Mercurial > repos > devteam > weblogo3
comparison rgWebLogo3.xml @ 3:3179d17dc6e5 draft
planemo upload commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
| author | devteam |
|---|---|
| date | Fri, 09 Oct 2015 15:53:33 -0400 |
| parents | 76426785ae1c |
| children | dc25a5169a91 |
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| 2:76426785ae1c | 3:3179d17dc6e5 |
|---|---|
| 12 #end if | 12 #end if |
| 13 </command> | 13 </command> |
| 14 <inputs> | 14 <inputs> |
| 15 <page> | 15 <page> |
| 16 <param format="fasta" name="input" type="data" label="Fasta File" /> | 16 <param format="fasta" name="input" type="data" label="Fasta File" /> |
| 17 <param name="logoname" label="Title for output Sequence Logo" type="text" size="50" value="Galaxy-Rgenetics Sequence Logo" /> | 17 <param name="logoname" label="Title for output Sequence Logo" type="text" value="Galaxy-Rgenetics Sequence Logo" /> |
| 18 <param name="outformat" type="select" label="Output format for image (or text report)" > | 18 <param name="outformat" type="select" label="Output format for image (or text report)" > |
| 19 <option value="png" selected="True">PNG screen quality</option> | 19 <option value="png" selected="True">PNG screen quality</option> |
| 20 <option value="png_print">High quality printable PNG</option> | 20 <option value="png_print">High quality printable PNG</option> |
| 21 <option value="pdf">PDF</option> | 21 <option value="pdf">PDF</option> |
| 22 <option value="jpeg">JPG</option> | 22 <option value="jpeg">JPG</option> |
| 50 <option value="part">Only use a part of the sequence</option> | 50 <option value="part">Only use a part of the sequence</option> |
| 51 </param> | 51 </param> |
| 52 <when value="complete"> | 52 <when value="complete"> |
| 53 </when> | 53 </when> |
| 54 <when value="part"> | 54 <when value="part"> |
| 55 <param name="seqstart" size="5" type="integer" value="1" help="WARNING: Specifying indexes outside the sequence lengths will cause unpredictable but bad consequences!" | 55 <param name="seqstart" type="integer" value="1" help="WARNING: Specifying indexes outside the sequence lengths will cause unpredictable but bad consequences!" |
| 56 label="Index (eg 1=first letter) of the start of the sequence range to include in the logo"> | 56 label="Index (eg 1=first letter) of the start of the sequence range to include in the logo"> |
| 57 </param> | 57 </param> |
| 58 <param name="seqend" size="5" type="integer" value="99999" label="Index (eg 75=75th letter) of the end of the sequence range to include in the logo" > | 58 <param name="seqend" type="integer" value="99999" label="Index (eg 75=75th letter) of the end of the sequence range to include in the logo" > |
| 59 </param> | 59 </param> |
| 60 </when> | 60 </when> |
| 61 </conditional> | 61 </conditional> |
| 62 <param name="size" type="select" label="Output weblogo size" > | 62 <param name="size" type="select" label="Output weblogo size" > |
| 63 <option value="large" selected="True">Large</option> | 63 <option value="large" selected="True">Large</option> |