Mercurial > repos > dfornika > data_manager_build_kraken2_database

diff data_manager/kraken2_build_custom.xml @ 4:988c436ad798 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
author dfornika
date Fri, 01 Mar 2019 14:01:57 -0500
parents cf0cda80b659
children 1f6fe9dc5490
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line diff
--- a/data_manager/kraken2_build_custom.xml	Thu Feb 28 18:55:04 2019 -0500
+++ b/data_manager/kraken2_build_custom.xml	Fri Mar 01 14:01:57 2019 -0500
@@ -7,13 +7,13 @@
     <version_command>kraken2 -version | head -n 1 | awk '{print $NF}'</version_command>
     <command detect_errors="exit_code">
     <![CDATA[
-        python '$__tool_directory__/kraken2_build_standard.py'
+        python '$__tool_directory__/kraken2_build_custom.py'
           '${out_file}'
           --threads \${GALAXY_SLOTS:-1}
-          --fasta ${input_fasta}
           --kmer-len ${kmer_len}
           --minimizer-len ${minimizer_len}
           --minimizer-spaces ${minimizer_spaces}
+          --fasta ${input_fasta}
     ]]>
     </command>
     <inputs>