# HG changeset patch # User devteam # Date 1513532264 18000 # Node ID ecb437f1d298b56458d96b3d8cc9a591759d8205 # Parent 319fa5a9fc1bf1786b69de72210eb3a3cd12dd13 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/xy_plot commit d792f43f02cd0d6ab74411c21e0897937cb075aa diff -r 319fa5a9fc1b -r ecb437f1d298 r_wrapper.sh --- a/r_wrapper.sh Wed Dec 07 18:29:23 2016 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,23 +0,0 @@ -#!/bin/sh - -### Run R providing the R script in $1 as standard input and passing -### the remaining arguments on the command line - -# Function that writes a message to stderr and exits -function fail -{ - echo "$@" >&2 - exit 1 -} - -# Ensure R executable is found -which R > /dev/null || fail "'R' is required by this tool but was not found on path" - -# Extract first argument -infile=$1; shift - -# Ensure the file exists -test -f $infile || fail "R input file '$infile' does not exist" - -# Invoke R passing file named by first argument to stdin -R --vanilla --slave $* < $infile diff -r 319fa5a9fc1b -r ecb437f1d298 tool_dependencies.xml --- a/tool_dependencies.xml Wed Dec 07 18:29:23 2016 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ - - - - - - diff -r 319fa5a9fc1b -r ecb437f1d298 xy_plot.xml --- a/xy_plot.xml Wed Dec 07 18:29:23 2016 -0500 +++ b/xy_plot.xml Sun Dec 17 12:37:44 2017 -0500 @@ -1,10 +1,9 @@ for multiple series and graph types - R - fontconfig + r-base - r_wrapper.sh $script_file + Rscript $script_file ## Setup R error handling to go to stderr