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comparison tools/mentalist_call/mentalist_call.xml @ 2:d465e81782a3 draft

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planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 24d205ed264215a426eb4a52dc95740dd42b3754
author dfornika
date Sat, 24 Mar 2018 23:19:00 -0400
parents c6a98b93e569
children 4ea71c8e2db0
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1:c6a98b93e569 2:d465e81782a3
13 --mutation_threshold '$mutation_threshold' 13 --mutation_threshold '$mutation_threshold'
14 --kt '$kmer_threshold' 14 --kt '$kmer_threshold'
15 $output_votes 15 $output_votes
16 $output_special 16 $output_special
17 #if $input_type.sPaired == "paired": 17 #if $input_type.sPaired == "paired":
18 -s $input_type.pInput1.name -1 $input_type.pInput1 -2 $input_type.pInput2 18 -1 $input_type.pInput1 -2 $input_type.pInput2
19 #elif $input_type.sPaired == "collections": 19 #elif $input_type.sPaired == "collections":
20 -s $input_type.fastq_collection.name -1 $input_type.fastq_collection.forward -2 $input_type.fastq_collection.reverse 20 -1 $input_type.fastq_collection.forward -2 $input_type.fastq_collection.reverse
21 #end if 21 #end if
22 ]]></command> 22 ]]></command>
23 <inputs> 23 <inputs>
24 <conditional name="input_type"> 24 <conditional name="input_type">
25 <param name="sPaired" type="select" label="Single Pair or Collection"> 25 <param name="sPaired" type="select" label="Single Pair or Collection">