Mercurial > repos > devteam > vcftools_slice

comparison test-data/slice_out.vcf @ 0:1363e5d4a8b8 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author devteam
date Sun, 24 Nov 2013 17:12:15 -0500
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:1363e5d4a8b8
1 ##fileformat=VCFv4.1
2 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT panc1_ng
3 chr1 19071752 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:770:715:219:495:69.23%:9.8E-1:35:21:86:133:184:311
4 chr1 19071865 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:517:479:174:305:63.54%:9.8E-1:35:34:42:132:91:214
5 chr1 19072808 . G A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:706:657:228:429:65.3%:9.8E-1:36:19:99:129:197:232
6 chr1 19072926 . A G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:673:618:183:435:70.39%:9.8E-1:35:24:96:87:187:248
7 chr1 19074980 . C T . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:720:676:221:454:67.06%:9.8E-1:35:35:89:132:226:228
8 chr1 19075225 . A G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:718:660:190:468:70.91%:9.8E-1:34:34:93:97:231:237
9 chr1 19075327 . C A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:623:588:178:410:69.73%:9.8E-1:36:36:63:115:142:268
10 chr1 36752152 . C T . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:845:780:216:564:72.31%:9.8E-1:36:25:103:113:249:315
11 chr1 36759426 . A G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:504:465:152:309:66.45%:9.8E-1:36:36:111:41:250:59
12 chr1 36762396 . C T . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:468:377:0:377:100%:9.8E-1:0:19:0:0:127:250
13 chr1 36770605 . CTT C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:390:310:229:76:23.6%:9.8E-1:29:29:128:101:41:35
14 chr1 40361783 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:533:505:33:471:93.27%:9.8E-1:35:24:9:24:206:265
15 chr1 40363054 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:677:646:468:178:27.55%:9.8E-1:36:35:193:275:82:96
16 chr1 43812075 . G A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:692:639:16:621:97.18%:9.8E-1:33:20:10:6:343:278
17 chr1 43814864 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:182:150:8:142:94.67%:9.8E-1:27:32:8:0:141:1
18 chr1 45796269 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:571:534:0:534:100%:9.8E-1:0:24:0:0:111:423
19 chr1 45798555 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:754:685:0:685:100%:9.8E-1:0:24:0:0:366:319
20 chr1 45805566 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:327:276:0:276:100%:9.8E-1:0:20:0:0:127:149
21 chr1 47682017 . T G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:555:470:10:460:97.87%:9.8E-1:35:34:7:3:286:174
22 chr1 47683201 . C T . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:708:660:195:465:70.45%:9.8E-1:35:24:83:112:218:247
23 chr1 47684677 . T G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:691:636:27:609:95.75%:9.8E-1:36:20:17:10:319:290
24 chr1 47685455 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:407:343:0:343:99.71%:9.8E-1:0:23:0:0:46:297
25 chr1 47691568 . GCAGA G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:40:35:15:21:56.76%:9.8E-1:33:29:7:8:7:14
26 chr1 47717189 . A G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:714:667:201:464:69.57%:9.8E-1:36:21:115:86:242:222
27 chr1 47726087 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:625:603:468:135:22.39%:9.8E-1:36:35:264:204:65:70
28 chr1 47735280 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:414:381:98:283:74.28%:9.8E-1:35:36:74:24:225:58
29 chr1 47767914 . G A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:560:533:377:156:29.27%:9.8E-1:35:34:222:155:91:65
30 chr1 65325970 . C T . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:491:457:40:417:91.25%:9.8E-1:35:36:8:32:82:335
31 chr1 65330682 . G A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:482:448:141:307:68.53%:9.8E-1:35:21:21:120:41:266
32 chr1 65335095 . T C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:1022:957:364:593:61.96%:9.8E-1:35:21:147:217:251:342
33 chr1 85732065 . A G . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:319:295:6:289:97.97%:9.8E-1:37:36:5:1:206:83
34 chr1 85732133 . G A . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:434:405:124:281:69.21%:9.8E-1:36:24:82:42:200:81
35 chr1 85732941 . A C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:479:423:9:414:97.64%:9.8E-1:37:35:2:7:127:287
36 chr1 85741921 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:239:218:10:208:95.41%:9.8E-1:34:25:8:2:172:36
37 chr1 85742012 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 0/1:0:484:437:302:135:30.89%:9.8E-1:35:34:175:127:70:65
38 chr1 85742338 . G C . PASS . GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:0:260:216:6:210:97.22%:9.8E-1:30:23:1:5:52:158