Mercurial > repos > devteam > windowsplitter
comparison windowSplitter.xml @ 2:592089499ae7 draft
planemo upload commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
| author | devteam |
|---|---|
| date | Fri, 09 Oct 2015 15:50:53 -0400 |
| parents | 75abda2290cc |
| children | d8515fe22ac8 |
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| 1:75abda2290cc | 2:592089499ae7 |
|---|---|
| 2 <description></description> | 2 <description></description> |
| 3 <command interpreter="python">windowSplitter.py $input $size $out_file1 ${wintype.choice} ${wintype.offset} -l ${input.metadata.chromCol},${input.metadata.startCol},${input.metadata.endCol},${input.metadata.strandCol}</command> | 3 <command interpreter="python">windowSplitter.py $input $size $out_file1 ${wintype.choice} ${wintype.offset} -l ${input.metadata.chromCol},${input.metadata.startCol},${input.metadata.endCol},${input.metadata.strandCol}</command> |
| 4 <inputs> | 4 <inputs> |
| 5 <!--<param label="Genome" name="dbkey" type="genomebuild"/>--> | 5 <!--<param label="Genome" name="dbkey" type="genomebuild"/>--> |
| 6 <param format="interval" name="input" type="data" label="Select data"/> | 6 <param format="interval" name="input" type="data" label="Select data"/> |
| 7 <param name="size" size="10" type="integer" value="500" label="Window size"/> | 7 <param name="size" type="integer" value="500" label="Window size"/> |
| 8 <conditional name="wintype"> | 8 <conditional name="wintype"> |
| 9 <param name="choice" type="select" label="Make sliding windows?"> | 9 <param name="choice" type="select" label="Make sliding windows?"> |
| 10 <option value="0" selected="true">No</option> | 10 <option value="0" selected="true">No</option> |
| 11 <option value="1">Yes</option> | 11 <option value="1">Yes</option> |
| 12 </param> | 12 </param> |
| 13 <when value="0"> | 13 <when value="0"> |
| 14 <param name="offset" type="hidden" value="0" /> | 14 <param name="offset" type="hidden" value="0" /> |
| 15 </when> | 15 </when> |
| 16 <when value="1"> | 16 <when value="1"> |
| 17 <param name="offset" size="10" type="integer" value="10" label="Offset size"/> | 17 <param name="offset" type="integer" value="10" label="Offset size"/> |
| 18 </when> | 18 </when> |
| 19 </conditional> | 19 </conditional> |
| 20 </inputs> | 20 </inputs> |
| 21 <outputs> | 21 <outputs> |
| 22 <data format="interval" name="out_file1" metadata_source="input"/> | 22 <data format="interval" name="out_file1" metadata_source="input"/> |