Mercurial > repos > dfornika > mentalist

diff data_managers/data_manager_conf.xml @ 1:c6a98b93e569 draft

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planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
author dfornika
date Sat, 24 Mar 2018 23:12:21 -0400
parents 1d9e3950ce61
children 4ea71c8e2db0
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line diff
--- a/data_managers/data_manager_conf.xml	Wed Dec 20 17:36:03 2017 -0500
+++ b/data_managers/data_manager_conf.xml	Sat Mar 24 23:12:21 2018 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <data_managers>
-  <data_manager tool_file="data_manager_mentalist_build_db/data_manager/mentalist_build_db.xml" id="mentalist_build_db" version="0.1.3">
+  <data_manager tool_file="data_manager_mentalist_build_db/data_manager/mentalist_build_db.xml" id="mentalist_build_db" version="0.2.2">
     <data_table name="mentalist_databases">
       <output>
         <column name="value" />
@@ -15,7 +15,7 @@
       </output>
     </data_table>
   </data_manager>
-  <data_manager tool_file="data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.xml" id="mentalist_download_cgmlst" version="0.1.3">
+  <data_manager tool_file="data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.xml" id="mentalist_download_cgmlst" version="0.2.2">
     <data_table name="mentalist_databases">
       <output>
         <column name="value" />
@@ -30,7 +30,22 @@
       </output>
     </data_table>
   </data_manager>
-  <data_manager tool_file="data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.xml" id="mentalist_download_pubmlst" version="0.1.3">
+  <data_manager tool_file="data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.xml" id="mentalist_download_pubmlst" version="0.2.2">
+    <data_table name="mentalist_databases">
+      <output>
+        <column name="value" />
+        <column name="name" />
+        <column name="path" output_ref="out_file">
+          <move type="directory" relativize_symlinks="True">
+            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
+          </move>
+          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
+          <value_translation type="function">abspath</value_translation>
+        </column>
+      </output>
+    </data_table>
+  </data_manager>
+  <data_manager tool_file="data_manager_mentalist_download_enterobase/data_manager/mentalist_download_enterobase.xml" id="mentalist_download_enterobase" version="0.2.2">
     <data_table name="mentalist_databases">
       <output>
         <column name="value" />