX174_1251_RIGHT
GTTCA
>phiX174_1253_LEFT
TTAAG
>phiX174_1253_RIGHT
TCATG
>phiX174_1257_LEFT
GTTCA
>phiX174_1257_RIGHT
GAAGG
>phiX174_1259_LEFT
TCATG
>phiX174_1259_RIGHT
AGGAT
>phiX174_1274_LEFT
TTAAT
>phiX174_1274_RIGHT
CCACT
>phiX174_1277_LEFT
ATGCC
>phiX174_1277_RIGHT
CTCCT
>phiX174_1279_LEFT
GCCAC
>phiX174_1279_RIGHT
CCTCT
>phiX174_1284_LEFT
TCCTC
>phiX174_1284_RIGHT
CCCGA
>phiX174_1289_LEFT
TCCCG
>phiX174_1289_RIGHT
CTGTT
>phiX174_1296_LEFT
TGTTA
>phiX174_1296_RIGHT
CACTA
>phiX174_1298_LEFT
TTAAC
>phiX174_1298_RIGHT
CTACT
>phiX174_1306_LEFT
ACTGG
>phiX174_1306_RIGHT
TATAT
>phiX174_1307_LEFT
CTGGT
>phiX174_1307_RIGHT
ATATT
>phiX174_1314_LEFT
TATTG
>phiX174_1314_RIGHT
CCATG
>phiX174_1317_LEFT
TGACC
>phiX174_1317_RIGHT
TGCCG
>phiX174_1320_LEFT
CCATG
>phiX174_1320_RIGHT
CGCTT
>phiX174_1322_LEFT
ATGCC
>phiX174_1322_RIGHT
CTTTT
>phiX174_1323_LEFT
TGCCG
>phiX174_1323_RIGHT
TTTTC
>phiX174_1329_LEFT
TTTTC
>phiX174_1329_RIGHT
TGGCA
>phiX174_1335_LEFT
TGGCA
>phiX174_1335_RIGHT
GATTA
>phiX174_1338_LEFT
CACGA
>phiX174_1338_RIGHT
TAACC
>phiX174_1345_LEFT
AACCC
>phiX174_1345_RIGHT
GATAC
>phiX174_1347_LEFT
CCCTG
>phiX174_1347_RIGHT
TACCA
>phiX174_1348_LEFT
CCTGA
>phiX174_1348_RIGHT
ACCAA
>phiX174_1352_LEFT
ATACC
>phiX174_1352_RIGHT
ATAAA
>phiX174_1354_LEFT
ACCAA
>phiX174_1354_RIGHT
AAAAT
>phiX174_1359_LEFT
TAAAA
>phiX174_1359_RIGHT
CCCTA
>phiX174_1366_LEFT
CCTAA
>phiX174_1366_RIGHT
CATTT
>phiX174_1370_LEFT
AGCAT
>phiX174_1370_RIGHT
TGTTT
>phiX174_1373_LEFT
ATTTG
>phiX174_1373_RIGHT
TTCAG
>phiX174_1380_LEFT
TCAGG
>phiX174_1380_RIGHT
TTATT
>phiX174_1381_LEFT
CAGGG
>phiX174_1381_RIGHT
TATTT
>phiX174_1384_LEFT
GGTTA
>phiX174_1384_RIGHT
TTGAA
>phiX174_1385_LEFT
GTTAT
>phiX174_1385_RIGHT
TGAAT
>phiX174_1391_LEFT
TGAAT
>phiX174_1391_RIGHT
TCTAT
>phiX174_1393_LEFT
AATAT
>phiX174_1393_RIGHT
TATAA
>phiX174_1396_LEFT
ATCTA
>phiX174_1396_RIGHT
AACAA
>phiX174_1397_LEFT
TCTAT
>phiX174_1397_RIGHT
ACAAC
>phiX174_1400_LEFT
ATAAC
>phiX174_1400_RIGHT
ACTAT
>phiX174_1401_LEFT
TAACA
>phiX174_1401_RIGHT
CTATT
>phiX174_1434_LEFT
CCGTA
>phiX174_1434_RIGHT
CGAGG
>phiX174_1438_LEFT
ACCGA
>phiX174_1438_RIGHT
GCTAA
>phiX174_1450_LEFT
CCTAA
>phiX174_1450_RIGHT
GAGCT
>phiX174_1459_LEFT
CTTAA
>phiX174_1459_RIGHT
CAAGA
>phiX174_1470_LEFT
TGATG
>phiX174_1470_RIGHT
TCGTT
>phiX174_1484_LEFT
GTTTC
>phiX174_1484_RIGHT
GTTGC
>phiX174_1487_LEFT
TCCGT
>phiX174_1487_RIGHT
GCTGC
>phiX174_1491_LEFT
TTGCT
>phiX174_1491_RIGHT
CCATC
>phiX174_1503_LEFT
CAAAA
>phiX174_1503_RIGHT
CATTT
>phiX174_1536_LEFT
GACTG
>phiX174_1536_RIGHT
GCTTT
>phiX174_1541_LEFT
AGCTT
>phiX174_1541_RIGHT
CTCGC
>phiX174_1553_LEFT
AAATG
>phiX174_1553_RIGHT
CGACT
>phiX174_1566_LEFT
TACCA
>phiX174_1566_RIGHT
ATCTA
>phiX174_1572_LEFT
ATCTA
>phiX174_1572_RIGHT
TGACA
>phiX174_1574_LEFT
CTATT
>phiX174_1574_RIGHT
ACATT
>phiX174_1575_LEFT
TATTG
>phiX174_1575_RIGHT
CATTA
>phiX174_1577_LEFT
TTGAC
>phiX174_1577_RIGHT
TTATG
>phiX174_1581_LEFT
CATTA
>phiX174_1581_RIGHT
GGGTC
>phiX174_1591_LEFT
CTGCA
>phiX174_1591_RIGHT
GCTGC
>phiX174_1597_LEFT
GCTGC
>phiX174_1597_RIGHT
TATGC
>phiX174_1603_LEFT
TATGC
>phiX174_1603_RIGHT
AATTT
>phiX174_1606_LEFT
GCTAA
>phiX174_1606_RIGHT
TTGCA
>phiX174_1611_LEFT
TTTGC
>phiX174_1611_RIGHT
TACTG
>phiX174_1613_LEFT
TGCAT
>phiX174_1613_RIGHT
CTGAC
>phiX174_1618_LEFT
ACTGA
>phiX174_1618_RIGHT
CAAGA
>phiX174_1619_LEFT
CTGAC
>phiX174_1619_RIGHT
AAGAA
>phiX174_1621_LEFT
GACCA
>phiX174_1621_RIGHT
GAACG
>phiX174_1622_LEFT
ACCAA
>phiX174_1622_RIGHT
AACGT
>phiX174_1624_LEFT
CAAGA
>phiX174_1624_RIGHT
CGTGA
>phiX174_1627_LEFT
GAACG
>phiX174_1627_RIGHT
GATTA
>phiX174_1630_LEFT
CGTGA
>phiX174_1630_RIGHT
TACTT
>phiX174_1632_LEFT
TGATT
>phiX174_1632_RIGHT
CTTCA
>phiX174_1634_LEFT
ATTAC
>phiX174_1634_RIGHT
TCATG
>phiX174_1635_LEFT
TTACT
>phiX174_1635_RIGHT
CATGC
>phiX174_1639_LEFT
TTCAT
>phiX174_1639_RIGHT
CAGCG
>phiX174_1645_LEFT
CAGCG
>phiX174_1645_RIGHT
TACCg
>phiX174_1647_LEFT
GCGTT
>phiX174_1647_RIGHT
CCgTG
>phiX174_1652_LEFT
ACCgT
>phiX174_1652_RIGHT
ATGTT
>phiX174_1656_LEFT
TGATG
>phiX174_1656_RIGHT
TATTT
>phiX174_1658_LEFT
ATGTT
>phiX174_1658_RIGHT
TTTCT
>phiX174_1659_LEFT
TGTTA
>phiX174_1659_RIGHT
TTCTT
>phiX174_1663_LEFT
ATTTC
>phiX174_1663_RIGHT
TCATT
>phiX174_1665_LEFT
TTCTT
>phiX174_1665_RIGHT
ATTTG
>phiX174_1670_LEFT
CATTT
>phiX174_1670_RIGHT
GAGGT
>phiX174_1671_LEFT
ATTTG
>phiX174_1671_RIGHT
AGGTA
>phiX174_1672_LEFT
TTTGG
>phiX174_1672_RIGHT
GGTAA
>phiX174_1673_LEFT
TTGGA
>phiX174_1673_RIGHT
GTAAA
>phiX174_1674_LEFT
TGGAG
>phiX174_1674_RIGHT
TAAAA
>phiX174_1677_LEFT
AGGTA
>phiX174_1677_RIGHT
AACCT
>phiX174_1678_LEFT
GGTAA
>phiX174_1678_RIGHT
ACCTC
>phiX174_1682_LEFT
AAACC
>phiX174_1682_RIGHT
CTTAT
>phiX174_1685_LEFT
CCTCT
>phiX174_1685_RIGHT
ATGAC
>phiX174_1686_LEFT
CTCTT
>phiX174_1686_RIGHT
TGACG
>phiX174_1687_LEFT
TCTTA
>phiX174_1687_RIGHT
GACGC
>phiX174_1688_LEFT
CTTAT
>phiX174_1688_RIGHT
ACGCT
>phiX174_1689_LEFT
TTATG
>phiX174_1689_RIGHT
CGCTG
>phiX174_1691_LEFT
ATGAC
>phiX174_1691_RIGHT
CTGAC
>phiX174_1693_LEFT
GACGC
>phiX174_1693_RIGHT
GACAA
>phiX174_1695_LEFT
CGCTG
>phiX174_1695_RIGHT
CAACC
>phiX174_1702_LEFT
AACCG
>phiX174_1702_RIGHT
CCTTT
>phiX174_1707_LEFT
TCCTT
>phiX174_1707_RIGHT
ACTTG
>phiX174_1708_LEFT
CCTTT
>phiX174_1708_RIGHT
CTTGT
>phiX174_1710_LEFT
TTTAC
>phiX174_1710_RIGHT
TGTCA
>phiX174_1723_LEFT
CGCTC
>phiX174_1723_RIGHT
AATCT
>phiX174_1724_LEFT
GCTCT
>phiX174_1724_RIGHT
ATCTC
>phiX174_1725_LEFT
CTCTA
>phiX174_1725_RIGHT
TCTCT
>phiX174_1726_LEFT
TCTAA
>phiX174_1726_RIGHT
CTCTG
>phiX174_1730_LEFT
ATCTC
>phiX174_1730_RIGHT
GGGCA
>phiX174_1739_LEFT
CATCT
>phiX174_1739_RIGHT
GCTAT
>phiX174_1746_LEFT
CTATG
>phiX174_1746_RIGHT
TGTTG
>phiX174_1749_LEFT
TGATG
>phiX174_1749_RIGHT
TGATG
>phiX174_1755_LEFT
TGATG
>phiX174_1755_RIGHT
AACTG
>phiX174_1756_LEFT
GATGG
>phiX174_1756_RIGHT
ACTGA
>phiX174_1761_LEFT
AACTG
>phiX174_1761_RIGHT
CCAAA
>phiX174_1764_LEFT
TGACC
>phiX174_1764_RIGHT
AACGT
>phiX174_1766_LEFT
ACCAA
>phiX174_1766_RIGHT
CGTCG
>phiX174_1769_LEFT
AAACG
>phiX174_1769_RIGHT
CGTTA
>phiX174_1771_LEFT
ACGTC
>phiX174_1771_RIGHT
TTAGG
>phiX174_1772_LEFT
CGTCG
>phiX174_1772_RIGHT
TAGGC
>phiX174_1774_LEFT
TCGTT
>phiX174_1774_RIGHT
GGCCA
>phiX174_1775_LEFT
CGTTA
>phiX174_1775_RIGHT
GCCAG
>phiX174_1776_LEFT
GTTAG
>phiX174_1776_RIGHT
CCAGT
>phiX174_1778_LEFT
TAGGC
>phiX174_1778_RIGHT
AGTTT
>phiX174_1779_LEFT
AGGCC
>phiX174_1779_RIGHT
GTTTT
>phiX174_1781_LEFT
GCCAG
>phiX174_1781_RIGHT
TTTCT
>phiX174_1782_LEFT
CCAGT
>phiX174_1782_RIGHT
TTCTG
>phiX174_1783_LEFT
CAGTT
>phiX174_1783_RIGHT
TCTGG
>phiX174_1788_LEFT
TTCTG
>phiX174_1788_RIGHT
TCGTG
>phiX174_1792_LEFT
GGTCG
>phiX174_1792_RIGHT
GTTCA
>phiX174_1802_LEFT
AACAG
>phiX174_1802_RIGHT
CCTAT
>phiX174_1804_LEFT
CAGAC
>phiX174_1804_RIGHT
TATAA
>phiX174_1805_LEFT
AGACC
>phiX174_1805_RIGHT
ATAAA
>phiX174_1806_LEFT
GACCT
>phiX174_1806_RIGHT
TAAAC
>phiX174_1824_LEFT
GCCGC
>phiX174_1824_RIGHT
TTTCT
>phiX174_1825_LEFT
CCGCG
>phiX174_1825_RIGHT
TTCTT
>phiX174_1833_LEFT
CTTTG
>phiX174_1833_RIGHT
TCCTG
>phiX174_1843_LEFT
GAGCA
>phiX174_1843_RIGHT
GGCAC
>phiX174_1847_LEFT
ATGGC
>phiX174_1847_RIGHT
CTATG
>phiX174_1854_LEFT
TATGT
>phiX174_1854_RIGHT
TACTC
>phiX174_1860_LEFT
TACTC
>phiX174_1860_RIGHT
TGCGC
>phiX174_1863_LEFT
TCTTG
>phiX174_1863_RIGHT
GCTTG
>phiX174_1866_LEFT
TGCGC
>phiX174_1866_RIGHT
TGTTC
>phiX174_1875_LEFT
TCGTT
>phiX174_1875_RIGHT
TCCGC
>phiX174_1876_LEFT
CGTTT
>phiX174_1876_RIGHT
CCGCC
>phiX174_1882_LEFT
CCGCC
>phiX174_1882_RIGHT
ACTGC
>phiX174_1889_LEFT
CTGCG
>phiX174_1889_RIGHT
CTAAA
>phiX174_1913_LEFT
TTAAC
>phiX174_1913_RIGHT
CTAAA
>phiX174_1915_LEFT
AACGC
>phiX174_1915_RIGHT
AAAGG
>phiX174_1917_LEFT
CGCTA
>phiX174_1917_RIGHT
AGGTG
>phiX174_1930_LEFT
TTGAC
>phiX174_1930_RIGHT
TATAC
>phiX174_1934_LEFT
CTTAT
>phiX174_1934_RIGHT
CCGAT
>phiX174_1940_LEFT
CCGAT
>phiX174_1940_RIGHT
TTGCT
>phiX174_1942_LEFT
GATAT
>phiX174_1942_RIGHT
GCTGG
>phiX174_1945_LEFT
ATTGC
>phiX174_1945_RIGHT
GGCGA
>phiX174_1954_LEFT
GACCC
>phiX174_1954_RIGHT
GTTTT
>phiX174_1959_LEFT
TGTTT
>phiX174_1959_RIGHT
GTATG
>phiX174_1994_LEFT
CTATG
>phiX174_1994_RIGHT
AGGAT
>phiX174_1998_LEFT
GAAGG
>phiX174_1998_RIGHT
TGTTT