Mercurial > repos > dfornika > kraken2
changeset 10:a74785cdf5e3 draft
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/kraken2 commit 593a4002db3f2513974809a94db514c05fa589f6-dirty
| author | dfornika |
|---|---|
| date | Mon, 04 Mar 2019 17:25:29 -0500 |
| parents | a811afe91eab |
| children | da1a2d98dab1 |
| files | kraken2.xml macros.xml |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/kraken2.xml Mon Mar 04 17:21:42 2019 -0500 +++ b/kraken2.xml Mon Mar 04 17:25:29 2019 -0500 @@ -57,7 +57,7 @@ <param name="split_reads" value="false"/> <param name="quick" value="no"/> <param name="only-classified-output" value="false"/> - <param name="kraken_database" value="new_style_test_entry"/> + <param name="kraken2_database" value="new_style_test_entry"/> <output name="output" file="kraken_test1_output.tab" ftype="tabular"/> </test> </tests>
--- a/macros.xml Mon Mar 04 17:21:42 2019 -0500 +++ b/macros.xml Mon Mar 04 17:25:29 2019 -0500 @@ -15,5 +15,5 @@ <citation type="doi">10.1186/gb-2014-15-3-r46</citation> </citations> </xml> - <token name="@SET_DATABASE_PATH@">if [ -d '${kraken2_database.fields.path}/${kraken2_database.fields.name}' ]; then export KRAKEN2_DB_PATH='${kraken_database.fields.path}/${kraken_database.fields.name}'; else export KRAKEN2_DB_PATH='${kraken_database.fields.path}'; fi</token> + <token name="@SET_DATABASE_PATH@">if [ -d '${kraken2_database.fields.path}/${kraken2_database.fields.name}' ]; then export KRAKEN2_DB_PATH='${kraken2_database.fields.path}/${kraken2_database.fields.name}'; else export KRAKEN2_DB_PATH='${kraken2_database.fields.path}'; fi</token> </macros>