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view data_manager_conf.xml @ 16:d9f190088154 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 70494d589aa1990618ebc7a895e91477d41c3203-dirty
author dfornika
date Tue, 05 Mar 2019 16:45:43 -0500
parents 039a65ff445d
children 4c9f9d6098eb
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<data_managers>
    <data_manager tool_file="data_manager/kraken2_build_standard.xml" id="kraken2_build_standard" version="1.0">
	<data_table name="kraken2_databases">
	    <output>
		<column name="value"/>
		<column name="name"/>
		<column name="path" output_ref="out_file">
		    <move type="directory">
		        <source>${path}</source>
			<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
		    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
		    <value_translation type="function">abspath</value_translation>
		</column>
	    </output>
	</data_table>
    </data_manager>
    <data_manager tool_file="data_manager/kraken2_build_custom.xml" id="kraken2_build_custom" version="1.0">
	<data_table name="kraken2_databases">
	    <output>
		<column name="value"/>
		<column name="name"/>
		<column name="path" output_ref="out_file">
		    <move type="directory">
		        <source>${path}</source>
			<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
		    </move>
		    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
		    <value_translation type="function">abspath</value_translation>
		</column>
	    </output>
	</data_table>
    </data_manager>
    <data_manager tool_file="data_manager/kraken2_build_special.xml" id="kraken2_build_special" version="1.0">
	<data_table name="kraken2_databases">
	    <output>
		<column name="value"/>
		<column name="name"/>
		<column name="path" output_ref="out_file">
		    <move type="directory">
		        <source>${path}</source>
			<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
		    </move>
		    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
		    <value_translation type="function">abspath</value_translation>
		</column>
	    </output>
	</data_table>
    </data_manager>
    <data_manager tool_file="data_manager/kraken2_build_minikraken.xml" id="kraken2_build_minikraken" version="1.0">
	<data_table name="kraken2_databases">
	    <output>
		<column name="value"/>
		<column name="name"/>
		<column name="path" output_ref="out_file">
		    <move type="directory">
		        <source>${path}</source>
			<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
		    </move>
		    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
		    <value_translation type="function">abspath</value_translation>
		</column>
	    </output>
	</data_table>
    </data_manager>
</data_managers>