diff test-data/vcfprimers-test1.fasta @ 0:67a4da1a4df3 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/vcfprimers-test1.fasta	Thu Mar 19 14:43:10 2015 -0400
@@ -0,0 +1,828 @@
+>phiX174_1015_LEFT
+ATTCA
+>phiX174_1015_RIGHT
+ACTGG
+>phiX174_1016_LEFT
+TTCAA
+>phiX174_1016_RIGHT
+CTGGC
+>phiX174_1038_LEFT
+GCCGC
+>phiX174_1038_RIGHT
+TGACC
+>phiX174_1045_LEFT
+GACCT
+>phiX174_1045_RIGHT
+TCCCA
+>phiX174_1048_LEFT
+CTTTC
+>phiX174_1048_RIGHT
+CATCT
+>phiX174_1050_LEFT
+TTCCC
+>phiX174_1050_RIGHT
+TCTTG
+>phiX174_1051_LEFT
+TCCCA
+>phiX174_1051_RIGHT
+CTTGG
+>phiX174_1054_LEFT
+CATCT
+>phiX174_1054_RIGHT
+GGCTT
+>phiX174_1076_LEFT
+AGATT
+>phiX174_1076_RIGHT
+GTCGT
+>phiX174_1080_LEFT
+TGGTC
+>phiX174_1080_RIGHT
+TCTTA
+>phiX174_1092_LEFT
+TACCA
+>phiX174_1092_RIGHT
+TTCAA
+>phiX174_1093_LEFT
+ACCAT
+>phiX174_1093_RIGHT
+TCAAC
+>phiX174_1102_LEFT
+ACTAC
+>phiX174_1102_RIGHT
+CCGGT
+>phiX174_1107_LEFT
+TCCGG
+>phiX174_1107_RIGHT
+TATCG
+>phiX174_1110_LEFT
+GGTTA
+>phiX174_1110_RIGHT
+CGCTG
+>phiX174_1121_LEFT
+GCGAC
+>phiX174_1121_RIGHT
+CCTTC
+>phiX174_1124_LEFT
+ACTCC
+>phiX174_1124_RIGHT
+TCGAG
+>phiX174_1125_LEFT
+CTCCT
+>phiX174_1125_RIGHT
+CGAGA
+>phiX174_1131_LEFT
+CGAGA
+>phiX174_1131_RIGHT
+GGACG
+>phiX174_1141_LEFT
+GCCGT
+>phiX174_1141_RIGHT
+GGCGC
+>phiX174_1145_LEFT
+TTGGC
+>phiX174_1145_RIGHT
+CTCTC
+>phiX174_1147_LEFT
+GGCGC
+>phiX174_1147_RIGHT
+CTCCG
+>phiX174_1149_LEFT
+CGCTC
+>phiX174_1149_RIGHT
+CCGTC
+>phiX174_1156_LEFT
+CGTCT
+>phiX174_1156_RIGHT
+TCTCC
+>phiX174_1159_LEFT
+CTTTC
+>phiX174_1159_RIGHT
+CCATT
+>phiX174_1164_LEFT
+TCCAT
+>phiX174_1164_RIGHT
+GCGTC
+>phiX174_1168_LEFT
+TTGCG
+>phiX174_1168_RIGHT
+CGTGG
+>phiX174_1171_LEFT
+CGTCG
+>phiX174_1171_RIGHT
+GGCCT
+>phiX174_1174_LEFT
+CGTGG
+>phiX174_1174_RIGHT
+CTTGC
+>phiX174_1178_LEFT
+GCCTT
+>phiX174_1178_RIGHT
+CTATT
+>phiX174_1187_LEFT
+TTGAC
+>phiX174_1187_RIGHT
+CTACT
+>phiX174_1189_LEFT
+GACTC
+>phiX174_1189_RIGHT
+ACTGT
+>phiX174_1200_LEFT
+AGACA
+>phiX174_1200_RIGHT
+TTTTA
+>phiX174_1202_LEFT
+ACATT
+>phiX174_1202_RIGHT
+TTACT
+>phiX174_1205_LEFT
+TTTTT
+>phiX174_1205_RIGHT
+CTTTT
+>phiX174_1207_LEFT
+TTTAC
+>phiX174_1207_RIGHT
+TTTTA
+>phiX174_1214_LEFT
+TTTAT
+>phiX174_1214_RIGHT
+TCCCT
+>phiX174_1216_LEFT
+TATGT
+>phiX174_1216_RIGHT
+CCTCA
+>phiX174_1217_LEFT
+ATGTC
+>phiX174_1217_RIGHT
+CTCAT
+>phiX174_1219_LEFT
+GTCCC
+>phiX174_1219_RIGHT
+CATCG
+>phiX174_1223_LEFT
+CTCAT
+>phiX174_1223_RIGHT
+GTCAC
+>phiX174_1227_LEFT
+TCGTC
+>phiX174_1227_RIGHT
+CGTTT
+>phiX174_1232_LEFT
+ACGTT
+>phiX174_1232_RIGHT
+ATGGT
+>phiX174_1236_LEFT
+TTATG
+>phiX174_1236_RIGHT
+TGAAC
+>phiX174_1237_LEFT
+TATGG
+>phiX174_1237_RIGHT
+GAACA
+>phiX174_1240_LEFT
+GGTGA
+>phiX174_1240_RIGHT
+CAGTG
+>phiX174_1245_LEFT
+ACAGT
+>phiX174_1245_RIGHT
+GATTA
+>phiX174_1247_LEFT
+AGTGG
+>phiX174_1247_RIGHT
+TTAAG
+>phiX174_1250_LEFT
+GGATT
+>phiX174_1250_RIGHT
+AGTTC
+>phiX174_1251_LEFT
+GATTA
+>phiX174_1251_RIGHT
+GTTCA
+>phiX174_1253_LEFT
+TTAAG
+>phiX174_1253_RIGHT
+TCATG
+>phiX174_1257_LEFT
+GTTCA
+>phiX174_1257_RIGHT
+GAAGG
+>phiX174_1259_LEFT
+TCATG
+>phiX174_1259_RIGHT
+AGGAT
+>phiX174_1274_LEFT
+TTAAT
+>phiX174_1274_RIGHT
+CCACT
+>phiX174_1277_LEFT
+ATGCC
+>phiX174_1277_RIGHT
+CTCCT
+>phiX174_1279_LEFT
+GCCAC
+>phiX174_1279_RIGHT
+CCTCT
+>phiX174_1284_LEFT
+TCCTC
+>phiX174_1284_RIGHT
+CCCGA
+>phiX174_1289_LEFT
+TCCCG
+>phiX174_1289_RIGHT
+CTGTT
+>phiX174_1296_LEFT
+TGTTA
+>phiX174_1296_RIGHT
+CACTA
+>phiX174_1298_LEFT
+TTAAC
+>phiX174_1298_RIGHT
+CTACT
+>phiX174_1306_LEFT
+ACTGG
+>phiX174_1306_RIGHT
+TATAT
+>phiX174_1307_LEFT
+CTGGT
+>phiX174_1307_RIGHT
+ATATT
+>phiX174_1314_LEFT
+TATTG
+>phiX174_1314_RIGHT
+CCATG
+>phiX174_1317_LEFT
+TGACC
+>phiX174_1317_RIGHT
+TGCCG
+>phiX174_1320_LEFT
+CCATG
+>phiX174_1320_RIGHT
+CGCTT
+>phiX174_1322_LEFT
+ATGCC
+>phiX174_1322_RIGHT
+CTTTT
+>phiX174_1323_LEFT
+TGCCG
+>phiX174_1323_RIGHT
+TTTTC
+>phiX174_1329_LEFT
+TTTTC
+>phiX174_1329_RIGHT
+TGGCA
+>phiX174_1335_LEFT
+TGGCA
+>phiX174_1335_RIGHT
+GATTA
+>phiX174_1338_LEFT
+CACGA
+>phiX174_1338_RIGHT
+TAACC
+>phiX174_1345_LEFT
+AACCC
+>phiX174_1345_RIGHT
+GATAC
+>phiX174_1347_LEFT
+CCCTG
+>phiX174_1347_RIGHT
+TACCA
+>phiX174_1348_LEFT
+CCTGA
+>phiX174_1348_RIGHT
+ACCAA
+>phiX174_1352_LEFT
+ATACC
+>phiX174_1352_RIGHT
+ATAAA
+>phiX174_1354_LEFT
+ACCAA
+>phiX174_1354_RIGHT
+AAAAT
+>phiX174_1359_LEFT
+TAAAA
+>phiX174_1359_RIGHT
+CCCTA
+>phiX174_1366_LEFT
+CCTAA
+>phiX174_1366_RIGHT
+CATTT
+>phiX174_1370_LEFT
+AGCAT
+>phiX174_1370_RIGHT
+TGTTT
+>phiX174_1373_LEFT
+ATTTG
+>phiX174_1373_RIGHT
+TTCAG
+>phiX174_1380_LEFT
+TCAGG
+>phiX174_1380_RIGHT
+TTATT
+>phiX174_1381_LEFT
+CAGGG
+>phiX174_1381_RIGHT
+TATTT
+>phiX174_1384_LEFT
+GGTTA
+>phiX174_1384_RIGHT
+TTGAA
+>phiX174_1385_LEFT
+GTTAT
+>phiX174_1385_RIGHT
+TGAAT
+>phiX174_1391_LEFT
+TGAAT
+>phiX174_1391_RIGHT
+TCTAT
+>phiX174_1393_LEFT
+AATAT
+>phiX174_1393_RIGHT
+TATAA
+>phiX174_1396_LEFT
+ATCTA
+>phiX174_1396_RIGHT
+AACAA
+>phiX174_1397_LEFT
+TCTAT
+>phiX174_1397_RIGHT
+ACAAC
+>phiX174_1400_LEFT
+ATAAC
+>phiX174_1400_RIGHT
+ACTAT
+>phiX174_1401_LEFT
+TAACA
+>phiX174_1401_RIGHT
+CTATT
+>phiX174_1434_LEFT
+CCGTA
+>phiX174_1434_RIGHT
+CGAGG
+>phiX174_1438_LEFT
+ACCGA
+>phiX174_1438_RIGHT
+GCTAA
+>phiX174_1450_LEFT
+CCTAA
+>phiX174_1450_RIGHT
+GAGCT
+>phiX174_1459_LEFT
+CTTAA
+>phiX174_1459_RIGHT
+CAAGA
+>phiX174_1470_LEFT
+TGATG
+>phiX174_1470_RIGHT
+TCGTT
+>phiX174_1484_LEFT
+GTTTC
+>phiX174_1484_RIGHT
+GTTGC
+>phiX174_1487_LEFT
+TCCGT
+>phiX174_1487_RIGHT
+GCTGC
+>phiX174_1491_LEFT
+TTGCT
+>phiX174_1491_RIGHT
+CCATC
+>phiX174_1503_LEFT
+CAAAA
+>phiX174_1503_RIGHT
+CATTT
+>phiX174_1536_LEFT
+GACTG
+>phiX174_1536_RIGHT
+GCTTT
+>phiX174_1541_LEFT
+AGCTT
+>phiX174_1541_RIGHT
+CTCGC
+>phiX174_1553_LEFT
+AAATG
+>phiX174_1553_RIGHT
+CGACT
+>phiX174_1566_LEFT
+TACCA
+>phiX174_1566_RIGHT
+ATCTA
+>phiX174_1572_LEFT
+ATCTA
+>phiX174_1572_RIGHT
+TGACA
+>phiX174_1574_LEFT
+CTATT
+>phiX174_1574_RIGHT
+ACATT
+>phiX174_1575_LEFT
+TATTG
+>phiX174_1575_RIGHT
+CATTA
+>phiX174_1577_LEFT
+TTGAC
+>phiX174_1577_RIGHT
+TTATG
+>phiX174_1581_LEFT
+CATTA
+>phiX174_1581_RIGHT
+GGGTC
+>phiX174_1591_LEFT
+CTGCA
+>phiX174_1591_RIGHT
+GCTGC
+>phiX174_1597_LEFT
+GCTGC
+>phiX174_1597_RIGHT
+TATGC
+>phiX174_1603_LEFT
+TATGC
+>phiX174_1603_RIGHT
+AATTT
+>phiX174_1606_LEFT
+GCTAA
+>phiX174_1606_RIGHT
+TTGCA
+>phiX174_1611_LEFT
+TTTGC
+>phiX174_1611_RIGHT
+TACTG
+>phiX174_1613_LEFT
+TGCAT
+>phiX174_1613_RIGHT
+CTGAC
+>phiX174_1618_LEFT
+ACTGA
+>phiX174_1618_RIGHT
+CAAGA
+>phiX174_1619_LEFT
+CTGAC
+>phiX174_1619_RIGHT
+AAGAA
+>phiX174_1621_LEFT
+GACCA
+>phiX174_1621_RIGHT
+GAACG
+>phiX174_1622_LEFT
+ACCAA
+>phiX174_1622_RIGHT
+AACGT
+>phiX174_1624_LEFT
+CAAGA
+>phiX174_1624_RIGHT
+CGTGA
+>phiX174_1627_LEFT
+GAACG
+>phiX174_1627_RIGHT
+GATTA
+>phiX174_1630_LEFT
+CGTGA
+>phiX174_1630_RIGHT
+TACTT
+>phiX174_1632_LEFT
+TGATT
+>phiX174_1632_RIGHT
+CTTCA
+>phiX174_1634_LEFT
+ATTAC
+>phiX174_1634_RIGHT
+TCATG
+>phiX174_1635_LEFT
+TTACT
+>phiX174_1635_RIGHT
+CATGC
+>phiX174_1639_LEFT
+TTCAT
+>phiX174_1639_RIGHT
+CAGCG
+>phiX174_1645_LEFT
+CAGCG
+>phiX174_1645_RIGHT
+TACCg
+>phiX174_1647_LEFT
+GCGTT
+>phiX174_1647_RIGHT
+CCgTG
+>phiX174_1652_LEFT
+ACCgT
+>phiX174_1652_RIGHT
+ATGTT
+>phiX174_1656_LEFT
+TGATG
+>phiX174_1656_RIGHT
+TATTT
+>phiX174_1658_LEFT
+ATGTT
+>phiX174_1658_RIGHT
+TTTCT
+>phiX174_1659_LEFT
+TGTTA
+>phiX174_1659_RIGHT
+TTCTT
+>phiX174_1663_LEFT
+ATTTC
+>phiX174_1663_RIGHT
+TCATT
+>phiX174_1665_LEFT
+TTCTT
+>phiX174_1665_RIGHT
+ATTTG
+>phiX174_1670_LEFT
+CATTT
+>phiX174_1670_RIGHT
+GAGGT
+>phiX174_1671_LEFT
+ATTTG
+>phiX174_1671_RIGHT
+AGGTA
+>phiX174_1672_LEFT
+TTTGG
+>phiX174_1672_RIGHT
+GGTAA
+>phiX174_1673_LEFT
+TTGGA
+>phiX174_1673_RIGHT
+GTAAA
+>phiX174_1674_LEFT
+TGGAG
+>phiX174_1674_RIGHT
+TAAAA
+>phiX174_1677_LEFT
+AGGTA
+>phiX174_1677_RIGHT
+AACCT
+>phiX174_1678_LEFT
+GGTAA
+>phiX174_1678_RIGHT
+ACCTC
+>phiX174_1682_LEFT
+AAACC
+>phiX174_1682_RIGHT
+CTTAT
+>phiX174_1685_LEFT
+CCTCT
+>phiX174_1685_RIGHT
+ATGAC
+>phiX174_1686_LEFT
+CTCTT
+>phiX174_1686_RIGHT
+TGACG
+>phiX174_1687_LEFT
+TCTTA
+>phiX174_1687_RIGHT
+GACGC
+>phiX174_1688_LEFT
+CTTAT
+>phiX174_1688_RIGHT
+ACGCT
+>phiX174_1689_LEFT
+TTATG
+>phiX174_1689_RIGHT
+CGCTG
+>phiX174_1691_LEFT
+ATGAC
+>phiX174_1691_RIGHT
+CTGAC
+>phiX174_1693_LEFT
+GACGC
+>phiX174_1693_RIGHT
+GACAA
+>phiX174_1695_LEFT
+CGCTG
+>phiX174_1695_RIGHT
+CAACC
+>phiX174_1702_LEFT
+AACCG
+>phiX174_1702_RIGHT
+CCTTT
+>phiX174_1707_LEFT
+TCCTT
+>phiX174_1707_RIGHT
+ACTTG
+>phiX174_1708_LEFT
+CCTTT
+>phiX174_1708_RIGHT
+CTTGT
+>phiX174_1710_LEFT
+TTTAC
+>phiX174_1710_RIGHT
+TGTCA
+>phiX174_1723_LEFT
+CGCTC
+>phiX174_1723_RIGHT
+AATCT
+>phiX174_1724_LEFT
+GCTCT
+>phiX174_1724_RIGHT
+ATCTC
+>phiX174_1725_LEFT
+CTCTA
+>phiX174_1725_RIGHT
+TCTCT
+>phiX174_1726_LEFT
+TCTAA
+>phiX174_1726_RIGHT
+CTCTG
+>phiX174_1730_LEFT
+ATCTC
+>phiX174_1730_RIGHT
+GGGCA
+>phiX174_1739_LEFT
+CATCT
+>phiX174_1739_RIGHT
+GCTAT
+>phiX174_1746_LEFT
+CTATG
+>phiX174_1746_RIGHT
+TGTTG
+>phiX174_1749_LEFT
+TGATG
+>phiX174_1749_RIGHT
+TGATG
+>phiX174_1755_LEFT
+TGATG
+>phiX174_1755_RIGHT
+AACTG
+>phiX174_1756_LEFT
+GATGG
+>phiX174_1756_RIGHT
+ACTGA
+>phiX174_1761_LEFT
+AACTG
+>phiX174_1761_RIGHT
+CCAAA
+>phiX174_1764_LEFT
+TGACC
+>phiX174_1764_RIGHT
+AACGT
+>phiX174_1766_LEFT
+ACCAA
+>phiX174_1766_RIGHT
+CGTCG
+>phiX174_1769_LEFT
+AAACG
+>phiX174_1769_RIGHT
+CGTTA
+>phiX174_1771_LEFT
+ACGTC
+>phiX174_1771_RIGHT
+TTAGG
+>phiX174_1772_LEFT
+CGTCG
+>phiX174_1772_RIGHT
+TAGGC
+>phiX174_1774_LEFT
+TCGTT
+>phiX174_1774_RIGHT
+GGCCA
+>phiX174_1775_LEFT
+CGTTA
+>phiX174_1775_RIGHT
+GCCAG
+>phiX174_1776_LEFT
+GTTAG
+>phiX174_1776_RIGHT
+CCAGT
+>phiX174_1778_LEFT
+TAGGC
+>phiX174_1778_RIGHT
+AGTTT
+>phiX174_1779_LEFT
+AGGCC
+>phiX174_1779_RIGHT
+GTTTT
+>phiX174_1781_LEFT
+GCCAG
+>phiX174_1781_RIGHT
+TTTCT
+>phiX174_1782_LEFT
+CCAGT
+>phiX174_1782_RIGHT
+TTCTG
+>phiX174_1783_LEFT
+CAGTT
+>phiX174_1783_RIGHT
+TCTGG
+>phiX174_1788_LEFT
+TTCTG
+>phiX174_1788_RIGHT
+TCGTG
+>phiX174_1792_LEFT
+GGTCG
+>phiX174_1792_RIGHT
+GTTCA
+>phiX174_1802_LEFT
+AACAG
+>phiX174_1802_RIGHT
+CCTAT
+>phiX174_1804_LEFT
+CAGAC
+>phiX174_1804_RIGHT
+TATAA
+>phiX174_1805_LEFT
+AGACC
+>phiX174_1805_RIGHT
+ATAAA
+>phiX174_1806_LEFT
+GACCT
+>phiX174_1806_RIGHT
+TAAAC
+>phiX174_1824_LEFT
+GCCGC
+>phiX174_1824_RIGHT
+TTTCT
+>phiX174_1825_LEFT
+CCGCG
+>phiX174_1825_RIGHT
+TTCTT
+>phiX174_1833_LEFT
+CTTTG
+>phiX174_1833_RIGHT
+TCCTG
+>phiX174_1843_LEFT
+GAGCA
+>phiX174_1843_RIGHT
+GGCAC
+>phiX174_1847_LEFT
+ATGGC
+>phiX174_1847_RIGHT
+CTATG
+>phiX174_1854_LEFT
+TATGT
+>phiX174_1854_RIGHT
+TACTC
+>phiX174_1860_LEFT
+TACTC
+>phiX174_1860_RIGHT
+TGCGC
+>phiX174_1863_LEFT
+TCTTG
+>phiX174_1863_RIGHT
+GCTTG
+>phiX174_1866_LEFT
+TGCGC
+>phiX174_1866_RIGHT
+TGTTC
+>phiX174_1875_LEFT
+TCGTT
+>phiX174_1875_RIGHT
+TCCGC
+>phiX174_1876_LEFT
+CGTTT
+>phiX174_1876_RIGHT
+CCGCC
+>phiX174_1882_LEFT
+CCGCC
+>phiX174_1882_RIGHT
+ACTGC
+>phiX174_1889_LEFT
+CTGCG
+>phiX174_1889_RIGHT
+CTAAA
+>phiX174_1913_LEFT
+TTAAC
+>phiX174_1913_RIGHT
+CTAAA
+>phiX174_1915_LEFT
+AACGC
+>phiX174_1915_RIGHT
+AAAGG
+>phiX174_1917_LEFT
+CGCTA
+>phiX174_1917_RIGHT
+AGGTG
+>phiX174_1930_LEFT
+TTGAC
+>phiX174_1930_RIGHT
+TATAC
+>phiX174_1934_LEFT
+CTTAT
+>phiX174_1934_RIGHT
+CCGAT
+>phiX174_1940_LEFT
+CCGAT
+>phiX174_1940_RIGHT
+TTGCT
+>phiX174_1942_LEFT
+GATAT
+>phiX174_1942_RIGHT
+GCTGG
+>phiX174_1945_LEFT
+ATTGC
+>phiX174_1945_RIGHT
+GGCGA
+>phiX174_1954_LEFT
+GACCC
+>phiX174_1954_RIGHT
+GTTTT
+>phiX174_1959_LEFT
+TGTTT
+>phiX174_1959_RIGHT
+GTATG
+>phiX174_1994_LEFT
+CTATG
+>phiX174_1994_RIGHT
+AGGAT
+>phiX174_1998_LEFT
+GAAGG
+>phiX174_1998_RIGHT
+TGTTT