Mercurial > repos > dfornika > data_manager_build_kraken2_database
comparison data_manager_conf.xml @ 9:1601703ae511 draft
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 70494d589aa1990618ebc7a895e91477d41c3203-dirty
author | dfornika |
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date | Mon, 04 Mar 2019 20:09:07 -0500 |
parents | ae6180bdb1e9 |
children | d0b9df6c21dd |
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8:f53064ca5398 | 9:1601703ae511 |
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3 <data_table name="kraken2_databases"> | 3 <data_table name="kraken2_databases"> |
4 <output> | 4 <output> |
5 <column name="value"/> | 5 <column name="value"/> |
6 <column name="name"/> | 6 <column name="name"/> |
7 <column name="path" output_ref="out_file"> | 7 <column name="path" output_ref="out_file"> |
8 <move type="directory" relativize_symlinks="True"> | 8 <move type="directory"> |
9 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases</target> | 9 <source>${path}</source> |
10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target> | |
10 </move> | 11 </move> |
11 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases</value_translation> | 12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation> |
12 <value_translation type="function">abspath</value_translation> | |
13 </column> | 13 </column> |
14 </output> | 14 </output> |
15 </data_table> | 15 </data_table> |
16 </data_manager> | 16 </data_manager> |
17 <data_manager tool_file="data_manager/kraken2_build_custom.xml" id="kraken2_build_custom" version="1.0"> | 17 <data_manager tool_file="data_manager/kraken2_build_custom.xml" id="kraken2_build_custom" version="1.0"> |
18 <data_table name="kraken2_databases"> | 18 <data_table name="kraken2_databases"> |
19 <output> | 19 <output> |
20 <column name="value"/> | 20 <column name="value"/> |
21 <column name="name"/> | 21 <column name="name"/> |
22 <column name="path" output_ref="out_file"> | 22 <column name="path" output_ref="out_file"> |
23 <move type="directory" relativize_symlinks="True"> | 23 <move type="directory"> |
24 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases</target> | 24 <source>${path}</source> |
25 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target> | |
25 </move> | 26 </move> |
26 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases</value_translation> | 27 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation> |
27 <value_translation type="function">abspath</value_translation> | |
28 </column> | 28 </column> |
29 </output> | 29 </output> |
30 </data_table> | 30 </data_table> |
31 </data_manager> | 31 </data_manager> |
32 <data_manager tool_file="data_manager/kraken2_build_special.xml" id="kraken2_build_special" version="1.0"> | 32 <data_manager tool_file="data_manager/kraken2_build_special.xml" id="kraken2_build_special" version="1.0"> |
33 <data_table name="kraken2_databases"> | 33 <data_table name="kraken2_databases"> |
34 <output> | 34 <output> |
35 <column name="value"/> | 35 <column name="value"/> |
36 <column name="name"/> | 36 <column name="name"/> |
37 <column name="path" output_ref="out_file"> | 37 <column name="path" output_ref="out_file"> |
38 <move type="directory" relativize_symlinks="True"> | 38 <move type="directory"> |
39 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases</target> | 39 <source>${path}</source> |
40 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target> | |
40 </move> | 41 </move> |
41 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases</value_translation> | 42 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation> |
42 <value_translation type="function">abspath</value_translation> | |
43 </column> | 43 </column> |
44 </output> | 44 </output> |
45 </data_table> | 45 </data_table> |
46 </data_manager> | 46 </data_manager> |
47 </data_managers> | 47 </data_managers> |