Mercurial > repos > dfornika > data_manager_build_kraken2_database
comparison data_manager_conf.xml @ 5:1f6fe9dc5490 draft
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 47bcc8467200adee842a5574b67bc6ef46c0be71-dirty
| author | dfornika |
|---|---|
| date | Mon, 04 Mar 2019 18:59:44 -0500 |
| parents | b03007bc0f05 |
| children | ae6180bdb1e9 |
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| 4:988c436ad798 | 5:1f6fe9dc5490 |
|---|---|
| 1 <data_managers> | 1 <data_managers> |
| 2 <data_manager tool_file="data_manager/kraken2_custom_database_builder.xml" id="kraken2_custom_database_builder" version="1.0"> | |
| 3 <data_table name="kraken2_databases"> | |
| 4 <output> | |
| 5 <column name="value"/> | |
| 6 <column name="name"/> | |
| 7 <column name="path" output_ref="out_file"> | |
| 8 <move type="directory" relativize_symlinks="True"> | |
| 9 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target> | |
| 10 </move> | |
| 11 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation> | |
| 12 <value_translation type="function">abspath</value_translation> | |
| 13 </column> | |
| 14 </output> | |
| 15 </data_table> | |
| 16 </data_manager> | |
| 17 <data_manager tool_file="data_manager/kraken2_standard_database_builder.xml" id="kraken2_standard_database_builder" version="1.0"> | |
| 18 <data_table name="kraken2_databases"> | |
| 19 <output> | |
| 20 <column name="value"/> | |
| 21 <column name="name"/> | |
| 22 <column name="path" output_ref="out_file"> | |
| 23 <move type="directory" relativize_symlinks="True"> | |
| 24 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target> | |
| 25 </move> | |
| 26 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation> | |
| 27 <value_translation type="function">abspath</value_translation> | |
| 28 </column> | |
| 29 </output> | |
| 30 </data_table> | |
| 31 </data_manager> | |
| 32 <data_manager tool_file="data_manager/kraken2_build_standard.xml" id="kraken2_build_standard" version="1.0"> | 2 <data_manager tool_file="data_manager/kraken2_build_standard.xml" id="kraken2_build_standard" version="1.0"> |
| 33 <data_table name="kraken2_databases"> | 3 <data_table name="kraken2_databases"> |
| 34 <output> | 4 <output> |
| 35 <column name="value"/> | 5 <column name="value"/> |
| 36 <column name="name"/> | 6 <column name="name"/> |
| 37 <column name="path" output_ref="out_file"> | 7 <column name="path" output_ref="out_file"> |
| 38 <move type="directory" relativize_symlinks="True"> | 8 <move type="directory" relativize_symlinks="True"> |
| 39 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target> | 9 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases</target> |
| 40 </move> | 10 </move> |
| 41 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation> | 11 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases</value_translation> |
| 42 <value_translation type="function">abspath</value_translation> | 12 <value_translation type="function">abspath</value_translation> |
| 43 </column> | 13 </column> |
| 44 </output> | 14 </output> |
| 45 </data_table> | 15 </data_table> |
| 46 </data_manager> | 16 </data_manager> |
| 49 <output> | 19 <output> |
| 50 <column name="value"/> | 20 <column name="value"/> |
| 51 <column name="name"/> | 21 <column name="name"/> |
| 52 <column name="path" output_ref="out_file"> | 22 <column name="path" output_ref="out_file"> |
| 53 <move type="directory" relativize_symlinks="True"> | 23 <move type="directory" relativize_symlinks="True"> |
| 54 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target> | 24 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases</target> |
| 55 </move> | 25 </move> |
| 56 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation> | 26 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases</value_translation> |
| 57 <value_translation type="function">abspath</value_translation> | 27 <value_translation type="function">abspath</value_translation> |
| 58 </column> | 28 </column> |
| 59 </output> | 29 </output> |
| 60 </data_table> | 30 </data_table> |
| 61 </data_manager> | 31 </data_manager> |