Mercurial > repos > dfornika > data_manager_build_kraken2_database
comparison data_manager/kraken2_build_special.py @ 8:f53064ca5398 draft
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 70494d589aa1990618ebc7a895e91477d41c3203-dirty
author | dfornika |
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date | Mon, 04 Mar 2019 19:24:23 -0500 |
parents | ae6180bdb1e9 |
children | 1601703ae511 |
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7:ae6180bdb1e9 | 8:f53064ca5398 |
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31 "minimizer-spaces=" + str(kraken2_args["minimizer_spaces"]), | 31 "minimizer-spaces=" + str(kraken2_args["minimizer_spaces"]), |
32 ]) | 32 ]) |
33 | 33 |
34 args = [ | 34 args = [ |
35 '--threads', str(kraken2_args["threads"]), | 35 '--threads', str(kraken2_args["threads"]), |
36 '--special', kraken2_args["special"] | 36 '--special', kraken2_args["special"], |
37 '--kmer-len', str(kraken2_args["kmer_len"]), | 37 '--kmer-len', str(kraken2_args["kmer_len"]), |
38 '--minimizer-len', str(kraken2_args["minimizer_len"]), | 38 '--minimizer-len', str(kraken2_args["minimizer_len"]), |
39 '--minimizer-spaces', str(kraken2_args["minimizer_spaces"]), | 39 '--minimizer-spaces', str(kraken2_args["minimizer_spaces"]), |
40 '--db', database_name | 40 '--db', database_name |
41 ] | 41 ] |