# HG changeset patch
# User devteam
# Date 1447264959 18000
# Node ID 71e19ddf52f5e6bdef216e607fd7e61675722a73
# Parent 76ff5512748ce7a574aa65b8191371dad27872be
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcftools/vcftools_merge commit a1517c9d22029095120643bbe2c8fa53754dd2b7
diff -r 76ff5512748c -r 71e19ddf52f5 tool_dependencies.xml
--- a/tool_dependencies.xml Sun Nov 24 17:10:57 2013 -0500
+++ b/tool_dependencies.xml Wed Nov 11 13:02:39 2015 -0500
@@ -1,6 +1,6 @@
-
+
diff -r 76ff5512748c -r 71e19ddf52f5 vcftools_merge.xml
--- a/vcftools_merge.xml Sun Nov 24 17:10:57 2013 -0500
+++ b/vcftools_merge.xml Wed Nov 11 13:02:39 2015 -0500
@@ -1,17 +1,17 @@
-
+
multiple VCF datasets
tabix
vcftools
-
+
## Preprocessing for each dataset.
#set dataset_names = []
- #for i, $input in enumerate( $inputs ):
- ## Sort file.
- vcf-sort ${input.file} > ${i}.vcf.sorted ;
+ #for $i, $input in enumerate( $input_files ):
+ ## Sort file.
+ vcf-sort ${input} > ${i}.vcf.sorted ;
## Compress.
bgzip ${i}.vcf.sorted ;
@@ -25,12 +25,10 @@
## Merge.
vcf-merge
#echo ' '.join( dataset_names ) # > ${output}
-
+
-
-
-
+