Mercurial > repos > devteam > vcfselectsamples
comparison vcfselectsamples.xml @ 3:2ba3b87f904f draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfselectsamples commit 36e9065027cc7bf721e9d203208477ee88906c57"
| author | iuc |
|---|---|
| date | Thu, 23 Jan 2020 08:10:31 -0500 |
| parents | 958b6484a7f1 |
| children |
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| 2:958b6484a7f1 | 3:2ba3b87f904f |
|---|---|
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
| 7 <expand macro="stdio" /> | 7 <expand macro="stdio" /> |
| 8 <command>vcfkeepsamples "${input1}" ${ ' '.join( map( lambda x:'"%s"' % ( x ), str($vcf_samples ).split(",") ) ) } > "${out_file1}"</command> | 8 <command>vcfkeepsamples '${input1}' ${ ' '.join( map( lambda x:'"%s"' % ( x ), str($vcf_samples ).split(",") ) ) } > '${out_file1}'</command> |
| 9 <inputs> | 9 <inputs> |
| 10 <param format="vcf" name="input1" type="data" label="Select VCF dataset" /> | 10 <param format="vcf" name="input1" type="data" label="Select VCF dataset" /> |
| 11 <param name="vcf_samples" type="select" label="Check to keep samples; Uncheck to remove" display="checkboxes" multiple="true"> | 11 <param name="vcf_samples" type="select" label="Check to keep samples; Uncheck to remove" display="checkboxes" multiple="true"> |
| 12 <options> | 12 <options> |
| 13 <filter type="data_meta" ref="input1" key="sample_names" /> | 13 <filter type="data_meta" ref="input1" key="sample_names" /> |