Mercurial > repos > dfornika > data_manager_build_kraken2_database

comparison data_manager_conf.xml @ 9:1601703ae511 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 70494d589aa1990618ebc7a895e91477d41c3203-dirty
author dfornika
date Mon, 04 Mar 2019 20:09:07 -0500
parents ae6180bdb1e9
children d0b9df6c21dd
comparison
equal deleted inserted replaced
8:f53064ca5398 9:1601703ae511
3 <data_table name="kraken2_databases"> 3 <data_table name="kraken2_databases">
4 <output> 4 <output>
5 <column name="value"/> 5 <column name="value"/>
6 <column name="name"/> 6 <column name="name"/>
7 <column name="path" output_ref="out_file"> 7 <column name="path" output_ref="out_file">
8 <move type="directory" relativize_symlinks="True"> 8 <move type="directory">
9 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases</target> 9 <source>${path}</source>
10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
10 </move> 11 </move>
11 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases</value_translation> 12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
12 <value_translation type="function">abspath</value_translation>
13 </column> 13 </column>
14 </output> 14 </output>
15 </data_table> 15 </data_table>
16 </data_manager> 16 </data_manager>
17 <data_manager tool_file="data_manager/kraken2_build_custom.xml" id="kraken2_build_custom" version="1.0"> 17 <data_manager tool_file="data_manager/kraken2_build_custom.xml" id="kraken2_build_custom" version="1.0">
18 <data_table name="kraken2_databases"> 18 <data_table name="kraken2_databases">
19 <output> 19 <output>
20 <column name="value"/> 20 <column name="value"/>
21 <column name="name"/> 21 <column name="name"/>
22 <column name="path" output_ref="out_file"> 22 <column name="path" output_ref="out_file">
23 <move type="directory" relativize_symlinks="True"> 23 <move type="directory">
24 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases</target> 24 <source>${path}</source>
25 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
25 </move> 26 </move>
26 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases</value_translation> 27 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
27 <value_translation type="function">abspath</value_translation>
28 </column> 28 </column>
29 </output> 29 </output>
30 </data_table> 30 </data_table>
31 </data_manager> 31 </data_manager>
32 <data_manager tool_file="data_manager/kraken2_build_special.xml" id="kraken2_build_special" version="1.0"> 32 <data_manager tool_file="data_manager/kraken2_build_special.xml" id="kraken2_build_special" version="1.0">
33 <data_table name="kraken2_databases"> 33 <data_table name="kraken2_databases">
34 <output> 34 <output>
35 <column name="value"/> 35 <column name="value"/>
36 <column name="name"/> 36 <column name="name"/>
37 <column name="path" output_ref="out_file"> 37 <column name="path" output_ref="out_file">
38 <move type="directory" relativize_symlinks="True"> 38 <move type="directory">
39 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases</target> 39 <source>${path}</source>
40 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
40 </move> 41 </move>
41 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases</value_translation> 42 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
42 <value_translation type="function">abspath</value_translation>
43 </column> 43 </column>
44 </output> 44 </output>
45 </data_table> 45 </data_table>
46 </data_manager> 46 </data_manager>
47 </data_managers> 47 </data_managers>