comparison macros.xml @ 1:7932d09da19b draft

planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/kraken2 commit 593a4002db3f2513974809a94db514c05fa589f6-dirty

0:a77e88d426d9

            <options from_data_table="kraken2_databases">
                <validator message="No Kraken2 database is available" type="no_options" />
            </options>
        </param>
    </xml>
    <token name="@SET_DATABASE_PATH@">if [ -d '${kraken2_database.fields.path}/${kraken2_database.fields.name}' ]; then export KRAKEN2_DEFAULT_DB='${kraken2_database.fields.path}/${kraken2_database.fields.name}'; else export KRAKEN2_DEFAULT_DB='${kraken_database.fields.path}'; fi</token>
    <token name="@INPUT_DATABASE@">--db "\$KRAKEN2_DEFAULT_DB"</token>
</macros>

1:7932d09da19b

            <options from_data_table="kraken2_databases">
                <validator message="No Kraken2 database is available" type="no_options" />
            </options>
        </param>
    </xml>
</macros>