Mercurial > repos > dfornika > data_manager_build_kraken2_database

comparison data_manager/kraken2_build_special.py @ 8:f53064ca5398 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 70494d589aa1990618ebc7a895e91477d41c3203-dirty
author dfornika
date Mon, 04 Mar 2019 19:24:23 -0500
parents ae6180bdb1e9
children 1601703ae511
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7:ae6180bdb1e9 8:f53064ca5398
31 "minimizer-spaces=" + str(kraken2_args["minimizer_spaces"]), 31 "minimizer-spaces=" + str(kraken2_args["minimizer_spaces"]),
32 ]) 32 ])
33 33
34 args = [ 34 args = [
35 '--threads', str(kraken2_args["threads"]), 35 '--threads', str(kraken2_args["threads"]),
36 '--special', kraken2_args["special"] 36 '--special', kraken2_args["special"],
37 '--kmer-len', str(kraken2_args["kmer_len"]), 37 '--kmer-len', str(kraken2_args["kmer_len"]),
38 '--minimizer-len', str(kraken2_args["minimizer_len"]), 38 '--minimizer-len', str(kraken2_args["minimizer_len"]),
39 '--minimizer-spaces', str(kraken2_args["minimizer_spaces"]), 39 '--minimizer-spaces', str(kraken2_args["minimizer_spaces"]),
40 '--db', database_name 40 '--db', database_name
41 ] 41 ]