Mercurial > repos > dfornika > data_manager_build_kraken2_database
comparison data_manager_conf.xml @ 0:7e43f66abe9d draft
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
| author | dfornika |
|---|---|
| date | Thu, 28 Feb 2019 02:32:38 -0500 |
| parents | |
| children | b03007bc0f05 |
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| -1:000000000000 | 0:7e43f66abe9d |
|---|---|
| 1 <data_managers> | |
| 2 <data_manager tool_file="data_manager/kraken2_custom_database_builder.xml" id="kraken2_custom_database_builder" version="1.0"> | |
| 3 <data_table name="kraken2_databases"> | |
| 4 <output> | |
| 5 <column name="value"/> | |
| 6 <column name="name"/> | |
| 7 <column name="path" output_ref="out_file"> | |
| 8 <move type="directory" relativize_symlinks="True"> | |
| 9 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target> | |
| 10 </move> | |
| 11 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation> | |
| 12 <value_translation type="function">abspath</value_translation> | |
| 13 </column> | |
| 14 </output> | |
| 15 </data_table> | |
| 16 </data_manager> | |
| 17 <data_manager tool_file="data_manager/kraken2_standard_database_builder.xml" id="kraken2_standard_database_builder" version="1.0"> | |
| 18 <data_table name="kraken2_databases"> | |
| 19 <output> | |
| 20 <column name="value"/> | |
| 21 <column name="name"/> | |
| 22 <column name="path" output_ref="out_file"> | |
| 23 <move type="directory" relativize_symlinks="True"> | |
| 24 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target> | |
| 25 </move> | |
| 26 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation> | |
| 27 <value_translation type="function">abspath</value_translation> | |
| 28 </column> | |
| 29 </output> | |
| 30 </data_table> | |
| 31 </data_manager> | |
| 32 <data_manager tool_file="data_manager/kraken2_build_standard.xml" id="kraken2_build_standard" version="1.0"> | |
| 33 <data_table name="kraken2_databases"> | |
| 34 <output> | |
| 35 <column name="value"/> | |
| 36 <column name="name"/> | |
| 37 <column name="path" output_ref="out_file"> | |
| 38 <move type="directory" relativize_symlinks="True"> | |
| 39 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target> | |
| 40 </move> | |
| 41 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation> | |
| 42 <value_translation type="function">abspath</value_translation> | |
| 43 </column> | |
| 44 </output> | |
| 45 </data_table> | |
| 46 </data_manager> | |
| 47 </data_managers> |