Mercurial > repos > devteam > xy_plot
comparison r_wrapper.sh @ 3:319fa5a9fc1b draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/xy_plot commit facdb350072c8492654c90040fea3109dc9b51cd
author | devteam |
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date | Wed, 07 Dec 2016 18:29:23 -0500 |
parents | acf952549b53 |
children |
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2:23657fcaaa5c | 3:319fa5a9fc1b |
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1 #!/bin/sh | 1 #!/bin/sh |
2 | 2 |
3 ### Run R providing the R script in $1 as standard input and passing | 3 ### Run R providing the R script in $1 as standard input and passing |
4 ### the remaining arguments on the command line | 4 ### the remaining arguments on the command line |
5 | 5 |
6 # Function that writes a message to stderr and exits | 6 # Function that writes a message to stderr and exits |
7 function fail | 7 function fail |
8 { | 8 { |
9 echo "$@" >&2 | 9 echo "$@" >&2 |
10 exit 1 | 10 exit 1 |
11 } | 11 } |
12 | 12 |
13 # Ensure R executable is found | 13 # Ensure R executable is found |
14 which R > /dev/null || fail "'R' is required by this tool but was not found on path" | 14 which R > /dev/null || fail "'R' is required by this tool but was not found on path" |
15 | 15 |
16 # Extract first argument | 16 # Extract first argument |
17 infile=$1; shift | 17 infile=$1; shift |
18 | 18 |
19 # Ensure the file exists | 19 # Ensure the file exists |